Multiple sequence alignment - TraesCS2A01G250100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G250100 chr2A 100.000 2309 0 0 1 2309 377108373 377110681 0.000000e+00 4265
1 TraesCS2A01G250100 chr2A 95.128 1252 49 10 303 1548 755357668 755356423 0.000000e+00 1964
2 TraesCS2A01G250100 chr2D 97.592 1246 28 2 303 1547 355482541 355483785 0.000000e+00 2134
3 TraesCS2A01G250100 chr5A 96.148 1246 45 3 303 1547 315535778 315537021 0.000000e+00 2032
4 TraesCS2A01G250100 chr5A 86.722 241 27 4 2028 2266 659774529 659774766 1.760000e-66 263
5 TraesCS2A01G250100 chr5A 85.892 241 29 4 2028 2266 323086784 323087021 3.810000e-63 252
6 TraesCS2A01G250100 chr5A 95.181 83 3 1 1946 2027 659774355 659774437 1.860000e-26 130
7 TraesCS2A01G250100 chr3B 95.677 1249 47 7 303 1548 782022840 782024084 0.000000e+00 2001
8 TraesCS2A01G250100 chr3B 98.344 302 5 0 1 302 708505013 708504712 4.370000e-147 531
9 TraesCS2A01G250100 chr3B 94.643 112 6 0 1 112 5133557 5133668 8.480000e-40 174
10 TraesCS2A01G250100 chr7D 88.090 1251 135 10 303 1548 23563384 23564625 0.000000e+00 1472
11 TraesCS2A01G250100 chr7D 88.080 1250 135 10 303 1547 400291374 400290134 0.000000e+00 1471
12 TraesCS2A01G250100 chr7D 88.010 1251 136 10 303 1548 135769395 135770636 0.000000e+00 1467
13 TraesCS2A01G250100 chr3D 88.010 1251 136 10 303 1548 564344510 564345751 0.000000e+00 1467
14 TraesCS2A01G250100 chr3D 85.197 304 31 5 1 302 54762580 54762289 1.340000e-77 300
15 TraesCS2A01G250100 chr6D 89.661 1151 107 9 303 1450 392049637 392048496 0.000000e+00 1456
16 TraesCS2A01G250100 chr7B 86.269 772 92 10 1548 2309 278003246 278002479 0.000000e+00 826
17 TraesCS2A01G250100 chr5D 92.291 467 24 7 1083 1547 450667817 450667361 0.000000e+00 652
18 TraesCS2A01G250100 chr4D 91.863 467 25 8 1083 1547 483639168 483638713 6.960000e-180 640
19 TraesCS2A01G250100 chr7A 99.338 302 2 0 1 302 158650780 158651081 4.340000e-152 547
20 TraesCS2A01G250100 chr7A 95.181 83 3 1 1946 2027 541572993 541572911 1.860000e-26 130
21 TraesCS2A01G250100 chr4A 98.344 302 5 0 1 302 610254170 610253869 4.370000e-147 531
22 TraesCS2A01G250100 chr2B 86.723 354 36 9 1946 2294 12434788 12435135 1.290000e-102 383
23 TraesCS2A01G250100 chr2B 80.769 182 33 2 124 303 106859799 106859980 8.600000e-30 141
24 TraesCS2A01G250100 chr5B 85.448 268 36 2 2028 2293 258239548 258239814 2.260000e-70 276
25 TraesCS2A01G250100 chr5B 86.667 195 23 2 1836 2027 258239305 258239499 1.800000e-51 213
26 TraesCS2A01G250100 chr1A 87.295 244 26 4 2028 2269 2011710 2011470 8.130000e-70 274
27 TraesCS2A01G250100 chr1A 94.186 86 4 1 1946 2030 2011884 2011799 1.860000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G250100 chr2A 377108373 377110681 2308 False 4265.0 4265 100.0000 1 2309 1 chr2A.!!$F1 2308
1 TraesCS2A01G250100 chr2A 755356423 755357668 1245 True 1964.0 1964 95.1280 303 1548 1 chr2A.!!$R1 1245
2 TraesCS2A01G250100 chr2D 355482541 355483785 1244 False 2134.0 2134 97.5920 303 1547 1 chr2D.!!$F1 1244
3 TraesCS2A01G250100 chr5A 315535778 315537021 1243 False 2032.0 2032 96.1480 303 1547 1 chr5A.!!$F1 1244
4 TraesCS2A01G250100 chr3B 782022840 782024084 1244 False 2001.0 2001 95.6770 303 1548 1 chr3B.!!$F2 1245
5 TraesCS2A01G250100 chr7D 23563384 23564625 1241 False 1472.0 1472 88.0900 303 1548 1 chr7D.!!$F1 1245
6 TraesCS2A01G250100 chr7D 400290134 400291374 1240 True 1471.0 1471 88.0800 303 1547 1 chr7D.!!$R1 1244
7 TraesCS2A01G250100 chr7D 135769395 135770636 1241 False 1467.0 1467 88.0100 303 1548 1 chr7D.!!$F2 1245
8 TraesCS2A01G250100 chr3D 564344510 564345751 1241 False 1467.0 1467 88.0100 303 1548 1 chr3D.!!$F1 1245
9 TraesCS2A01G250100 chr6D 392048496 392049637 1141 True 1456.0 1456 89.6610 303 1450 1 chr6D.!!$R1 1147
10 TraesCS2A01G250100 chr7B 278002479 278003246 767 True 826.0 826 86.2690 1548 2309 1 chr7B.!!$R1 761
11 TraesCS2A01G250100 chr5B 258239305 258239814 509 False 244.5 276 86.0575 1836 2293 2 chr5B.!!$F1 457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.033504 GGTTCAACTCGCCTCTGTGA 59.966 55.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1985 2002 0.313672 GAGATGAGCTAGGAGCACGG 59.686 60.0 0.64 0.0 45.56 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.896443 CCGCCTGTCTCTTCTCCC 59.104 66.667 0.00 0.00 0.00 4.30
18 19 1.984570 CCGCCTGTCTCTTCTCCCA 60.985 63.158 0.00 0.00 0.00 4.37
19 20 1.333636 CCGCCTGTCTCTTCTCCCAT 61.334 60.000 0.00 0.00 0.00 4.00
20 21 0.103937 CGCCTGTCTCTTCTCCCATC 59.896 60.000 0.00 0.00 0.00 3.51
21 22 0.103937 GCCTGTCTCTTCTCCCATCG 59.896 60.000 0.00 0.00 0.00 3.84
22 23 0.749649 CCTGTCTCTTCTCCCATCGG 59.250 60.000 0.00 0.00 0.00 4.18
23 24 0.103937 CTGTCTCTTCTCCCATCGGC 59.896 60.000 0.00 0.00 0.00 5.54
24 25 0.614697 TGTCTCTTCTCCCATCGGCA 60.615 55.000 0.00 0.00 0.00 5.69
25 26 0.537188 GTCTCTTCTCCCATCGGCAA 59.463 55.000 0.00 0.00 0.00 4.52
26 27 1.066143 GTCTCTTCTCCCATCGGCAAA 60.066 52.381 0.00 0.00 0.00 3.68
27 28 1.208052 TCTCTTCTCCCATCGGCAAAG 59.792 52.381 0.00 0.00 0.00 2.77
28 29 1.208052 CTCTTCTCCCATCGGCAAAGA 59.792 52.381 0.00 0.00 32.02 2.52
29 30 1.628340 TCTTCTCCCATCGGCAAAGAA 59.372 47.619 0.00 0.00 30.72 2.52
30 31 1.740025 CTTCTCCCATCGGCAAAGAAC 59.260 52.381 0.00 0.00 0.00 3.01
31 32 0.690192 TCTCCCATCGGCAAAGAACA 59.310 50.000 0.00 0.00 0.00 3.18
32 33 0.804989 CTCCCATCGGCAAAGAACAC 59.195 55.000 0.00 0.00 0.00 3.32
33 34 0.953471 TCCCATCGGCAAAGAACACG 60.953 55.000 0.00 0.00 0.00 4.49
34 35 0.953471 CCCATCGGCAAAGAACACGA 60.953 55.000 0.00 0.00 39.85 4.35
35 36 0.871722 CCATCGGCAAAGAACACGAA 59.128 50.000 0.00 0.00 38.94 3.85
36 37 1.399727 CCATCGGCAAAGAACACGAAC 60.400 52.381 0.00 0.00 38.94 3.95
37 38 1.262950 CATCGGCAAAGAACACGAACA 59.737 47.619 0.00 0.00 38.94 3.18
38 39 0.934496 TCGGCAAAGAACACGAACAG 59.066 50.000 0.00 0.00 31.79 3.16
39 40 0.934496 CGGCAAAGAACACGAACAGA 59.066 50.000 0.00 0.00 0.00 3.41
40 41 1.332904 CGGCAAAGAACACGAACAGAC 60.333 52.381 0.00 0.00 0.00 3.51
41 42 1.668751 GGCAAAGAACACGAACAGACA 59.331 47.619 0.00 0.00 0.00 3.41
42 43 2.286418 GGCAAAGAACACGAACAGACAG 60.286 50.000 0.00 0.00 0.00 3.51
43 44 2.607635 GCAAAGAACACGAACAGACAGA 59.392 45.455 0.00 0.00 0.00 3.41
44 45 3.302740 GCAAAGAACACGAACAGACAGAG 60.303 47.826 0.00 0.00 0.00 3.35
45 46 4.112634 CAAAGAACACGAACAGACAGAGA 58.887 43.478 0.00 0.00 0.00 3.10
46 47 4.386867 AAGAACACGAACAGACAGAGAA 57.613 40.909 0.00 0.00 0.00 2.87
47 48 3.707793 AGAACACGAACAGACAGAGAAC 58.292 45.455 0.00 0.00 0.00 3.01
48 49 3.130516 AGAACACGAACAGACAGAGAACA 59.869 43.478 0.00 0.00 0.00 3.18
49 50 3.520290 ACACGAACAGACAGAGAACAA 57.480 42.857 0.00 0.00 0.00 2.83
50 51 3.857052 ACACGAACAGACAGAGAACAAA 58.143 40.909 0.00 0.00 0.00 2.83
51 52 3.865745 ACACGAACAGACAGAGAACAAAG 59.134 43.478 0.00 0.00 0.00 2.77
52 53 3.246226 CACGAACAGACAGAGAACAAAGG 59.754 47.826 0.00 0.00 0.00 3.11
53 54 3.132289 ACGAACAGACAGAGAACAAAGGA 59.868 43.478 0.00 0.00 0.00 3.36
54 55 3.738282 CGAACAGACAGAGAACAAAGGAG 59.262 47.826 0.00 0.00 0.00 3.69
55 56 4.499865 CGAACAGACAGAGAACAAAGGAGA 60.500 45.833 0.00 0.00 0.00 3.71
56 57 4.599047 ACAGACAGAGAACAAAGGAGAG 57.401 45.455 0.00 0.00 0.00 3.20
57 58 3.323403 ACAGACAGAGAACAAAGGAGAGG 59.677 47.826 0.00 0.00 0.00 3.69
58 59 2.903135 AGACAGAGAACAAAGGAGAGGG 59.097 50.000 0.00 0.00 0.00 4.30
59 60 1.981495 ACAGAGAACAAAGGAGAGGGG 59.019 52.381 0.00 0.00 0.00 4.79
60 61 1.280421 CAGAGAACAAAGGAGAGGGGG 59.720 57.143 0.00 0.00 0.00 5.40
61 62 0.034960 GAGAACAAAGGAGAGGGGGC 60.035 60.000 0.00 0.00 0.00 5.80
62 63 0.476611 AGAACAAAGGAGAGGGGGCT 60.477 55.000 0.00 0.00 0.00 5.19
63 64 1.203440 AGAACAAAGGAGAGGGGGCTA 60.203 52.381 0.00 0.00 0.00 3.93
64 65 1.847088 GAACAAAGGAGAGGGGGCTAT 59.153 52.381 0.00 0.00 0.00 2.97
65 66 1.216990 ACAAAGGAGAGGGGGCTATG 58.783 55.000 0.00 0.00 0.00 2.23
66 67 0.179006 CAAAGGAGAGGGGGCTATGC 60.179 60.000 0.00 0.00 0.00 3.14
67 68 0.624500 AAAGGAGAGGGGGCTATGCA 60.625 55.000 0.00 0.00 0.00 3.96
68 69 0.624500 AAGGAGAGGGGGCTATGCAA 60.625 55.000 0.00 0.00 0.00 4.08
69 70 1.149401 GGAGAGGGGGCTATGCAAC 59.851 63.158 0.00 0.00 0.00 4.17
70 71 1.635817 GGAGAGGGGGCTATGCAACA 61.636 60.000 0.00 0.00 0.00 3.33
71 72 0.475906 GAGAGGGGGCTATGCAACAT 59.524 55.000 0.00 0.00 0.00 2.71
72 73 0.929244 AGAGGGGGCTATGCAACATT 59.071 50.000 0.00 0.00 0.00 2.71
73 74 2.106511 GAGAGGGGGCTATGCAACATTA 59.893 50.000 0.00 0.00 0.00 1.90
74 75 2.107204 AGAGGGGGCTATGCAACATTAG 59.893 50.000 0.00 0.00 0.00 1.73
75 76 0.961753 GGGGGCTATGCAACATTAGC 59.038 55.000 8.28 8.28 40.07 3.09
76 77 1.479389 GGGGGCTATGCAACATTAGCT 60.479 52.381 14.87 0.00 40.52 3.32
77 78 1.610522 GGGGCTATGCAACATTAGCTG 59.389 52.381 14.87 0.00 40.52 4.24
78 79 2.575532 GGGCTATGCAACATTAGCTGA 58.424 47.619 14.87 0.00 40.52 4.26
79 80 2.551459 GGGCTATGCAACATTAGCTGAG 59.449 50.000 14.87 0.00 40.52 3.35
80 81 2.551459 GGCTATGCAACATTAGCTGAGG 59.449 50.000 14.87 0.00 40.52 3.86
81 82 3.470709 GCTATGCAACATTAGCTGAGGA 58.529 45.455 9.34 0.00 38.22 3.71
82 83 4.070716 GCTATGCAACATTAGCTGAGGAT 58.929 43.478 9.34 0.00 38.22 3.24
83 84 4.153835 GCTATGCAACATTAGCTGAGGATC 59.846 45.833 9.34 0.00 38.22 3.36
84 85 2.923121 TGCAACATTAGCTGAGGATCC 58.077 47.619 2.48 2.48 0.00 3.36
85 86 2.239402 TGCAACATTAGCTGAGGATCCA 59.761 45.455 15.82 0.00 0.00 3.41
86 87 2.877168 GCAACATTAGCTGAGGATCCAG 59.123 50.000 15.82 4.43 37.23 3.86
87 88 3.432749 GCAACATTAGCTGAGGATCCAGA 60.433 47.826 15.82 0.00 36.29 3.86
88 89 4.378774 CAACATTAGCTGAGGATCCAGAG 58.621 47.826 15.82 10.07 36.29 3.35
89 90 2.971330 ACATTAGCTGAGGATCCAGAGG 59.029 50.000 15.82 2.09 36.29 3.69
90 91 2.856760 TTAGCTGAGGATCCAGAGGT 57.143 50.000 15.82 16.17 36.29 3.85
91 92 2.373335 TAGCTGAGGATCCAGAGGTC 57.627 55.000 15.82 2.43 36.29 3.85
92 93 0.636101 AGCTGAGGATCCAGAGGTCT 59.364 55.000 15.82 0.00 36.29 3.85
93 94 1.008206 AGCTGAGGATCCAGAGGTCTT 59.992 52.381 15.82 0.00 36.29 3.01
94 95 1.836802 GCTGAGGATCCAGAGGTCTTT 59.163 52.381 15.82 0.00 36.29 2.52
95 96 2.419851 GCTGAGGATCCAGAGGTCTTTG 60.420 54.545 15.82 0.00 36.29 2.77
96 97 2.836981 CTGAGGATCCAGAGGTCTTTGT 59.163 50.000 15.82 0.00 36.29 2.83
97 98 2.568956 TGAGGATCCAGAGGTCTTTGTG 59.431 50.000 15.82 0.00 0.00 3.33
98 99 1.280421 AGGATCCAGAGGTCTTTGTGC 59.720 52.381 15.82 0.00 0.00 4.57
99 100 1.003580 GGATCCAGAGGTCTTTGTGCA 59.996 52.381 6.95 0.00 0.00 4.57
100 101 2.553028 GGATCCAGAGGTCTTTGTGCAA 60.553 50.000 6.95 0.00 0.00 4.08
101 102 2.260844 TCCAGAGGTCTTTGTGCAAG 57.739 50.000 0.00 0.00 0.00 4.01
102 103 1.768275 TCCAGAGGTCTTTGTGCAAGA 59.232 47.619 0.00 0.00 39.39 3.02
103 104 2.172505 TCCAGAGGTCTTTGTGCAAGAA 59.827 45.455 0.00 0.00 43.52 2.52
104 105 2.951642 CCAGAGGTCTTTGTGCAAGAAA 59.048 45.455 0.00 0.00 43.52 2.52
105 106 3.381272 CCAGAGGTCTTTGTGCAAGAAAA 59.619 43.478 0.00 0.00 43.52 2.29
106 107 4.038402 CCAGAGGTCTTTGTGCAAGAAAAT 59.962 41.667 0.00 0.00 43.52 1.82
107 108 4.980434 CAGAGGTCTTTGTGCAAGAAAATG 59.020 41.667 0.00 0.00 43.52 2.32
108 109 4.889409 AGAGGTCTTTGTGCAAGAAAATGA 59.111 37.500 0.00 0.00 43.52 2.57
109 110 5.537674 AGAGGTCTTTGTGCAAGAAAATGAT 59.462 36.000 0.00 0.00 43.52 2.45
110 111 5.535333 AGGTCTTTGTGCAAGAAAATGATG 58.465 37.500 0.00 0.00 43.52 3.07
111 112 4.151157 GGTCTTTGTGCAAGAAAATGATGC 59.849 41.667 0.00 0.00 43.52 3.91
112 113 4.746115 GTCTTTGTGCAAGAAAATGATGCA 59.254 37.500 0.00 0.00 43.52 3.96
115 116 2.373540 TGCAAGAAAATGATGCAGCC 57.626 45.000 0.00 0.00 44.52 4.85
116 117 1.066716 TGCAAGAAAATGATGCAGCCC 60.067 47.619 0.00 0.00 44.52 5.19
117 118 1.066716 GCAAGAAAATGATGCAGCCCA 60.067 47.619 0.00 0.00 39.81 5.36
118 119 2.888594 CAAGAAAATGATGCAGCCCAG 58.111 47.619 0.00 0.00 0.00 4.45
119 120 2.494471 CAAGAAAATGATGCAGCCCAGA 59.506 45.455 0.00 0.00 0.00 3.86
120 121 2.376109 AGAAAATGATGCAGCCCAGAG 58.624 47.619 0.00 0.00 0.00 3.35
121 122 1.407979 GAAAATGATGCAGCCCAGAGG 59.592 52.381 0.00 0.00 0.00 3.69
156 157 2.600388 CGTGACCGCAAAACAGAGA 58.400 52.632 0.00 0.00 0.00 3.10
157 158 0.934496 CGTGACCGCAAAACAGAGAA 59.066 50.000 0.00 0.00 0.00 2.87
158 159 1.332904 CGTGACCGCAAAACAGAGAAC 60.333 52.381 0.00 0.00 0.00 3.01
159 160 1.002792 GTGACCGCAAAACAGAGAACC 60.003 52.381 0.00 0.00 0.00 3.62
160 161 0.234884 GACCGCAAAACAGAGAACCG 59.765 55.000 0.00 0.00 0.00 4.44
161 162 1.164041 ACCGCAAAACAGAGAACCGG 61.164 55.000 0.00 0.00 40.01 5.28
162 163 1.574428 CGCAAAACAGAGAACCGGG 59.426 57.895 6.32 0.00 0.00 5.73
163 164 1.285950 GCAAAACAGAGAACCGGGC 59.714 57.895 6.32 0.00 0.00 6.13
164 165 1.574428 CAAAACAGAGAACCGGGCG 59.426 57.895 6.32 0.00 0.00 6.13
165 166 1.147600 AAAACAGAGAACCGGGCGT 59.852 52.632 6.32 0.00 0.00 5.68
166 167 0.883370 AAAACAGAGAACCGGGCGTC 60.883 55.000 6.32 0.00 0.00 5.19
167 168 2.726822 AAACAGAGAACCGGGCGTCC 62.727 60.000 6.32 0.00 0.00 4.79
178 179 4.668118 GGCGTCCGACCGGTTCAA 62.668 66.667 9.42 0.00 36.47 2.69
179 180 3.408851 GCGTCCGACCGGTTCAAC 61.409 66.667 9.42 6.32 36.47 3.18
180 181 2.337532 CGTCCGACCGGTTCAACT 59.662 61.111 9.42 0.00 36.47 3.16
181 182 1.731969 CGTCCGACCGGTTCAACTC 60.732 63.158 9.42 0.00 36.47 3.01
182 183 1.731969 GTCCGACCGGTTCAACTCG 60.732 63.158 9.42 6.30 36.47 4.18
183 184 3.110178 CCGACCGGTTCAACTCGC 61.110 66.667 9.42 0.00 0.00 5.03
184 185 3.110178 CGACCGGTTCAACTCGCC 61.110 66.667 9.42 0.00 0.00 5.54
185 186 2.342648 GACCGGTTCAACTCGCCT 59.657 61.111 9.42 0.00 0.00 5.52
186 187 1.737008 GACCGGTTCAACTCGCCTC 60.737 63.158 9.42 0.00 0.00 4.70
187 188 2.156051 GACCGGTTCAACTCGCCTCT 62.156 60.000 9.42 0.00 0.00 3.69
188 189 1.738099 CCGGTTCAACTCGCCTCTG 60.738 63.158 0.00 0.00 0.00 3.35
189 190 1.006102 CGGTTCAACTCGCCTCTGT 60.006 57.895 0.00 0.00 0.00 3.41
190 191 1.284982 CGGTTCAACTCGCCTCTGTG 61.285 60.000 0.00 0.00 0.00 3.66
191 192 0.033504 GGTTCAACTCGCCTCTGTGA 59.966 55.000 0.00 0.00 0.00 3.58
192 193 1.140816 GTTCAACTCGCCTCTGTGAC 58.859 55.000 0.00 0.00 0.00 3.67
193 194 1.040646 TTCAACTCGCCTCTGTGACT 58.959 50.000 0.00 0.00 0.00 3.41
194 195 1.040646 TCAACTCGCCTCTGTGACTT 58.959 50.000 0.00 0.00 0.00 3.01
195 196 1.143305 CAACTCGCCTCTGTGACTTG 58.857 55.000 0.00 0.00 0.00 3.16
196 197 1.040646 AACTCGCCTCTGTGACTTGA 58.959 50.000 0.00 0.00 0.00 3.02
197 198 1.040646 ACTCGCCTCTGTGACTTGAA 58.959 50.000 0.00 0.00 0.00 2.69
198 199 1.620819 ACTCGCCTCTGTGACTTGAAT 59.379 47.619 0.00 0.00 0.00 2.57
199 200 1.998315 CTCGCCTCTGTGACTTGAATG 59.002 52.381 0.00 0.00 0.00 2.67
200 201 0.445436 CGCCTCTGTGACTTGAATGC 59.555 55.000 0.00 0.00 0.00 3.56
201 202 1.527034 GCCTCTGTGACTTGAATGCA 58.473 50.000 0.00 0.00 0.00 3.96
202 203 1.198637 GCCTCTGTGACTTGAATGCAC 59.801 52.381 0.00 0.00 0.00 4.57
203 204 1.808945 CCTCTGTGACTTGAATGCACC 59.191 52.381 0.00 0.00 0.00 5.01
204 205 1.808945 CTCTGTGACTTGAATGCACCC 59.191 52.381 0.00 0.00 0.00 4.61
205 206 0.518636 CTGTGACTTGAATGCACCCG 59.481 55.000 0.00 0.00 0.00 5.28
206 207 1.210155 GTGACTTGAATGCACCCGC 59.790 57.895 0.00 0.00 39.24 6.13
217 218 4.389576 CACCCGCAACGCAAGCTC 62.390 66.667 0.00 0.00 45.62 4.09
218 219 4.626081 ACCCGCAACGCAAGCTCT 62.626 61.111 0.00 0.00 45.62 4.09
219 220 4.093952 CCCGCAACGCAAGCTCTG 62.094 66.667 0.00 0.00 45.62 3.35
220 221 3.349006 CCGCAACGCAAGCTCTGT 61.349 61.111 0.00 0.00 45.62 3.41
221 222 2.127496 CGCAACGCAAGCTCTGTG 60.127 61.111 7.59 7.59 45.62 3.66
222 223 2.597713 CGCAACGCAAGCTCTGTGA 61.598 57.895 13.87 0.00 45.62 3.58
223 224 1.082496 GCAACGCAAGCTCTGTGAC 60.082 57.895 13.87 2.95 45.62 3.67
224 225 1.202568 CAACGCAAGCTCTGTGACG 59.797 57.895 13.87 7.50 45.62 4.35
225 226 1.956170 AACGCAAGCTCTGTGACGG 60.956 57.895 13.87 0.00 45.62 4.79
226 227 3.114616 CGCAAGCTCTGTGACGGG 61.115 66.667 0.00 0.00 37.79 5.28
227 228 2.031163 GCAAGCTCTGTGACGGGT 59.969 61.111 0.00 0.00 0.00 5.28
228 229 1.598130 GCAAGCTCTGTGACGGGTT 60.598 57.895 0.00 0.00 0.00 4.11
229 230 1.166531 GCAAGCTCTGTGACGGGTTT 61.167 55.000 0.00 0.00 0.00 3.27
230 231 1.308998 CAAGCTCTGTGACGGGTTTT 58.691 50.000 0.00 0.00 0.00 2.43
231 232 1.676006 CAAGCTCTGTGACGGGTTTTT 59.324 47.619 0.00 0.00 0.00 1.94
232 233 1.594331 AGCTCTGTGACGGGTTTTTC 58.406 50.000 0.00 0.00 0.00 2.29
233 234 0.591659 GCTCTGTGACGGGTTTTTCC 59.408 55.000 0.00 0.00 0.00 3.13
241 242 3.347411 CGGGTTTTTCCGTTTTGCA 57.653 47.368 0.00 0.00 44.60 4.08
242 243 1.641577 CGGGTTTTTCCGTTTTGCAA 58.358 45.000 0.00 0.00 44.60 4.08
243 244 1.590698 CGGGTTTTTCCGTTTTGCAAG 59.409 47.619 0.00 0.00 44.60 4.01
244 245 2.623535 GGGTTTTTCCGTTTTGCAAGT 58.376 42.857 0.00 0.00 37.00 3.16
245 246 3.734293 CGGGTTTTTCCGTTTTGCAAGTA 60.734 43.478 0.00 0.00 44.60 2.24
246 247 3.799963 GGGTTTTTCCGTTTTGCAAGTAG 59.200 43.478 0.00 0.00 37.00 2.57
247 248 4.426416 GGTTTTTCCGTTTTGCAAGTAGT 58.574 39.130 0.00 0.00 0.00 2.73
248 249 4.266739 GGTTTTTCCGTTTTGCAAGTAGTG 59.733 41.667 0.00 0.00 0.00 2.74
249 250 4.705337 TTTTCCGTTTTGCAAGTAGTGT 57.295 36.364 0.00 0.00 0.00 3.55
250 251 3.684103 TTCCGTTTTGCAAGTAGTGTG 57.316 42.857 0.00 0.00 0.00 3.82
251 252 2.907634 TCCGTTTTGCAAGTAGTGTGA 58.092 42.857 0.00 0.00 0.00 3.58
252 253 2.610374 TCCGTTTTGCAAGTAGTGTGAC 59.390 45.455 0.00 0.00 0.00 3.67
253 254 2.612212 CCGTTTTGCAAGTAGTGTGACT 59.388 45.455 0.00 0.00 0.00 3.41
254 255 3.805422 CCGTTTTGCAAGTAGTGTGACTA 59.195 43.478 0.00 0.00 0.00 2.59
255 256 4.271533 CCGTTTTGCAAGTAGTGTGACTAA 59.728 41.667 0.00 0.00 31.62 2.24
256 257 5.220700 CCGTTTTGCAAGTAGTGTGACTAAA 60.221 40.000 0.00 0.00 31.62 1.85
257 258 5.901884 CGTTTTGCAAGTAGTGTGACTAAAG 59.098 40.000 0.00 0.00 31.62 1.85
258 259 6.456449 CGTTTTGCAAGTAGTGTGACTAAAGT 60.456 38.462 0.00 0.00 31.62 2.66
259 260 5.984233 TTGCAAGTAGTGTGACTAAAGTG 57.016 39.130 0.00 0.00 31.62 3.16
260 261 3.807622 TGCAAGTAGTGTGACTAAAGTGC 59.192 43.478 0.00 0.00 35.89 4.40
261 262 3.807622 GCAAGTAGTGTGACTAAAGTGCA 59.192 43.478 0.00 0.00 35.64 4.57
262 263 4.318831 GCAAGTAGTGTGACTAAAGTGCAC 60.319 45.833 9.40 9.40 35.64 4.57
263 264 3.991367 AGTAGTGTGACTAAAGTGCACC 58.009 45.455 14.63 0.00 31.62 5.01
264 265 2.256117 AGTGTGACTAAAGTGCACCC 57.744 50.000 14.63 0.00 33.69 4.61
265 266 0.865769 GTGTGACTAAAGTGCACCCG 59.134 55.000 14.63 1.81 0.00 5.28
266 267 0.882927 TGTGACTAAAGTGCACCCGC 60.883 55.000 14.63 3.64 39.24 6.13
276 277 4.722855 GCACCCGCAGCGCAAATT 62.723 61.111 11.47 0.00 38.36 1.82
277 278 2.504681 CACCCGCAGCGCAAATTC 60.505 61.111 11.47 0.00 0.00 2.17
278 279 2.672996 ACCCGCAGCGCAAATTCT 60.673 55.556 11.47 0.00 0.00 2.40
279 280 1.376683 ACCCGCAGCGCAAATTCTA 60.377 52.632 11.47 0.00 0.00 2.10
280 281 0.958382 ACCCGCAGCGCAAATTCTAA 60.958 50.000 11.47 0.00 0.00 2.10
281 282 0.248215 CCCGCAGCGCAAATTCTAAG 60.248 55.000 11.47 0.00 0.00 2.18
282 283 0.726827 CCGCAGCGCAAATTCTAAGA 59.273 50.000 11.47 0.00 0.00 2.10
283 284 1.529826 CCGCAGCGCAAATTCTAAGAC 60.530 52.381 11.47 0.00 0.00 3.01
284 285 1.529826 CGCAGCGCAAATTCTAAGACC 60.530 52.381 11.47 0.00 0.00 3.85
285 286 1.529826 GCAGCGCAAATTCTAAGACCG 60.530 52.381 11.47 0.00 0.00 4.79
286 287 0.727398 AGCGCAAATTCTAAGACCGC 59.273 50.000 11.47 0.00 40.17 5.68
287 288 0.248094 GCGCAAATTCTAAGACCGCC 60.248 55.000 0.30 0.00 34.52 6.13
288 289 1.083489 CGCAAATTCTAAGACCGCCA 58.917 50.000 0.00 0.00 0.00 5.69
289 290 1.062587 CGCAAATTCTAAGACCGCCAG 59.937 52.381 0.00 0.00 0.00 4.85
290 291 2.084546 GCAAATTCTAAGACCGCCAGT 58.915 47.619 0.00 0.00 0.00 4.00
291 292 2.159517 GCAAATTCTAAGACCGCCAGTG 60.160 50.000 0.00 0.00 0.00 3.66
292 293 3.074412 CAAATTCTAAGACCGCCAGTGT 58.926 45.455 0.00 0.00 0.00 3.55
293 294 2.674796 ATTCTAAGACCGCCAGTGTC 57.325 50.000 0.00 0.00 0.00 3.67
294 295 1.334160 TTCTAAGACCGCCAGTGTCA 58.666 50.000 0.00 0.00 35.15 3.58
295 296 1.557099 TCTAAGACCGCCAGTGTCAT 58.443 50.000 0.00 0.00 35.15 3.06
296 297 1.899814 TCTAAGACCGCCAGTGTCATT 59.100 47.619 0.00 0.00 35.15 2.57
297 298 2.301870 TCTAAGACCGCCAGTGTCATTT 59.698 45.455 0.00 0.00 35.15 2.32
298 299 2.851263 AAGACCGCCAGTGTCATTTA 57.149 45.000 0.00 0.00 35.15 1.40
299 300 2.094762 AGACCGCCAGTGTCATTTAC 57.905 50.000 0.00 0.00 35.15 2.01
300 301 1.623811 AGACCGCCAGTGTCATTTACT 59.376 47.619 0.00 0.00 35.15 2.24
301 302 2.000447 GACCGCCAGTGTCATTTACTC 59.000 52.381 0.00 0.00 32.91 2.59
341 342 6.105397 TCATGCTATCAGATATCAAGCACA 57.895 37.500 18.40 9.76 45.18 4.57
480 481 3.833650 TGGTCATCTGGCATGATGTTTTT 59.166 39.130 19.42 0.00 43.03 1.94
668 669 4.278310 ACAGCCTTTGTTTCCTGTAAAGT 58.722 39.130 0.00 0.00 36.31 2.66
678 679 5.996513 TGTTTCCTGTAAAGTGCCGTATTAA 59.003 36.000 0.00 0.00 0.00 1.40
750 751 3.988379 TCAAGAAGCGCAAGAAATTGT 57.012 38.095 11.47 0.00 43.02 2.71
835 836 8.190326 TGACTAGTAGATTTGAGGAACTGAAA 57.810 34.615 3.59 0.00 46.90 2.69
1196 1200 3.888930 TCAACAATGTCCCAAGAAAGACC 59.111 43.478 0.00 0.00 31.76 3.85
1312 1316 5.463392 CGGAAATCTCGCTTCTCATGAATTA 59.537 40.000 0.00 0.00 0.00 1.40
1391 1396 3.214328 ACTTGAGTTCGAACAAAGGCAT 58.786 40.909 30.85 17.53 32.40 4.40
1576 1585 4.489771 CACCCCTGCACCCGGATC 62.490 72.222 0.73 0.00 0.00 3.36
1629 1638 3.126703 TTGCTCGGCTTTGGGGACA 62.127 57.895 0.00 0.00 39.83 4.02
1632 1641 4.344865 TCGGCTTTGGGGACAGCC 62.345 66.667 0.00 0.00 45.64 4.85
1653 1662 2.806929 CTCTGCCGCCTCTCTCTG 59.193 66.667 0.00 0.00 0.00 3.35
1656 1665 3.429080 CTGCCGCCTCTCTCTGCTC 62.429 68.421 0.00 0.00 0.00 4.26
1658 1667 3.898509 CCGCCTCTCTCTGCTCCG 61.899 72.222 0.00 0.00 0.00 4.63
1686 1695 2.346597 TGGTTTCCCCAATTCGCAC 58.653 52.632 0.00 0.00 41.50 5.34
1687 1696 0.468214 TGGTTTCCCCAATTCGCACA 60.468 50.000 0.00 0.00 41.50 4.57
1693 1702 2.480555 CCAATTCGCACAGACCGC 59.519 61.111 0.00 0.00 0.00 5.68
1694 1703 2.034879 CCAATTCGCACAGACCGCT 61.035 57.895 0.00 0.00 0.00 5.52
1765 1775 1.008538 GCTGGTTTGGTTCTGCACG 60.009 57.895 0.00 0.00 0.00 5.34
1766 1776 1.008538 CTGGTTTGGTTCTGCACGC 60.009 57.895 0.00 0.00 0.00 5.34
1767 1777 2.051345 GGTTTGGTTCTGCACGCG 60.051 61.111 3.53 3.53 0.00 6.01
1782 1792 4.166011 GCGCCGCCACTCATGAAC 62.166 66.667 0.00 0.00 0.00 3.18
1783 1793 3.853330 CGCCGCCACTCATGAACG 61.853 66.667 0.00 0.00 0.00 3.95
1799 1809 3.197790 CGGCCTGGATTGAGCGTG 61.198 66.667 0.00 0.00 0.00 5.34
1801 1811 2.747460 GCCTGGATTGAGCGTGCA 60.747 61.111 0.00 0.00 0.00 4.57
1802 1812 3.044059 GCCTGGATTGAGCGTGCAC 62.044 63.158 6.82 6.82 0.00 4.57
1803 1813 2.743752 CCTGGATTGAGCGTGCACG 61.744 63.158 34.01 34.01 43.27 5.34
1804 1814 2.741985 TGGATTGAGCGTGCACGG 60.742 61.111 37.47 20.93 40.23 4.94
1833 1848 1.868251 GGTGCTCGCGTTAGAGTCG 60.868 63.158 5.77 0.00 40.26 4.18
1840 1855 2.571757 CGTTAGAGTCGCCTGCCA 59.428 61.111 0.00 0.00 0.00 4.92
1853 1868 2.357881 TGCCAGACTGCTCAAGCG 60.358 61.111 0.00 0.00 45.83 4.68
1932 1949 2.606751 ATCCCTGGTACTATCTCCCG 57.393 55.000 0.00 0.00 0.00 5.14
1943 1960 5.984323 GGTACTATCTCCCGTCAATTTCTTC 59.016 44.000 0.00 0.00 0.00 2.87
1944 1961 5.677319 ACTATCTCCCGTCAATTTCTTCA 57.323 39.130 0.00 0.00 0.00 3.02
1985 2002 3.686726 CACTTGGTAGTTTCAGCATCTCC 59.313 47.826 0.00 0.00 30.26 3.71
2042 2108 7.212274 GTGAATGGATTATGGCTAGCAAAAAT 58.788 34.615 18.24 11.81 0.00 1.82
2063 2129 2.124411 ACTGTAACTCCAACCACCAGT 58.876 47.619 0.00 0.00 0.00 4.00
2085 2151 6.548622 CAGTGTCATTCCCAATTCCTATGAAT 59.451 38.462 0.00 0.00 43.08 2.57
2134 2200 3.660865 ACCTGACCGTGTTAGTTGAATC 58.339 45.455 0.00 0.00 0.00 2.52
2163 2229 2.839486 TCAACGTCAAGAAGGAGCAT 57.161 45.000 0.00 0.00 0.00 3.79
2164 2230 3.126001 TCAACGTCAAGAAGGAGCATT 57.874 42.857 0.00 0.00 0.00 3.56
2181 2247 4.972733 TGCCGCTGCCCAACACAT 62.973 61.111 0.00 0.00 36.33 3.21
2186 2252 1.902918 GCTGCCCAACACATCCACA 60.903 57.895 0.00 0.00 0.00 4.17
2206 2272 3.118038 ACAGCCAGAGGACACAAAAACTA 60.118 43.478 0.00 0.00 0.00 2.24
2207 2273 3.251004 CAGCCAGAGGACACAAAAACTAC 59.749 47.826 0.00 0.00 0.00 2.73
2228 2296 7.241376 ACTACAATTTTGTTAGTTAGCGATGC 58.759 34.615 0.63 0.00 42.35 3.91
2259 2327 2.203195 AGTGCTTGTTGCTCCGCA 60.203 55.556 0.00 0.00 43.37 5.69
2268 2336 0.097674 GTTGCTCCGCATCATGTGTC 59.902 55.000 0.00 0.00 38.76 3.67
2302 2370 2.743928 CTGCCGCACTTCCCTGTC 60.744 66.667 0.00 0.00 0.00 3.51
2303 2371 3.535629 CTGCCGCACTTCCCTGTCA 62.536 63.158 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.333636 ATGGGAGAAGAGACAGGCGG 61.334 60.000 0.00 0.00 0.00 6.13
1 2 0.103937 GATGGGAGAAGAGACAGGCG 59.896 60.000 0.00 0.00 0.00 5.52
2 3 0.103937 CGATGGGAGAAGAGACAGGC 59.896 60.000 0.00 0.00 0.00 4.85
3 4 0.749649 CCGATGGGAGAAGAGACAGG 59.250 60.000 0.00 0.00 34.06 4.00
4 5 0.103937 GCCGATGGGAGAAGAGACAG 59.896 60.000 0.00 0.00 34.06 3.51
5 6 0.614697 TGCCGATGGGAGAAGAGACA 60.615 55.000 0.00 0.00 34.06 3.41
6 7 0.537188 TTGCCGATGGGAGAAGAGAC 59.463 55.000 0.00 0.00 34.06 3.36
7 8 1.208052 CTTTGCCGATGGGAGAAGAGA 59.792 52.381 0.00 0.00 34.06 3.10
8 9 1.208052 TCTTTGCCGATGGGAGAAGAG 59.792 52.381 0.00 0.00 33.50 2.85
9 10 1.275666 TCTTTGCCGATGGGAGAAGA 58.724 50.000 0.00 3.11 35.02 2.87
10 11 1.740025 GTTCTTTGCCGATGGGAGAAG 59.260 52.381 0.00 0.56 34.06 2.85
11 12 1.073125 TGTTCTTTGCCGATGGGAGAA 59.927 47.619 0.00 0.00 34.06 2.87
12 13 0.690192 TGTTCTTTGCCGATGGGAGA 59.310 50.000 0.00 0.00 34.06 3.71
13 14 0.804989 GTGTTCTTTGCCGATGGGAG 59.195 55.000 0.00 0.00 34.06 4.30
14 15 0.953471 CGTGTTCTTTGCCGATGGGA 60.953 55.000 0.00 0.00 34.06 4.37
15 16 0.953471 TCGTGTTCTTTGCCGATGGG 60.953 55.000 0.00 0.00 0.00 4.00
16 17 0.871722 TTCGTGTTCTTTGCCGATGG 59.128 50.000 0.00 0.00 0.00 3.51
17 18 1.262950 TGTTCGTGTTCTTTGCCGATG 59.737 47.619 0.00 0.00 0.00 3.84
18 19 1.531149 CTGTTCGTGTTCTTTGCCGAT 59.469 47.619 0.00 0.00 0.00 4.18
19 20 0.934496 CTGTTCGTGTTCTTTGCCGA 59.066 50.000 0.00 0.00 0.00 5.54
20 21 0.934496 TCTGTTCGTGTTCTTTGCCG 59.066 50.000 0.00 0.00 0.00 5.69
21 22 1.668751 TGTCTGTTCGTGTTCTTTGCC 59.331 47.619 0.00 0.00 0.00 4.52
22 23 2.607635 TCTGTCTGTTCGTGTTCTTTGC 59.392 45.455 0.00 0.00 0.00 3.68
23 24 4.112634 TCTCTGTCTGTTCGTGTTCTTTG 58.887 43.478 0.00 0.00 0.00 2.77
24 25 4.386867 TCTCTGTCTGTTCGTGTTCTTT 57.613 40.909 0.00 0.00 0.00 2.52
25 26 4.113354 GTTCTCTGTCTGTTCGTGTTCTT 58.887 43.478 0.00 0.00 0.00 2.52
26 27 3.130516 TGTTCTCTGTCTGTTCGTGTTCT 59.869 43.478 0.00 0.00 0.00 3.01
27 28 3.444916 TGTTCTCTGTCTGTTCGTGTTC 58.555 45.455 0.00 0.00 0.00 3.18
28 29 3.520290 TGTTCTCTGTCTGTTCGTGTT 57.480 42.857 0.00 0.00 0.00 3.32
29 30 3.520290 TTGTTCTCTGTCTGTTCGTGT 57.480 42.857 0.00 0.00 0.00 4.49
30 31 3.246226 CCTTTGTTCTCTGTCTGTTCGTG 59.754 47.826 0.00 0.00 0.00 4.35
31 32 3.132289 TCCTTTGTTCTCTGTCTGTTCGT 59.868 43.478 0.00 0.00 0.00 3.85
32 33 3.717707 TCCTTTGTTCTCTGTCTGTTCG 58.282 45.455 0.00 0.00 0.00 3.95
33 34 4.950050 TCTCCTTTGTTCTCTGTCTGTTC 58.050 43.478 0.00 0.00 0.00 3.18
34 35 4.202305 CCTCTCCTTTGTTCTCTGTCTGTT 60.202 45.833 0.00 0.00 0.00 3.16
35 36 3.323403 CCTCTCCTTTGTTCTCTGTCTGT 59.677 47.826 0.00 0.00 0.00 3.41
36 37 3.306641 CCCTCTCCTTTGTTCTCTGTCTG 60.307 52.174 0.00 0.00 0.00 3.51
37 38 2.903135 CCCTCTCCTTTGTTCTCTGTCT 59.097 50.000 0.00 0.00 0.00 3.41
38 39 2.027653 CCCCTCTCCTTTGTTCTCTGTC 60.028 54.545 0.00 0.00 0.00 3.51
39 40 1.981495 CCCCTCTCCTTTGTTCTCTGT 59.019 52.381 0.00 0.00 0.00 3.41
40 41 1.280421 CCCCCTCTCCTTTGTTCTCTG 59.720 57.143 0.00 0.00 0.00 3.35
41 42 1.662686 CCCCCTCTCCTTTGTTCTCT 58.337 55.000 0.00 0.00 0.00 3.10
42 43 0.034960 GCCCCCTCTCCTTTGTTCTC 60.035 60.000 0.00 0.00 0.00 2.87
43 44 0.476611 AGCCCCCTCTCCTTTGTTCT 60.477 55.000 0.00 0.00 0.00 3.01
44 45 1.286248 TAGCCCCCTCTCCTTTGTTC 58.714 55.000 0.00 0.00 0.00 3.18
45 46 1.566231 CATAGCCCCCTCTCCTTTGTT 59.434 52.381 0.00 0.00 0.00 2.83
46 47 1.216990 CATAGCCCCCTCTCCTTTGT 58.783 55.000 0.00 0.00 0.00 2.83
47 48 0.179006 GCATAGCCCCCTCTCCTTTG 60.179 60.000 0.00 0.00 0.00 2.77
48 49 0.624500 TGCATAGCCCCCTCTCCTTT 60.625 55.000 0.00 0.00 0.00 3.11
49 50 0.624500 TTGCATAGCCCCCTCTCCTT 60.625 55.000 0.00 0.00 0.00 3.36
50 51 1.004758 TTGCATAGCCCCCTCTCCT 59.995 57.895 0.00 0.00 0.00 3.69
51 52 1.149401 GTTGCATAGCCCCCTCTCC 59.851 63.158 0.00 0.00 0.00 3.71
52 53 0.475906 ATGTTGCATAGCCCCCTCTC 59.524 55.000 0.00 0.00 0.00 3.20
53 54 0.929244 AATGTTGCATAGCCCCCTCT 59.071 50.000 0.00 0.00 0.00 3.69
54 55 2.508526 CTAATGTTGCATAGCCCCCTC 58.491 52.381 0.00 0.00 0.00 4.30
55 56 1.479389 GCTAATGTTGCATAGCCCCCT 60.479 52.381 5.86 0.00 38.85 4.79
56 57 0.961753 GCTAATGTTGCATAGCCCCC 59.038 55.000 5.86 0.00 38.85 5.40
57 58 1.610522 CAGCTAATGTTGCATAGCCCC 59.389 52.381 12.36 0.00 44.42 5.80
58 59 2.551459 CTCAGCTAATGTTGCATAGCCC 59.449 50.000 12.36 0.00 44.42 5.19
59 60 2.551459 CCTCAGCTAATGTTGCATAGCC 59.449 50.000 12.36 0.00 44.42 3.93
60 61 3.470709 TCCTCAGCTAATGTTGCATAGC 58.529 45.455 8.68 8.68 43.83 2.97
61 62 4.694509 GGATCCTCAGCTAATGTTGCATAG 59.305 45.833 3.84 0.00 0.00 2.23
62 63 4.102996 TGGATCCTCAGCTAATGTTGCATA 59.897 41.667 14.23 0.00 0.00 3.14
63 64 3.117776 TGGATCCTCAGCTAATGTTGCAT 60.118 43.478 14.23 0.00 0.00 3.96
64 65 2.239402 TGGATCCTCAGCTAATGTTGCA 59.761 45.455 14.23 0.00 0.00 4.08
65 66 2.877168 CTGGATCCTCAGCTAATGTTGC 59.123 50.000 14.23 0.00 0.00 4.17
66 67 4.378774 CTCTGGATCCTCAGCTAATGTTG 58.621 47.826 14.23 0.00 34.91 3.33
67 68 3.390639 CCTCTGGATCCTCAGCTAATGTT 59.609 47.826 14.23 0.00 34.91 2.71
68 69 2.971330 CCTCTGGATCCTCAGCTAATGT 59.029 50.000 14.23 0.00 34.91 2.71
69 70 2.971330 ACCTCTGGATCCTCAGCTAATG 59.029 50.000 14.23 0.00 34.91 1.90
70 71 3.116784 AGACCTCTGGATCCTCAGCTAAT 60.117 47.826 14.23 0.00 34.91 1.73
71 72 2.246067 AGACCTCTGGATCCTCAGCTAA 59.754 50.000 14.23 0.00 34.91 3.09
72 73 1.856259 AGACCTCTGGATCCTCAGCTA 59.144 52.381 14.23 0.00 34.91 3.32
73 74 0.636101 AGACCTCTGGATCCTCAGCT 59.364 55.000 14.23 0.06 34.91 4.24
74 75 1.494960 AAGACCTCTGGATCCTCAGC 58.505 55.000 14.23 0.00 34.91 4.26
75 76 2.836981 ACAAAGACCTCTGGATCCTCAG 59.163 50.000 14.23 8.37 36.17 3.35
76 77 2.568956 CACAAAGACCTCTGGATCCTCA 59.431 50.000 14.23 0.00 0.00 3.86
77 78 2.679349 GCACAAAGACCTCTGGATCCTC 60.679 54.545 14.23 1.10 0.00 3.71
78 79 1.280421 GCACAAAGACCTCTGGATCCT 59.720 52.381 14.23 0.00 0.00 3.24
79 80 1.003580 TGCACAAAGACCTCTGGATCC 59.996 52.381 4.20 4.20 0.00 3.36
80 81 2.479566 TGCACAAAGACCTCTGGATC 57.520 50.000 0.00 0.00 0.00 3.36
81 82 2.373169 TCTTGCACAAAGACCTCTGGAT 59.627 45.455 0.00 0.00 40.09 3.41
82 83 1.768275 TCTTGCACAAAGACCTCTGGA 59.232 47.619 0.00 0.00 40.09 3.86
83 84 2.260844 TCTTGCACAAAGACCTCTGG 57.739 50.000 0.00 0.00 40.09 3.86
84 85 4.637483 TTTTCTTGCACAAAGACCTCTG 57.363 40.909 0.00 0.00 44.77 3.35
85 86 4.889409 TCATTTTCTTGCACAAAGACCTCT 59.111 37.500 0.00 0.00 44.77 3.69
86 87 5.186996 TCATTTTCTTGCACAAAGACCTC 57.813 39.130 0.00 0.00 44.77 3.85
87 88 5.535333 CATCATTTTCTTGCACAAAGACCT 58.465 37.500 0.00 0.00 44.77 3.85
88 89 4.151157 GCATCATTTTCTTGCACAAAGACC 59.849 41.667 0.00 0.00 44.77 3.85
89 90 4.746115 TGCATCATTTTCTTGCACAAAGAC 59.254 37.500 0.00 0.00 44.77 3.01
90 91 4.946445 TGCATCATTTTCTTGCACAAAGA 58.054 34.783 0.00 0.00 43.37 2.52
91 92 4.377022 GCTGCATCATTTTCTTGCACAAAG 60.377 41.667 0.00 0.00 41.18 2.77
92 93 3.495377 GCTGCATCATTTTCTTGCACAAA 59.505 39.130 0.00 0.00 41.18 2.83
93 94 3.061322 GCTGCATCATTTTCTTGCACAA 58.939 40.909 0.00 0.00 41.18 3.33
94 95 2.610976 GGCTGCATCATTTTCTTGCACA 60.611 45.455 0.50 0.00 41.18 4.57
95 96 1.997606 GGCTGCATCATTTTCTTGCAC 59.002 47.619 0.50 0.00 41.18 4.57
96 97 1.066716 GGGCTGCATCATTTTCTTGCA 60.067 47.619 0.50 0.00 43.63 4.08
97 98 1.066716 TGGGCTGCATCATTTTCTTGC 60.067 47.619 0.50 0.00 36.91 4.01
98 99 2.494471 TCTGGGCTGCATCATTTTCTTG 59.506 45.455 0.50 0.00 0.00 3.02
99 100 2.758979 CTCTGGGCTGCATCATTTTCTT 59.241 45.455 0.50 0.00 0.00 2.52
100 101 2.376109 CTCTGGGCTGCATCATTTTCT 58.624 47.619 0.50 0.00 0.00 2.52
101 102 1.407979 CCTCTGGGCTGCATCATTTTC 59.592 52.381 0.50 0.00 0.00 2.29
102 103 1.481871 CCTCTGGGCTGCATCATTTT 58.518 50.000 0.50 0.00 0.00 1.82
103 104 3.202548 CCTCTGGGCTGCATCATTT 57.797 52.632 0.50 0.00 0.00 2.32
138 139 0.934496 TTCTCTGTTTTGCGGTCACG 59.066 50.000 0.00 0.00 44.63 4.35
139 140 1.002792 GGTTCTCTGTTTTGCGGTCAC 60.003 52.381 0.00 0.00 0.00 3.67
140 141 1.305201 GGTTCTCTGTTTTGCGGTCA 58.695 50.000 0.00 0.00 0.00 4.02
141 142 0.234884 CGGTTCTCTGTTTTGCGGTC 59.765 55.000 0.00 0.00 0.00 4.79
142 143 1.164041 CCGGTTCTCTGTTTTGCGGT 61.164 55.000 0.00 0.00 0.00 5.68
143 144 1.574428 CCGGTTCTCTGTTTTGCGG 59.426 57.895 0.00 0.00 0.00 5.69
144 145 1.574428 CCCGGTTCTCTGTTTTGCG 59.426 57.895 0.00 0.00 0.00 4.85
145 146 1.285950 GCCCGGTTCTCTGTTTTGC 59.714 57.895 0.00 0.00 0.00 3.68
146 147 1.164041 ACGCCCGGTTCTCTGTTTTG 61.164 55.000 0.00 0.00 0.00 2.44
147 148 0.883370 GACGCCCGGTTCTCTGTTTT 60.883 55.000 0.00 0.00 0.00 2.43
148 149 1.301479 GACGCCCGGTTCTCTGTTT 60.301 57.895 0.00 0.00 0.00 2.83
149 150 2.342648 GACGCCCGGTTCTCTGTT 59.657 61.111 0.00 0.00 0.00 3.16
150 151 3.692406 GGACGCCCGGTTCTCTGT 61.692 66.667 0.00 0.00 0.00 3.41
161 162 4.668118 TTGAACCGGTCGGACGCC 62.668 66.667 16.90 2.83 38.96 5.68
162 163 3.408851 GTTGAACCGGTCGGACGC 61.409 66.667 16.90 5.35 38.96 5.19
163 164 1.731969 GAGTTGAACCGGTCGGACG 60.732 63.158 16.90 0.00 38.96 4.79
164 165 1.731969 CGAGTTGAACCGGTCGGAC 60.732 63.158 16.90 6.83 38.96 4.79
165 166 2.646719 CGAGTTGAACCGGTCGGA 59.353 61.111 16.90 0.00 38.96 4.55
166 167 3.110178 GCGAGTTGAACCGGTCGG 61.110 66.667 8.04 7.97 42.03 4.79
167 168 3.110178 GGCGAGTTGAACCGGTCG 61.110 66.667 8.04 7.24 35.51 4.79
168 169 1.737008 GAGGCGAGTTGAACCGGTC 60.737 63.158 8.04 1.72 0.00 4.79
169 170 2.207924 AGAGGCGAGTTGAACCGGT 61.208 57.895 0.00 0.00 0.00 5.28
170 171 1.738099 CAGAGGCGAGTTGAACCGG 60.738 63.158 0.00 0.00 0.00 5.28
171 172 1.006102 ACAGAGGCGAGTTGAACCG 60.006 57.895 0.00 0.00 0.00 4.44
172 173 0.033504 TCACAGAGGCGAGTTGAACC 59.966 55.000 0.00 0.00 0.00 3.62
173 174 1.140816 GTCACAGAGGCGAGTTGAAC 58.859 55.000 0.00 0.00 0.00 3.18
174 175 1.040646 AGTCACAGAGGCGAGTTGAA 58.959 50.000 0.00 0.00 0.00 2.69
175 176 1.040646 AAGTCACAGAGGCGAGTTGA 58.959 50.000 0.00 0.00 0.00 3.18
176 177 1.143305 CAAGTCACAGAGGCGAGTTG 58.857 55.000 0.00 0.00 36.52 3.16
177 178 1.040646 TCAAGTCACAGAGGCGAGTT 58.959 50.000 0.00 0.00 0.00 3.01
178 179 1.040646 TTCAAGTCACAGAGGCGAGT 58.959 50.000 0.00 0.00 0.00 4.18
179 180 1.998315 CATTCAAGTCACAGAGGCGAG 59.002 52.381 0.00 0.00 0.00 5.03
180 181 1.941209 GCATTCAAGTCACAGAGGCGA 60.941 52.381 0.00 0.00 0.00 5.54
181 182 0.445436 GCATTCAAGTCACAGAGGCG 59.555 55.000 0.00 0.00 0.00 5.52
182 183 1.198637 GTGCATTCAAGTCACAGAGGC 59.801 52.381 0.00 0.00 0.00 4.70
183 184 1.808945 GGTGCATTCAAGTCACAGAGG 59.191 52.381 0.00 0.00 32.69 3.69
184 185 1.808945 GGGTGCATTCAAGTCACAGAG 59.191 52.381 0.00 0.00 32.69 3.35
185 186 1.877680 CGGGTGCATTCAAGTCACAGA 60.878 52.381 0.00 0.00 32.69 3.41
186 187 0.518636 CGGGTGCATTCAAGTCACAG 59.481 55.000 0.00 0.00 32.69 3.66
187 188 1.514678 GCGGGTGCATTCAAGTCACA 61.515 55.000 0.00 0.00 42.15 3.58
188 189 1.210155 GCGGGTGCATTCAAGTCAC 59.790 57.895 0.00 0.00 42.15 3.67
189 190 3.667087 GCGGGTGCATTCAAGTCA 58.333 55.556 0.00 0.00 42.15 3.41
200 201 4.389576 GAGCTTGCGTTGCGGGTG 62.390 66.667 0.00 0.00 35.28 4.61
201 202 4.626081 AGAGCTTGCGTTGCGGGT 62.626 61.111 0.00 0.00 35.28 5.28
202 203 4.093952 CAGAGCTTGCGTTGCGGG 62.094 66.667 0.00 0.00 35.28 6.13
203 204 3.349006 ACAGAGCTTGCGTTGCGG 61.349 61.111 0.00 0.00 35.28 5.69
204 205 2.127496 CACAGAGCTTGCGTTGCG 60.127 61.111 0.00 0.00 35.28 4.85
205 206 1.082496 GTCACAGAGCTTGCGTTGC 60.082 57.895 0.00 0.00 0.00 4.17
206 207 1.202568 CGTCACAGAGCTTGCGTTG 59.797 57.895 0.00 0.00 0.00 4.10
207 208 1.956170 CCGTCACAGAGCTTGCGTT 60.956 57.895 0.00 0.00 0.00 4.84
208 209 2.356313 CCGTCACAGAGCTTGCGT 60.356 61.111 0.00 0.00 0.00 5.24
209 210 3.114616 CCCGTCACAGAGCTTGCG 61.115 66.667 0.00 0.00 0.00 4.85
210 211 1.166531 AAACCCGTCACAGAGCTTGC 61.167 55.000 0.00 0.00 0.00 4.01
211 212 1.308998 AAAACCCGTCACAGAGCTTG 58.691 50.000 0.00 0.00 0.00 4.01
212 213 1.947456 GAAAAACCCGTCACAGAGCTT 59.053 47.619 0.00 0.00 0.00 3.74
213 214 1.594331 GAAAAACCCGTCACAGAGCT 58.406 50.000 0.00 0.00 0.00 4.09
214 215 0.591659 GGAAAAACCCGTCACAGAGC 59.408 55.000 0.00 0.00 0.00 4.09
215 216 0.865769 CGGAAAAACCCGTCACAGAG 59.134 55.000 0.00 0.00 44.23 3.35
216 217 2.994990 CGGAAAAACCCGTCACAGA 58.005 52.632 0.00 0.00 44.23 3.41
224 225 2.623535 ACTTGCAAAACGGAAAAACCC 58.376 42.857 0.00 0.00 34.64 4.11
225 226 4.266739 CACTACTTGCAAAACGGAAAAACC 59.733 41.667 0.00 0.00 0.00 3.27
226 227 4.860352 ACACTACTTGCAAAACGGAAAAAC 59.140 37.500 0.00 0.00 0.00 2.43
227 228 4.859798 CACACTACTTGCAAAACGGAAAAA 59.140 37.500 0.00 0.00 0.00 1.94
228 229 4.156190 TCACACTACTTGCAAAACGGAAAA 59.844 37.500 0.00 0.00 0.00 2.29
229 230 3.690139 TCACACTACTTGCAAAACGGAAA 59.310 39.130 0.00 0.00 0.00 3.13
230 231 3.064271 GTCACACTACTTGCAAAACGGAA 59.936 43.478 0.00 0.00 0.00 4.30
231 232 2.610374 GTCACACTACTTGCAAAACGGA 59.390 45.455 0.00 0.00 0.00 4.69
232 233 2.612212 AGTCACACTACTTGCAAAACGG 59.388 45.455 0.00 0.00 0.00 4.44
233 234 3.944422 AGTCACACTACTTGCAAAACG 57.056 42.857 0.00 0.00 0.00 3.60
234 235 6.687105 CACTTTAGTCACACTACTTGCAAAAC 59.313 38.462 0.00 0.00 28.93 2.43
235 236 6.676943 GCACTTTAGTCACACTACTTGCAAAA 60.677 38.462 0.00 0.00 33.48 2.44
236 237 5.220777 GCACTTTAGTCACACTACTTGCAAA 60.221 40.000 0.00 0.00 33.48 3.68
237 238 4.272504 GCACTTTAGTCACACTACTTGCAA 59.727 41.667 0.00 0.00 33.48 4.08
238 239 3.807622 GCACTTTAGTCACACTACTTGCA 59.192 43.478 0.00 0.00 33.48 4.08
239 240 3.807622 TGCACTTTAGTCACACTACTTGC 59.192 43.478 0.00 0.00 33.69 4.01
240 241 4.211374 GGTGCACTTTAGTCACACTACTTG 59.789 45.833 17.98 0.00 34.38 3.16
241 242 4.377897 GGTGCACTTTAGTCACACTACTT 58.622 43.478 17.98 0.00 34.38 2.24
242 243 3.244112 GGGTGCACTTTAGTCACACTACT 60.244 47.826 17.98 0.00 34.38 2.57
243 244 3.064931 GGGTGCACTTTAGTCACACTAC 58.935 50.000 17.98 0.00 34.38 2.73
244 245 2.288579 CGGGTGCACTTTAGTCACACTA 60.289 50.000 17.98 0.00 34.38 2.74
245 246 1.540363 CGGGTGCACTTTAGTCACACT 60.540 52.381 17.98 0.00 34.38 3.55
246 247 0.865769 CGGGTGCACTTTAGTCACAC 59.134 55.000 17.98 8.51 33.63 3.82
247 248 0.882927 GCGGGTGCACTTTAGTCACA 60.883 55.000 17.98 0.00 42.15 3.58
248 249 1.866925 GCGGGTGCACTTTAGTCAC 59.133 57.895 17.98 0.00 42.15 3.67
249 250 4.371975 GCGGGTGCACTTTAGTCA 57.628 55.556 17.98 0.00 42.15 3.41
260 261 1.643868 TAGAATTTGCGCTGCGGGTG 61.644 55.000 24.61 0.00 0.00 4.61
261 262 0.958382 TTAGAATTTGCGCTGCGGGT 60.958 50.000 24.61 0.00 0.00 5.28
262 263 0.248215 CTTAGAATTTGCGCTGCGGG 60.248 55.000 24.61 0.00 0.00 6.13
263 264 0.726827 TCTTAGAATTTGCGCTGCGG 59.273 50.000 24.61 5.63 0.00 5.69
264 265 1.529826 GGTCTTAGAATTTGCGCTGCG 60.530 52.381 19.17 19.17 0.00 5.18
265 266 1.529826 CGGTCTTAGAATTTGCGCTGC 60.530 52.381 9.73 0.00 0.00 5.25
266 267 1.529826 GCGGTCTTAGAATTTGCGCTG 60.530 52.381 9.73 0.00 0.00 5.18
267 268 0.727398 GCGGTCTTAGAATTTGCGCT 59.273 50.000 9.73 0.00 0.00 5.92
268 269 0.248094 GGCGGTCTTAGAATTTGCGC 60.248 55.000 0.00 0.00 0.00 6.09
269 270 1.062587 CTGGCGGTCTTAGAATTTGCG 59.937 52.381 0.00 0.00 0.00 4.85
270 271 2.084546 ACTGGCGGTCTTAGAATTTGC 58.915 47.619 0.00 0.00 0.00 3.68
271 272 3.074412 ACACTGGCGGTCTTAGAATTTG 58.926 45.455 0.00 0.00 0.00 2.32
272 273 3.244422 TGACACTGGCGGTCTTAGAATTT 60.244 43.478 0.00 0.00 36.26 1.82
273 274 2.301870 TGACACTGGCGGTCTTAGAATT 59.698 45.455 0.00 0.00 36.26 2.17
274 275 1.899814 TGACACTGGCGGTCTTAGAAT 59.100 47.619 0.00 0.00 36.26 2.40
275 276 1.334160 TGACACTGGCGGTCTTAGAA 58.666 50.000 0.00 0.00 36.26 2.10
276 277 1.557099 ATGACACTGGCGGTCTTAGA 58.443 50.000 0.00 0.00 36.26 2.10
277 278 2.386661 AATGACACTGGCGGTCTTAG 57.613 50.000 0.00 0.00 36.26 2.18
278 279 2.851263 AAATGACACTGGCGGTCTTA 57.149 45.000 0.00 0.00 36.26 2.10
279 280 2.038557 AGTAAATGACACTGGCGGTCTT 59.961 45.455 0.00 0.00 36.26 3.01
280 281 1.623811 AGTAAATGACACTGGCGGTCT 59.376 47.619 0.00 0.00 36.26 3.85
281 282 2.000447 GAGTAAATGACACTGGCGGTC 59.000 52.381 0.00 0.00 35.83 4.79
282 283 1.671850 CGAGTAAATGACACTGGCGGT 60.672 52.381 0.00 0.00 0.00 5.68
283 284 0.999406 CGAGTAAATGACACTGGCGG 59.001 55.000 0.00 0.00 0.00 6.13
284 285 1.654105 GACGAGTAAATGACACTGGCG 59.346 52.381 0.00 0.00 0.00 5.69
285 286 1.654105 CGACGAGTAAATGACACTGGC 59.346 52.381 0.00 0.00 0.00 4.85
286 287 3.211803 TCGACGAGTAAATGACACTGG 57.788 47.619 0.00 0.00 0.00 4.00
287 288 6.864560 TTATTCGACGAGTAAATGACACTG 57.135 37.500 10.03 0.00 0.00 3.66
288 289 7.310664 TCTTTATTCGACGAGTAAATGACACT 58.689 34.615 21.20 0.00 0.00 3.55
289 290 7.272948 ACTCTTTATTCGACGAGTAAATGACAC 59.727 37.037 21.20 0.00 35.15 3.67
290 291 7.272731 CACTCTTTATTCGACGAGTAAATGACA 59.727 37.037 21.20 8.86 35.15 3.58
291 292 7.272948 ACACTCTTTATTCGACGAGTAAATGAC 59.727 37.037 21.20 0.00 35.15 3.06
292 293 7.310664 ACACTCTTTATTCGACGAGTAAATGA 58.689 34.615 21.20 18.36 35.15 2.57
293 294 7.507672 ACACTCTTTATTCGACGAGTAAATG 57.492 36.000 21.20 18.75 35.15 2.32
294 295 7.811236 TGAACACTCTTTATTCGACGAGTAAAT 59.189 33.333 21.20 9.25 35.15 1.40
295 296 7.140705 TGAACACTCTTTATTCGACGAGTAAA 58.859 34.615 20.14 20.14 35.15 2.01
296 297 6.671190 TGAACACTCTTTATTCGACGAGTAA 58.329 36.000 8.56 8.56 35.15 2.24
297 298 6.245115 TGAACACTCTTTATTCGACGAGTA 57.755 37.500 0.00 0.00 35.15 2.59
298 299 5.117355 TGAACACTCTTTATTCGACGAGT 57.883 39.130 0.00 0.00 37.22 4.18
299 300 5.499334 GCATGAACACTCTTTATTCGACGAG 60.499 44.000 0.00 0.00 0.00 4.18
300 301 4.326278 GCATGAACACTCTTTATTCGACGA 59.674 41.667 0.00 0.00 0.00 4.20
301 302 4.327357 AGCATGAACACTCTTTATTCGACG 59.673 41.667 0.00 0.00 0.00 5.12
371 372 3.133183 GGGGTCATCAGTAGAAGTTCTCC 59.867 52.174 9.12 0.00 0.00 3.71
480 481 4.776349 ACTCACCATGTTTACAGTGAACA 58.224 39.130 12.92 12.92 38.68 3.18
835 836 6.785963 AGAATCCAAATATGCTCCCAAATGAT 59.214 34.615 0.00 0.00 0.00 2.45
925 927 6.299141 ACTTACCATGAGTGAAAGTGTTGAT 58.701 36.000 0.00 0.00 33.15 2.57
1312 1316 1.064166 AGCATGCTAGCAAACCTCCAT 60.064 47.619 23.54 0.00 36.85 3.41
1483 1492 2.295885 CCAATGAGCCCAACAGAGATC 58.704 52.381 0.00 0.00 0.00 2.75
1484 1493 1.637553 ACCAATGAGCCCAACAGAGAT 59.362 47.619 0.00 0.00 0.00 2.75
1497 1506 0.608035 GGGGCGAACTTCACCAATGA 60.608 55.000 0.00 0.00 0.00 2.57
1559 1568 4.489771 GATCCGGGTGCAGGGGTG 62.490 72.222 0.00 0.00 0.00 4.61
1592 1601 4.052518 GCACTGGGCCACCTGGAT 62.053 66.667 0.00 0.00 39.81 3.41
1604 1613 2.896801 AAAGCCGAGCAACGCACTG 61.897 57.895 0.00 0.00 41.07 3.66
1632 1641 4.567385 GAGAGGCGGCAGAGCTCG 62.567 72.222 13.08 4.60 37.29 5.03
1643 1652 2.757917 ACCGGAGCAGAGAGAGGC 60.758 66.667 9.46 0.00 0.00 4.70
1644 1653 0.754957 ATCACCGGAGCAGAGAGAGG 60.755 60.000 9.46 0.00 0.00 3.69
1653 1662 0.889186 AACCAACACATCACCGGAGC 60.889 55.000 9.46 0.00 0.00 4.70
1656 1665 0.596082 GGAAACCAACACATCACCGG 59.404 55.000 0.00 0.00 0.00 5.28
1713 1722 4.374702 CACGCACAGAGCCAACGC 62.375 66.667 0.00 0.00 41.38 4.84
1715 1724 1.571460 CTTCACGCACAGAGCCAAC 59.429 57.895 0.00 0.00 41.38 3.77
1716 1725 2.253758 GCTTCACGCACAGAGCCAA 61.254 57.895 0.00 0.00 41.38 4.52
1718 1727 2.358003 AGCTTCACGCACAGAGCC 60.358 61.111 0.00 0.00 42.61 4.70
1720 1729 2.091112 CGGAGCTTCACGCACAGAG 61.091 63.158 0.00 0.00 42.61 3.35
1737 1747 0.798776 CCAAACCAGCAGTAGAAGCG 59.201 55.000 0.00 0.00 37.01 4.68
1739 1749 3.499918 CAGAACCAAACCAGCAGTAGAAG 59.500 47.826 0.00 0.00 0.00 2.85
1740 1750 3.476552 CAGAACCAAACCAGCAGTAGAA 58.523 45.455 0.00 0.00 0.00 2.10
1743 1753 1.133945 TGCAGAACCAAACCAGCAGTA 60.134 47.619 0.00 0.00 0.00 2.74
1746 1756 1.723608 CGTGCAGAACCAAACCAGCA 61.724 55.000 0.00 0.00 0.00 4.41
1765 1775 4.166011 GTTCATGAGTGGCGGCGC 62.166 66.667 26.17 26.17 0.00 6.53
1766 1776 3.853330 CGTTCATGAGTGGCGGCG 61.853 66.667 0.51 0.51 0.00 6.46
1767 1777 3.499737 CCGTTCATGAGTGGCGGC 61.500 66.667 0.00 0.00 37.43 6.53
1770 1780 2.045926 AGGCCGTTCATGAGTGGC 60.046 61.111 24.67 24.67 46.82 5.01
1777 1787 0.749454 GCTCAATCCAGGCCGTTCAT 60.749 55.000 0.00 0.00 0.00 2.57
1782 1792 3.197790 CACGCTCAATCCAGGCCG 61.198 66.667 0.00 0.00 0.00 6.13
1783 1793 3.512516 GCACGCTCAATCCAGGCC 61.513 66.667 0.00 0.00 0.00 5.19
1814 1824 1.516603 GACTCTAACGCGAGCACCC 60.517 63.158 15.93 0.00 34.35 4.61
1833 1848 2.033141 TTGAGCAGTCTGGCAGGC 59.967 61.111 12.08 12.08 35.83 4.85
1837 1852 1.633852 CTTCGCTTGAGCAGTCTGGC 61.634 60.000 1.14 0.00 42.21 4.85
1840 1855 1.375268 GGCTTCGCTTGAGCAGTCT 60.375 57.895 3.65 0.00 41.89 3.24
1922 1939 5.677319 TGAAGAAATTGACGGGAGATAGT 57.323 39.130 0.00 0.00 0.00 2.12
1932 1949 8.464404 TCTTGATCCATTCATGAAGAAATTGAC 58.536 33.333 14.54 3.43 40.22 3.18
1943 1960 4.822350 AGTGATGCTCTTGATCCATTCATG 59.178 41.667 0.00 0.00 33.34 3.07
1944 1961 5.050126 AGTGATGCTCTTGATCCATTCAT 57.950 39.130 0.00 0.00 33.34 2.57
1985 2002 0.313672 GAGATGAGCTAGGAGCACGG 59.686 60.000 0.64 0.00 45.56 4.94
1993 2010 6.072286 ACCAACACAAAAATGAGATGAGCTAG 60.072 38.462 0.00 0.00 0.00 3.42
1994 2011 5.769662 ACCAACACAAAAATGAGATGAGCTA 59.230 36.000 0.00 0.00 0.00 3.32
2042 2108 3.070446 CACTGGTGGTTGGAGTTACAGTA 59.930 47.826 0.00 0.00 36.09 2.74
2085 2151 6.763355 ACTCTATGCTTTCTGAAGTCTGAAA 58.237 36.000 11.43 11.43 40.08 2.69
2134 2200 3.588955 TCTTGACGTTGATCCATGAGTG 58.411 45.455 0.00 0.00 0.00 3.51
2164 2230 4.972733 ATGTGTTGGGCAGCGGCA 62.973 61.111 11.88 0.00 43.71 5.69
2181 2247 1.053835 TTGTGTCCTCTGGCTGTGGA 61.054 55.000 10.65 10.65 36.12 4.02
2186 2252 2.736670 AGTTTTTGTGTCCTCTGGCT 57.263 45.000 0.00 0.00 0.00 4.75
2206 2272 5.086058 CGCATCGCTAACTAACAAAATTGT 58.914 37.500 0.00 0.00 44.72 2.71
2207 2273 5.086058 ACGCATCGCTAACTAACAAAATTG 58.914 37.500 0.00 0.00 0.00 2.32
2225 2293 1.460743 CACTGTTTCGATGTGACGCAT 59.539 47.619 0.00 0.00 41.24 4.73
2228 2296 1.139989 AGCACTGTTTCGATGTGACG 58.860 50.000 10.94 0.00 33.95 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.