Multiple sequence alignment - TraesCS2A01G250600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G250600 chr2A 100.000 3782 0 0 1 3782 378399327 378395546 0.000000e+00 6985.0
1 TraesCS2A01G250600 chr2A 86.667 270 34 2 208 476 171072320 171072588 7.940000e-77 298.0
2 TraesCS2A01G250600 chr2A 94.764 191 8 2 4 193 186413928 186413739 2.860000e-76 296.0
3 TraesCS2A01G250600 chr2A 91.667 48 4 0 2828 2875 2319853 2319900 2.440000e-07 67.6
4 TraesCS2A01G250600 chr2A 100.000 29 0 0 2850 2878 16133529 16133501 2.000000e-03 54.7
5 TraesCS2A01G250600 chr2D 95.392 2344 52 20 466 2785 301380405 301378094 0.000000e+00 3679.0
6 TraesCS2A01G250600 chr2D 90.402 646 59 3 3138 3782 301360543 301359900 0.000000e+00 846.0
7 TraesCS2A01G250600 chr2D 83.516 91 12 1 2938 3025 301378014 301377924 8.710000e-12 82.4
8 TraesCS2A01G250600 chr2B 96.355 1756 48 3 775 2516 363344203 363342450 0.000000e+00 2874.0
9 TraesCS2A01G250600 chr2B 83.841 656 87 7 3139 3782 363341019 363340371 1.160000e-169 606.0
10 TraesCS2A01G250600 chr2B 92.355 327 11 4 466 782 363344546 363344224 1.600000e-123 453.0
11 TraesCS2A01G250600 chr2B 95.105 286 12 1 2511 2794 363341620 363341335 2.070000e-122 449.0
12 TraesCS2A01G250600 chr2B 87.500 256 24 7 208 460 689482464 689482714 4.780000e-74 289.0
13 TraesCS2A01G250600 chr2B 94.118 68 1 2 2874 2941 363341338 363341274 2.400000e-17 100.0
14 TraesCS2A01G250600 chr5D 76.587 1512 280 52 1253 2738 38724177 38725640 0.000000e+00 763.0
15 TraesCS2A01G250600 chr5D 85.644 202 17 8 6 205 238665611 238665420 6.410000e-48 202.0
16 TraesCS2A01G250600 chr5B 77.062 1382 261 43 1265 2623 29337809 29339157 0.000000e+00 745.0
17 TraesCS2A01G250600 chr5B 86.229 472 58 5 3138 3605 658466696 658467164 4.360000e-139 505.0
18 TraesCS2A01G250600 chr5B 86.296 467 57 5 3138 3600 356688271 356687808 5.640000e-138 501.0
19 TraesCS2A01G250600 chr5B 89.513 267 24 4 200 464 239309906 239310170 6.050000e-88 335.0
20 TraesCS2A01G250600 chr5B 85.714 56 7 1 2821 2875 524413474 524413529 1.470000e-04 58.4
21 TraesCS2A01G250600 chr5A 77.079 1383 258 45 1265 2623 27516387 27517734 0.000000e+00 743.0
22 TraesCS2A01G250600 chr5A 91.748 206 9 5 1 205 119071517 119071319 2.880000e-71 279.0
23 TraesCS2A01G250600 chr5A 90.385 52 5 0 2828 2879 45378602 45378551 6.780000e-08 69.4
24 TraesCS2A01G250600 chr3B 86.354 469 52 8 3138 3600 702702350 702701888 5.640000e-138 501.0
25 TraesCS2A01G250600 chr7B 86.017 472 59 5 3138 3605 739379472 739379940 2.030000e-137 499.0
26 TraesCS2A01G250600 chr7B 85.805 472 60 5 3138 3605 191893385 191892917 9.440000e-136 494.0
27 TraesCS2A01G250600 chr6B 86.170 470 56 8 3138 3602 41027656 41028121 2.030000e-137 499.0
28 TraesCS2A01G250600 chr6B 91.765 255 19 2 208 461 376296854 376296601 1.670000e-93 353.0
29 TraesCS2A01G250600 chr6B 89.963 269 20 7 208 470 158996088 158995821 1.300000e-89 340.0
30 TraesCS2A01G250600 chr6B 100.000 29 0 0 2850 2878 213838049 213838021 2.000000e-03 54.7
31 TraesCS2A01G250600 chr1B 85.835 473 58 7 3138 3605 94009309 94009777 9.440000e-136 494.0
32 TraesCS2A01G250600 chr1B 85.805 472 60 5 3138 3605 671525903 671526371 9.440000e-136 494.0
33 TraesCS2A01G250600 chr1A 91.120 259 20 3 200 455 197137101 197136843 7.780000e-92 348.0
34 TraesCS2A01G250600 chr1A 90.458 262 23 2 208 468 119702369 119702629 1.010000e-90 344.0
35 TraesCS2A01G250600 chr1A 90.076 262 24 2 200 460 418221196 418220936 4.680000e-89 339.0
36 TraesCS2A01G250600 chr1A 90.347 259 22 3 211 467 360012258 360012001 1.680000e-88 337.0
37 TraesCS2A01G250600 chr4B 90.458 262 24 1 208 469 393154192 393153932 1.010000e-90 344.0
38 TraesCS2A01G250600 chr7D 89.888 267 23 4 200 464 177572153 177572417 1.300000e-89 340.0
39 TraesCS2A01G250600 chr7D 86.634 202 12 7 1 193 366740697 366740502 3.830000e-50 209.0
40 TraesCS2A01G250600 chr7D 86.598 194 17 4 1 193 116823669 116823854 4.950000e-49 206.0
41 TraesCS2A01G250600 chr6A 94.819 193 8 2 1 192 447881319 447881128 2.210000e-77 300.0
42 TraesCS2A01G250600 chr6A 85.567 194 19 4 1 193 20164880 20164695 1.070000e-45 195.0
43 TraesCS2A01G250600 chr6A 95.349 86 4 0 2790 2875 471176557 471176472 1.830000e-28 137.0
44 TraesCS2A01G250600 chr7A 86.891 267 33 2 209 474 337341813 337342078 7.940000e-77 298.0
45 TraesCS2A01G250600 chr7A 91.765 85 7 0 2791 2875 459699482 459699566 6.640000e-23 119.0
46 TraesCS2A01G250600 chr7A 96.875 32 0 1 2851 2882 556321622 556321652 7.000000e-03 52.8
47 TraesCS2A01G250600 chr3D 85.641 195 18 5 1 193 275618726 275618540 2.980000e-46 196.0
48 TraesCS2A01G250600 chr1D 84.694 196 19 6 1 193 386417220 386417407 6.450000e-43 185.0
49 TraesCS2A01G250600 chr4A 100.000 33 0 0 2850 2882 626166321 626166353 1.130000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G250600 chr2A 378395546 378399327 3781 True 6985.0 6985 100.0000 1 3782 1 chr2A.!!$R3 3781
1 TraesCS2A01G250600 chr2D 301377924 301380405 2481 True 1880.7 3679 89.4540 466 3025 2 chr2D.!!$R2 2559
2 TraesCS2A01G250600 chr2D 301359900 301360543 643 True 846.0 846 90.4020 3138 3782 1 chr2D.!!$R1 644
3 TraesCS2A01G250600 chr2B 363340371 363344546 4175 True 896.4 2874 92.3548 466 3782 5 chr2B.!!$R1 3316
4 TraesCS2A01G250600 chr5D 38724177 38725640 1463 False 763.0 763 76.5870 1253 2738 1 chr5D.!!$F1 1485
5 TraesCS2A01G250600 chr5B 29337809 29339157 1348 False 745.0 745 77.0620 1265 2623 1 chr5B.!!$F1 1358
6 TraesCS2A01G250600 chr5A 27516387 27517734 1347 False 743.0 743 77.0790 1265 2623 1 chr5A.!!$F1 1358

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 176 0.036164 CGGTGAACCCATGGAGTCAA 59.964 55.0 15.22 0.00 0.00 3.18 F
372 373 0.106918 AAAACAGGACTGCGGGTTGA 60.107 50.0 0.00 0.00 0.00 3.18 F
374 375 0.110486 AACAGGACTGCGGGTTGAAT 59.890 50.0 0.00 0.00 0.00 2.57 F
502 503 0.630261 GCTCGTACGACGTAAAACCG 59.370 55.0 15.28 9.21 43.14 4.44 F
1997 2058 0.732880 ATTCACGACTTCGCCGTCAG 60.733 55.0 0.00 0.00 44.43 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1119 1180 0.321919 TGACAACAGCAGAGCCATCC 60.322 55.000 0.00 0.0 0.00 3.51 R
2292 2353 0.382515 GTATCTCCGAGAGCACGCTT 59.617 55.000 4.07 0.0 0.00 4.68 R
2415 2476 0.179092 GGTAGGCATACCGCGTCTTT 60.179 55.000 12.49 0.0 42.16 2.52 R
2722 3629 1.666553 GGTGATGAACGTGCCGTGA 60.667 57.895 0.94 0.0 39.99 4.35 R
3130 4062 0.033011 GGGTGAGGAGGTGCTAGAGA 60.033 60.000 0.00 0.0 0.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.037847 GGCAAGGCCCAACTGGAT 59.962 61.111 0.00 0.00 44.06 3.41
25 26 2.054453 GGCAAGGCCCAACTGGATC 61.054 63.158 0.00 0.00 44.06 3.36
26 27 2.409870 GCAAGGCCCAACTGGATCG 61.410 63.158 0.00 0.00 37.39 3.69
27 28 2.044946 AAGGCCCAACTGGATCGC 60.045 61.111 0.00 0.00 37.39 4.58
28 29 3.976701 AAGGCCCAACTGGATCGCG 62.977 63.158 0.00 0.00 37.39 5.87
33 34 4.776322 CAACTGGATCGCGGCCCA 62.776 66.667 17.08 17.08 0.00 5.36
36 37 4.473520 CTGGATCGCGGCCCAGTT 62.474 66.667 27.96 0.26 43.71 3.16
37 38 3.078196 TGGATCGCGGCCCAGTTA 61.078 61.111 14.75 0.00 0.00 2.24
38 39 2.188469 GGATCGCGGCCCAGTTAA 59.812 61.111 6.13 0.00 0.00 2.01
39 40 1.887707 GGATCGCGGCCCAGTTAAG 60.888 63.158 6.13 0.00 0.00 1.85
40 41 2.513897 ATCGCGGCCCAGTTAAGC 60.514 61.111 6.13 0.00 0.00 3.09
43 44 3.497031 GCGGCCCAGTTAAGCGAC 61.497 66.667 0.00 0.00 0.00 5.19
44 45 2.818274 CGGCCCAGTTAAGCGACC 60.818 66.667 0.00 0.00 0.00 4.79
45 46 2.349755 GGCCCAGTTAAGCGACCA 59.650 61.111 0.00 0.00 0.00 4.02
46 47 1.302993 GGCCCAGTTAAGCGACCAA 60.303 57.895 0.00 0.00 0.00 3.67
47 48 1.305930 GGCCCAGTTAAGCGACCAAG 61.306 60.000 0.00 0.00 0.00 3.61
48 49 0.321298 GCCCAGTTAAGCGACCAAGA 60.321 55.000 0.00 0.00 0.00 3.02
49 50 1.880646 GCCCAGTTAAGCGACCAAGAA 60.881 52.381 0.00 0.00 0.00 2.52
50 51 1.804748 CCCAGTTAAGCGACCAAGAAC 59.195 52.381 0.00 0.00 0.00 3.01
51 52 1.459592 CCAGTTAAGCGACCAAGAACG 59.540 52.381 0.00 0.00 0.00 3.95
52 53 2.132762 CAGTTAAGCGACCAAGAACGT 58.867 47.619 0.00 0.00 0.00 3.99
53 54 3.311106 CAGTTAAGCGACCAAGAACGTA 58.689 45.455 0.00 0.00 0.00 3.57
54 55 3.364023 CAGTTAAGCGACCAAGAACGTAG 59.636 47.826 0.00 0.00 0.00 3.51
55 56 1.986698 TAAGCGACCAAGAACGTAGC 58.013 50.000 0.00 0.00 32.66 3.58
56 57 1.007336 AAGCGACCAAGAACGTAGCG 61.007 55.000 0.00 0.00 37.00 4.26
57 58 2.442188 GCGACCAAGAACGTAGCGG 61.442 63.158 0.00 0.00 0.00 5.52
58 59 1.080974 CGACCAAGAACGTAGCGGT 60.081 57.895 0.00 0.00 0.00 5.68
59 60 1.069378 CGACCAAGAACGTAGCGGTC 61.069 60.000 13.53 13.53 44.66 4.79
60 61 0.038892 GACCAAGAACGTAGCGGTCA 60.039 55.000 16.96 0.00 46.95 4.02
61 62 0.390124 ACCAAGAACGTAGCGGTCAA 59.610 50.000 9.27 0.00 46.95 3.18
62 63 1.001633 ACCAAGAACGTAGCGGTCAAT 59.998 47.619 9.27 0.00 46.95 2.57
63 64 1.659098 CCAAGAACGTAGCGGTCAATC 59.341 52.381 9.27 0.00 46.95 2.67
64 65 1.320555 CAAGAACGTAGCGGTCAATCG 59.679 52.381 9.27 0.00 46.95 3.34
65 66 0.806868 AGAACGTAGCGGTCAATCGA 59.193 50.000 9.27 0.00 46.95 3.59
66 67 1.189403 GAACGTAGCGGTCAATCGAG 58.811 55.000 1.41 0.00 43.67 4.04
67 68 0.524862 AACGTAGCGGTCAATCGAGT 59.475 50.000 0.00 0.00 0.00 4.18
68 69 0.098376 ACGTAGCGGTCAATCGAGTC 59.902 55.000 0.00 0.00 0.00 3.36
69 70 0.098200 CGTAGCGGTCAATCGAGTCA 59.902 55.000 0.00 0.00 0.00 3.41
70 71 1.466866 CGTAGCGGTCAATCGAGTCAA 60.467 52.381 0.00 0.00 0.00 3.18
71 72 2.794981 CGTAGCGGTCAATCGAGTCAAT 60.795 50.000 0.00 0.00 0.00 2.57
72 73 2.386661 AGCGGTCAATCGAGTCAATT 57.613 45.000 0.00 0.00 0.00 2.32
73 74 2.002586 AGCGGTCAATCGAGTCAATTG 58.997 47.619 0.00 0.00 35.81 2.32
74 75 1.062587 GCGGTCAATCGAGTCAATTGG 59.937 52.381 5.42 0.00 35.32 3.16
75 76 2.616960 CGGTCAATCGAGTCAATTGGA 58.383 47.619 5.42 0.00 35.32 3.53
76 77 2.604914 CGGTCAATCGAGTCAATTGGAG 59.395 50.000 5.42 0.00 35.32 3.86
77 78 3.676049 CGGTCAATCGAGTCAATTGGAGA 60.676 47.826 5.42 0.89 35.32 3.71
78 79 3.868077 GGTCAATCGAGTCAATTGGAGAG 59.132 47.826 5.42 0.00 35.32 3.20
79 80 4.382040 GGTCAATCGAGTCAATTGGAGAGA 60.382 45.833 5.42 1.60 35.32 3.10
80 81 4.564769 GTCAATCGAGTCAATTGGAGAGAC 59.435 45.833 5.42 4.00 35.32 3.36
81 82 4.220602 TCAATCGAGTCAATTGGAGAGACA 59.779 41.667 5.42 0.00 35.32 3.41
82 83 4.808414 ATCGAGTCAATTGGAGAGACAA 57.192 40.909 5.42 0.00 34.80 3.18
83 84 4.600692 TCGAGTCAATTGGAGAGACAAA 57.399 40.909 5.42 0.00 34.80 2.83
84 85 4.956085 TCGAGTCAATTGGAGAGACAAAA 58.044 39.130 5.42 0.00 34.80 2.44
85 86 5.551233 TCGAGTCAATTGGAGAGACAAAAT 58.449 37.500 5.42 0.00 34.80 1.82
86 87 5.997746 TCGAGTCAATTGGAGAGACAAAATT 59.002 36.000 5.42 0.00 34.80 1.82
87 88 6.486657 TCGAGTCAATTGGAGAGACAAAATTT 59.513 34.615 5.42 0.00 34.80 1.82
88 89 7.659799 TCGAGTCAATTGGAGAGACAAAATTTA 59.340 33.333 5.42 0.00 34.80 1.40
89 90 7.959651 CGAGTCAATTGGAGAGACAAAATTTAG 59.040 37.037 5.42 0.00 34.80 1.85
90 91 8.697507 AGTCAATTGGAGAGACAAAATTTAGT 57.302 30.769 5.42 0.00 34.80 2.24
91 92 9.793259 AGTCAATTGGAGAGACAAAATTTAGTA 57.207 29.630 5.42 0.00 34.80 1.82
92 93 9.827411 GTCAATTGGAGAGACAAAATTTAGTAC 57.173 33.333 5.42 0.00 33.48 2.73
93 94 9.010029 TCAATTGGAGAGACAAAATTTAGTACC 57.990 33.333 5.42 0.00 33.48 3.34
94 95 8.792633 CAATTGGAGAGACAAAATTTAGTACCA 58.207 33.333 0.00 0.00 33.48 3.25
95 96 7.739498 TTGGAGAGACAAAATTTAGTACCAC 57.261 36.000 0.00 0.00 0.00 4.16
96 97 6.235664 TGGAGAGACAAAATTTAGTACCACC 58.764 40.000 0.00 0.00 0.00 4.61
97 98 6.043938 TGGAGAGACAAAATTTAGTACCACCT 59.956 38.462 0.00 0.00 0.00 4.00
98 99 6.594547 GGAGAGACAAAATTTAGTACCACCTC 59.405 42.308 0.00 0.00 0.00 3.85
99 100 6.164176 AGAGACAAAATTTAGTACCACCTCG 58.836 40.000 0.00 0.00 0.00 4.63
100 101 6.014840 AGAGACAAAATTTAGTACCACCTCGA 60.015 38.462 0.00 0.00 0.00 4.04
101 102 6.527423 AGACAAAATTTAGTACCACCTCGAA 58.473 36.000 0.00 0.00 0.00 3.71
102 103 7.166167 AGACAAAATTTAGTACCACCTCGAAT 58.834 34.615 0.00 0.00 0.00 3.34
103 104 8.316214 AGACAAAATTTAGTACCACCTCGAATA 58.684 33.333 0.00 0.00 0.00 1.75
104 105 9.106070 GACAAAATTTAGTACCACCTCGAATAT 57.894 33.333 0.00 0.00 0.00 1.28
105 106 8.889717 ACAAAATTTAGTACCACCTCGAATATG 58.110 33.333 0.00 0.00 0.00 1.78
106 107 8.889717 CAAAATTTAGTACCACCTCGAATATGT 58.110 33.333 0.00 0.00 0.00 2.29
107 108 9.457436 AAAATTTAGTACCACCTCGAATATGTT 57.543 29.630 0.00 0.00 0.00 2.71
108 109 9.457436 AAATTTAGTACCACCTCGAATATGTTT 57.543 29.630 0.00 0.00 0.00 2.83
109 110 9.457436 AATTTAGTACCACCTCGAATATGTTTT 57.543 29.630 0.00 0.00 0.00 2.43
111 112 9.941325 TTTAGTACCACCTCGAATATGTTTTAA 57.059 29.630 0.00 0.00 0.00 1.52
112 113 9.941325 TTAGTACCACCTCGAATATGTTTTAAA 57.059 29.630 0.00 0.00 0.00 1.52
114 115 9.457436 AGTACCACCTCGAATATGTTTTAAATT 57.543 29.630 0.00 0.00 0.00 1.82
146 147 7.812309 AAAGCGTAAAATTATGGAGAAAAGC 57.188 32.000 0.00 0.00 0.00 3.51
147 148 5.569413 AGCGTAAAATTATGGAGAAAAGCG 58.431 37.500 0.00 0.00 0.00 4.68
148 149 5.123344 AGCGTAAAATTATGGAGAAAAGCGT 59.877 36.000 0.00 0.00 0.00 5.07
149 150 6.314400 AGCGTAAAATTATGGAGAAAAGCGTA 59.686 34.615 0.00 0.00 0.00 4.42
150 151 7.012044 AGCGTAAAATTATGGAGAAAAGCGTAT 59.988 33.333 0.00 0.00 0.00 3.06
151 152 7.642586 GCGTAAAATTATGGAGAAAAGCGTATT 59.357 33.333 0.00 0.00 0.00 1.89
152 153 8.943925 CGTAAAATTATGGAGAAAAGCGTATTG 58.056 33.333 0.00 0.00 0.00 1.90
153 154 9.783256 GTAAAATTATGGAGAAAAGCGTATTGT 57.217 29.630 0.00 0.00 0.00 2.71
154 155 8.687824 AAAATTATGGAGAAAAGCGTATTGTG 57.312 30.769 0.00 0.00 0.00 3.33
155 156 7.624360 AATTATGGAGAAAAGCGTATTGTGA 57.376 32.000 0.00 0.00 0.00 3.58
156 157 4.946784 ATGGAGAAAAGCGTATTGTGAC 57.053 40.909 0.00 0.00 0.00 3.67
157 158 2.734606 TGGAGAAAAGCGTATTGTGACG 59.265 45.455 0.00 0.00 45.70 4.35
158 159 2.093783 GGAGAAAAGCGTATTGTGACGG 59.906 50.000 0.00 0.00 43.13 4.79
163 164 3.941194 GCGTATTGTGACGGTGAAC 57.059 52.632 0.00 0.00 43.13 3.18
164 165 0.441145 GCGTATTGTGACGGTGAACC 59.559 55.000 0.00 0.00 43.13 3.62
165 166 1.073177 CGTATTGTGACGGTGAACCC 58.927 55.000 0.00 0.00 39.19 4.11
166 167 1.605968 CGTATTGTGACGGTGAACCCA 60.606 52.381 0.00 0.00 39.19 4.51
167 168 2.706890 GTATTGTGACGGTGAACCCAT 58.293 47.619 0.00 0.00 0.00 4.00
168 169 1.533625 ATTGTGACGGTGAACCCATG 58.466 50.000 0.00 0.00 0.00 3.66
169 170 0.536233 TTGTGACGGTGAACCCATGG 60.536 55.000 4.14 4.14 0.00 3.66
170 171 1.373435 GTGACGGTGAACCCATGGA 59.627 57.895 15.22 0.00 0.00 3.41
171 172 0.673644 GTGACGGTGAACCCATGGAG 60.674 60.000 15.22 5.95 0.00 3.86
172 173 1.125093 TGACGGTGAACCCATGGAGT 61.125 55.000 15.22 6.69 0.00 3.85
173 174 0.391263 GACGGTGAACCCATGGAGTC 60.391 60.000 15.22 10.53 0.00 3.36
174 175 1.125093 ACGGTGAACCCATGGAGTCA 61.125 55.000 15.22 13.24 0.00 3.41
175 176 0.036164 CGGTGAACCCATGGAGTCAA 59.964 55.000 15.22 0.00 0.00 3.18
176 177 1.340017 CGGTGAACCCATGGAGTCAAT 60.340 52.381 15.22 0.00 0.00 2.57
177 178 2.369394 GGTGAACCCATGGAGTCAATC 58.631 52.381 15.22 8.14 0.00 2.67
214 215 8.727100 ATTATTAGGGATAGATATGCGGATGA 57.273 34.615 0.00 0.00 0.00 2.92
215 216 8.547481 TTATTAGGGATAGATATGCGGATGAA 57.453 34.615 0.00 0.00 0.00 2.57
216 217 7.623999 ATTAGGGATAGATATGCGGATGAAT 57.376 36.000 0.00 0.00 0.00 2.57
217 218 5.965033 AGGGATAGATATGCGGATGAATT 57.035 39.130 0.00 0.00 0.00 2.17
218 219 8.547481 TTAGGGATAGATATGCGGATGAATTA 57.453 34.615 0.00 0.00 0.00 1.40
219 220 6.821388 AGGGATAGATATGCGGATGAATTAC 58.179 40.000 0.00 0.00 0.00 1.89
220 221 5.992217 GGGATAGATATGCGGATGAATTACC 59.008 44.000 0.00 0.00 0.00 2.85
221 222 6.183361 GGGATAGATATGCGGATGAATTACCT 60.183 42.308 0.00 0.00 0.00 3.08
222 223 7.015292 GGGATAGATATGCGGATGAATTACCTA 59.985 40.741 0.00 0.00 0.00 3.08
223 224 8.421784 GGATAGATATGCGGATGAATTACCTAA 58.578 37.037 0.00 0.00 0.00 2.69
224 225 9.817809 GATAGATATGCGGATGAATTACCTAAA 57.182 33.333 0.00 0.00 0.00 1.85
226 227 8.324163 AGATATGCGGATGAATTACCTAAAAC 57.676 34.615 0.00 0.00 0.00 2.43
227 228 7.936847 AGATATGCGGATGAATTACCTAAAACA 59.063 33.333 0.00 0.00 0.00 2.83
228 229 6.959639 ATGCGGATGAATTACCTAAAACAT 57.040 33.333 0.00 0.00 0.00 2.71
229 230 6.371809 TGCGGATGAATTACCTAAAACATC 57.628 37.500 0.00 0.00 34.37 3.06
230 231 5.007234 TGCGGATGAATTACCTAAAACATCG 59.993 40.000 0.00 0.00 35.12 3.84
231 232 5.560183 GCGGATGAATTACCTAAAACATCGG 60.560 44.000 0.00 0.00 36.50 4.18
232 233 5.049680 CGGATGAATTACCTAAAACATCGGG 60.050 44.000 0.00 0.00 35.12 5.14
233 234 5.826208 GGATGAATTACCTAAAACATCGGGT 59.174 40.000 0.00 0.00 35.12 5.28
234 235 6.320418 GGATGAATTACCTAAAACATCGGGTT 59.680 38.462 0.00 0.00 42.98 4.11
263 264 7.763734 TCGAAAAATGTAAAATAACGGTTCG 57.236 32.000 0.00 0.00 36.41 3.95
264 265 6.796072 TCGAAAAATGTAAAATAACGGTTCGG 59.204 34.615 0.00 0.00 35.92 4.30
265 266 6.032670 CGAAAAATGTAAAATAACGGTTCGGG 59.967 38.462 0.00 0.00 32.65 5.14
266 267 5.963176 AAATGTAAAATAACGGTTCGGGT 57.037 34.783 0.00 0.00 0.00 5.28
267 268 4.950434 ATGTAAAATAACGGTTCGGGTG 57.050 40.909 0.00 0.00 0.00 4.61
268 269 3.737850 TGTAAAATAACGGTTCGGGTGT 58.262 40.909 0.00 0.00 0.00 4.16
269 270 3.497640 TGTAAAATAACGGTTCGGGTGTG 59.502 43.478 0.00 0.00 0.00 3.82
270 271 2.547299 AAATAACGGTTCGGGTGTGA 57.453 45.000 0.00 0.00 0.00 3.58
271 272 1.799544 AATAACGGTTCGGGTGTGAC 58.200 50.000 0.00 0.00 0.00 3.67
272 273 0.971386 ATAACGGTTCGGGTGTGACT 59.029 50.000 0.00 0.00 0.00 3.41
273 274 0.752054 TAACGGTTCGGGTGTGACTT 59.248 50.000 0.00 0.00 0.00 3.01
274 275 0.752054 AACGGTTCGGGTGTGACTTA 59.248 50.000 0.00 0.00 0.00 2.24
275 276 0.752054 ACGGTTCGGGTGTGACTTAA 59.248 50.000 0.00 0.00 0.00 1.85
276 277 1.138661 ACGGTTCGGGTGTGACTTAAA 59.861 47.619 0.00 0.00 0.00 1.52
277 278 2.224354 ACGGTTCGGGTGTGACTTAAAT 60.224 45.455 0.00 0.00 0.00 1.40
278 279 2.414138 CGGTTCGGGTGTGACTTAAATC 59.586 50.000 0.00 0.00 0.00 2.17
279 280 2.745821 GGTTCGGGTGTGACTTAAATCC 59.254 50.000 0.00 0.00 0.00 3.01
280 281 2.373540 TCGGGTGTGACTTAAATCCG 57.626 50.000 0.00 0.00 37.61 4.18
281 282 1.066716 TCGGGTGTGACTTAAATCCGG 60.067 52.381 0.00 0.00 36.99 5.14
282 283 1.066716 CGGGTGTGACTTAAATCCGGA 60.067 52.381 6.61 6.61 33.27 5.14
283 284 2.353323 GGGTGTGACTTAAATCCGGAC 58.647 52.381 6.12 0.00 0.00 4.79
284 285 1.997606 GGTGTGACTTAAATCCGGACG 59.002 52.381 6.12 0.00 0.00 4.79
285 286 1.997606 GTGTGACTTAAATCCGGACGG 59.002 52.381 6.12 3.96 0.00 4.79
286 287 1.004595 GTGACTTAAATCCGGACGGC 58.995 55.000 6.12 0.00 34.68 5.68
287 288 0.458889 TGACTTAAATCCGGACGGCG 60.459 55.000 6.12 4.80 34.68 6.46
288 289 1.149964 GACTTAAATCCGGACGGCGG 61.150 60.000 6.12 0.00 34.68 6.13
289 290 1.885850 CTTAAATCCGGACGGCGGG 60.886 63.158 6.12 8.96 35.92 6.13
290 291 2.582734 CTTAAATCCGGACGGCGGGT 62.583 60.000 15.41 0.00 36.04 5.28
291 292 2.182732 TTAAATCCGGACGGCGGGTT 62.183 55.000 15.41 3.28 36.04 4.11
292 293 2.855880 TAAATCCGGACGGCGGGTTG 62.856 60.000 15.41 0.00 36.04 3.77
295 296 4.770874 CCGGACGGCGGGTTGATT 62.771 66.667 13.24 0.00 0.00 2.57
296 297 2.744709 CGGACGGCGGGTTGATTT 60.745 61.111 13.24 0.00 0.00 2.17
297 298 2.746803 CGGACGGCGGGTTGATTTC 61.747 63.158 13.24 0.00 0.00 2.17
298 299 1.673009 GGACGGCGGGTTGATTTCA 60.673 57.895 13.24 0.00 0.00 2.69
299 300 1.238625 GGACGGCGGGTTGATTTCAA 61.239 55.000 13.24 0.00 0.00 2.69
300 301 0.168128 GACGGCGGGTTGATTTCAAG 59.832 55.000 13.24 0.00 36.39 3.02
311 312 5.834239 GTTGATTTCAAGCAAAGACATGG 57.166 39.130 0.00 0.00 35.91 3.66
312 313 4.524316 TGATTTCAAGCAAAGACATGGG 57.476 40.909 0.00 0.00 0.00 4.00
313 314 2.818130 TTTCAAGCAAAGACATGGGC 57.182 45.000 0.00 0.00 0.00 5.36
314 315 1.999648 TTCAAGCAAAGACATGGGCT 58.000 45.000 0.00 0.00 38.45 5.19
315 316 1.999648 TCAAGCAAAGACATGGGCTT 58.000 45.000 0.00 1.43 46.71 4.35
316 317 2.318908 TCAAGCAAAGACATGGGCTTT 58.681 42.857 9.28 9.28 43.56 3.51
317 318 2.699846 TCAAGCAAAGACATGGGCTTTT 59.300 40.909 11.68 0.00 43.56 2.27
318 319 2.803956 CAAGCAAAGACATGGGCTTTTG 59.196 45.455 11.68 9.87 43.56 2.44
319 320 2.041701 AGCAAAGACATGGGCTTTTGT 58.958 42.857 11.68 2.22 33.56 2.83
320 321 2.137523 GCAAAGACATGGGCTTTTGTG 58.862 47.619 11.68 5.22 33.56 3.33
321 322 2.483538 GCAAAGACATGGGCTTTTGTGT 60.484 45.455 11.68 0.00 33.56 3.72
322 323 3.243704 GCAAAGACATGGGCTTTTGTGTA 60.244 43.478 11.68 0.00 33.56 2.90
323 324 4.739137 GCAAAGACATGGGCTTTTGTGTAA 60.739 41.667 11.68 0.00 33.56 2.41
324 325 5.355596 CAAAGACATGGGCTTTTGTGTAAA 58.644 37.500 11.68 0.00 33.56 2.01
325 326 5.606348 AAGACATGGGCTTTTGTGTAAAA 57.394 34.783 0.00 0.00 34.75 1.52
326 327 5.806654 AGACATGGGCTTTTGTGTAAAAT 57.193 34.783 0.00 0.00 35.39 1.82
327 328 6.909550 AGACATGGGCTTTTGTGTAAAATA 57.090 33.333 0.00 0.00 35.39 1.40
328 329 6.687604 AGACATGGGCTTTTGTGTAAAATAC 58.312 36.000 0.00 0.00 35.39 1.89
329 330 5.465935 ACATGGGCTTTTGTGTAAAATACG 58.534 37.500 0.00 0.00 35.39 3.06
330 331 5.241949 ACATGGGCTTTTGTGTAAAATACGA 59.758 36.000 0.00 0.00 35.39 3.43
331 332 5.769484 TGGGCTTTTGTGTAAAATACGAA 57.231 34.783 0.00 0.00 35.39 3.85
332 333 6.145338 TGGGCTTTTGTGTAAAATACGAAA 57.855 33.333 0.00 0.00 35.39 3.46
333 334 6.570692 TGGGCTTTTGTGTAAAATACGAAAA 58.429 32.000 0.00 0.00 35.39 2.29
334 335 7.210873 TGGGCTTTTGTGTAAAATACGAAAAT 58.789 30.769 0.00 0.00 35.39 1.82
335 336 8.358148 TGGGCTTTTGTGTAAAATACGAAAATA 58.642 29.630 0.00 0.00 35.39 1.40
336 337 9.194271 GGGCTTTTGTGTAAAATACGAAAATAA 57.806 29.630 0.00 0.00 35.39 1.40
337 338 9.998381 GGCTTTTGTGTAAAATACGAAAATAAC 57.002 29.630 0.00 0.00 35.39 1.89
338 339 9.702949 GCTTTTGTGTAAAATACGAAAATAACG 57.297 29.630 0.00 0.00 35.39 3.18
367 368 5.427036 TTTAACTTAAAACAGGACTGCGG 57.573 39.130 0.00 0.00 0.00 5.69
368 369 1.892209 ACTTAAAACAGGACTGCGGG 58.108 50.000 0.00 0.00 0.00 6.13
369 370 1.142262 ACTTAAAACAGGACTGCGGGT 59.858 47.619 0.00 0.00 0.00 5.28
370 371 2.227194 CTTAAAACAGGACTGCGGGTT 58.773 47.619 0.00 0.00 0.00 4.11
371 372 1.600023 TAAAACAGGACTGCGGGTTG 58.400 50.000 0.00 0.00 0.00 3.77
372 373 0.106918 AAAACAGGACTGCGGGTTGA 60.107 50.000 0.00 0.00 0.00 3.18
373 374 0.106918 AAACAGGACTGCGGGTTGAA 60.107 50.000 0.00 0.00 0.00 2.69
374 375 0.110486 AACAGGACTGCGGGTTGAAT 59.890 50.000 0.00 0.00 0.00 2.57
375 376 0.110486 ACAGGACTGCGGGTTGAATT 59.890 50.000 0.00 0.00 0.00 2.17
376 377 0.804989 CAGGACTGCGGGTTGAATTC 59.195 55.000 0.00 0.00 0.00 2.17
377 378 0.693049 AGGACTGCGGGTTGAATTCT 59.307 50.000 7.05 0.00 0.00 2.40
378 379 1.087501 GGACTGCGGGTTGAATTCTC 58.912 55.000 7.05 0.06 0.00 2.87
379 380 1.339151 GGACTGCGGGTTGAATTCTCT 60.339 52.381 7.05 0.00 0.00 3.10
380 381 1.734465 GACTGCGGGTTGAATTCTCTG 59.266 52.381 7.05 3.16 0.00 3.35
381 382 1.347707 ACTGCGGGTTGAATTCTCTGA 59.652 47.619 7.05 0.00 0.00 3.27
382 383 2.224523 ACTGCGGGTTGAATTCTCTGAA 60.225 45.455 7.05 0.00 0.00 3.02
383 384 2.813754 CTGCGGGTTGAATTCTCTGAAA 59.186 45.455 7.05 0.00 0.00 2.69
384 385 2.552315 TGCGGGTTGAATTCTCTGAAAC 59.448 45.455 7.05 2.19 0.00 2.78
385 386 2.552315 GCGGGTTGAATTCTCTGAAACA 59.448 45.455 7.05 0.00 0.00 2.83
386 387 3.365364 GCGGGTTGAATTCTCTGAAACAG 60.365 47.826 7.05 0.00 0.00 3.16
387 388 4.065088 CGGGTTGAATTCTCTGAAACAGA 58.935 43.478 7.05 0.00 38.25 3.41
388 389 4.515191 CGGGTTGAATTCTCTGAAACAGAA 59.485 41.667 7.05 0.00 40.18 3.02
389 390 5.334414 CGGGTTGAATTCTCTGAAACAGAAG 60.334 44.000 7.05 0.00 40.18 2.85
390 391 5.048434 GGGTTGAATTCTCTGAAACAGAAGG 60.048 44.000 7.05 0.00 40.18 3.46
391 392 5.765182 GGTTGAATTCTCTGAAACAGAAGGA 59.235 40.000 7.05 0.00 40.18 3.36
392 393 6.293680 GGTTGAATTCTCTGAAACAGAAGGAC 60.294 42.308 7.05 0.00 40.18 3.85
393 394 6.179906 TGAATTCTCTGAAACAGAAGGACT 57.820 37.500 7.05 0.00 40.18 3.85
394 395 6.595682 TGAATTCTCTGAAACAGAAGGACTT 58.404 36.000 7.05 0.00 40.18 3.01
395 396 7.056635 TGAATTCTCTGAAACAGAAGGACTTT 58.943 34.615 7.05 0.00 40.18 2.66
396 397 7.557719 TGAATTCTCTGAAACAGAAGGACTTTT 59.442 33.333 7.05 0.00 40.18 2.27
397 398 8.980481 AATTCTCTGAAACAGAAGGACTTTTA 57.020 30.769 0.00 0.00 40.18 1.52
398 399 8.980481 ATTCTCTGAAACAGAAGGACTTTTAA 57.020 30.769 0.00 0.00 40.18 1.52
399 400 8.801882 TTCTCTGAAACAGAAGGACTTTTAAA 57.198 30.769 0.00 0.00 40.18 1.52
400 401 8.801882 TCTCTGAAACAGAAGGACTTTTAAAA 57.198 30.769 0.00 0.00 40.18 1.52
401 402 9.238368 TCTCTGAAACAGAAGGACTTTTAAAAA 57.762 29.630 1.66 0.00 40.18 1.94
421 422 4.974368 AAAAATATCATGACGGCCGAAA 57.026 36.364 35.90 20.14 0.00 3.46
422 423 4.552166 AAAATATCATGACGGCCGAAAG 57.448 40.909 35.90 18.27 0.00 2.62
423 424 3.469008 AATATCATGACGGCCGAAAGA 57.531 42.857 35.90 22.95 0.00 2.52
424 425 2.971660 TATCATGACGGCCGAAAGAA 57.028 45.000 35.90 14.61 0.00 2.52
425 426 2.107950 ATCATGACGGCCGAAAGAAA 57.892 45.000 35.90 12.83 0.00 2.52
426 427 2.107950 TCATGACGGCCGAAAGAAAT 57.892 45.000 35.90 7.12 0.00 2.17
427 428 2.006888 TCATGACGGCCGAAAGAAATC 58.993 47.619 35.90 17.86 0.00 2.17
428 429 2.009774 CATGACGGCCGAAAGAAATCT 58.990 47.619 35.90 5.18 0.00 2.40
429 430 2.178912 TGACGGCCGAAAGAAATCTT 57.821 45.000 35.90 4.22 37.91 2.40
430 431 3.322211 TGACGGCCGAAAGAAATCTTA 57.678 42.857 35.90 0.00 34.61 2.10
431 432 3.869065 TGACGGCCGAAAGAAATCTTAT 58.131 40.909 35.90 3.27 34.61 1.73
432 433 4.258543 TGACGGCCGAAAGAAATCTTATT 58.741 39.130 35.90 2.70 34.61 1.40
433 434 4.698304 TGACGGCCGAAAGAAATCTTATTT 59.302 37.500 35.90 1.85 34.61 1.40
434 435 5.875910 TGACGGCCGAAAGAAATCTTATTTA 59.124 36.000 35.90 0.00 34.61 1.40
435 436 6.115450 ACGGCCGAAAGAAATCTTATTTAC 57.885 37.500 35.90 0.00 34.61 2.01
436 437 5.878669 ACGGCCGAAAGAAATCTTATTTACT 59.121 36.000 35.90 0.00 34.61 2.24
437 438 6.373495 ACGGCCGAAAGAAATCTTATTTACTT 59.627 34.615 35.90 0.00 34.61 2.24
438 439 7.094506 ACGGCCGAAAGAAATCTTATTTACTTT 60.095 33.333 35.90 0.00 34.61 2.66
439 440 8.392612 CGGCCGAAAGAAATCTTATTTACTTTA 58.607 33.333 24.07 0.00 34.61 1.85
486 487 1.224069 ATGTGACGTGCAGTGTGCTC 61.224 55.000 0.00 0.00 45.31 4.26
494 495 2.426183 GCAGTGTGCTCGTACGACG 61.426 63.158 15.28 11.74 40.96 5.12
502 503 0.630261 GCTCGTACGACGTAAAACCG 59.370 55.000 15.28 9.21 43.14 4.44
519 520 3.036075 ACCGAAGTTAAAGTTAGCGCT 57.964 42.857 17.26 17.26 0.00 5.92
591 592 5.469421 GCATCATAGAGAAGTTCTGGAATGG 59.531 44.000 10.90 1.46 36.61 3.16
592 593 5.620738 TCATAGAGAAGTTCTGGAATGGG 57.379 43.478 10.90 0.00 36.61 4.00
593 594 5.280499 TCATAGAGAAGTTCTGGAATGGGA 58.720 41.667 10.90 0.00 36.61 4.37
697 703 1.884464 CTGTGCAGCACTGACACGT 60.884 57.895 25.83 0.00 39.06 4.49
856 900 3.071023 TCCGCCTCCTATAAATTCCACTG 59.929 47.826 0.00 0.00 0.00 3.66
861 905 3.817647 CTCCTATAAATTCCACTGCCAGC 59.182 47.826 0.00 0.00 0.00 4.85
911 955 2.422231 CCTCCCACTCCTCAGCTCG 61.422 68.421 0.00 0.00 0.00 5.03
996 1057 3.556365 CGATCTAGCTCGAGACACAACTA 59.444 47.826 18.75 5.83 41.12 2.24
1112 1173 1.968050 AACCCTAACGATCCCCGCAG 61.968 60.000 0.00 0.00 43.32 5.18
1244 1305 0.966370 GTGGAGGACAGGCTAGTCGT 60.966 60.000 10.56 10.56 39.42 4.34
1251 1312 1.141881 CAGGCTAGTCGTCGGCATT 59.858 57.895 0.00 0.00 0.00 3.56
1303 1364 3.157217 GATCCGGCCGTGCAGATCT 62.157 63.158 25.70 5.18 37.11 2.75
1645 1706 2.602267 TCTTCGGGGCAAGGTCGA 60.602 61.111 0.00 0.00 0.00 4.20
1980 2041 1.732259 GTCGACGAGCCAACAATGATT 59.268 47.619 0.00 0.00 0.00 2.57
1997 2058 0.732880 ATTCACGACTTCGCCGTCAG 60.733 55.000 0.00 0.00 44.43 3.51
2067 2128 3.083349 ATGGTGCTAGGCGGCTCA 61.083 61.111 17.67 7.37 0.00 4.26
2139 2200 3.127533 GCTGCCAACGCTTCGGAT 61.128 61.111 0.00 0.00 35.36 4.18
2292 2353 2.354401 CCAGGAGCAGAGCTTCCGA 61.354 63.158 0.00 0.00 39.88 4.55
2443 2504 0.969894 GTATGCCTACCTCGCCATCT 59.030 55.000 0.00 0.00 0.00 2.90
2627 3532 4.170062 CGACGAGAGCCGCGGTAA 62.170 66.667 28.70 0.00 43.32 2.85
2797 3704 3.428413 GCTAGCTAGCTACTACTCCCT 57.572 52.381 33.71 0.00 45.62 4.20
2798 3705 3.758425 GCTAGCTAGCTACTACTCCCTT 58.242 50.000 33.71 0.00 45.62 3.95
2799 3706 3.754850 GCTAGCTAGCTACTACTCCCTTC 59.245 52.174 33.71 4.16 45.62 3.46
2800 3707 3.232720 AGCTAGCTACTACTCCCTTCC 57.767 52.381 17.69 0.00 0.00 3.46
2801 3708 2.787035 AGCTAGCTACTACTCCCTTCCT 59.213 50.000 17.69 0.00 0.00 3.36
2802 3709 3.205733 AGCTAGCTACTACTCCCTTCCTT 59.794 47.826 17.69 0.00 0.00 3.36
2803 3710 3.570975 GCTAGCTACTACTCCCTTCCTTC 59.429 52.174 7.70 0.00 0.00 3.46
2804 3711 4.690539 GCTAGCTACTACTCCCTTCCTTCT 60.691 50.000 7.70 0.00 0.00 2.85
2805 3712 5.456474 GCTAGCTACTACTCCCTTCCTTCTA 60.456 48.000 7.70 0.00 0.00 2.10
2806 3713 5.469210 AGCTACTACTCCCTTCCTTCTAA 57.531 43.478 0.00 0.00 0.00 2.10
2807 3714 5.840081 AGCTACTACTCCCTTCCTTCTAAA 58.160 41.667 0.00 0.00 0.00 1.85
2808 3715 6.445577 AGCTACTACTCCCTTCCTTCTAAAT 58.554 40.000 0.00 0.00 0.00 1.40
2809 3716 6.904093 AGCTACTACTCCCTTCCTTCTAAATT 59.096 38.462 0.00 0.00 0.00 1.82
2810 3717 8.066247 AGCTACTACTCCCTTCCTTCTAAATTA 58.934 37.037 0.00 0.00 0.00 1.40
2811 3718 8.143193 GCTACTACTCCCTTCCTTCTAAATTAC 58.857 40.741 0.00 0.00 0.00 1.89
2812 3719 9.423964 CTACTACTCCCTTCCTTCTAAATTACT 57.576 37.037 0.00 0.00 0.00 2.24
2813 3720 8.308851 ACTACTCCCTTCCTTCTAAATTACTC 57.691 38.462 0.00 0.00 0.00 2.59
2814 3721 6.223351 ACTCCCTTCCTTCTAAATTACTCG 57.777 41.667 0.00 0.00 0.00 4.18
2815 3722 5.720520 ACTCCCTTCCTTCTAAATTACTCGT 59.279 40.000 0.00 0.00 0.00 4.18
2816 3723 6.127394 ACTCCCTTCCTTCTAAATTACTCGTC 60.127 42.308 0.00 0.00 0.00 4.20
2817 3724 5.041940 CCCTTCCTTCTAAATTACTCGTCG 58.958 45.833 0.00 0.00 0.00 5.12
2818 3725 4.503370 CCTTCCTTCTAAATTACTCGTCGC 59.497 45.833 0.00 0.00 0.00 5.19
2819 3726 4.707030 TCCTTCTAAATTACTCGTCGCA 57.293 40.909 0.00 0.00 0.00 5.10
2820 3727 5.063180 TCCTTCTAAATTACTCGTCGCAA 57.937 39.130 0.00 0.00 0.00 4.85
2821 3728 5.472148 TCCTTCTAAATTACTCGTCGCAAA 58.528 37.500 0.00 0.00 0.00 3.68
2822 3729 5.927689 TCCTTCTAAATTACTCGTCGCAAAA 59.072 36.000 0.00 0.00 0.00 2.44
2823 3730 6.424509 TCCTTCTAAATTACTCGTCGCAAAAA 59.575 34.615 0.00 0.00 0.00 1.94
2824 3731 7.118680 TCCTTCTAAATTACTCGTCGCAAAAAT 59.881 33.333 0.00 0.00 0.00 1.82
2825 3732 7.216317 CCTTCTAAATTACTCGTCGCAAAAATG 59.784 37.037 0.00 0.00 0.00 2.32
2826 3733 7.354025 TCTAAATTACTCGTCGCAAAAATGA 57.646 32.000 0.00 0.00 0.00 2.57
2827 3734 7.970384 TCTAAATTACTCGTCGCAAAAATGAT 58.030 30.769 0.00 0.00 0.00 2.45
2828 3735 8.114290 TCTAAATTACTCGTCGCAAAAATGATC 58.886 33.333 0.00 0.00 0.00 2.92
2829 3736 6.422776 AATTACTCGTCGCAAAAATGATCT 57.577 33.333 0.00 0.00 0.00 2.75
2830 3737 7.534085 AATTACTCGTCGCAAAAATGATCTA 57.466 32.000 0.00 0.00 0.00 1.98
2831 3738 4.842139 ACTCGTCGCAAAAATGATCTAC 57.158 40.909 0.00 0.00 0.00 2.59
2832 3739 4.242475 ACTCGTCGCAAAAATGATCTACA 58.758 39.130 0.00 0.00 0.00 2.74
2833 3740 4.870426 ACTCGTCGCAAAAATGATCTACAT 59.130 37.500 0.00 0.00 41.45 2.29
2834 3741 6.040247 ACTCGTCGCAAAAATGATCTACATA 58.960 36.000 0.00 0.00 38.38 2.29
2835 3742 6.701841 ACTCGTCGCAAAAATGATCTACATAT 59.298 34.615 0.00 0.00 38.38 1.78
2836 3743 7.865889 ACTCGTCGCAAAAATGATCTACATATA 59.134 33.333 0.00 0.00 38.38 0.86
2837 3744 8.757164 TCGTCGCAAAAATGATCTACATATAT 57.243 30.769 0.00 0.00 38.38 0.86
2838 3745 8.860128 TCGTCGCAAAAATGATCTACATATATC 58.140 33.333 0.00 0.00 38.38 1.63
2839 3746 8.864024 CGTCGCAAAAATGATCTACATATATCT 58.136 33.333 0.00 0.00 38.38 1.98
2866 3773 7.687005 TTTTGCAACAAGTAATTTAGAACGG 57.313 32.000 0.00 0.00 0.00 4.44
2867 3774 6.621316 TTGCAACAAGTAATTTAGAACGGA 57.379 33.333 0.00 0.00 0.00 4.69
2868 3775 6.236017 TGCAACAAGTAATTTAGAACGGAG 57.764 37.500 0.00 0.00 0.00 4.63
2869 3776 5.180492 TGCAACAAGTAATTTAGAACGGAGG 59.820 40.000 0.00 0.00 0.00 4.30
2870 3777 5.391629 GCAACAAGTAATTTAGAACGGAGGG 60.392 44.000 0.00 0.00 0.00 4.30
2871 3778 5.750352 ACAAGTAATTTAGAACGGAGGGA 57.250 39.130 0.00 0.00 0.00 4.20
2872 3779 5.731591 ACAAGTAATTTAGAACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
2873 3780 5.247792 ACAAGTAATTTAGAACGGAGGGAGT 59.752 40.000 0.00 0.00 0.00 3.85
2874 3781 6.438425 ACAAGTAATTTAGAACGGAGGGAGTA 59.562 38.462 0.00 0.00 0.00 2.59
2875 3782 6.462552 AGTAATTTAGAACGGAGGGAGTAC 57.537 41.667 0.00 0.00 0.00 2.73
2876 3783 6.193504 AGTAATTTAGAACGGAGGGAGTACT 58.806 40.000 0.00 0.00 0.00 2.73
2929 3836 9.323985 ACGAATTAGGTAGACTTACAGTAGTAG 57.676 37.037 0.00 0.00 0.00 2.57
2991 3920 4.545208 TCATTTGAACTCCATACGTCCA 57.455 40.909 0.00 0.00 0.00 4.02
2998 3927 6.911250 TGAACTCCATACGTCCATATGTAT 57.089 37.500 1.24 0.00 38.16 2.29
3002 3931 6.688578 ACTCCATACGTCCATATGTATTGAC 58.311 40.000 1.24 1.12 35.96 3.18
3006 3935 8.862085 TCCATACGTCCATATGTATTGACTTTA 58.138 33.333 1.24 0.00 35.96 1.85
3081 4013 6.673154 AACTACAAATTACATAAGGACCGC 57.327 37.500 0.00 0.00 0.00 5.68
3087 4019 2.902705 TACATAAGGACCGCCATGAC 57.097 50.000 0.00 0.00 36.29 3.06
3094 4026 1.349688 AGGACCGCCATGACAAAACTA 59.650 47.619 0.00 0.00 36.29 2.24
3095 4027 1.737793 GGACCGCCATGACAAAACTAG 59.262 52.381 0.00 0.00 0.00 2.57
3098 4030 3.074412 ACCGCCATGACAAAACTAGAAG 58.926 45.455 0.00 0.00 0.00 2.85
3103 4035 4.702131 GCCATGACAAAACTAGAAGGATGT 59.298 41.667 0.00 0.00 0.00 3.06
3106 4038 6.093219 CCATGACAAAACTAGAAGGATGTCAG 59.907 42.308 18.58 13.40 46.97 3.51
3108 4040 7.009179 TGACAAAACTAGAAGGATGTCAGAT 57.991 36.000 13.46 0.00 41.39 2.90
3109 4041 6.875726 TGACAAAACTAGAAGGATGTCAGATG 59.124 38.462 13.46 0.00 41.39 2.90
3111 4043 6.876257 ACAAAACTAGAAGGATGTCAGATGAC 59.124 38.462 6.01 6.01 44.97 3.06
3122 4054 3.111853 GTCAGATGACACCAACACTCA 57.888 47.619 8.09 0.00 44.18 3.41
3123 4055 3.668447 GTCAGATGACACCAACACTCAT 58.332 45.455 8.09 0.00 44.18 2.90
3127 4059 2.254546 TGACACCAACACTCATCACC 57.745 50.000 0.00 0.00 0.00 4.02
3128 4060 1.768275 TGACACCAACACTCATCACCT 59.232 47.619 0.00 0.00 0.00 4.00
3129 4061 2.146342 GACACCAACACTCATCACCTG 58.854 52.381 0.00 0.00 0.00 4.00
3130 4062 1.490490 ACACCAACACTCATCACCTGT 59.510 47.619 0.00 0.00 0.00 4.00
3131 4063 2.146342 CACCAACACTCATCACCTGTC 58.854 52.381 0.00 0.00 0.00 3.51
3132 4064 2.050144 ACCAACACTCATCACCTGTCT 58.950 47.619 0.00 0.00 0.00 3.41
3135 4067 3.511540 CCAACACTCATCACCTGTCTCTA 59.488 47.826 0.00 0.00 0.00 2.43
3136 4068 4.381398 CCAACACTCATCACCTGTCTCTAG 60.381 50.000 0.00 0.00 0.00 2.43
3168 4146 1.535226 CCAAACTCGACACACGACTCA 60.535 52.381 0.00 0.00 46.45 3.41
3169 4147 2.394708 CAAACTCGACACACGACTCAT 58.605 47.619 0.00 0.00 46.45 2.90
3213 4192 5.591877 GGACTTCTAATGTGGCTCATCAAAT 59.408 40.000 2.07 0.00 35.48 2.32
3228 4207 3.517296 TCAAATGTGAAGCCCTTACCA 57.483 42.857 0.00 0.00 0.00 3.25
3257 4236 2.526873 AGACCGGGGCAACACTCT 60.527 61.111 6.32 0.00 38.54 3.24
3259 4238 2.847234 ACCGGGGCAACACTCTGA 60.847 61.111 6.32 0.00 38.54 3.27
3265 4244 0.814010 GGGCAACACTCTGAACACGT 60.814 55.000 0.00 0.00 39.74 4.49
3284 4263 2.356069 CGTCATCGAACTCCAGATCTGA 59.644 50.000 24.62 9.26 39.71 3.27
3307 4286 1.287815 CCACCACGACTAAGACGCA 59.712 57.895 0.00 0.00 0.00 5.24
3312 4291 0.985549 CACGACTAAGACGCAGAAGC 59.014 55.000 0.00 0.00 37.42 3.86
3315 4294 1.401670 CGACTAAGACGCAGAAGCAGT 60.402 52.381 0.00 0.00 42.27 4.40
3316 4295 1.989165 GACTAAGACGCAGAAGCAGTG 59.011 52.381 0.00 0.00 42.27 3.66
3351 4330 0.250727 CCATGAACCACGAACCCAGT 60.251 55.000 0.00 0.00 0.00 4.00
3361 4340 1.136695 ACGAACCCAGTACACGTTTCA 59.863 47.619 0.00 0.00 33.48 2.69
3377 4356 6.202188 ACACGTTTCATCTTCTAAATGTCGTT 59.798 34.615 0.00 0.00 33.62 3.85
3407 4386 1.123077 ACAATCTGCATCCGCTCCTA 58.877 50.000 0.00 0.00 39.64 2.94
3418 4397 0.475044 CCGCTCCTAGACTACCTCCT 59.525 60.000 0.00 0.00 0.00 3.69
3429 4408 1.077212 TACCTCCTAAGCTCCGCGT 60.077 57.895 4.92 0.00 0.00 6.01
3524 4503 3.760151 CCATCATCCTTGCTTGAACAGAA 59.240 43.478 0.00 0.00 0.00 3.02
3548 4527 4.842948 TGATTTCCAAATTCATCCCCAACA 59.157 37.500 0.00 0.00 0.00 3.33
3574 4553 1.065418 ACCGATGGCCTGGTTAAAGAG 60.065 52.381 3.32 0.00 33.81 2.85
3575 4554 1.017387 CGATGGCCTGGTTAAAGAGC 58.983 55.000 3.32 0.00 0.00 4.09
3584 4563 3.259064 CTGGTTAAAGAGCGATCCGAAA 58.741 45.455 0.00 0.00 0.00 3.46
3600 4579 5.873179 TCCGAAAAATCTTTATTCAGCGT 57.127 34.783 0.00 0.00 0.00 5.07
3605 4584 4.500703 AAATCTTTATTCAGCGTCGTCG 57.499 40.909 0.00 0.00 40.37 5.12
3655 4645 4.339247 CCTGTGCATAATAAAAGGAGGTGG 59.661 45.833 0.00 0.00 0.00 4.61
3714 4704 8.980596 AGCTGGGAATTGTAAATGAATTGATTA 58.019 29.630 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.409870 CGATCCAGTTGGGCCTTGC 61.410 63.158 4.53 0.00 36.21 4.01
9 10 2.409870 GCGATCCAGTTGGGCCTTG 61.410 63.158 4.53 0.25 36.21 3.61
10 11 2.044946 GCGATCCAGTTGGGCCTT 60.045 61.111 4.53 0.00 36.21 4.35
11 12 4.473520 CGCGATCCAGTTGGGCCT 62.474 66.667 0.00 0.00 36.21 5.19
16 17 4.776322 TGGGCCGCGATCCAGTTG 62.776 66.667 8.23 0.00 0.00 3.16
17 18 4.473520 CTGGGCCGCGATCCAGTT 62.474 66.667 27.96 0.00 44.03 3.16
20 21 2.587322 CTTAACTGGGCCGCGATCCA 62.587 60.000 8.23 14.10 0.00 3.41
21 22 1.887707 CTTAACTGGGCCGCGATCC 60.888 63.158 8.23 9.46 0.00 3.36
22 23 2.534903 GCTTAACTGGGCCGCGATC 61.535 63.158 8.23 0.00 0.00 3.69
23 24 2.513897 GCTTAACTGGGCCGCGAT 60.514 61.111 8.23 0.00 0.00 4.58
26 27 3.497031 GTCGCTTAACTGGGCCGC 61.497 66.667 0.00 0.00 0.00 6.53
27 28 2.818274 GGTCGCTTAACTGGGCCG 60.818 66.667 0.00 0.00 0.00 6.13
28 29 1.302993 TTGGTCGCTTAACTGGGCC 60.303 57.895 0.00 0.00 0.00 5.80
29 30 0.321298 TCTTGGTCGCTTAACTGGGC 60.321 55.000 0.00 0.00 0.00 5.36
30 31 1.804748 GTTCTTGGTCGCTTAACTGGG 59.195 52.381 0.00 0.00 0.00 4.45
31 32 1.459592 CGTTCTTGGTCGCTTAACTGG 59.540 52.381 0.00 0.00 0.00 4.00
32 33 2.132762 ACGTTCTTGGTCGCTTAACTG 58.867 47.619 0.00 0.00 0.00 3.16
33 34 2.521105 ACGTTCTTGGTCGCTTAACT 57.479 45.000 0.00 0.00 0.00 2.24
34 35 2.091744 GCTACGTTCTTGGTCGCTTAAC 59.908 50.000 0.00 0.00 0.00 2.01
35 36 2.331194 GCTACGTTCTTGGTCGCTTAA 58.669 47.619 0.00 0.00 0.00 1.85
36 37 1.730121 CGCTACGTTCTTGGTCGCTTA 60.730 52.381 0.00 0.00 0.00 3.09
37 38 1.007336 CGCTACGTTCTTGGTCGCTT 61.007 55.000 0.00 0.00 0.00 4.68
38 39 1.443872 CGCTACGTTCTTGGTCGCT 60.444 57.895 0.00 0.00 0.00 4.93
39 40 2.442188 CCGCTACGTTCTTGGTCGC 61.442 63.158 0.00 0.00 0.00 5.19
40 41 1.069378 GACCGCTACGTTCTTGGTCG 61.069 60.000 11.50 0.00 39.67 4.79
41 42 2.734379 GACCGCTACGTTCTTGGTC 58.266 57.895 11.50 11.50 41.98 4.02
42 43 0.390124 TTGACCGCTACGTTCTTGGT 59.610 50.000 0.00 0.00 35.14 3.67
43 44 1.659098 GATTGACCGCTACGTTCTTGG 59.341 52.381 0.00 0.00 0.00 3.61
44 45 1.320555 CGATTGACCGCTACGTTCTTG 59.679 52.381 0.00 0.00 0.00 3.02
45 46 1.200716 TCGATTGACCGCTACGTTCTT 59.799 47.619 0.00 0.00 0.00 2.52
46 47 0.806868 TCGATTGACCGCTACGTTCT 59.193 50.000 0.00 0.00 0.00 3.01
47 48 1.189403 CTCGATTGACCGCTACGTTC 58.811 55.000 0.00 0.00 0.00 3.95
48 49 0.524862 ACTCGATTGACCGCTACGTT 59.475 50.000 0.00 0.00 0.00 3.99
49 50 0.098376 GACTCGATTGACCGCTACGT 59.902 55.000 0.00 0.00 0.00 3.57
50 51 0.098200 TGACTCGATTGACCGCTACG 59.902 55.000 0.00 0.00 0.00 3.51
51 52 2.273370 TTGACTCGATTGACCGCTAC 57.727 50.000 0.00 0.00 0.00 3.58
52 53 3.186909 CAATTGACTCGATTGACCGCTA 58.813 45.455 12.24 0.00 37.41 4.26
53 54 2.002586 CAATTGACTCGATTGACCGCT 58.997 47.619 12.24 0.00 37.41 5.52
54 55 1.062587 CCAATTGACTCGATTGACCGC 59.937 52.381 17.60 0.00 37.41 5.68
55 56 2.604914 CTCCAATTGACTCGATTGACCG 59.395 50.000 17.60 4.58 37.41 4.79
56 57 3.861840 TCTCCAATTGACTCGATTGACC 58.138 45.455 17.60 0.00 37.41 4.02
57 58 4.564769 GTCTCTCCAATTGACTCGATTGAC 59.435 45.833 17.60 6.38 37.41 3.18
58 59 4.220602 TGTCTCTCCAATTGACTCGATTGA 59.779 41.667 17.60 6.00 37.41 2.57
59 60 4.498241 TGTCTCTCCAATTGACTCGATTG 58.502 43.478 7.12 10.99 35.60 2.67
60 61 4.808414 TGTCTCTCCAATTGACTCGATT 57.192 40.909 7.12 0.00 0.00 3.34
61 62 4.808414 TTGTCTCTCCAATTGACTCGAT 57.192 40.909 7.12 0.00 0.00 3.59
62 63 4.600692 TTTGTCTCTCCAATTGACTCGA 57.399 40.909 7.12 0.00 0.00 4.04
63 64 5.869753 ATTTTGTCTCTCCAATTGACTCG 57.130 39.130 7.12 0.00 0.00 4.18
64 65 8.787852 ACTAAATTTTGTCTCTCCAATTGACTC 58.212 33.333 7.12 0.00 0.00 3.36
65 66 8.697507 ACTAAATTTTGTCTCTCCAATTGACT 57.302 30.769 7.12 0.00 0.00 3.41
66 67 9.827411 GTACTAAATTTTGTCTCTCCAATTGAC 57.173 33.333 7.12 0.00 0.00 3.18
67 68 9.010029 GGTACTAAATTTTGTCTCTCCAATTGA 57.990 33.333 7.12 0.00 0.00 2.57
68 69 8.792633 TGGTACTAAATTTTGTCTCTCCAATTG 58.207 33.333 8.57 0.00 0.00 2.32
69 70 8.793592 GTGGTACTAAATTTTGTCTCTCCAATT 58.206 33.333 8.57 0.00 0.00 2.32
70 71 7.393515 GGTGGTACTAAATTTTGTCTCTCCAAT 59.606 37.037 8.57 0.00 0.00 3.16
71 72 6.713450 GGTGGTACTAAATTTTGTCTCTCCAA 59.287 38.462 8.57 0.00 0.00 3.53
72 73 6.043938 AGGTGGTACTAAATTTTGTCTCTCCA 59.956 38.462 8.57 10.40 0.00 3.86
73 74 6.473758 AGGTGGTACTAAATTTTGTCTCTCC 58.526 40.000 8.57 11.55 0.00 3.71
74 75 6.310711 CGAGGTGGTACTAAATTTTGTCTCTC 59.689 42.308 8.57 8.75 0.00 3.20
75 76 6.014840 TCGAGGTGGTACTAAATTTTGTCTCT 60.015 38.462 8.57 1.87 0.00 3.10
76 77 6.161381 TCGAGGTGGTACTAAATTTTGTCTC 58.839 40.000 8.57 8.08 0.00 3.36
77 78 6.105397 TCGAGGTGGTACTAAATTTTGTCT 57.895 37.500 8.57 0.12 0.00 3.41
78 79 6.790285 TTCGAGGTGGTACTAAATTTTGTC 57.210 37.500 8.57 1.99 0.00 3.18
79 80 8.889717 CATATTCGAGGTGGTACTAAATTTTGT 58.110 33.333 10.11 10.11 0.00 2.83
80 81 8.889717 ACATATTCGAGGTGGTACTAAATTTTG 58.110 33.333 0.00 0.00 0.00 2.44
81 82 9.457436 AACATATTCGAGGTGGTACTAAATTTT 57.543 29.630 0.00 0.00 0.00 1.82
82 83 9.457436 AAACATATTCGAGGTGGTACTAAATTT 57.543 29.630 0.00 0.00 0.00 1.82
83 84 9.457436 AAAACATATTCGAGGTGGTACTAAATT 57.543 29.630 0.00 0.00 0.00 1.82
85 86 9.941325 TTAAAACATATTCGAGGTGGTACTAAA 57.059 29.630 0.00 0.00 0.00 1.85
86 87 9.941325 TTTAAAACATATTCGAGGTGGTACTAA 57.059 29.630 0.00 0.00 0.00 2.24
88 89 9.457436 AATTTAAAACATATTCGAGGTGGTACT 57.543 29.630 0.00 0.00 0.00 2.73
120 121 9.349145 GCTTTTCTCCATAATTTTACGCTTTTA 57.651 29.630 0.00 0.00 0.00 1.52
121 122 7.061789 CGCTTTTCTCCATAATTTTACGCTTTT 59.938 33.333 0.00 0.00 0.00 2.27
122 123 6.526674 CGCTTTTCTCCATAATTTTACGCTTT 59.473 34.615 0.00 0.00 0.00 3.51
123 124 6.027749 CGCTTTTCTCCATAATTTTACGCTT 58.972 36.000 0.00 0.00 0.00 4.68
124 125 5.123344 ACGCTTTTCTCCATAATTTTACGCT 59.877 36.000 0.00 0.00 0.00 5.07
125 126 5.329493 ACGCTTTTCTCCATAATTTTACGC 58.671 37.500 0.00 0.00 0.00 4.42
126 127 8.943925 CAATACGCTTTTCTCCATAATTTTACG 58.056 33.333 0.00 0.00 0.00 3.18
127 128 9.783256 ACAATACGCTTTTCTCCATAATTTTAC 57.217 29.630 0.00 0.00 0.00 2.01
128 129 9.781834 CACAATACGCTTTTCTCCATAATTTTA 57.218 29.630 0.00 0.00 0.00 1.52
129 130 8.519526 TCACAATACGCTTTTCTCCATAATTTT 58.480 29.630 0.00 0.00 0.00 1.82
130 131 7.968405 GTCACAATACGCTTTTCTCCATAATTT 59.032 33.333 0.00 0.00 0.00 1.82
131 132 7.472543 GTCACAATACGCTTTTCTCCATAATT 58.527 34.615 0.00 0.00 0.00 1.40
132 133 6.238103 CGTCACAATACGCTTTTCTCCATAAT 60.238 38.462 0.00 0.00 35.87 1.28
133 134 5.062934 CGTCACAATACGCTTTTCTCCATAA 59.937 40.000 0.00 0.00 35.87 1.90
134 135 4.565166 CGTCACAATACGCTTTTCTCCATA 59.435 41.667 0.00 0.00 35.87 2.74
135 136 3.370978 CGTCACAATACGCTTTTCTCCAT 59.629 43.478 0.00 0.00 35.87 3.41
136 137 2.734606 CGTCACAATACGCTTTTCTCCA 59.265 45.455 0.00 0.00 35.87 3.86
137 138 2.093783 CCGTCACAATACGCTTTTCTCC 59.906 50.000 0.00 0.00 41.51 3.71
138 139 2.735134 ACCGTCACAATACGCTTTTCTC 59.265 45.455 0.00 0.00 41.51 2.87
139 140 2.478894 CACCGTCACAATACGCTTTTCT 59.521 45.455 0.00 0.00 41.51 2.52
140 141 2.477375 TCACCGTCACAATACGCTTTTC 59.523 45.455 0.00 0.00 41.51 2.29
141 142 2.485903 TCACCGTCACAATACGCTTTT 58.514 42.857 0.00 0.00 41.51 2.27
142 143 2.157834 TCACCGTCACAATACGCTTT 57.842 45.000 0.00 0.00 41.51 3.51
143 144 1.796459 GTTCACCGTCACAATACGCTT 59.204 47.619 0.00 0.00 41.51 4.68
144 145 1.425412 GTTCACCGTCACAATACGCT 58.575 50.000 0.00 0.00 41.51 5.07
145 146 0.441145 GGTTCACCGTCACAATACGC 59.559 55.000 0.00 0.00 41.51 4.42
146 147 1.073177 GGGTTCACCGTCACAATACG 58.927 55.000 0.00 0.00 42.49 3.06
147 148 2.172851 TGGGTTCACCGTCACAATAC 57.827 50.000 0.00 0.00 44.64 1.89
148 149 2.616765 CCATGGGTTCACCGTCACAATA 60.617 50.000 2.85 0.00 44.64 1.90
149 150 1.533625 CATGGGTTCACCGTCACAAT 58.466 50.000 0.00 0.00 44.64 2.71
150 151 0.536233 CCATGGGTTCACCGTCACAA 60.536 55.000 2.85 0.00 44.64 3.33
151 152 1.072332 CCATGGGTTCACCGTCACA 59.928 57.895 2.85 0.00 44.64 3.58
152 153 0.673644 CTCCATGGGTTCACCGTCAC 60.674 60.000 13.02 0.00 44.64 3.67
153 154 1.125093 ACTCCATGGGTTCACCGTCA 61.125 55.000 13.02 0.00 44.64 4.35
154 155 0.391263 GACTCCATGGGTTCACCGTC 60.391 60.000 13.02 4.11 44.64 4.79
155 156 1.125093 TGACTCCATGGGTTCACCGT 61.125 55.000 13.02 0.00 44.64 4.83
156 157 0.036164 TTGACTCCATGGGTTCACCG 59.964 55.000 13.02 0.00 44.64 4.94
157 158 2.369394 GATTGACTCCATGGGTTCACC 58.631 52.381 13.02 5.76 40.81 4.02
158 159 2.369394 GGATTGACTCCATGGGTTCAC 58.631 52.381 13.02 4.03 44.26 3.18
159 160 1.065491 CGGATTGACTCCATGGGTTCA 60.065 52.381 13.02 11.87 45.24 3.18
160 161 1.065418 ACGGATTGACTCCATGGGTTC 60.065 52.381 13.02 9.20 45.24 3.62
161 162 0.991920 ACGGATTGACTCCATGGGTT 59.008 50.000 13.02 0.00 45.24 4.11
162 163 1.874129 TACGGATTGACTCCATGGGT 58.126 50.000 13.02 8.85 45.24 4.51
163 164 3.492102 AATACGGATTGACTCCATGGG 57.508 47.619 13.02 5.22 45.24 4.00
164 165 7.510549 AATAAAATACGGATTGACTCCATGG 57.489 36.000 4.97 4.97 45.24 3.66
188 189 9.822727 TCATCCGCATATCTATCCCTAATAATA 57.177 33.333 0.00 0.00 0.00 0.98
189 190 8.727100 TCATCCGCATATCTATCCCTAATAAT 57.273 34.615 0.00 0.00 0.00 1.28
190 191 8.547481 TTCATCCGCATATCTATCCCTAATAA 57.453 34.615 0.00 0.00 0.00 1.40
191 192 8.727100 ATTCATCCGCATATCTATCCCTAATA 57.273 34.615 0.00 0.00 0.00 0.98
192 193 7.623999 ATTCATCCGCATATCTATCCCTAAT 57.376 36.000 0.00 0.00 0.00 1.73
193 194 7.437713 AATTCATCCGCATATCTATCCCTAA 57.562 36.000 0.00 0.00 0.00 2.69
194 195 7.015292 GGTAATTCATCCGCATATCTATCCCTA 59.985 40.741 0.00 0.00 0.00 3.53
195 196 5.965033 AATTCATCCGCATATCTATCCCT 57.035 39.130 0.00 0.00 0.00 4.20
196 197 5.992217 GGTAATTCATCCGCATATCTATCCC 59.008 44.000 0.00 0.00 0.00 3.85
197 198 6.821388 AGGTAATTCATCCGCATATCTATCC 58.179 40.000 0.00 0.00 0.00 2.59
198 199 9.817809 TTTAGGTAATTCATCCGCATATCTATC 57.182 33.333 0.00 0.00 0.00 2.08
200 201 9.431887 GTTTTAGGTAATTCATCCGCATATCTA 57.568 33.333 0.00 0.00 0.00 1.98
201 202 7.936847 TGTTTTAGGTAATTCATCCGCATATCT 59.063 33.333 0.00 0.00 0.00 1.98
202 203 8.094798 TGTTTTAGGTAATTCATCCGCATATC 57.905 34.615 0.00 0.00 0.00 1.63
203 204 8.635765 ATGTTTTAGGTAATTCATCCGCATAT 57.364 30.769 0.00 0.00 0.00 1.78
204 205 7.095397 CGATGTTTTAGGTAATTCATCCGCATA 60.095 37.037 0.00 0.00 0.00 3.14
205 206 6.293407 CGATGTTTTAGGTAATTCATCCGCAT 60.293 38.462 0.00 0.00 0.00 4.73
206 207 5.007234 CGATGTTTTAGGTAATTCATCCGCA 59.993 40.000 0.00 0.00 0.00 5.69
207 208 5.440685 CGATGTTTTAGGTAATTCATCCGC 58.559 41.667 0.00 0.00 0.00 5.54
208 209 5.049680 CCCGATGTTTTAGGTAATTCATCCG 60.050 44.000 0.00 0.00 0.00 4.18
209 210 5.826208 ACCCGATGTTTTAGGTAATTCATCC 59.174 40.000 0.00 0.00 0.00 3.51
210 211 6.937436 ACCCGATGTTTTAGGTAATTCATC 57.063 37.500 0.00 0.00 0.00 2.92
211 212 7.712204 AAACCCGATGTTTTAGGTAATTCAT 57.288 32.000 0.00 0.00 44.80 2.57
237 238 8.680261 CGAACCGTTATTTTACATTTTTCGAAA 58.320 29.630 6.47 6.47 35.33 3.46
238 239 7.323177 CCGAACCGTTATTTTACATTTTTCGAA 59.677 33.333 0.00 0.00 35.33 3.71
239 240 6.796072 CCGAACCGTTATTTTACATTTTTCGA 59.204 34.615 0.00 0.00 35.33 3.71
240 241 6.032670 CCCGAACCGTTATTTTACATTTTTCG 59.967 38.462 0.00 0.00 33.62 3.46
241 242 6.862608 ACCCGAACCGTTATTTTACATTTTTC 59.137 34.615 0.00 0.00 0.00 2.29
242 243 6.641723 CACCCGAACCGTTATTTTACATTTTT 59.358 34.615 0.00 0.00 0.00 1.94
243 244 6.151004 CACCCGAACCGTTATTTTACATTTT 58.849 36.000 0.00 0.00 0.00 1.82
244 245 5.241285 ACACCCGAACCGTTATTTTACATTT 59.759 36.000 0.00 0.00 0.00 2.32
245 246 4.761227 ACACCCGAACCGTTATTTTACATT 59.239 37.500 0.00 0.00 0.00 2.71
246 247 4.154556 CACACCCGAACCGTTATTTTACAT 59.845 41.667 0.00 0.00 0.00 2.29
247 248 3.497640 CACACCCGAACCGTTATTTTACA 59.502 43.478 0.00 0.00 0.00 2.41
248 249 3.745458 TCACACCCGAACCGTTATTTTAC 59.255 43.478 0.00 0.00 0.00 2.01
249 250 3.745458 GTCACACCCGAACCGTTATTTTA 59.255 43.478 0.00 0.00 0.00 1.52
250 251 2.549329 GTCACACCCGAACCGTTATTTT 59.451 45.455 0.00 0.00 0.00 1.82
251 252 2.145536 GTCACACCCGAACCGTTATTT 58.854 47.619 0.00 0.00 0.00 1.40
252 253 1.345415 AGTCACACCCGAACCGTTATT 59.655 47.619 0.00 0.00 0.00 1.40
253 254 0.971386 AGTCACACCCGAACCGTTAT 59.029 50.000 0.00 0.00 0.00 1.89
254 255 0.752054 AAGTCACACCCGAACCGTTA 59.248 50.000 0.00 0.00 0.00 3.18
255 256 0.752054 TAAGTCACACCCGAACCGTT 59.248 50.000 0.00 0.00 0.00 4.44
256 257 0.752054 TTAAGTCACACCCGAACCGT 59.248 50.000 0.00 0.00 0.00 4.83
257 258 1.868469 TTTAAGTCACACCCGAACCG 58.132 50.000 0.00 0.00 0.00 4.44
258 259 2.745821 GGATTTAAGTCACACCCGAACC 59.254 50.000 0.03 0.00 0.00 3.62
259 260 2.414138 CGGATTTAAGTCACACCCGAAC 59.586 50.000 0.03 0.00 37.87 3.95
260 261 2.613474 CCGGATTTAAGTCACACCCGAA 60.613 50.000 0.00 0.00 37.87 4.30
261 262 1.066716 CCGGATTTAAGTCACACCCGA 60.067 52.381 0.00 0.00 37.87 5.14
262 263 1.066716 TCCGGATTTAAGTCACACCCG 60.067 52.381 0.00 0.00 35.68 5.28
263 264 2.353323 GTCCGGATTTAAGTCACACCC 58.647 52.381 7.81 0.00 0.00 4.61
264 265 1.997606 CGTCCGGATTTAAGTCACACC 59.002 52.381 7.81 0.00 0.00 4.16
265 266 1.997606 CCGTCCGGATTTAAGTCACAC 59.002 52.381 7.81 0.00 37.50 3.82
266 267 1.673626 GCCGTCCGGATTTAAGTCACA 60.674 52.381 7.81 0.00 37.50 3.58
267 268 1.004595 GCCGTCCGGATTTAAGTCAC 58.995 55.000 7.81 0.00 37.50 3.67
268 269 0.458889 CGCCGTCCGGATTTAAGTCA 60.459 55.000 7.81 0.00 37.50 3.41
269 270 2.294728 CGCCGTCCGGATTTAAGTC 58.705 57.895 7.81 0.00 37.50 3.01
270 271 4.507879 CGCCGTCCGGATTTAAGT 57.492 55.556 7.81 0.00 37.50 2.24
279 280 2.744709 AAATCAACCCGCCGTCCG 60.745 61.111 0.00 0.00 0.00 4.79
280 281 1.238625 TTGAAATCAACCCGCCGTCC 61.239 55.000 0.00 0.00 0.00 4.79
281 282 0.168128 CTTGAAATCAACCCGCCGTC 59.832 55.000 0.00 0.00 0.00 4.79
282 283 1.862602 GCTTGAAATCAACCCGCCGT 61.863 55.000 0.00 0.00 0.00 5.68
283 284 1.154035 GCTTGAAATCAACCCGCCG 60.154 57.895 0.00 0.00 0.00 6.46
284 285 0.316841 TTGCTTGAAATCAACCCGCC 59.683 50.000 4.15 0.00 0.00 6.13
285 286 2.061028 CTTTGCTTGAAATCAACCCGC 58.939 47.619 0.00 0.00 0.00 6.13
286 287 3.243367 TGTCTTTGCTTGAAATCAACCCG 60.243 43.478 0.00 0.00 0.00 5.28
287 288 4.320608 TGTCTTTGCTTGAAATCAACCC 57.679 40.909 0.00 0.00 0.00 4.11
288 289 4.687483 CCATGTCTTTGCTTGAAATCAACC 59.313 41.667 0.00 0.00 0.00 3.77
289 290 4.687483 CCCATGTCTTTGCTTGAAATCAAC 59.313 41.667 0.00 0.00 0.00 3.18
290 291 4.800249 GCCCATGTCTTTGCTTGAAATCAA 60.800 41.667 0.00 0.00 0.00 2.57
291 292 3.306225 GCCCATGTCTTTGCTTGAAATCA 60.306 43.478 0.00 0.00 0.00 2.57
292 293 3.056322 AGCCCATGTCTTTGCTTGAAATC 60.056 43.478 0.00 0.00 0.00 2.17
293 294 2.901839 AGCCCATGTCTTTGCTTGAAAT 59.098 40.909 0.00 0.00 0.00 2.17
294 295 2.318908 AGCCCATGTCTTTGCTTGAAA 58.681 42.857 0.00 0.00 0.00 2.69
295 296 1.999648 AGCCCATGTCTTTGCTTGAA 58.000 45.000 0.00 0.00 0.00 2.69
296 297 1.999648 AAGCCCATGTCTTTGCTTGA 58.000 45.000 0.00 0.00 42.13 3.02
297 298 2.803956 CAAAAGCCCATGTCTTTGCTTG 59.196 45.455 9.94 3.47 42.85 4.01
298 299 2.435437 ACAAAAGCCCATGTCTTTGCTT 59.565 40.909 9.94 4.91 45.40 3.91
299 300 2.041701 ACAAAAGCCCATGTCTTTGCT 58.958 42.857 9.94 0.00 34.34 3.91
300 301 2.137523 CACAAAAGCCCATGTCTTTGC 58.862 47.619 9.94 0.00 34.34 3.68
301 302 3.457610 ACACAAAAGCCCATGTCTTTG 57.542 42.857 9.94 7.43 34.34 2.77
302 303 5.606348 TTTACACAAAAGCCCATGTCTTT 57.394 34.783 4.83 4.83 35.47 2.52
303 304 5.606348 TTTTACACAAAAGCCCATGTCTT 57.394 34.783 0.00 0.00 0.00 3.01
304 305 5.806654 ATTTTACACAAAAGCCCATGTCT 57.193 34.783 0.00 0.00 37.08 3.41
305 306 5.571357 CGTATTTTACACAAAAGCCCATGTC 59.429 40.000 0.00 0.00 37.08 3.06
306 307 5.241949 TCGTATTTTACACAAAAGCCCATGT 59.758 36.000 0.00 0.00 37.08 3.21
307 308 5.704888 TCGTATTTTACACAAAAGCCCATG 58.295 37.500 0.00 0.00 37.08 3.66
308 309 5.968528 TCGTATTTTACACAAAAGCCCAT 57.031 34.783 0.00 0.00 37.08 4.00
309 310 5.769484 TTCGTATTTTACACAAAAGCCCA 57.231 34.783 0.00 0.00 37.08 5.36
310 311 7.646446 ATTTTCGTATTTTACACAAAAGCCC 57.354 32.000 0.00 0.00 37.08 5.19
311 312 9.998381 GTTATTTTCGTATTTTACACAAAAGCC 57.002 29.630 0.00 0.00 37.08 4.35
312 313 9.702949 CGTTATTTTCGTATTTTACACAAAAGC 57.297 29.630 0.00 0.00 37.08 3.51
317 318 9.463003 CGAATCGTTATTTTCGTATTTTACACA 57.537 29.630 0.00 0.00 39.77 3.72
344 345 5.221087 CCCGCAGTCCTGTTTTAAGTTAAAA 60.221 40.000 15.29 15.29 35.45 1.52
345 346 4.276431 CCCGCAGTCCTGTTTTAAGTTAAA 59.724 41.667 3.88 3.88 0.00 1.52
346 347 3.816523 CCCGCAGTCCTGTTTTAAGTTAA 59.183 43.478 0.00 0.00 0.00 2.01
347 348 3.181452 ACCCGCAGTCCTGTTTTAAGTTA 60.181 43.478 0.00 0.00 0.00 2.24
348 349 2.227194 CCCGCAGTCCTGTTTTAAGTT 58.773 47.619 0.00 0.00 0.00 2.66
349 350 1.142262 ACCCGCAGTCCTGTTTTAAGT 59.858 47.619 0.00 0.00 0.00 2.24
350 351 1.892209 ACCCGCAGTCCTGTTTTAAG 58.108 50.000 0.00 0.00 0.00 1.85
351 352 1.950909 CAACCCGCAGTCCTGTTTTAA 59.049 47.619 0.00 0.00 0.00 1.52
352 353 1.141254 TCAACCCGCAGTCCTGTTTTA 59.859 47.619 0.00 0.00 0.00 1.52
353 354 0.106918 TCAACCCGCAGTCCTGTTTT 60.107 50.000 0.00 0.00 0.00 2.43
354 355 0.106918 TTCAACCCGCAGTCCTGTTT 60.107 50.000 0.00 0.00 0.00 2.83
355 356 0.110486 ATTCAACCCGCAGTCCTGTT 59.890 50.000 0.00 0.00 0.00 3.16
356 357 0.110486 AATTCAACCCGCAGTCCTGT 59.890 50.000 0.00 0.00 0.00 4.00
357 358 0.804989 GAATTCAACCCGCAGTCCTG 59.195 55.000 0.00 0.00 0.00 3.86
358 359 0.693049 AGAATTCAACCCGCAGTCCT 59.307 50.000 8.44 0.00 0.00 3.85
359 360 1.087501 GAGAATTCAACCCGCAGTCC 58.912 55.000 8.44 0.00 0.00 3.85
360 361 1.734465 CAGAGAATTCAACCCGCAGTC 59.266 52.381 8.44 0.00 0.00 3.51
361 362 1.347707 TCAGAGAATTCAACCCGCAGT 59.652 47.619 8.44 0.00 0.00 4.40
362 363 2.099141 TCAGAGAATTCAACCCGCAG 57.901 50.000 8.44 0.00 0.00 5.18
363 364 2.552315 GTTTCAGAGAATTCAACCCGCA 59.448 45.455 8.44 0.00 0.00 5.69
364 365 2.552315 TGTTTCAGAGAATTCAACCCGC 59.448 45.455 8.44 0.00 0.00 6.13
365 366 4.065088 TCTGTTTCAGAGAATTCAACCCG 58.935 43.478 8.44 0.00 35.39 5.28
366 367 5.048434 CCTTCTGTTTCAGAGAATTCAACCC 60.048 44.000 8.44 0.00 41.75 4.11
367 368 5.765182 TCCTTCTGTTTCAGAGAATTCAACC 59.235 40.000 8.44 0.00 41.75 3.77
368 369 6.484977 AGTCCTTCTGTTTCAGAGAATTCAAC 59.515 38.462 8.44 3.55 41.75 3.18
369 370 6.595682 AGTCCTTCTGTTTCAGAGAATTCAA 58.404 36.000 8.44 0.00 41.75 2.69
370 371 6.179906 AGTCCTTCTGTTTCAGAGAATTCA 57.820 37.500 8.44 0.00 41.75 2.57
371 372 7.503521 AAAGTCCTTCTGTTTCAGAGAATTC 57.496 36.000 0.00 0.00 41.75 2.17
372 373 7.888250 AAAAGTCCTTCTGTTTCAGAGAATT 57.112 32.000 0.00 0.00 41.75 2.17
373 374 8.980481 TTAAAAGTCCTTCTGTTTCAGAGAAT 57.020 30.769 0.00 0.00 41.75 2.40
374 375 8.801882 TTTAAAAGTCCTTCTGTTTCAGAGAA 57.198 30.769 0.00 0.00 41.75 2.87
375 376 8.801882 TTTTAAAAGTCCTTCTGTTTCAGAGA 57.198 30.769 0.00 0.00 41.75 3.10
400 401 4.638421 TCTTTCGGCCGTCATGATATTTTT 59.362 37.500 27.15 0.00 0.00 1.94
401 402 4.196193 TCTTTCGGCCGTCATGATATTTT 58.804 39.130 27.15 0.00 0.00 1.82
402 403 3.804036 TCTTTCGGCCGTCATGATATTT 58.196 40.909 27.15 0.00 0.00 1.40
403 404 3.469008 TCTTTCGGCCGTCATGATATT 57.531 42.857 27.15 0.00 0.00 1.28
404 405 3.469008 TTCTTTCGGCCGTCATGATAT 57.531 42.857 27.15 0.00 0.00 1.63
405 406 2.971660 TTCTTTCGGCCGTCATGATA 57.028 45.000 27.15 0.00 0.00 2.15
406 407 2.107950 TTTCTTTCGGCCGTCATGAT 57.892 45.000 27.15 0.00 0.00 2.45
407 408 2.006888 GATTTCTTTCGGCCGTCATGA 58.993 47.619 27.15 17.02 0.00 3.07
408 409 2.009774 AGATTTCTTTCGGCCGTCATG 58.990 47.619 27.15 14.98 0.00 3.07
409 410 2.403252 AGATTTCTTTCGGCCGTCAT 57.597 45.000 27.15 9.01 0.00 3.06
410 411 2.178912 AAGATTTCTTTCGGCCGTCA 57.821 45.000 27.15 10.73 30.82 4.35
411 412 4.877323 AATAAGATTTCTTTCGGCCGTC 57.123 40.909 27.15 13.58 37.40 4.79
412 413 5.878669 AGTAAATAAGATTTCTTTCGGCCGT 59.121 36.000 27.15 2.66 37.40 5.68
413 414 6.359480 AGTAAATAAGATTTCTTTCGGCCG 57.641 37.500 22.12 22.12 37.40 6.13
451 452 9.197694 GCACGTCACATATCTTTATCTTTATCT 57.802 33.333 0.00 0.00 0.00 1.98
452 453 8.978539 TGCACGTCACATATCTTTATCTTTATC 58.021 33.333 0.00 0.00 0.00 1.75
453 454 8.887036 TGCACGTCACATATCTTTATCTTTAT 57.113 30.769 0.00 0.00 0.00 1.40
454 455 7.979537 ACTGCACGTCACATATCTTTATCTTTA 59.020 33.333 0.00 0.00 0.00 1.85
455 456 6.818644 ACTGCACGTCACATATCTTTATCTTT 59.181 34.615 0.00 0.00 0.00 2.52
456 457 6.256539 CACTGCACGTCACATATCTTTATCTT 59.743 38.462 0.00 0.00 0.00 2.40
457 458 5.750547 CACTGCACGTCACATATCTTTATCT 59.249 40.000 0.00 0.00 0.00 1.98
458 459 5.520288 ACACTGCACGTCACATATCTTTATC 59.480 40.000 0.00 0.00 0.00 1.75
459 460 5.291858 CACACTGCACGTCACATATCTTTAT 59.708 40.000 0.00 0.00 0.00 1.40
460 461 4.625311 CACACTGCACGTCACATATCTTTA 59.375 41.667 0.00 0.00 0.00 1.85
461 462 3.433274 CACACTGCACGTCACATATCTTT 59.567 43.478 0.00 0.00 0.00 2.52
462 463 2.995939 CACACTGCACGTCACATATCTT 59.004 45.455 0.00 0.00 0.00 2.40
463 464 2.610433 CACACTGCACGTCACATATCT 58.390 47.619 0.00 0.00 0.00 1.98
464 465 1.061131 GCACACTGCACGTCACATATC 59.939 52.381 0.00 0.00 44.26 1.63
486 487 2.719046 AACTTCGGTTTTACGTCGTACG 59.281 45.455 9.53 9.53 40.54 3.67
494 495 5.561499 GCGCTAACTTTAACTTCGGTTTTAC 59.439 40.000 0.00 0.00 39.17 2.01
502 503 3.482112 CGAGCAGCGCTAACTTTAACTTC 60.482 47.826 10.99 0.00 39.88 3.01
592 593 5.470047 TCTGGAAGTAGAACAACTCCTTC 57.530 43.478 0.00 0.00 39.71 3.46
593 594 5.888982 TTCTGGAAGTAGAACAACTCCTT 57.111 39.130 0.00 0.00 32.02 3.36
697 703 1.275291 CTCTGCTTCTTACGTTCCCCA 59.725 52.381 0.00 0.00 0.00 4.96
861 905 4.426313 GGAGCTTGGGTTCGGGGG 62.426 72.222 0.00 0.00 0.00 5.40
911 955 1.905922 GCGAGTGACAAGCTCAAGCC 61.906 60.000 0.00 0.00 43.38 4.35
996 1057 0.459899 TGATAGACGACGCCATTGCT 59.540 50.000 0.00 0.00 34.43 3.91
1056 1117 1.905512 CCGTGGCCTAACCTTAGCT 59.094 57.895 3.32 0.00 40.22 3.32
1081 1142 2.094390 CGTTAGGGTTGAACCTCGATGA 60.094 50.000 14.87 0.00 42.09 2.92
1112 1173 2.892425 CAGAGCCATCCGCGTTCC 60.892 66.667 4.92 0.00 44.76 3.62
1119 1180 0.321919 TGACAACAGCAGAGCCATCC 60.322 55.000 0.00 0.00 0.00 3.51
1244 1305 3.641159 TTGCGCTCGAGAATGCCGA 62.641 57.895 18.75 5.34 34.61 5.54
1251 1312 4.742201 GGGTGCTTGCGCTCGAGA 62.742 66.667 18.75 0.00 36.97 4.04
1303 1364 4.178214 CGGCGCGTAGTTACCGGA 62.178 66.667 9.46 0.00 41.95 5.14
1645 1706 4.760047 GTCCACCACGCCGCAGAT 62.760 66.667 0.00 0.00 0.00 2.90
2011 2072 0.689080 ATCTGCTGGTCAGGGACGAT 60.689 55.000 0.00 0.00 43.06 3.73
2067 2128 1.108727 TCTTGTCGTACACCACCGGT 61.109 55.000 0.00 0.00 35.62 5.28
2162 2223 1.015868 GAGATGGAAGCAGAAGCAGC 58.984 55.000 0.00 0.00 45.49 5.25
2292 2353 0.382515 GTATCTCCGAGAGCACGCTT 59.617 55.000 4.07 0.00 0.00 4.68
2415 2476 0.179092 GGTAGGCATACCGCGTCTTT 60.179 55.000 12.49 0.00 42.16 2.52
2722 3629 1.666553 GGTGATGAACGTGCCGTGA 60.667 57.895 0.94 0.00 39.99 4.35
2794 3701 5.041940 CGACGAGTAATTTAGAAGGAAGGG 58.958 45.833 0.00 0.00 0.00 3.95
2795 3702 4.503370 GCGACGAGTAATTTAGAAGGAAGG 59.497 45.833 0.00 0.00 0.00 3.46
2796 3703 5.100259 TGCGACGAGTAATTTAGAAGGAAG 58.900 41.667 0.00 0.00 0.00 3.46
2797 3704 5.063180 TGCGACGAGTAATTTAGAAGGAA 57.937 39.130 0.00 0.00 0.00 3.36
2798 3705 4.707030 TGCGACGAGTAATTTAGAAGGA 57.293 40.909 0.00 0.00 0.00 3.36
2799 3706 5.773239 TTTGCGACGAGTAATTTAGAAGG 57.227 39.130 0.00 0.00 0.00 3.46
2800 3707 7.955324 TCATTTTTGCGACGAGTAATTTAGAAG 59.045 33.333 0.00 0.00 0.00 2.85
2801 3708 7.798801 TCATTTTTGCGACGAGTAATTTAGAA 58.201 30.769 0.00 0.00 0.00 2.10
2802 3709 7.354025 TCATTTTTGCGACGAGTAATTTAGA 57.646 32.000 0.00 0.00 0.00 2.10
2803 3710 8.116753 AGATCATTTTTGCGACGAGTAATTTAG 58.883 33.333 0.00 0.00 0.00 1.85
2804 3711 7.970384 AGATCATTTTTGCGACGAGTAATTTA 58.030 30.769 0.00 0.00 0.00 1.40
2805 3712 6.842163 AGATCATTTTTGCGACGAGTAATTT 58.158 32.000 0.00 0.00 0.00 1.82
2806 3713 6.422776 AGATCATTTTTGCGACGAGTAATT 57.577 33.333 0.00 0.00 0.00 1.40
2807 3714 6.533723 TGTAGATCATTTTTGCGACGAGTAAT 59.466 34.615 0.00 0.00 0.00 1.89
2808 3715 5.865013 TGTAGATCATTTTTGCGACGAGTAA 59.135 36.000 0.00 0.00 0.00 2.24
2809 3716 5.404096 TGTAGATCATTTTTGCGACGAGTA 58.596 37.500 0.00 0.00 0.00 2.59
2810 3717 4.242475 TGTAGATCATTTTTGCGACGAGT 58.758 39.130 0.00 0.00 0.00 4.18
2811 3718 4.840401 TGTAGATCATTTTTGCGACGAG 57.160 40.909 0.00 0.00 0.00 4.18
2812 3719 8.757164 ATATATGTAGATCATTTTTGCGACGA 57.243 30.769 0.00 0.00 37.91 4.20
2813 3720 8.864024 AGATATATGTAGATCATTTTTGCGACG 58.136 33.333 0.00 0.00 37.91 5.12
2840 3747 8.760569 CCGTTCTAAATTACTTGTTGCAAAAAT 58.239 29.630 1.65 0.00 0.00 1.82
2841 3748 7.974501 TCCGTTCTAAATTACTTGTTGCAAAAA 59.025 29.630 0.00 0.00 0.00 1.94
2842 3749 7.481642 TCCGTTCTAAATTACTTGTTGCAAAA 58.518 30.769 0.00 0.00 0.00 2.44
2843 3750 7.028926 TCCGTTCTAAATTACTTGTTGCAAA 57.971 32.000 0.00 0.00 0.00 3.68
2844 3751 6.293735 CCTCCGTTCTAAATTACTTGTTGCAA 60.294 38.462 0.00 0.00 0.00 4.08
2845 3752 5.180492 CCTCCGTTCTAAATTACTTGTTGCA 59.820 40.000 0.00 0.00 0.00 4.08
2846 3753 5.391629 CCCTCCGTTCTAAATTACTTGTTGC 60.392 44.000 0.00 0.00 0.00 4.17
2847 3754 5.935789 TCCCTCCGTTCTAAATTACTTGTTG 59.064 40.000 0.00 0.00 0.00 3.33
2848 3755 6.117975 TCCCTCCGTTCTAAATTACTTGTT 57.882 37.500 0.00 0.00 0.00 2.83
2849 3756 5.247792 ACTCCCTCCGTTCTAAATTACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
2850 3757 5.731591 ACTCCCTCCGTTCTAAATTACTTG 58.268 41.667 0.00 0.00 0.00 3.16
2851 3758 6.666980 AGTACTCCCTCCGTTCTAAATTACTT 59.333 38.462 0.00 0.00 0.00 2.24
2852 3759 6.193504 AGTACTCCCTCCGTTCTAAATTACT 58.806 40.000 0.00 0.00 0.00 2.24
2853 3760 6.462552 AGTACTCCCTCCGTTCTAAATTAC 57.537 41.667 0.00 0.00 0.00 1.89
2854 3761 6.264067 GCTAGTACTCCCTCCGTTCTAAATTA 59.736 42.308 0.00 0.00 0.00 1.40
2855 3762 5.068855 GCTAGTACTCCCTCCGTTCTAAATT 59.931 44.000 0.00 0.00 0.00 1.82
2856 3763 4.583907 GCTAGTACTCCCTCCGTTCTAAAT 59.416 45.833 0.00 0.00 0.00 1.40
2857 3764 3.950395 GCTAGTACTCCCTCCGTTCTAAA 59.050 47.826 0.00 0.00 0.00 1.85
2858 3765 3.201708 AGCTAGTACTCCCTCCGTTCTAA 59.798 47.826 0.00 0.00 0.00 2.10
2859 3766 2.776536 AGCTAGTACTCCCTCCGTTCTA 59.223 50.000 0.00 0.00 0.00 2.10
2860 3767 1.565288 AGCTAGTACTCCCTCCGTTCT 59.435 52.381 0.00 0.00 0.00 3.01
2861 3768 2.055684 AGCTAGTACTCCCTCCGTTC 57.944 55.000 0.00 0.00 0.00 3.95
2862 3769 2.509131 AGTAGCTAGTACTCCCTCCGTT 59.491 50.000 0.00 0.00 37.41 4.44
2863 3770 2.126057 AGTAGCTAGTACTCCCTCCGT 58.874 52.381 0.00 0.00 37.41 4.69
2864 3771 2.934886 AGTAGCTAGTACTCCCTCCG 57.065 55.000 0.00 0.00 37.41 4.63
2865 3772 3.678289 GCTAGTAGCTAGTACTCCCTCC 58.322 54.545 15.16 0.00 41.42 4.30
2889 3796 6.708285 ACCTAATTCGTTTCCTATGTCACTT 58.292 36.000 0.00 0.00 0.00 3.16
2969 3898 5.097742 TGGACGTATGGAGTTCAAATGAT 57.902 39.130 0.00 0.00 0.00 2.45
2973 3902 5.984725 ACATATGGACGTATGGAGTTCAAA 58.015 37.500 7.80 0.00 36.58 2.69
2981 3910 7.962964 AAAGTCAATACATATGGACGTATGG 57.037 36.000 7.80 0.00 40.73 2.74
3054 3986 9.977762 CGGTCCTTATGTAATTTGTAGTTTTAC 57.022 33.333 0.00 0.00 0.00 2.01
3056 3988 7.362315 GGCGGTCCTTATGTAATTTGTAGTTTT 60.362 37.037 0.00 0.00 0.00 2.43
3060 3992 5.120399 TGGCGGTCCTTATGTAATTTGTAG 58.880 41.667 0.00 0.00 0.00 2.74
3063 3995 4.578516 TCATGGCGGTCCTTATGTAATTTG 59.421 41.667 0.00 0.00 0.00 2.32
3066 3998 3.135712 TGTCATGGCGGTCCTTATGTAAT 59.864 43.478 0.00 0.00 0.00 1.89
3070 4002 2.036958 TTGTCATGGCGGTCCTTATG 57.963 50.000 0.00 0.00 0.00 1.90
3071 4003 2.752903 GTTTTGTCATGGCGGTCCTTAT 59.247 45.455 0.00 0.00 0.00 1.73
3078 4010 2.420022 CCTTCTAGTTTTGTCATGGCGG 59.580 50.000 0.00 0.00 0.00 6.13
3079 4011 3.334691 TCCTTCTAGTTTTGTCATGGCG 58.665 45.455 0.00 0.00 0.00 5.69
3081 4013 5.939883 TGACATCCTTCTAGTTTTGTCATGG 59.060 40.000 10.46 0.00 38.71 3.66
3087 4019 7.301068 GTCATCTGACATCCTTCTAGTTTTG 57.699 40.000 5.46 0.00 44.18 2.44
3103 4035 3.324556 TGATGAGTGTTGGTGTCATCTGA 59.675 43.478 11.67 0.00 44.65 3.27
3106 4038 2.744202 GGTGATGAGTGTTGGTGTCATC 59.256 50.000 4.88 4.88 44.62 2.92
3108 4040 1.768275 AGGTGATGAGTGTTGGTGTCA 59.232 47.619 0.00 0.00 0.00 3.58
3109 4041 2.146342 CAGGTGATGAGTGTTGGTGTC 58.854 52.381 0.00 0.00 0.00 3.67
3111 4043 2.146342 GACAGGTGATGAGTGTTGGTG 58.854 52.381 0.00 0.00 0.00 4.17
3112 4044 2.037772 GAGACAGGTGATGAGTGTTGGT 59.962 50.000 0.00 0.00 0.00 3.67
3113 4045 2.301296 AGAGACAGGTGATGAGTGTTGG 59.699 50.000 0.00 0.00 0.00 3.77
3115 4047 3.194542 GCTAGAGACAGGTGATGAGTGTT 59.805 47.826 0.00 0.00 0.00 3.32
3116 4048 2.757868 GCTAGAGACAGGTGATGAGTGT 59.242 50.000 0.00 0.00 0.00 3.55
3117 4049 2.757314 TGCTAGAGACAGGTGATGAGTG 59.243 50.000 0.00 0.00 0.00 3.51
3118 4050 2.757868 GTGCTAGAGACAGGTGATGAGT 59.242 50.000 0.00 0.00 0.00 3.41
3121 4053 2.100584 GAGGTGCTAGAGACAGGTGATG 59.899 54.545 0.00 0.00 0.00 3.07
3122 4054 2.383855 GAGGTGCTAGAGACAGGTGAT 58.616 52.381 0.00 0.00 0.00 3.06
3123 4055 1.617263 GGAGGTGCTAGAGACAGGTGA 60.617 57.143 0.00 0.00 0.00 4.02
3127 4059 1.748493 GTGAGGAGGTGCTAGAGACAG 59.252 57.143 0.00 0.00 0.00 3.51
3128 4060 1.617263 GGTGAGGAGGTGCTAGAGACA 60.617 57.143 0.00 0.00 0.00 3.41
3129 4061 1.107945 GGTGAGGAGGTGCTAGAGAC 58.892 60.000 0.00 0.00 0.00 3.36
3130 4062 0.033011 GGGTGAGGAGGTGCTAGAGA 60.033 60.000 0.00 0.00 0.00 3.10
3131 4063 0.324738 TGGGTGAGGAGGTGCTAGAG 60.325 60.000 0.00 0.00 0.00 2.43
3132 4064 0.116342 TTGGGTGAGGAGGTGCTAGA 59.884 55.000 0.00 0.00 0.00 2.43
3135 4067 1.062488 AGTTTGGGTGAGGAGGTGCT 61.062 55.000 0.00 0.00 0.00 4.40
3136 4068 0.606673 GAGTTTGGGTGAGGAGGTGC 60.607 60.000 0.00 0.00 0.00 5.01
3213 4192 3.153919 GTTCAATGGTAAGGGCTTCACA 58.846 45.455 0.00 0.00 0.00 3.58
3228 4207 1.406887 CCCCGGTCTGATTCGTTCAAT 60.407 52.381 0.00 0.00 32.78 2.57
3257 4236 1.338655 TGGAGTTCGATGACGTGTTCA 59.661 47.619 0.00 0.00 40.69 3.18
3259 4238 1.611977 TCTGGAGTTCGATGACGTGTT 59.388 47.619 0.00 0.00 40.69 3.32
3265 4244 3.129462 GTGTCAGATCTGGAGTTCGATGA 59.871 47.826 22.42 0.00 0.00 2.92
3284 4263 0.470456 TCTTAGTCGTGGTGGGGTGT 60.470 55.000 0.00 0.00 0.00 4.16
3307 4286 4.223700 TGACAGGTATGATTCACTGCTTCT 59.776 41.667 3.39 0.00 34.40 2.85
3312 4291 5.027293 TGGATGACAGGTATGATTCACTG 57.973 43.478 2.20 2.20 37.01 3.66
3315 4294 5.892524 TCATGGATGACAGGTATGATTCA 57.107 39.130 0.00 0.00 31.56 2.57
3316 4295 5.471456 GGTTCATGGATGACAGGTATGATTC 59.529 44.000 0.00 0.00 36.36 2.52
3351 4330 6.864685 ACGACATTTAGAAGATGAAACGTGTA 59.135 34.615 0.00 0.00 34.41 2.90
3361 4340 6.036517 GTCTGCATCAACGACATTTAGAAGAT 59.963 38.462 0.00 0.00 0.00 2.40
3407 4386 2.351706 CGGAGCTTAGGAGGTAGTCT 57.648 55.000 0.00 0.00 32.79 3.24
3429 4408 2.892334 GCGTTTGCTCCAGCGTTGA 61.892 57.895 0.00 0.00 45.83 3.18
3472 4451 3.443044 TCCTCGTGGTGGACTTGTA 57.557 52.632 2.99 0.00 34.23 2.41
3492 4471 4.856801 GATGATGGCGGTGGCGGT 62.857 66.667 0.00 0.00 41.24 5.68
3524 4503 5.488203 TGTTGGGGATGAATTTGGAAATCAT 59.512 36.000 0.00 0.00 0.00 2.45
3548 4527 1.335132 ACCAGGCCATCGGTCGTATT 61.335 55.000 5.01 0.00 29.39 1.89
3574 4553 5.396654 GCTGAATAAAGATTTTTCGGATCGC 59.603 40.000 6.37 0.00 0.00 4.58
3575 4554 5.617187 CGCTGAATAAAGATTTTTCGGATCG 59.383 40.000 6.37 0.00 0.00 3.69
3584 4563 3.306166 CCGACGACGCTGAATAAAGATTT 59.694 43.478 0.64 0.00 38.29 2.17
3600 4579 4.209911 CGAAGTCATGTATACTACCGACGA 59.790 45.833 4.17 0.00 36.07 4.20
3605 4584 8.965172 CAAACATACGAAGTCATGTATACTACC 58.035 37.037 4.17 0.00 43.93 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.