Multiple sequence alignment - TraesCS2A01G249700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G249700 chr2A 100.000 5964 0 0 1 5964 376087643 376081680 0.000000e+00 11014.0
1 TraesCS2A01G249700 chr2A 89.916 476 37 8 2783 3258 752769791 752770255 2.730000e-168 603.0
2 TraesCS2A01G249700 chr2A 89.062 448 36 9 2820 3267 773723581 773723147 1.680000e-150 544.0
3 TraesCS2A01G249700 chr2A 100.000 264 0 0 6570 6833 376081074 376080811 7.970000e-134 488.0
4 TraesCS2A01G249700 chr2A 96.241 266 8 2 6570 6833 721670306 721670571 1.050000e-117 435.0
5 TraesCS2A01G249700 chr2A 92.453 265 19 1 6570 6833 730138130 730137866 1.800000e-100 377.0
6 TraesCS2A01G249700 chr2A 95.604 91 3 1 5127 5216 593655910 593656000 1.990000e-30 145.0
7 TraesCS2A01G249700 chr2A 91.209 91 8 0 5119 5209 1378612 1378702 2.590000e-24 124.0
8 TraesCS2A01G249700 chr2B 97.166 1694 38 4 4278 5964 371163418 371165108 0.000000e+00 2854.0
9 TraesCS2A01G249700 chr2B 95.041 847 31 6 925 1767 371161488 371162327 0.000000e+00 1321.0
10 TraesCS2A01G249700 chr2B 95.695 604 21 3 3679 4278 371162762 371163364 0.000000e+00 966.0
11 TraesCS2A01G249700 chr2B 91.250 320 12 1 3380 3683 371162315 371162634 8.190000e-114 422.0
12 TraesCS2A01G249700 chr2B 94.444 108 5 1 3249 3355 392615709 392615602 1.520000e-36 165.0
13 TraesCS2A01G249700 chr2B 93.407 91 5 1 5127 5216 529265346 529265436 4.300000e-27 134.0
14 TraesCS2A01G249700 chr2B 100.000 31 0 0 900 930 371161449 371161479 2.660000e-04 58.4
15 TraesCS2A01G249700 chr6D 93.546 1503 85 3 1770 3261 387811160 387809659 0.000000e+00 2228.0
16 TraesCS2A01G249700 chr6D 93.642 755 38 3 1771 2515 304122003 304122757 0.000000e+00 1120.0
17 TraesCS2A01G249700 chr6D 91.353 266 21 2 6570 6833 237383256 237383521 5.040000e-96 363.0
18 TraesCS2A01G249700 chr6D 91.321 265 22 1 6570 6833 365596038 365595774 1.810000e-95 361.0
19 TraesCS2A01G249700 chr6D 91.603 262 20 2 6573 6833 401590881 401590621 1.810000e-95 361.0
20 TraesCS2A01G249700 chr6D 90.943 265 21 3 6570 6833 201144321 201144583 3.030000e-93 353.0
21 TraesCS2A01G249700 chr6D 89.850 266 24 3 6570 6833 20010752 20011016 8.490000e-89 339.0
22 TraesCS2A01G249700 chr6D 89.474 266 26 2 6570 6833 229660072 229659807 1.100000e-87 335.0
23 TraesCS2A01G249700 chr6D 89.474 266 26 2 6570 6833 261334783 261335048 1.100000e-87 335.0
24 TraesCS2A01G249700 chr6D 89.474 266 26 2 6570 6833 298448725 298448990 1.100000e-87 335.0
25 TraesCS2A01G249700 chr6D 89.474 266 25 3 6570 6833 452344158 452343894 3.950000e-87 333.0
26 TraesCS2A01G249700 chr6D 89.098 266 27 2 6570 6833 50183795 50183530 5.110000e-86 329.0
27 TraesCS2A01G249700 chr6D 95.652 115 4 1 3249 3362 387809633 387809519 4.210000e-42 183.0
28 TraesCS2A01G249700 chr7D 92.195 1499 91 2 1770 3258 112157163 112158645 0.000000e+00 2097.0
29 TraesCS2A01G249700 chr7D 85.683 922 109 12 1 900 244756419 244755499 0.000000e+00 950.0
30 TraesCS2A01G249700 chr7D 94.595 111 5 1 3249 3358 112158675 112158785 3.280000e-38 171.0
31 TraesCS2A01G249700 chr7D 87.143 70 9 0 5135 5204 85580288 85580219 5.680000e-11 80.5
32 TraesCS2A01G249700 chr2D 95.907 1295 39 5 4684 5964 299891556 299890262 0.000000e+00 2085.0
33 TraesCS2A01G249700 chr2D 96.437 870 19 6 900 1767 299893933 299893074 0.000000e+00 1424.0
34 TraesCS2A01G249700 chr2D 93.559 916 39 4 3380 4278 299893086 299892174 0.000000e+00 1347.0
35 TraesCS2A01G249700 chr2D 96.822 409 11 2 4278 4686 299892120 299891714 0.000000e+00 682.0
36 TraesCS2A01G249700 chr2D 92.830 265 18 1 6570 6833 350800151 350799887 3.870000e-102 383.0
37 TraesCS2A01G249700 chr2D 92.308 91 6 1 5127 5216 449065582 449065492 2.000000e-25 128.0
38 TraesCS2A01G249700 chr2D 79.769 173 25 7 734 900 399347028 399347196 4.330000e-22 117.0
39 TraesCS2A01G249700 chr5A 92.629 1438 74 6 1770 3195 578083234 578081817 0.000000e+00 2039.0
40 TraesCS2A01G249700 chr5A 87.834 748 81 5 1 738 448290028 448289281 0.000000e+00 869.0
41 TraesCS2A01G249700 chr5A 92.509 267 16 4 6570 6833 556390331 556390596 5.000000e-101 379.0
42 TraesCS2A01G249700 chr5A 98.095 105 2 0 3263 3367 578081824 578081720 4.210000e-42 183.0
43 TraesCS2A01G249700 chr5A 93.023 86 5 1 5126 5211 383880466 383880550 2.590000e-24 124.0
44 TraesCS2A01G249700 chr5A 85.714 91 11 2 811 900 472921080 472920991 2.030000e-15 95.3
45 TraesCS2A01G249700 chrUn 92.668 1432 73 6 1770 3189 259782234 259783645 0.000000e+00 2034.0
46 TraesCS2A01G249700 chrUn 97.143 105 3 0 3263 3367 259783644 259783748 1.960000e-40 178.0
47 TraesCS2A01G249700 chrUn 84.615 91 14 0 810 900 127126618 127126708 2.620000e-14 91.6
48 TraesCS2A01G249700 chrUn 83.529 85 10 3 5127 5210 67093250 67093169 7.350000e-10 76.8
49 TraesCS2A01G249700 chr6B 89.258 1536 111 12 1770 3267 345212376 345210857 0.000000e+00 1873.0
50 TraesCS2A01G249700 chr6B 95.327 107 5 0 3252 3358 545468120 545468226 3.280000e-38 171.0
51 TraesCS2A01G249700 chr7B 88.609 1510 146 8 1770 3267 651407136 651408631 0.000000e+00 1812.0
52 TraesCS2A01G249700 chr1B 92.230 991 66 2 1770 2749 449262813 449263803 0.000000e+00 1393.0
53 TraesCS2A01G249700 chr1B 92.128 686 42 3 1764 2437 169669037 169669722 0.000000e+00 957.0
54 TraesCS2A01G249700 chr1B 92.771 83 6 0 5128 5210 120657925 120657843 3.350000e-23 121.0
55 TraesCS2A01G249700 chr1B 85.714 98 8 4 5115 5210 167109098 167109005 1.570000e-16 99.0
56 TraesCS2A01G249700 chr4D 88.139 1096 106 13 1765 2841 81988705 81989795 0.000000e+00 1282.0
57 TraesCS2A01G249700 chr4D 85.560 928 104 17 1 900 17032894 17031969 0.000000e+00 944.0
58 TraesCS2A01G249700 chr4D 85.419 919 117 9 1 902 115401798 115400880 0.000000e+00 939.0
59 TraesCS2A01G249700 chr4D 92.453 265 19 1 6570 6833 505435550 505435286 1.800000e-100 377.0
60 TraesCS2A01G249700 chr4D 91.321 265 22 1 6570 6833 215446272 215446008 1.810000e-95 361.0
61 TraesCS2A01G249700 chr4D 91.321 265 21 2 6570 6832 354996064 354996328 1.810000e-95 361.0
62 TraesCS2A01G249700 chr4D 92.188 256 18 2 6570 6823 447072127 447072382 1.810000e-95 361.0
63 TraesCS2A01G249700 chr4D 90.977 266 21 3 6570 6833 44623222 44623486 8.430000e-94 355.0
64 TraesCS2A01G249700 chr4D 90.706 269 20 2 6570 6833 440826930 440826662 3.030000e-93 353.0
65 TraesCS2A01G249700 chr4D 100.000 40 0 0 5171 5210 494866702 494866663 2.640000e-09 75.0
66 TraesCS2A01G249700 chr3A 92.554 873 64 1 2395 3267 41174387 41175258 0.000000e+00 1251.0
67 TraesCS2A01G249700 chr3A 93.263 757 40 2 1770 2515 41173720 41174476 0.000000e+00 1105.0
68 TraesCS2A01G249700 chr3A 87.198 992 92 22 2395 3353 32885551 32884562 0.000000e+00 1096.0
69 TraesCS2A01G249700 chr3A 94.048 84 5 0 5127 5210 648860996 648861079 2.000000e-25 128.0
70 TraesCS2A01G249700 chr3A 93.827 81 5 0 5129 5209 203993957 203994037 9.310000e-24 122.0
71 TraesCS2A01G249700 chr3A 89.888 89 8 1 5127 5214 652027538 652027626 5.600000e-21 113.0
72 TraesCS2A01G249700 chr3D 86.642 1093 104 21 1770 2841 10331857 10330786 0.000000e+00 1171.0
73 TraesCS2A01G249700 chr3D 84.962 931 109 12 1 902 427229324 427230252 0.000000e+00 915.0
74 TraesCS2A01G249700 chr3D 92.105 266 19 2 6570 6833 600704958 600705223 2.330000e-99 374.0
75 TraesCS2A01G249700 chr3D 92.395 263 19 1 6572 6833 612665497 612665759 2.330000e-99 374.0
76 TraesCS2A01G249700 chr3D 92.683 82 6 0 5127 5208 516880467 516880548 1.200000e-22 119.0
77 TraesCS2A01G249700 chr3D 91.667 84 7 0 5127 5210 165863515 165863598 4.330000e-22 117.0
78 TraesCS2A01G249700 chr3D 89.412 85 7 2 5127 5210 571120617 571120534 9.370000e-19 106.0
79 TraesCS2A01G249700 chr5D 86.207 928 100 13 1 900 532239558 532238631 0.000000e+00 979.0
80 TraesCS2A01G249700 chr5D 85.868 927 104 12 1 900 341557509 341558435 0.000000e+00 961.0
81 TraesCS2A01G249700 chr5D 92.105 266 18 3 6570 6833 305990029 305990293 8.370000e-99 372.0
82 TraesCS2A01G249700 chr5D 91.729 266 20 2 6570 6833 172357027 172357292 1.080000e-97 368.0
83 TraesCS2A01G249700 chr5D 91.729 266 20 2 6570 6833 355213122 355212857 1.080000e-97 368.0
84 TraesCS2A01G249700 chr5D 91.729 266 19 3 6570 6833 227590028 227589764 3.890000e-97 366.0
85 TraesCS2A01G249700 chr5D 88.235 85 10 0 5127 5211 47332251 47332335 1.210000e-17 102.0
86 TraesCS2A01G249700 chr1D 85.638 933 103 15 1 905 415188334 415189263 0.000000e+00 952.0
87 TraesCS2A01G249700 chr1D 92.105 266 19 2 6570 6833 435924773 435925038 2.330000e-99 374.0
88 TraesCS2A01G249700 chr1D 91.760 267 19 2 6570 6833 57510264 57509998 1.080000e-97 368.0
89 TraesCS2A01G249700 chr1D 90.977 266 22 2 6570 6833 206046527 206046262 2.340000e-94 357.0
90 TraesCS2A01G249700 chr1D 88.660 97 6 4 5115 5210 110052564 110052472 5.600000e-21 113.0
91 TraesCS2A01G249700 chr7A 84.416 924 126 13 1 907 25415828 25414906 0.000000e+00 893.0
92 TraesCS2A01G249700 chr7A 94.361 266 12 3 6570 6833 22331125 22330861 8.250000e-109 405.0
93 TraesCS2A01G249700 chr7A 94.643 112 5 1 3249 3359 548067594 548067483 9.110000e-39 172.0
94 TraesCS2A01G249700 chr7A 93.750 112 6 1 3249 3359 507137771 507137882 4.240000e-37 167.0
95 TraesCS2A01G249700 chr1A 89.509 448 35 8 2820 3267 61347431 61346996 2.150000e-154 556.0
96 TraesCS2A01G249700 chr1A 92.105 266 19 2 6570 6833 449954794 449955059 2.330000e-99 374.0
97 TraesCS2A01G249700 chr1A 91.760 267 19 2 6570 6833 489272052 489271786 1.080000e-97 368.0
98 TraesCS2A01G249700 chr1A 88.636 88 8 1 5126 5213 11897725 11897640 9.370000e-19 106.0
99 TraesCS2A01G249700 chr1A 83.333 96 15 1 5127 5221 490312201 490312106 3.390000e-13 87.9
100 TraesCS2A01G249700 chr1A 97.368 38 0 1 5174 5210 558100787 558100824 5.720000e-06 63.9
101 TraesCS2A01G249700 chr1A 79.762 84 17 0 5127 5210 567969926 567970009 2.060000e-05 62.1
102 TraesCS2A01G249700 chr5B 89.062 448 36 9 2820 3267 661890370 661890804 1.680000e-150 544.0
103 TraesCS2A01G249700 chr6A 92.135 267 18 2 6570 6833 31887483 31887217 2.330000e-99 374.0
104 TraesCS2A01G249700 chr6A 92.105 266 19 2 6570 6833 184173220 184172955 2.330000e-99 374.0
105 TraesCS2A01G249700 chr6A 88.571 70 8 0 5135 5204 500610944 500610875 1.220000e-12 86.1
106 TraesCS2A01G249700 chr6A 82.222 90 16 0 811 900 116231525 116231436 2.040000e-10 78.7
107 TraesCS2A01G249700 chr3B 94.643 112 5 1 3249 3359 357773081 357773192 9.110000e-39 172.0
108 TraesCS2A01G249700 chr3B 93.407 91 6 0 5127 5217 680423381 680423291 1.200000e-27 135.0
109 TraesCS2A01G249700 chr3B 95.181 83 4 0 5129 5211 126580068 126580150 1.550000e-26 132.0
110 TraesCS2A01G249700 chr4B 91.892 74 4 1 5132 5205 89471730 89471801 1.210000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G249700 chr2A 376080811 376087643 6832 True 5751.00 11014 100.00000 1 6833 2 chr2A.!!$R3 6832
1 TraesCS2A01G249700 chr2B 371161449 371165108 3659 False 1124.28 2854 95.83040 900 5964 5 chr2B.!!$F2 5064
2 TraesCS2A01G249700 chr6D 387809519 387811160 1641 True 1205.50 2228 94.59900 1770 3362 2 chr6D.!!$R6 1592
3 TraesCS2A01G249700 chr6D 304122003 304122757 754 False 1120.00 1120 93.64200 1771 2515 1 chr6D.!!$F6 744
4 TraesCS2A01G249700 chr7D 112157163 112158785 1622 False 1134.00 2097 93.39500 1770 3358 2 chr7D.!!$F1 1588
5 TraesCS2A01G249700 chr7D 244755499 244756419 920 True 950.00 950 85.68300 1 900 1 chr7D.!!$R2 899
6 TraesCS2A01G249700 chr2D 299890262 299893933 3671 True 1384.50 2085 95.68125 900 5964 4 chr2D.!!$R3 5064
7 TraesCS2A01G249700 chr5A 578081720 578083234 1514 True 1111.00 2039 95.36200 1770 3367 2 chr5A.!!$R3 1597
8 TraesCS2A01G249700 chr5A 448289281 448290028 747 True 869.00 869 87.83400 1 738 1 chr5A.!!$R1 737
9 TraesCS2A01G249700 chrUn 259782234 259783748 1514 False 1106.00 2034 94.90550 1770 3367 2 chrUn.!!$F2 1597
10 TraesCS2A01G249700 chr6B 345210857 345212376 1519 True 1873.00 1873 89.25800 1770 3267 1 chr6B.!!$R1 1497
11 TraesCS2A01G249700 chr7B 651407136 651408631 1495 False 1812.00 1812 88.60900 1770 3267 1 chr7B.!!$F1 1497
12 TraesCS2A01G249700 chr1B 449262813 449263803 990 False 1393.00 1393 92.23000 1770 2749 1 chr1B.!!$F2 979
13 TraesCS2A01G249700 chr1B 169669037 169669722 685 False 957.00 957 92.12800 1764 2437 1 chr1B.!!$F1 673
14 TraesCS2A01G249700 chr4D 81988705 81989795 1090 False 1282.00 1282 88.13900 1765 2841 1 chr4D.!!$F2 1076
15 TraesCS2A01G249700 chr4D 17031969 17032894 925 True 944.00 944 85.56000 1 900 1 chr4D.!!$R1 899
16 TraesCS2A01G249700 chr4D 115400880 115401798 918 True 939.00 939 85.41900 1 902 1 chr4D.!!$R2 901
17 TraesCS2A01G249700 chr3A 41173720 41175258 1538 False 1178.00 1251 92.90850 1770 3267 2 chr3A.!!$F4 1497
18 TraesCS2A01G249700 chr3A 32884562 32885551 989 True 1096.00 1096 87.19800 2395 3353 1 chr3A.!!$R1 958
19 TraesCS2A01G249700 chr3D 10330786 10331857 1071 True 1171.00 1171 86.64200 1770 2841 1 chr3D.!!$R1 1071
20 TraesCS2A01G249700 chr3D 427229324 427230252 928 False 915.00 915 84.96200 1 902 1 chr3D.!!$F2 901
21 TraesCS2A01G249700 chr5D 532238631 532239558 927 True 979.00 979 86.20700 1 900 1 chr5D.!!$R3 899
22 TraesCS2A01G249700 chr5D 341557509 341558435 926 False 961.00 961 85.86800 1 900 1 chr5D.!!$F4 899
23 TraesCS2A01G249700 chr1D 415188334 415189263 929 False 952.00 952 85.63800 1 905 1 chr1D.!!$F1 904
24 TraesCS2A01G249700 chr7A 25414906 25415828 922 True 893.00 893 84.41600 1 907 1 chr7A.!!$R2 906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 246 0.238553 GGCTTTTCACTGGCGAAGAC 59.761 55.000 0.00 0.00 0.00 3.01 F
841 878 0.316689 CGTTGGACCGACTTTTGTGC 60.317 55.000 10.26 0.00 0.00 4.57 F
2311 2387 0.317479 CCCCAACGAAAGAGACGAGT 59.683 55.000 0.00 0.00 34.70 4.18 F
2950 3124 0.972983 CCCTGGAGCGGAAGAAGAGA 60.973 60.000 0.00 0.00 0.00 3.10 F
3385 3617 1.444553 CTGGGCTTCGTCTCGTGAC 60.445 63.158 7.56 7.56 39.70 3.67 F
4504 5011 1.133823 TGGTCTCACAAACCTGCATGT 60.134 47.619 0.00 0.00 37.69 3.21 F
4878 5545 1.559219 TCGATCTGGCCATCCAAGAAA 59.441 47.619 5.51 0.00 42.91 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1420 1475 0.539051 GAGGCACAGCAGACAGGTAT 59.461 55.000 0.0 0.0 0.00 2.73 R
2372 2451 0.741221 GTCGGTGGATGCCAGTTCTC 60.741 60.000 0.0 0.0 32.34 2.87 R
3752 4150 0.478072 ACAATGGTTGCCACAGAGGA 59.522 50.000 0.0 0.0 41.22 3.71 R
3754 4152 3.346315 TCATACAATGGTTGCCACAGAG 58.654 45.455 0.0 0.0 35.80 3.35 R
5312 5997 3.074412 AGTTTGGTTCTACATCAAGGCG 58.926 45.455 0.0 0.0 0.00 5.52 R
5681 6369 0.727398 CGTTAGTAGCAAAGCCCTGC 59.273 55.000 0.0 0.0 42.97 4.85 R
6807 7495 3.672767 AAGTTATTCTTCACCCGACGT 57.327 42.857 0.0 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 0.905357 CCTCCGAGATCTGGTTTGGT 59.095 55.000 0.00 0.00 0.00 3.67
79 80 3.681897 CGAGATCTGGTTTGGTGAGAAAG 59.318 47.826 0.00 0.00 0.00 2.62
92 93 1.115467 GAGAAAGGCCTCATCCTCGA 58.885 55.000 5.23 0.00 34.82 4.04
164 167 3.700109 CCTCTTGAGGCCTCGTCA 58.300 61.111 27.43 13.16 0.00 4.35
173 177 2.032620 GAGGCCTCGTCAGGAGATAAA 58.967 52.381 19.06 0.00 46.23 1.40
209 213 4.845580 CAGCGGGCGCAGGATCTT 62.846 66.667 10.83 0.00 44.88 2.40
235 239 3.737172 CCCGCGGCTTTTCACTGG 61.737 66.667 22.85 0.00 0.00 4.00
242 246 0.238553 GGCTTTTCACTGGCGAAGAC 59.761 55.000 0.00 0.00 0.00 3.01
251 255 2.355481 GGCGAAGACCGTCGTGTT 60.355 61.111 7.14 0.00 43.06 3.32
254 258 1.007336 GCGAAGACCGTCGTGTTCAT 61.007 55.000 7.14 0.00 41.26 2.57
283 287 0.729478 CAGCGTCGTCTTGTCATCGT 60.729 55.000 0.00 0.00 0.00 3.73
358 366 3.057806 TCGATGAGCGTCAGTTCTACAAA 60.058 43.478 0.00 0.00 41.80 2.83
371 379 5.522460 CAGTTCTACAAACAAAGAAGGACGA 59.478 40.000 0.00 0.00 32.56 4.20
424 432 1.541310 ATCGGGAGGACAAGCGTTCA 61.541 55.000 0.00 0.00 0.00 3.18
434 442 1.069090 AAGCGTTCACGGAAGCAGA 59.931 52.632 0.81 0.00 40.23 4.26
465 473 7.173218 TCAATTGAAACTGAAGCTACGAGAAAT 59.827 33.333 5.45 0.00 0.00 2.17
514 522 3.832490 AGTATGCTGACGCCTATATCCAA 59.168 43.478 0.00 0.00 34.43 3.53
560 568 2.919229 TCGGAATTAGAAAACGACGAGC 59.081 45.455 0.00 0.00 0.00 5.03
561 569 6.488016 GTCGGAATTAGAAAACGACGAGCG 62.488 50.000 0.00 0.00 43.31 5.03
671 687 1.300931 GGCGAGAGTGTGCTGTTGA 60.301 57.895 0.00 0.00 0.00 3.18
683 699 1.699083 TGCTGTTGAATGTGGAGAGGA 59.301 47.619 0.00 0.00 0.00 3.71
731 752 2.214181 GAGGAAAGAGGACGAGCGCA 62.214 60.000 11.47 0.00 0.00 6.09
751 788 2.125991 TCCGCGCCGACGTAATTT 60.126 55.556 0.00 0.00 42.83 1.82
753 790 2.446253 CCGCGCCGACGTAATTTCA 61.446 57.895 0.00 0.00 42.83 2.69
764 801 6.539324 CCGACGTAATTTCAGCTCAAAAATA 58.461 36.000 0.00 0.00 0.00 1.40
818 855 1.807981 CGCGCGTCTATTTGGGTCA 60.808 57.895 24.19 0.00 0.00 4.02
828 865 3.647709 TATTTGGGTCAGCGCGTTGGA 62.648 52.381 22.99 7.75 0.00 3.53
841 878 0.316689 CGTTGGACCGACTTTTGTGC 60.317 55.000 10.26 0.00 0.00 4.57
861 898 2.736682 CGCGCGGACCCAAACTAAG 61.737 63.158 24.84 0.00 0.00 2.18
869 906 2.046700 CCAAACTAAGGGCGGCGA 60.047 61.111 12.98 0.00 0.00 5.54
953 1006 4.840716 AAGAGAGACTTCATTGCTCCAT 57.159 40.909 0.00 0.00 32.91 3.41
954 1007 4.405116 AGAGAGACTTCATTGCTCCATC 57.595 45.455 0.00 0.00 0.00 3.51
955 1008 3.134442 AGAGAGACTTCATTGCTCCATCC 59.866 47.826 0.00 0.00 0.00 3.51
956 1009 2.842496 AGAGACTTCATTGCTCCATCCA 59.158 45.455 0.00 0.00 0.00 3.41
1062 1115 4.299485 CTCCTCTCACCTTTACCCCTAAT 58.701 47.826 0.00 0.00 0.00 1.73
1064 1117 5.857134 TCCTCTCACCTTTACCCCTAATAA 58.143 41.667 0.00 0.00 0.00 1.40
1070 1123 8.671409 TCTCACCTTTACCCCTAATAAAAGAAA 58.329 33.333 0.00 0.00 31.96 2.52
1071 1124 9.475620 CTCACCTTTACCCCTAATAAAAGAAAT 57.524 33.333 0.00 0.00 31.96 2.17
1152 1206 0.839946 ACCCAAACTGACTGCTCACT 59.160 50.000 0.00 0.00 0.00 3.41
1258 1313 5.172934 CCGTAACACCTTAAAGCTGACATA 58.827 41.667 0.00 0.00 0.00 2.29
1308 1363 1.610038 CCTTTTGTGTCATGCTGCTGA 59.390 47.619 0.00 0.00 0.00 4.26
1420 1475 2.863740 GTCGACCGCATCATTGTATGAA 59.136 45.455 3.51 0.00 43.50 2.57
1463 1519 1.808411 TTGTTCTGCTCCGGTTGATC 58.192 50.000 0.00 0.00 0.00 2.92
1469 1525 0.532573 TGCTCCGGTTGATCTGTCTC 59.467 55.000 0.00 0.00 0.00 3.36
1586 1642 2.579657 CCGATGGTATGCCCGGCTA 61.580 63.158 11.61 0.00 33.91 3.93
1587 1643 1.596934 CGATGGTATGCCCGGCTAT 59.403 57.895 11.61 5.33 35.15 2.97
1595 1651 1.755179 ATGCCCGGCTATTATGATGC 58.245 50.000 11.61 0.00 0.00 3.91
1618 1674 2.742428 ATATTGGCTGACTGGTGCAT 57.258 45.000 0.00 0.00 0.00 3.96
1763 1819 1.138069 TCTTGCTTTGGTCGTGACTGA 59.862 47.619 0.00 0.00 0.00 3.41
1764 1820 2.146342 CTTGCTTTGGTCGTGACTGAT 58.854 47.619 0.00 0.00 0.00 2.90
1765 1821 2.254546 TGCTTTGGTCGTGACTGATT 57.745 45.000 0.00 0.00 0.00 2.57
1766 1822 2.571212 TGCTTTGGTCGTGACTGATTT 58.429 42.857 0.00 0.00 0.00 2.17
1767 1823 2.548057 TGCTTTGGTCGTGACTGATTTC 59.452 45.455 0.00 0.00 0.00 2.17
1768 1824 2.548057 GCTTTGGTCGTGACTGATTTCA 59.452 45.455 0.00 0.00 0.00 2.69
1784 1840 5.673514 TGATTTCAGAAAAAGGCTTTTGCT 58.326 33.333 24.60 24.60 46.54 3.91
1833 1895 5.827797 CACCAAGCACCCAGTACAAATATAT 59.172 40.000 0.00 0.00 0.00 0.86
2074 2150 5.073311 CTTCAAGAAGGGAACGATCTACA 57.927 43.478 1.86 0.00 34.87 2.74
2080 2156 0.535335 GGGAACGATCTACACTGCCA 59.465 55.000 0.00 0.00 0.00 4.92
2311 2387 0.317479 CCCCAACGAAAGAGACGAGT 59.683 55.000 0.00 0.00 34.70 4.18
2934 3107 4.202030 ACACCACCACCTCCCCCT 62.202 66.667 0.00 0.00 0.00 4.79
2950 3124 0.972983 CCCTGGAGCGGAAGAAGAGA 60.973 60.000 0.00 0.00 0.00 3.10
2962 3136 1.578897 AGAAGAGAAGAGGAAGGCCC 58.421 55.000 0.00 0.00 33.31 5.80
3381 3613 2.262915 AAGCTGGGCTTCGTCTCG 59.737 61.111 0.00 0.00 46.77 4.04
3382 3614 2.574955 AAGCTGGGCTTCGTCTCGT 61.575 57.895 0.00 0.00 46.77 4.18
3383 3615 2.771763 AAGCTGGGCTTCGTCTCGTG 62.772 60.000 0.00 0.00 46.77 4.35
3384 3616 2.962569 CTGGGCTTCGTCTCGTGA 59.037 61.111 0.00 0.00 0.00 4.35
3385 3617 1.444553 CTGGGCTTCGTCTCGTGAC 60.445 63.158 7.56 7.56 39.70 3.67
3386 3618 1.867919 CTGGGCTTCGTCTCGTGACT 61.868 60.000 15.02 0.00 40.86 3.41
3387 3619 1.444553 GGGCTTCGTCTCGTGACTG 60.445 63.158 15.02 9.04 40.86 3.51
3604 3836 3.502191 TGAACTGCACAACAAAAGGAC 57.498 42.857 0.00 0.00 0.00 3.85
3625 3857 3.899980 ACAGGCATATGCTCTAGTGATGA 59.100 43.478 26.12 0.00 41.70 2.92
3689 4084 7.826252 TGAGAATCTTGTCAATTAGGAAAGGAG 59.174 37.037 0.00 0.00 34.92 3.69
3722 4117 8.843262 TCATTCATTGCTTACTGAAATATGGAG 58.157 33.333 0.00 0.00 35.20 3.86
3726 4124 6.624352 TTGCTTACTGAAATATGGAGCATC 57.376 37.500 0.00 0.00 38.32 3.91
3752 4150 9.060347 CATTAAGTATCCTTATGTGCTGATGTT 57.940 33.333 0.00 0.00 33.27 2.71
3754 4152 5.615289 AGTATCCTTATGTGCTGATGTTCC 58.385 41.667 0.00 0.00 0.00 3.62
4120 4519 7.156876 ACTCGGCATTTTCTGAATGATTTTA 57.843 32.000 3.12 0.00 0.00 1.52
4121 4520 7.601856 ACTCGGCATTTTCTGAATGATTTTAA 58.398 30.769 3.12 0.00 0.00 1.52
4203 4602 4.111016 CATGCGTGCTGCTGGTGG 62.111 66.667 0.00 0.00 46.63 4.61
4207 4606 2.267006 CGTGCTGCTGGTGGAGAT 59.733 61.111 0.00 0.00 33.10 2.75
4226 4625 7.492669 GTGGAGATTTCTCTGAAATCGTATCAA 59.507 37.037 20.37 9.27 42.48 2.57
4504 5011 1.133823 TGGTCTCACAAACCTGCATGT 60.134 47.619 0.00 0.00 37.69 3.21
4579 5086 5.716703 AGTGGCAAAAGCTATTTAGATTGGT 59.283 36.000 0.00 0.00 31.47 3.67
4878 5545 1.559219 TCGATCTGGCCATCCAAGAAA 59.441 47.619 5.51 0.00 42.91 2.52
4955 5622 2.496899 AGGTATGTGGAAGCAGTTGG 57.503 50.000 0.00 0.00 0.00 3.77
5023 5701 8.687824 AGTTTCAACTTTGTATGTCAAGTTTG 57.312 30.769 0.00 0.00 35.21 2.93
5102 5780 6.763355 TCTGAAGTAGATCAATCCTTATGCC 58.237 40.000 0.00 0.00 0.00 4.40
5312 5997 4.273235 AGCAAATTGTTTGTTTAGCCTTGC 59.727 37.500 4.56 0.00 42.56 4.01
5681 6369 6.920569 ATGGCTAGGTTTTCTTATGTTACG 57.079 37.500 0.00 0.00 0.00 3.18
5685 6373 5.220605 GCTAGGTTTTCTTATGTTACGCAGG 60.221 44.000 0.00 0.00 0.00 4.85
5772 6460 3.204526 GCTCTTCTTCCCTCATGACATG 58.795 50.000 9.28 9.28 0.00 3.21
5887 6575 2.774439 TTGCTTGCTCTTCGGTTTTC 57.226 45.000 0.00 0.00 0.00 2.29
6596 7284 9.925268 TGTCTTATTTCAAACGTAAAAAGAGAC 57.075 29.630 18.08 18.08 34.43 3.36
6597 7285 9.925268 GTCTTATTTCAAACGTAAAAAGAGACA 57.075 29.630 18.95 0.00 34.24 3.41
6599 7287 9.931210 CTTATTTCAAACGTAAAAAGAGACAGT 57.069 29.630 0.00 0.00 0.00 3.55
6602 7290 9.931210 ATTTCAAACGTAAAAAGAGACAGTAAG 57.069 29.630 0.00 0.00 0.00 2.34
6603 7291 8.706492 TTCAAACGTAAAAAGAGACAGTAAGA 57.294 30.769 0.00 0.00 0.00 2.10
6604 7292 8.706492 TCAAACGTAAAAAGAGACAGTAAGAA 57.294 30.769 0.00 0.00 0.00 2.52
6605 7293 9.153721 TCAAACGTAAAAAGAGACAGTAAGAAA 57.846 29.630 0.00 0.00 0.00 2.52
6606 7294 9.763465 CAAACGTAAAAAGAGACAGTAAGAAAA 57.237 29.630 0.00 0.00 0.00 2.29
6744 7432 9.745880 TTTTTATGCCAAATTTTACGTAGTGAA 57.254 25.926 0.00 0.00 45.73 3.18
6745 7433 9.915629 TTTTATGCCAAATTTTACGTAGTGAAT 57.084 25.926 0.00 0.00 45.73 2.57
6746 7434 9.562583 TTTATGCCAAATTTTACGTAGTGAATC 57.437 29.630 0.00 0.00 45.73 2.52
6747 7435 6.561737 TGCCAAATTTTACGTAGTGAATCA 57.438 33.333 0.00 0.00 45.73 2.57
6748 7436 6.971602 TGCCAAATTTTACGTAGTGAATCAA 58.028 32.000 0.00 0.00 45.73 2.57
6749 7437 7.598278 TGCCAAATTTTACGTAGTGAATCAAT 58.402 30.769 0.00 0.00 45.73 2.57
6750 7438 8.731605 TGCCAAATTTTACGTAGTGAATCAATA 58.268 29.630 0.00 0.00 45.73 1.90
6751 7439 9.730420 GCCAAATTTTACGTAGTGAATCAATAT 57.270 29.630 0.00 0.00 45.73 1.28
6761 7449 9.817809 ACGTAGTGAATCAATATGAATGTAACT 57.182 29.630 15.66 0.00 42.51 2.24
6821 7509 5.844301 GTAAAATTACGTCGGGTGAAGAA 57.156 39.130 0.00 0.00 0.00 2.52
6822 7510 6.413018 GTAAAATTACGTCGGGTGAAGAAT 57.587 37.500 0.00 0.00 0.00 2.40
6823 7511 7.524294 GTAAAATTACGTCGGGTGAAGAATA 57.476 36.000 0.00 0.00 0.00 1.75
6824 7512 7.962917 GTAAAATTACGTCGGGTGAAGAATAA 58.037 34.615 0.00 0.00 0.00 1.40
6825 7513 6.413018 AAATTACGTCGGGTGAAGAATAAC 57.587 37.500 0.00 0.00 0.00 1.89
6826 7514 4.789012 TTACGTCGGGTGAAGAATAACT 57.211 40.909 0.00 0.00 0.00 2.24
6827 7515 3.672767 ACGTCGGGTGAAGAATAACTT 57.327 42.857 0.00 0.00 42.03 2.66
6828 7516 4.789012 ACGTCGGGTGAAGAATAACTTA 57.211 40.909 0.00 0.00 39.13 2.24
6829 7517 5.334724 ACGTCGGGTGAAGAATAACTTAT 57.665 39.130 0.00 0.00 39.13 1.73
6830 7518 5.727434 ACGTCGGGTGAAGAATAACTTATT 58.273 37.500 0.00 0.00 39.13 1.40
6831 7519 5.809051 ACGTCGGGTGAAGAATAACTTATTC 59.191 40.000 12.07 12.07 43.77 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 0.826715 CGAGGATGAGGCCTTTCTCA 59.173 55.000 6.77 0.00 46.32 3.27
79 80 1.617947 AAGGTGTCGAGGATGAGGCC 61.618 60.000 0.00 0.00 0.00 5.19
92 93 2.356313 CTGCGCTGTCGAAGGTGT 60.356 61.111 9.73 0.00 37.72 4.16
164 167 4.828829 ACACGTCGGAAAATTTATCTCCT 58.171 39.130 5.97 0.00 0.00 3.69
235 239 1.007336 ATGAACACGACGGTCTTCGC 61.007 55.000 6.57 0.00 43.06 4.70
239 243 1.211969 CCGATGAACACGACGGTCT 59.788 57.895 6.57 0.00 40.42 3.85
242 246 1.516386 CCTCCGATGAACACGACGG 60.516 63.158 0.00 0.00 45.61 4.79
283 287 1.511305 GCTTCCACGTCCATCTCGA 59.489 57.895 0.00 0.00 0.00 4.04
358 366 2.326428 TCCCTCTTCGTCCTTCTTTGT 58.674 47.619 0.00 0.00 0.00 2.83
371 379 0.973496 GTCCTCCTCGCTTCCCTCTT 60.973 60.000 0.00 0.00 0.00 2.85
434 442 3.632145 AGCTTCAGTTTCAATTGAACGGT 59.368 39.130 20.35 5.42 32.28 4.83
465 473 1.152419 TCGAAGTCCCACCCTGACA 60.152 57.895 0.00 0.00 35.15 3.58
511 519 1.080025 GTCCTCCTCCGACGTTTGG 60.080 63.158 1.53 1.53 0.00 3.28
514 522 1.475682 GTAATGTCCTCCTCCGACGTT 59.524 52.381 0.00 0.00 41.28 3.99
632 648 2.107750 CTGCCTCATCGCCGATGT 59.892 61.111 24.89 0.00 40.55 3.06
652 668 1.301244 CAACAGCACACTCTCGCCT 60.301 57.895 0.00 0.00 0.00 5.52
659 675 2.158769 TCTCCACATTCAACAGCACACT 60.159 45.455 0.00 0.00 0.00 3.55
671 687 2.440409 GCACATTGTCCTCTCCACATT 58.560 47.619 0.00 0.00 0.00 2.71
683 699 1.600636 CTGGTCGGTGGCACATTGT 60.601 57.895 20.82 0.00 44.52 2.71
710 731 0.528470 CGCTCGTCCTCTTTCCTCTT 59.472 55.000 0.00 0.00 0.00 2.85
711 732 1.939769 GCGCTCGTCCTCTTTCCTCT 61.940 60.000 0.00 0.00 0.00 3.69
764 801 0.618458 TGCCGACCCATTTCTAGCTT 59.382 50.000 0.00 0.00 0.00 3.74
768 805 0.174845 CGTCTGCCGACCCATTTCTA 59.825 55.000 2.40 0.00 39.56 2.10
809 846 2.625823 CCAACGCGCTGACCCAAAT 61.626 57.895 11.83 0.00 0.00 2.32
818 855 3.802418 AAAGTCGGTCCAACGCGCT 62.802 57.895 5.73 0.00 0.00 5.92
828 865 3.284449 GCGGGCACAAAAGTCGGT 61.284 61.111 0.00 0.00 0.00 4.69
848 885 1.378119 CCGCCCTTAGTTTGGGTCC 60.378 63.158 0.00 0.00 46.22 4.46
858 895 1.078988 ATTTCGTTCGCCGCCCTTA 60.079 52.632 0.00 0.00 36.19 2.69
861 898 4.174129 CCATTTCGTTCGCCGCCC 62.174 66.667 0.00 0.00 36.19 6.13
1062 1115 8.541899 AAGGGTGGTTTTAGTGATTTCTTTTA 57.458 30.769 0.00 0.00 0.00 1.52
1064 1117 7.272244 CAAAGGGTGGTTTTAGTGATTTCTTT 58.728 34.615 0.00 0.00 0.00 2.52
1070 1123 3.826729 GAGCAAAGGGTGGTTTTAGTGAT 59.173 43.478 0.00 0.00 38.34 3.06
1071 1124 3.117663 AGAGCAAAGGGTGGTTTTAGTGA 60.118 43.478 0.00 0.00 38.34 3.41
1152 1206 3.139397 GGGGTAGAAGATCAGAGGAGAGA 59.861 52.174 0.00 0.00 0.00 3.10
1258 1313 8.062065 TCAGTAACTCACCAAGAACAAAAATT 57.938 30.769 0.00 0.00 0.00 1.82
1308 1363 3.026694 GCCCTTAAACATGCCATCTTCT 58.973 45.455 0.00 0.00 0.00 2.85
1420 1475 0.539051 GAGGCACAGCAGACAGGTAT 59.461 55.000 0.00 0.00 0.00 2.73
1463 1519 7.505646 GCTTATAGCATACGAAATTGAGACAG 58.494 38.462 0.00 0.00 41.89 3.51
1586 1642 7.336176 CAGTCAGCCAATATACAGCATCATAAT 59.664 37.037 0.00 0.00 0.00 1.28
1587 1643 6.652062 CAGTCAGCCAATATACAGCATCATAA 59.348 38.462 0.00 0.00 0.00 1.90
1595 1651 2.874701 GCACCAGTCAGCCAATATACAG 59.125 50.000 0.00 0.00 0.00 2.74
1618 1674 2.288334 GCATTCCATCAAACACTGTGCA 60.288 45.455 7.90 0.00 0.00 4.57
1763 1819 5.059161 GGAGCAAAAGCCTTTTTCTGAAAT 58.941 37.500 6.81 0.00 34.34 2.17
1764 1820 4.441792 GGAGCAAAAGCCTTTTTCTGAAA 58.558 39.130 6.81 0.00 34.34 2.69
1765 1821 3.490761 CGGAGCAAAAGCCTTTTTCTGAA 60.491 43.478 6.81 0.00 34.34 3.02
1766 1822 2.034558 CGGAGCAAAAGCCTTTTTCTGA 59.965 45.455 6.81 0.00 34.34 3.27
1767 1823 2.397549 CGGAGCAAAAGCCTTTTTCTG 58.602 47.619 6.81 1.89 34.34 3.02
1768 1824 2.800881 CGGAGCAAAAGCCTTTTTCT 57.199 45.000 1.60 1.60 34.34 2.52
1805 1862 2.843730 TGTACTGGGTGCTTGGTGATAT 59.156 45.455 0.00 0.00 0.00 1.63
1806 1863 2.261729 TGTACTGGGTGCTTGGTGATA 58.738 47.619 0.00 0.00 0.00 2.15
1898 1964 1.816835 CTTCGTGGTGGTAGTGCTAGA 59.183 52.381 0.00 0.00 0.00 2.43
2091 2167 5.561679 AGGTGAAAACCTGTTCTATCTTCC 58.438 41.667 0.00 0.00 38.98 3.46
2285 2361 2.124236 TTTCGTTGGGGTTGCGGT 60.124 55.556 0.00 0.00 0.00 5.68
2372 2451 0.741221 GTCGGTGGATGCCAGTTCTC 60.741 60.000 0.00 0.00 32.34 2.87
2786 2959 3.147595 TGCGTGCCTAGCGGATCT 61.148 61.111 0.00 0.00 37.44 2.75
2863 3036 2.629656 CCAAAGCTGACCTTGCGGG 61.630 63.158 0.00 0.00 41.89 6.13
2934 3107 1.821753 CTCTTCTCTTCTTCCGCTCCA 59.178 52.381 0.00 0.00 0.00 3.86
2940 3114 2.093181 GGCCTTCCTCTTCTCTTCTTCC 60.093 54.545 0.00 0.00 0.00 3.46
3367 3599 1.444553 GTCACGAGACGAAGCCCAG 60.445 63.158 0.00 0.00 34.60 4.45
3368 3600 2.649034 GTCACGAGACGAAGCCCA 59.351 61.111 0.00 0.00 34.60 5.36
3376 3608 3.040147 TCCCAAAATCAGTCACGAGAC 57.960 47.619 4.68 4.68 45.31 3.36
3377 3609 3.599343 CATCCCAAAATCAGTCACGAGA 58.401 45.455 0.00 0.00 0.00 4.04
3378 3610 2.679837 CCATCCCAAAATCAGTCACGAG 59.320 50.000 0.00 0.00 0.00 4.18
3379 3611 2.304470 TCCATCCCAAAATCAGTCACGA 59.696 45.455 0.00 0.00 0.00 4.35
3380 3612 2.710377 TCCATCCCAAAATCAGTCACG 58.290 47.619 0.00 0.00 0.00 4.35
3381 3613 5.829924 ACATATCCATCCCAAAATCAGTCAC 59.170 40.000 0.00 0.00 0.00 3.67
3382 3614 5.829391 CACATATCCATCCCAAAATCAGTCA 59.171 40.000 0.00 0.00 0.00 3.41
3383 3615 5.278660 GCACATATCCATCCCAAAATCAGTC 60.279 44.000 0.00 0.00 0.00 3.51
3384 3616 4.586001 GCACATATCCATCCCAAAATCAGT 59.414 41.667 0.00 0.00 0.00 3.41
3385 3617 4.585581 TGCACATATCCATCCCAAAATCAG 59.414 41.667 0.00 0.00 0.00 2.90
3386 3618 4.544683 TGCACATATCCATCCCAAAATCA 58.455 39.130 0.00 0.00 0.00 2.57
3387 3619 5.733620 ATGCACATATCCATCCCAAAATC 57.266 39.130 0.00 0.00 0.00 2.17
3604 3836 4.532314 TCATCACTAGAGCATATGCCTG 57.468 45.455 23.96 13.49 43.38 4.85
3625 3857 7.724305 TGTAAGCAAAGATTACGAGAAAGTT 57.276 32.000 0.00 0.00 37.24 2.66
3689 4084 3.445096 AGTAAGCAATGAATGAGTTGGGC 59.555 43.478 0.00 0.00 0.00 5.36
3752 4150 0.478072 ACAATGGTTGCCACAGAGGA 59.522 50.000 0.00 0.00 41.22 3.71
3754 4152 3.346315 TCATACAATGGTTGCCACAGAG 58.654 45.455 0.00 0.00 35.80 3.35
4157 4556 6.485648 AGAAACATCGGTAGTTTTACTGCTTT 59.514 34.615 0.00 0.00 39.15 3.51
4579 5086 6.165577 GCTTTCCATCAGAAAAGCCATTAAA 58.834 36.000 8.29 0.00 43.84 1.52
4878 5545 8.847196 GTTAAACCAGGTTCATACTTCTCTTTT 58.153 33.333 4.93 0.00 0.00 2.27
5000 5678 7.319646 AGCAAACTTGACATACAAAGTTGAAA 58.680 30.769 1.86 0.00 38.08 2.69
5023 5701 4.660789 AATAATCATTCCAGGTGCAAGC 57.339 40.909 0.00 0.00 0.00 4.01
5312 5997 3.074412 AGTTTGGTTCTACATCAAGGCG 58.926 45.455 0.00 0.00 0.00 5.52
5396 6081 4.929211 CCACGAACAGTTGATTACAGATCA 59.071 41.667 0.00 0.00 0.00 2.92
5506 6194 5.437060 GGACTTGCCTGTAATGGAGAAATA 58.563 41.667 0.00 0.00 0.00 1.40
5681 6369 0.727398 CGTTAGTAGCAAAGCCCTGC 59.273 55.000 0.00 0.00 42.97 4.85
5685 6373 4.507021 GGAGATAACGTTAGTAGCAAAGCC 59.493 45.833 14.25 1.74 0.00 4.35
5887 6575 9.342308 ACACCATAAATATTTCATAGACACCAG 57.658 33.333 3.39 0.00 0.00 4.00
5930 6618 8.291740 GCCATTTTCAAATTGAAGCTTGTAAAT 58.708 29.630 2.10 0.00 37.70 1.40
5933 6621 6.286758 TGCCATTTTCAAATTGAAGCTTGTA 58.713 32.000 2.10 0.00 37.70 2.41
6570 7258 9.925268 GTCTCTTTTTACGTTTGAAATAAGACA 57.075 29.630 17.41 3.19 32.56 3.41
6571 7259 9.925268 TGTCTCTTTTTACGTTTGAAATAAGAC 57.075 29.630 0.00 9.42 32.73 3.01
6573 7261 9.931210 ACTGTCTCTTTTTACGTTTGAAATAAG 57.069 29.630 0.00 0.00 0.00 1.73
6576 7264 9.931210 CTTACTGTCTCTTTTTACGTTTGAAAT 57.069 29.630 0.00 0.00 0.00 2.17
6577 7265 9.153721 TCTTACTGTCTCTTTTTACGTTTGAAA 57.846 29.630 0.00 0.00 0.00 2.69
6578 7266 8.706492 TCTTACTGTCTCTTTTTACGTTTGAA 57.294 30.769 0.00 0.00 0.00 2.69
6579 7267 8.706492 TTCTTACTGTCTCTTTTTACGTTTGA 57.294 30.769 0.00 0.00 0.00 2.69
6580 7268 9.763465 TTTTCTTACTGTCTCTTTTTACGTTTG 57.237 29.630 0.00 0.00 0.00 2.93
6718 7406 9.745880 TTCACTACGTAAAATTTGGCATAAAAA 57.254 25.926 0.00 0.00 0.00 1.94
6719 7407 9.915629 ATTCACTACGTAAAATTTGGCATAAAA 57.084 25.926 0.00 0.00 0.00 1.52
6720 7408 9.562583 GATTCACTACGTAAAATTTGGCATAAA 57.437 29.630 0.00 0.00 0.00 1.40
6721 7409 8.731605 TGATTCACTACGTAAAATTTGGCATAA 58.268 29.630 0.00 0.00 0.00 1.90
6722 7410 8.270080 TGATTCACTACGTAAAATTTGGCATA 57.730 30.769 0.00 0.00 0.00 3.14
6723 7411 7.151999 TGATTCACTACGTAAAATTTGGCAT 57.848 32.000 0.00 0.00 0.00 4.40
6724 7412 6.561737 TGATTCACTACGTAAAATTTGGCA 57.438 33.333 0.00 0.00 0.00 4.92
6725 7413 9.730420 ATATTGATTCACTACGTAAAATTTGGC 57.270 29.630 0.00 0.00 0.00 4.52
6735 7423 9.817809 AGTTACATTCATATTGATTCACTACGT 57.182 29.630 0.00 0.00 0.00 3.57
6799 7487 5.844301 TTCTTCACCCGACGTAATTTTAC 57.156 39.130 0.00 0.00 0.00 2.01
6800 7488 7.818930 AGTTATTCTTCACCCGACGTAATTTTA 59.181 33.333 0.00 0.00 0.00 1.52
6801 7489 6.652062 AGTTATTCTTCACCCGACGTAATTTT 59.348 34.615 0.00 0.00 0.00 1.82
6802 7490 6.168389 AGTTATTCTTCACCCGACGTAATTT 58.832 36.000 0.00 0.00 0.00 1.82
6803 7491 5.727434 AGTTATTCTTCACCCGACGTAATT 58.273 37.500 0.00 0.00 0.00 1.40
6804 7492 5.334724 AGTTATTCTTCACCCGACGTAAT 57.665 39.130 0.00 0.00 0.00 1.89
6805 7493 4.789012 AGTTATTCTTCACCCGACGTAA 57.211 40.909 0.00 0.00 0.00 3.18
6806 7494 4.789012 AAGTTATTCTTCACCCGACGTA 57.211 40.909 0.00 0.00 0.00 3.57
6807 7495 3.672767 AAGTTATTCTTCACCCGACGT 57.327 42.857 0.00 0.00 0.00 4.34
6808 7496 6.270096 GAATAAGTTATTCTTCACCCGACG 57.730 41.667 22.93 0.00 41.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.