Multiple sequence alignment - TraesCS2A01G249000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G249000 chr2A 100.000 2813 0 0 1 2813 373422196 373419384 0.000000e+00 5195
1 TraesCS2A01G249000 chr2A 82.105 475 34 19 2350 2813 413339526 413339960 2.660000e-95 359
2 TraesCS2A01G249000 chr2D 96.125 1471 41 4 872 2339 299371157 299369700 0.000000e+00 2386
3 TraesCS2A01G249000 chr2D 89.842 886 73 12 1 875 299372003 299371124 0.000000e+00 1122
4 TraesCS2A01G249000 chr2D 78.719 484 46 33 2347 2808 621141086 621141534 1.280000e-68 270
5 TraesCS2A01G249000 chr2D 81.024 332 31 21 2347 2661 621310271 621310587 4.680000e-58 235
6 TraesCS2A01G249000 chr2D 85.990 207 24 4 8 214 202626101 202625900 1.700000e-52 217
7 TraesCS2A01G249000 chr2B 96.359 1181 27 5 869 2042 355885338 355886509 0.000000e+00 1929
8 TraesCS2A01G249000 chr2B 89.308 636 51 9 1 626 355881926 355882554 0.000000e+00 782
9 TraesCS2A01G249000 chr2B 90.635 299 15 7 2042 2339 355929672 355929958 4.400000e-103 385
10 TraesCS2A01G249000 chr2B 92.713 247 17 1 630 875 355885128 355885374 3.450000e-94 355
11 TraesCS2A01G249000 chr2B 85.644 202 24 4 10 210 369467773 369467970 1.020000e-49 207
12 TraesCS2A01G249000 chr2B 84.762 210 24 5 1 210 519214351 519214150 1.320000e-48 204
13 TraesCS2A01G249000 chr3D 86.173 405 47 7 2350 2750 382310997 382311396 2.000000e-116 429
14 TraesCS2A01G249000 chr3D 86.765 204 24 1 8 211 82400812 82400612 1.010000e-54 224
15 TraesCS2A01G249000 chr3D 92.174 115 7 2 2350 2462 547500478 547500364 8.060000e-36 161
16 TraesCS2A01G249000 chr4D 78.306 484 44 38 2350 2808 477502788 477503235 3.600000e-64 255
17 TraesCS2A01G249000 chr4A 77.273 484 51 35 2350 2808 630751240 630750791 2.180000e-56 230
18 TraesCS2A01G249000 chr1A 76.844 488 52 34 2346 2808 388184876 388184425 4.720000e-53 219
19 TraesCS2A01G249000 chr3A 77.561 410 59 25 2349 2751 154734667 154735050 1.700000e-52 217
20 TraesCS2A01G249000 chr1B 85.714 210 25 1 1 210 181212540 181212744 1.700000e-52 217
21 TraesCS2A01G249000 chr1B 85.854 205 24 4 8 212 484589273 484589472 2.200000e-51 213
22 TraesCS2A01G249000 chr5A 76.321 473 54 35 2354 2806 266991371 266990937 1.710000e-47 200
23 TraesCS2A01G249000 chr5D 82.553 235 32 6 1 232 51865059 51865287 6.150000e-47 198
24 TraesCS2A01G249000 chr7A 81.818 187 25 8 2350 2531 36523933 36523751 6.280000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G249000 chr2A 373419384 373422196 2812 True 5195 5195 100.000000 1 2813 1 chr2A.!!$R1 2812
1 TraesCS2A01G249000 chr2D 299369700 299372003 2303 True 1754 2386 92.983500 1 2339 2 chr2D.!!$R2 2338
2 TraesCS2A01G249000 chr2B 355881926 355886509 4583 False 1022 1929 92.793333 1 2042 3 chr2B.!!$F3 2041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 543 0.538516 TGGTGTCCCGGGTTTTCATG 60.539 55.0 22.86 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2512 5102 0.03438 ACGAGATGAGGAACGGAGGA 60.034 55.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.695242 TGGACTTCGCTTGGTAGGAAA 59.305 47.619 0.00 0.00 0.00 3.13
46 47 4.379499 GGACTTCGCTTGGTAGGAAATTTG 60.379 45.833 0.00 0.00 0.00 2.32
66 67 6.801539 TTTGTGTAAAACCAAAAACATGCA 57.198 29.167 0.00 0.00 0.00 3.96
67 68 6.801539 TTGTGTAAAACCAAAAACATGCAA 57.198 29.167 0.00 0.00 0.00 4.08
221 222 7.496346 TGGAGACATATCAACCTTCTACTTT 57.504 36.000 0.00 0.00 33.40 2.66
253 254 3.006859 TCATAGGTATCTTGGGATGCACG 59.993 47.826 0.00 0.00 36.49 5.34
257 258 1.139058 GTATCTTGGGATGCACGTCCT 59.861 52.381 8.74 0.00 38.38 3.85
308 309 1.578206 GGACAGGAAGAAAGCACGCC 61.578 60.000 0.00 0.00 0.00 5.68
339 340 3.393970 CAGAGGCGGAGGGAAGCA 61.394 66.667 0.00 0.00 34.54 3.91
406 412 3.083997 GGGAGATGGCACCGAGGT 61.084 66.667 0.00 0.00 0.00 3.85
458 465 2.317609 ACGAGATGTGCACGTTGGC 61.318 57.895 13.92 0.06 40.97 4.52
478 489 3.614092 GCATGGTTCAGGAGAGATTTGA 58.386 45.455 0.00 0.00 0.00 2.69
532 543 0.538516 TGGTGTCCCGGGTTTTCATG 60.539 55.000 22.86 0.00 0.00 3.07
605 616 3.879295 CCCCTAACATATTGCAGACTGTG 59.121 47.826 3.99 0.00 0.00 3.66
643 3224 2.438021 GTGGACATAGATAGGTTGGCCA 59.562 50.000 0.00 0.00 46.31 5.36
669 3250 1.267121 TAGAGACCCAACTGCACCTC 58.733 55.000 0.00 0.00 0.00 3.85
670 3251 1.374758 GAGACCCAACTGCACCTCG 60.375 63.158 0.00 0.00 0.00 4.63
690 3271 2.165998 GTAGTACGTGAGGGGAGTTGT 58.834 52.381 0.00 0.00 0.00 3.32
720 3301 2.764128 GCGGGAGAGGTGGATGGA 60.764 66.667 0.00 0.00 0.00 3.41
839 3421 4.342352 GGTTAAAAGCGACTCCAATCAG 57.658 45.455 0.00 0.00 0.00 2.90
875 3457 3.837731 CCCTCTTTCTCAGTTTCTCCTCT 59.162 47.826 0.00 0.00 0.00 3.69
876 3458 4.285775 CCCTCTTTCTCAGTTTCTCCTCTT 59.714 45.833 0.00 0.00 0.00 2.85
877 3459 5.478407 CCTCTTTCTCAGTTTCTCCTCTTC 58.522 45.833 0.00 0.00 0.00 2.87
878 3460 5.245977 CCTCTTTCTCAGTTTCTCCTCTTCT 59.754 44.000 0.00 0.00 0.00 2.85
879 3461 6.239572 CCTCTTTCTCAGTTTCTCCTCTTCTT 60.240 42.308 0.00 0.00 0.00 2.52
880 3462 6.754193 TCTTTCTCAGTTTCTCCTCTTCTTC 58.246 40.000 0.00 0.00 0.00 2.87
881 3463 6.325028 TCTTTCTCAGTTTCTCCTCTTCTTCA 59.675 38.462 0.00 0.00 0.00 3.02
882 3464 6.678568 TTCTCAGTTTCTCCTCTTCTTCAT 57.321 37.500 0.00 0.00 0.00 2.57
883 3465 6.279513 TCTCAGTTTCTCCTCTTCTTCATC 57.720 41.667 0.00 0.00 0.00 2.92
884 3466 5.186797 TCTCAGTTTCTCCTCTTCTTCATCC 59.813 44.000 0.00 0.00 0.00 3.51
885 3467 4.223923 TCAGTTTCTCCTCTTCTTCATCCC 59.776 45.833 0.00 0.00 0.00 3.85
886 3468 4.224818 CAGTTTCTCCTCTTCTTCATCCCT 59.775 45.833 0.00 0.00 0.00 4.20
887 3469 4.469586 AGTTTCTCCTCTTCTTCATCCCTC 59.530 45.833 0.00 0.00 0.00 4.30
888 3470 4.344938 TTCTCCTCTTCTTCATCCCTCT 57.655 45.455 0.00 0.00 0.00 3.69
889 3471 4.344938 TCTCCTCTTCTTCATCCCTCTT 57.655 45.455 0.00 0.00 0.00 2.85
890 3472 4.693420 TCTCCTCTTCTTCATCCCTCTTT 58.307 43.478 0.00 0.00 0.00 2.52
891 3473 4.714308 TCTCCTCTTCTTCATCCCTCTTTC 59.286 45.833 0.00 0.00 0.00 2.62
892 3474 4.693420 TCCTCTTCTTCATCCCTCTTTCT 58.307 43.478 0.00 0.00 0.00 2.52
893 3475 4.714308 TCCTCTTCTTCATCCCTCTTTCTC 59.286 45.833 0.00 0.00 0.00 2.87
894 3476 4.469227 CCTCTTCTTCATCCCTCTTTCTCA 59.531 45.833 0.00 0.00 0.00 3.27
895 3477 5.395546 CCTCTTCTTCATCCCTCTTTCTCAG 60.396 48.000 0.00 0.00 0.00 3.35
896 3478 5.090139 TCTTCTTCATCCCTCTTTCTCAGT 58.910 41.667 0.00 0.00 0.00 3.41
897 3479 5.545723 TCTTCTTCATCCCTCTTTCTCAGTT 59.454 40.000 0.00 0.00 0.00 3.16
898 3480 5.832539 TCTTCATCCCTCTTTCTCAGTTT 57.167 39.130 0.00 0.00 0.00 2.66
899 3481 5.799213 TCTTCATCCCTCTTTCTCAGTTTC 58.201 41.667 0.00 0.00 0.00 2.78
900 3482 5.545723 TCTTCATCCCTCTTTCTCAGTTTCT 59.454 40.000 0.00 0.00 0.00 2.52
901 3483 5.413309 TCATCCCTCTTTCTCAGTTTCTC 57.587 43.478 0.00 0.00 0.00 2.87
902 3484 4.223923 TCATCCCTCTTTCTCAGTTTCTCC 59.776 45.833 0.00 0.00 0.00 3.71
903 3485 3.863086 TCCCTCTTTCTCAGTTTCTCCT 58.137 45.455 0.00 0.00 0.00 3.69
904 3486 4.235372 TCCCTCTTTCTCAGTTTCTCCTT 58.765 43.478 0.00 0.00 0.00 3.36
975 3557 3.512724 AGGAACAAATCAATCCCAAGCAG 59.487 43.478 0.00 0.00 33.55 4.24
1009 3591 1.069823 AGCTTCCTGCCATGACTATCG 59.930 52.381 0.00 0.00 44.23 2.92
1170 3752 1.446272 GTCCTTCTTCGACGCCCAG 60.446 63.158 0.00 0.00 0.00 4.45
1600 4182 1.684734 GGTCGCCTTACCTCCCTCA 60.685 63.158 0.00 0.00 36.53 3.86
1791 4373 1.372872 CGGACTCGTCATGTGCACA 60.373 57.895 24.08 24.08 0.00 4.57
1924 4510 6.463755 GGGGTTTGAGTGTGTAATTGGATTTT 60.464 38.462 0.00 0.00 0.00 1.82
2002 4591 5.237815 TGTGTTCAACCACATAGAGATGTC 58.762 41.667 0.00 0.00 44.82 3.06
2003 4592 5.221621 TGTGTTCAACCACATAGAGATGTCA 60.222 40.000 0.00 0.00 44.82 3.58
2004 4593 5.349817 GTGTTCAACCACATAGAGATGTCAG 59.650 44.000 0.00 0.00 44.82 3.51
2005 4594 5.245977 TGTTCAACCACATAGAGATGTCAGA 59.754 40.000 0.00 0.00 44.82 3.27
2006 4595 6.070596 TGTTCAACCACATAGAGATGTCAGAT 60.071 38.462 0.00 0.00 44.82 2.90
2007 4596 5.910614 TCAACCACATAGAGATGTCAGATG 58.089 41.667 0.00 0.00 44.82 2.90
2008 4597 5.423290 TCAACCACATAGAGATGTCAGATGT 59.577 40.000 5.01 5.01 44.82 3.06
2058 4647 5.360714 CCATGTCAAAAACCCTAGCATGTAT 59.639 40.000 0.00 0.00 32.77 2.29
2067 4656 5.171339 ACCCTAGCATGTATCCATCAATC 57.829 43.478 0.00 0.00 0.00 2.67
2085 4674 7.147966 CCATCAATCAGATTTCTCATGAAACCA 60.148 37.037 0.00 0.00 43.90 3.67
2087 4676 7.170277 TCAATCAGATTTCTCATGAAACCAGA 58.830 34.615 0.00 0.00 43.90 3.86
2107 4696 5.121142 CCAGATGGTTTGATGAAAAATGCAC 59.879 40.000 0.00 0.00 0.00 4.57
2112 4701 5.069648 TGGTTTGATGAAAAATGCACTGGTA 59.930 36.000 0.00 0.00 0.00 3.25
2113 4702 5.988561 GGTTTGATGAAAAATGCACTGGTAA 59.011 36.000 0.00 0.00 0.00 2.85
2114 4703 6.650390 GGTTTGATGAAAAATGCACTGGTAAT 59.350 34.615 0.00 0.00 0.00 1.89
2115 4704 7.173047 GGTTTGATGAAAAATGCACTGGTAATT 59.827 33.333 0.00 0.00 0.00 1.40
2116 4705 9.202273 GTTTGATGAAAAATGCACTGGTAATTA 57.798 29.630 0.00 0.00 0.00 1.40
2117 4706 9.770097 TTTGATGAAAAATGCACTGGTAATTAA 57.230 25.926 0.00 0.00 0.00 1.40
2214 4804 6.642683 TCTCACGTAAGCAACTATTAAAGC 57.357 37.500 0.00 0.00 45.62 3.51
2220 4810 7.686938 CACGTAAGCAACTATTAAAGCAAGTAC 59.313 37.037 0.00 0.00 45.62 2.73
2292 4882 5.619220 CTCATATGAAGGGGAAAGAAGAGG 58.381 45.833 6.90 0.00 0.00 3.69
2328 4918 4.021894 AGCCGGCTACAGAATAATAGACAG 60.022 45.833 31.86 0.00 0.00 3.51
2332 4922 5.508153 CGGCTACAGAATAATAGACAGCTGT 60.508 44.000 21.88 21.88 39.61 4.40
2339 4929 5.749109 AGAATAATAGACAGCTGTAACACGC 59.251 40.000 21.73 6.06 0.00 5.34
2340 4930 1.909376 ATAGACAGCTGTAACACGCG 58.091 50.000 21.73 3.53 0.00 6.01
2341 4931 0.731514 TAGACAGCTGTAACACGCGC 60.732 55.000 21.73 4.40 0.00 6.86
2342 4932 2.022129 GACAGCTGTAACACGCGCT 61.022 57.895 21.73 0.00 0.00 5.92
2343 4933 1.945776 GACAGCTGTAACACGCGCTC 61.946 60.000 21.73 0.00 0.00 5.03
2344 4934 2.021584 CAGCTGTAACACGCGCTCA 61.022 57.895 5.73 0.00 0.00 4.26
2345 4935 1.079819 AGCTGTAACACGCGCTCAT 60.080 52.632 5.73 0.00 0.00 2.90
2346 4936 0.172578 AGCTGTAACACGCGCTCATA 59.827 50.000 5.73 0.00 0.00 2.15
2347 4937 0.572590 GCTGTAACACGCGCTCATAG 59.427 55.000 5.73 0.00 0.00 2.23
2348 4938 1.200483 CTGTAACACGCGCTCATAGG 58.800 55.000 5.73 0.00 0.00 2.57
2349 4939 0.804544 TGTAACACGCGCTCATAGGC 60.805 55.000 5.73 0.00 0.00 3.93
2350 4940 0.804544 GTAACACGCGCTCATAGGCA 60.805 55.000 5.73 0.00 0.00 4.75
2351 4941 0.527600 TAACACGCGCTCATAGGCAG 60.528 55.000 5.73 0.00 0.00 4.85
2352 4942 2.202797 CACGCGCTCATAGGCAGT 60.203 61.111 5.73 0.00 0.00 4.40
2353 4943 2.202797 ACGCGCTCATAGGCAGTG 60.203 61.111 5.73 0.00 0.00 3.66
2354 4944 2.963854 CGCGCTCATAGGCAGTGG 60.964 66.667 5.56 0.00 0.00 4.00
2355 4945 3.275338 GCGCTCATAGGCAGTGGC 61.275 66.667 9.02 9.02 40.13 5.01
2356 4946 2.963854 CGCTCATAGGCAGTGGCG 60.964 66.667 11.51 1.98 42.47 5.69
2357 4947 2.501128 GCTCATAGGCAGTGGCGA 59.499 61.111 11.51 6.48 42.47 5.54
2358 4948 1.153369 GCTCATAGGCAGTGGCGAA 60.153 57.895 11.51 4.05 42.47 4.70
2359 4949 1.156645 GCTCATAGGCAGTGGCGAAG 61.157 60.000 11.51 3.14 42.47 3.79
2372 4962 2.125106 CGAAGCTACAGGGTGGCC 60.125 66.667 0.00 0.00 40.93 5.36
2373 4963 2.954684 CGAAGCTACAGGGTGGCCA 61.955 63.158 0.00 0.00 40.93 5.36
2374 4964 1.078143 GAAGCTACAGGGTGGCCAG 60.078 63.158 5.11 0.00 40.93 4.85
2375 4965 2.543067 GAAGCTACAGGGTGGCCAGG 62.543 65.000 5.11 0.00 40.93 4.45
2376 4966 4.115199 GCTACAGGGTGGCCAGGG 62.115 72.222 5.11 0.00 33.94 4.45
2377 4967 2.610859 CTACAGGGTGGCCAGGGT 60.611 66.667 5.11 4.53 0.00 4.34
2378 4968 2.933287 TACAGGGTGGCCAGGGTG 60.933 66.667 5.11 6.08 0.00 4.61
2400 4990 4.115199 GCGGCCCACCCTGAGATT 62.115 66.667 0.00 0.00 0.00 2.40
2401 4991 2.677228 CGGCCCACCCTGAGATTT 59.323 61.111 0.00 0.00 0.00 2.17
2402 4992 1.000896 CGGCCCACCCTGAGATTTT 60.001 57.895 0.00 0.00 0.00 1.82
2403 4993 1.315257 CGGCCCACCCTGAGATTTTG 61.315 60.000 0.00 0.00 0.00 2.44
2404 4994 0.972471 GGCCCACCCTGAGATTTTGG 60.972 60.000 0.00 0.00 0.00 3.28
2405 4995 3.288099 CCCACCCTGAGATTTTGGG 57.712 57.895 0.00 0.00 46.07 4.12
2409 4999 3.175133 CCCTGAGATTTTGGGTCCG 57.825 57.895 0.00 0.00 36.32 4.79
2410 5000 1.032114 CCCTGAGATTTTGGGTCCGC 61.032 60.000 0.00 0.00 36.32 5.54
2411 5001 0.035056 CCTGAGATTTTGGGTCCGCT 60.035 55.000 0.00 0.00 0.00 5.52
2412 5002 1.614317 CCTGAGATTTTGGGTCCGCTT 60.614 52.381 0.00 0.00 0.00 4.68
2413 5003 2.355716 CCTGAGATTTTGGGTCCGCTTA 60.356 50.000 0.00 0.00 0.00 3.09
2414 5004 3.545703 CTGAGATTTTGGGTCCGCTTAT 58.454 45.455 0.00 0.00 0.00 1.73
2415 5005 4.444306 CCTGAGATTTTGGGTCCGCTTATA 60.444 45.833 0.00 0.00 0.00 0.98
2416 5006 5.304686 TGAGATTTTGGGTCCGCTTATAT 57.695 39.130 0.00 0.00 0.00 0.86
2417 5007 6.428083 TGAGATTTTGGGTCCGCTTATATA 57.572 37.500 0.00 0.00 0.00 0.86
2418 5008 6.228258 TGAGATTTTGGGTCCGCTTATATAC 58.772 40.000 0.00 0.00 0.00 1.47
2419 5009 5.557866 AGATTTTGGGTCCGCTTATATACC 58.442 41.667 0.00 0.00 0.00 2.73
2420 5010 5.309806 AGATTTTGGGTCCGCTTATATACCT 59.690 40.000 0.00 0.00 32.38 3.08
2421 5011 6.499350 AGATTTTGGGTCCGCTTATATACCTA 59.501 38.462 0.00 0.00 32.38 3.08
2422 5012 6.691255 TTTTGGGTCCGCTTATATACCTAT 57.309 37.500 0.00 0.00 32.38 2.57
2423 5013 5.670792 TTGGGTCCGCTTATATACCTATG 57.329 43.478 0.00 0.00 32.38 2.23
2424 5014 4.028131 TGGGTCCGCTTATATACCTATGG 58.972 47.826 0.00 0.00 32.38 2.74
2425 5015 4.264487 TGGGTCCGCTTATATACCTATGGA 60.264 45.833 0.00 0.00 32.38 3.41
2426 5016 4.900054 GGGTCCGCTTATATACCTATGGAT 59.100 45.833 0.00 0.00 32.38 3.41
2427 5017 5.365895 GGGTCCGCTTATATACCTATGGATT 59.634 44.000 0.00 0.00 32.38 3.01
2428 5018 6.126854 GGGTCCGCTTATATACCTATGGATTT 60.127 42.308 0.00 0.00 32.38 2.17
2429 5019 7.336396 GGTCCGCTTATATACCTATGGATTTT 58.664 38.462 0.00 0.00 0.00 1.82
2430 5020 7.827729 GGTCCGCTTATATACCTATGGATTTTT 59.172 37.037 0.00 0.00 0.00 1.94
2431 5021 9.880157 GTCCGCTTATATACCTATGGATTTTTA 57.120 33.333 0.00 0.00 0.00 1.52
2438 5028 8.879427 ATATACCTATGGATTTTTAACTGGGC 57.121 34.615 0.00 0.00 0.00 5.36
2439 5029 5.206905 ACCTATGGATTTTTAACTGGGCT 57.793 39.130 0.00 0.00 0.00 5.19
2440 5030 6.335781 ACCTATGGATTTTTAACTGGGCTA 57.664 37.500 0.00 0.00 0.00 3.93
2441 5031 6.365520 ACCTATGGATTTTTAACTGGGCTAG 58.634 40.000 0.00 0.00 0.00 3.42
2442 5032 6.159751 ACCTATGGATTTTTAACTGGGCTAGA 59.840 38.462 4.33 0.00 0.00 2.43
2443 5033 7.060421 CCTATGGATTTTTAACTGGGCTAGAA 58.940 38.462 4.33 0.00 0.00 2.10
2444 5034 7.559897 CCTATGGATTTTTAACTGGGCTAGAAA 59.440 37.037 4.33 0.00 0.00 2.52
2445 5035 7.790782 ATGGATTTTTAACTGGGCTAGAAAA 57.209 32.000 4.33 1.56 0.00 2.29
2446 5036 7.604657 TGGATTTTTAACTGGGCTAGAAAAA 57.395 32.000 4.33 8.61 34.51 1.94
2469 5059 5.845391 AAATTGACCCAATAACCATACCG 57.155 39.130 0.00 0.00 32.43 4.02
2470 5060 4.781775 ATTGACCCAATAACCATACCGA 57.218 40.909 0.00 0.00 31.77 4.69
2471 5061 4.781775 TTGACCCAATAACCATACCGAT 57.218 40.909 0.00 0.00 0.00 4.18
2472 5062 4.781775 TGACCCAATAACCATACCGATT 57.218 40.909 0.00 0.00 0.00 3.34
2473 5063 4.456535 TGACCCAATAACCATACCGATTG 58.543 43.478 0.00 0.00 0.00 2.67
2474 5064 4.164413 TGACCCAATAACCATACCGATTGA 59.836 41.667 0.00 0.00 32.16 2.57
2475 5065 4.457466 ACCCAATAACCATACCGATTGAC 58.543 43.478 0.00 0.00 32.16 3.18
2476 5066 3.818773 CCCAATAACCATACCGATTGACC 59.181 47.826 0.00 0.00 32.16 4.02
2477 5067 3.818773 CCAATAACCATACCGATTGACCC 59.181 47.826 0.00 0.00 32.16 4.46
2478 5068 4.456535 CAATAACCATACCGATTGACCCA 58.543 43.478 0.00 0.00 32.16 4.51
2479 5069 2.710096 AACCATACCGATTGACCCAG 57.290 50.000 0.00 0.00 0.00 4.45
2480 5070 1.580059 ACCATACCGATTGACCCAGT 58.420 50.000 0.00 0.00 0.00 4.00
2481 5071 1.209504 ACCATACCGATTGACCCAGTG 59.790 52.381 0.00 0.00 0.00 3.66
2482 5072 1.484653 CCATACCGATTGACCCAGTGA 59.515 52.381 0.00 0.00 0.00 3.41
2483 5073 2.093181 CCATACCGATTGACCCAGTGAA 60.093 50.000 0.00 0.00 0.00 3.18
2484 5074 2.754946 TACCGATTGACCCAGTGAAC 57.245 50.000 0.00 0.00 0.00 3.18
2485 5075 0.320421 ACCGATTGACCCAGTGAACG 60.320 55.000 0.00 0.00 0.00 3.95
2486 5076 1.635663 CCGATTGACCCAGTGAACGC 61.636 60.000 0.00 0.00 0.00 4.84
2487 5077 0.948623 CGATTGACCCAGTGAACGCA 60.949 55.000 0.00 0.00 0.00 5.24
2488 5078 0.798776 GATTGACCCAGTGAACGCAG 59.201 55.000 0.00 0.00 0.00 5.18
2489 5079 1.237285 ATTGACCCAGTGAACGCAGC 61.237 55.000 0.00 0.00 0.00 5.25
2490 5080 3.050275 GACCCAGTGAACGCAGCC 61.050 66.667 0.00 0.00 0.00 4.85
2491 5081 3.825160 GACCCAGTGAACGCAGCCA 62.825 63.158 0.00 0.00 0.00 4.75
2492 5082 3.357079 CCCAGTGAACGCAGCCAC 61.357 66.667 0.00 0.00 35.19 5.01
2493 5083 2.591429 CCAGTGAACGCAGCCACA 60.591 61.111 3.48 0.00 36.96 4.17
2494 5084 2.186160 CCAGTGAACGCAGCCACAA 61.186 57.895 3.48 0.00 36.96 3.33
2495 5085 1.009675 CAGTGAACGCAGCCACAAC 60.010 57.895 3.48 0.00 36.96 3.32
2496 5086 2.186826 AGTGAACGCAGCCACAACC 61.187 57.895 3.48 0.00 36.96 3.77
2497 5087 2.904866 TGAACGCAGCCACAACCC 60.905 61.111 0.00 0.00 0.00 4.11
2498 5088 2.594592 GAACGCAGCCACAACCCT 60.595 61.111 0.00 0.00 0.00 4.34
2499 5089 2.594592 AACGCAGCCACAACCCTC 60.595 61.111 0.00 0.00 0.00 4.30
2500 5090 4.988598 ACGCAGCCACAACCCTCG 62.989 66.667 0.00 0.00 0.00 4.63
2501 5091 4.988598 CGCAGCCACAACCCTCGT 62.989 66.667 0.00 0.00 0.00 4.18
2502 5092 3.050275 GCAGCCACAACCCTCGTC 61.050 66.667 0.00 0.00 0.00 4.20
2503 5093 2.743718 CAGCCACAACCCTCGTCT 59.256 61.111 0.00 0.00 0.00 4.18
2504 5094 1.374758 CAGCCACAACCCTCGTCTC 60.375 63.158 0.00 0.00 0.00 3.36
2505 5095 2.432628 GCCACAACCCTCGTCTCG 60.433 66.667 0.00 0.00 0.00 4.04
2506 5096 3.048602 CCACAACCCTCGTCTCGT 58.951 61.111 0.00 0.00 0.00 4.18
2507 5097 1.080705 CCACAACCCTCGTCTCGTC 60.081 63.158 0.00 0.00 0.00 4.20
2508 5098 1.080705 CACAACCCTCGTCTCGTCC 60.081 63.158 0.00 0.00 0.00 4.79
2509 5099 1.529948 ACAACCCTCGTCTCGTCCA 60.530 57.895 0.00 0.00 0.00 4.02
2510 5100 1.080705 CAACCCTCGTCTCGTCCAC 60.081 63.158 0.00 0.00 0.00 4.02
2511 5101 1.228490 AACCCTCGTCTCGTCCACT 60.228 57.895 0.00 0.00 0.00 4.00
2512 5102 0.826672 AACCCTCGTCTCGTCCACTT 60.827 55.000 0.00 0.00 0.00 3.16
2513 5103 1.242665 ACCCTCGTCTCGTCCACTTC 61.243 60.000 0.00 0.00 0.00 3.01
2514 5104 1.507174 CCTCGTCTCGTCCACTTCC 59.493 63.158 0.00 0.00 0.00 3.46
2515 5105 0.961358 CCTCGTCTCGTCCACTTCCT 60.961 60.000 0.00 0.00 0.00 3.36
2516 5106 0.448593 CTCGTCTCGTCCACTTCCTC 59.551 60.000 0.00 0.00 0.00 3.71
2517 5107 0.959372 TCGTCTCGTCCACTTCCTCC 60.959 60.000 0.00 0.00 0.00 4.30
2518 5108 1.507174 GTCTCGTCCACTTCCTCCG 59.493 63.158 0.00 0.00 0.00 4.63
2519 5109 1.074423 TCTCGTCCACTTCCTCCGT 59.926 57.895 0.00 0.00 0.00 4.69
2520 5110 0.538977 TCTCGTCCACTTCCTCCGTT 60.539 55.000 0.00 0.00 0.00 4.44
2521 5111 0.109226 CTCGTCCACTTCCTCCGTTC 60.109 60.000 0.00 0.00 0.00 3.95
2522 5112 1.080025 CGTCCACTTCCTCCGTTCC 60.080 63.158 0.00 0.00 0.00 3.62
2523 5113 1.533469 CGTCCACTTCCTCCGTTCCT 61.533 60.000 0.00 0.00 0.00 3.36
2524 5114 0.246910 GTCCACTTCCTCCGTTCCTC 59.753 60.000 0.00 0.00 0.00 3.71
2525 5115 0.178944 TCCACTTCCTCCGTTCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
2526 5116 0.905357 CCACTTCCTCCGTTCCTCAT 59.095 55.000 0.00 0.00 0.00 2.90
2527 5117 1.134670 CCACTTCCTCCGTTCCTCATC 60.135 57.143 0.00 0.00 0.00 2.92
2528 5118 1.827969 CACTTCCTCCGTTCCTCATCT 59.172 52.381 0.00 0.00 0.00 2.90
2529 5119 2.104170 ACTTCCTCCGTTCCTCATCTC 58.896 52.381 0.00 0.00 0.00 2.75
2530 5120 1.066303 CTTCCTCCGTTCCTCATCTCG 59.934 57.143 0.00 0.00 0.00 4.04
2531 5121 0.034380 TCCTCCGTTCCTCATCTCGT 60.034 55.000 0.00 0.00 0.00 4.18
2532 5122 0.382515 CCTCCGTTCCTCATCTCGTC 59.617 60.000 0.00 0.00 0.00 4.20
2533 5123 0.382515 CTCCGTTCCTCATCTCGTCC 59.617 60.000 0.00 0.00 0.00 4.79
2534 5124 0.323087 TCCGTTCCTCATCTCGTCCA 60.323 55.000 0.00 0.00 0.00 4.02
2535 5125 0.179134 CCGTTCCTCATCTCGTCCAC 60.179 60.000 0.00 0.00 0.00 4.02
2536 5126 0.811915 CGTTCCTCATCTCGTCCACT 59.188 55.000 0.00 0.00 0.00 4.00
2537 5127 1.468224 CGTTCCTCATCTCGTCCACTG 60.468 57.143 0.00 0.00 0.00 3.66
2538 5128 0.532573 TTCCTCATCTCGTCCACTGC 59.467 55.000 0.00 0.00 0.00 4.40
2539 5129 0.611896 TCCTCATCTCGTCCACTGCA 60.612 55.000 0.00 0.00 0.00 4.41
2540 5130 0.179116 CCTCATCTCGTCCACTGCAG 60.179 60.000 13.48 13.48 0.00 4.41
2541 5131 0.805322 CTCATCTCGTCCACTGCAGC 60.805 60.000 15.27 0.00 0.00 5.25
2542 5132 1.812922 CATCTCGTCCACTGCAGCC 60.813 63.158 15.27 0.00 0.00 4.85
2543 5133 3.362399 ATCTCGTCCACTGCAGCCG 62.362 63.158 15.27 11.32 0.00 5.52
2547 5137 3.426568 GTCCACTGCAGCCGCTTC 61.427 66.667 15.27 0.00 39.64 3.86
2548 5138 3.939939 TCCACTGCAGCCGCTTCA 61.940 61.111 15.27 0.00 39.64 3.02
2549 5139 2.979676 CCACTGCAGCCGCTTCAA 60.980 61.111 15.27 0.00 39.64 2.69
2550 5140 2.559840 CACTGCAGCCGCTTCAAG 59.440 61.111 15.27 0.00 39.64 3.02
2551 5141 3.360340 ACTGCAGCCGCTTCAAGC 61.360 61.111 15.27 0.00 39.64 4.01
2552 5142 4.112341 CTGCAGCCGCTTCAAGCC 62.112 66.667 3.08 0.00 38.18 4.35
2555 5145 3.793144 CAGCCGCTTCAAGCCGAC 61.793 66.667 3.08 0.00 38.18 4.79
2560 5150 3.127533 GCTTCAAGCCGACGCCAT 61.128 61.111 0.00 0.00 34.48 4.40
2561 5151 3.093278 CTTCAAGCCGACGCCATC 58.907 61.111 0.00 0.00 34.57 3.51
2562 5152 1.448540 CTTCAAGCCGACGCCATCT 60.449 57.895 0.00 0.00 34.57 2.90
2563 5153 1.699656 CTTCAAGCCGACGCCATCTG 61.700 60.000 0.00 0.00 34.57 2.90
2564 5154 2.125552 CAAGCCGACGCCATCTGA 60.126 61.111 0.00 0.00 34.57 3.27
2565 5155 2.125512 AAGCCGACGCCATCTGAC 60.126 61.111 0.00 0.00 34.57 3.51
2566 5156 3.989698 AAGCCGACGCCATCTGACG 62.990 63.158 0.00 0.00 34.57 4.35
2570 5160 4.148825 GACGCCATCTGACGCCCT 62.149 66.667 0.00 0.00 0.00 5.19
2571 5161 4.148825 ACGCCATCTGACGCCCTC 62.149 66.667 0.00 0.00 0.00 4.30
2626 5216 4.767255 CTGGCCGGAGCACAGACC 62.767 72.222 5.28 0.00 42.56 3.85
2631 5221 4.803426 CGGAGCACAGACCGCCTC 62.803 72.222 0.00 0.00 42.55 4.70
2632 5222 4.459089 GGAGCACAGACCGCCTCC 62.459 72.222 0.00 0.00 0.00 4.30
2633 5223 4.459089 GAGCACAGACCGCCTCCC 62.459 72.222 0.00 0.00 0.00 4.30
2636 5226 3.322466 CACAGACCGCCTCCCCTT 61.322 66.667 0.00 0.00 0.00 3.95
2637 5227 3.003763 ACAGACCGCCTCCCCTTC 61.004 66.667 0.00 0.00 0.00 3.46
2638 5228 3.787001 CAGACCGCCTCCCCTTCC 61.787 72.222 0.00 0.00 0.00 3.46
2665 5255 3.854669 CTCGCTTGGCCCTCGGAT 61.855 66.667 0.00 0.00 0.00 4.18
2666 5256 3.798954 CTCGCTTGGCCCTCGGATC 62.799 68.421 0.00 0.00 0.00 3.36
2667 5257 4.918201 CGCTTGGCCCTCGGATCC 62.918 72.222 0.00 0.00 0.00 3.36
2668 5258 3.797353 GCTTGGCCCTCGGATCCA 61.797 66.667 13.41 0.00 0.00 3.41
2669 5259 2.190578 CTTGGCCCTCGGATCCAC 59.809 66.667 13.41 0.00 0.00 4.02
2670 5260 3.406595 CTTGGCCCTCGGATCCACC 62.407 68.421 13.41 5.23 0.00 4.61
2710 5300 4.785453 CCCGGCTGCTCCCTTGAC 62.785 72.222 0.00 0.00 0.00 3.18
2711 5301 3.710722 CCGGCTGCTCCCTTGACT 61.711 66.667 0.00 0.00 0.00 3.41
2712 5302 2.125350 CGGCTGCTCCCTTGACTC 60.125 66.667 0.00 0.00 0.00 3.36
2713 5303 2.125350 GGCTGCTCCCTTGACTCG 60.125 66.667 0.00 0.00 0.00 4.18
2714 5304 2.125350 GCTGCTCCCTTGACTCGG 60.125 66.667 0.00 0.00 0.00 4.63
2715 5305 2.650116 GCTGCTCCCTTGACTCGGA 61.650 63.158 0.00 0.00 0.00 4.55
2716 5306 1.216710 CTGCTCCCTTGACTCGGAC 59.783 63.158 0.00 0.00 0.00 4.79
2717 5307 2.232298 CTGCTCCCTTGACTCGGACC 62.232 65.000 0.00 0.00 0.00 4.46
2718 5308 2.885861 CTCCCTTGACTCGGACCG 59.114 66.667 7.84 7.84 0.00 4.79
2719 5309 3.358076 CTCCCTTGACTCGGACCGC 62.358 68.421 9.66 0.00 0.00 5.68
2720 5310 4.452733 CCCTTGACTCGGACCGCC 62.453 72.222 9.66 1.22 0.00 6.13
2721 5311 3.382832 CCTTGACTCGGACCGCCT 61.383 66.667 9.66 0.00 0.00 5.52
2722 5312 2.125912 CTTGACTCGGACCGCCTG 60.126 66.667 9.66 4.40 0.00 4.85
2723 5313 3.649277 CTTGACTCGGACCGCCTGG 62.649 68.421 9.66 1.77 42.84 4.45
2764 5354 2.266055 CTCCAGTGGAGTTCGGCC 59.734 66.667 28.38 0.00 44.25 6.13
2765 5355 3.316573 CTCCAGTGGAGTTCGGCCC 62.317 68.421 28.38 0.00 44.25 5.80
2766 5356 3.322466 CCAGTGGAGTTCGGCCCT 61.322 66.667 1.68 0.00 0.00 5.19
2767 5357 2.266055 CAGTGGAGTTCGGCCCTC 59.734 66.667 0.00 0.00 0.00 4.30
2768 5358 2.120718 AGTGGAGTTCGGCCCTCT 59.879 61.111 0.00 0.00 0.00 3.69
2769 5359 2.266055 GTGGAGTTCGGCCCTCTG 59.734 66.667 0.00 0.00 0.00 3.35
2770 5360 3.706373 TGGAGTTCGGCCCTCTGC 61.706 66.667 0.00 0.00 40.16 4.26
2779 5369 4.891037 GCCCTCTGCCCTCCATGC 62.891 72.222 0.00 0.00 0.00 4.06
2780 5370 3.414193 CCCTCTGCCCTCCATGCA 61.414 66.667 0.00 0.00 37.17 3.96
2781 5371 2.679092 CCTCTGCCCTCCATGCAA 59.321 61.111 0.00 0.00 38.46 4.08
2782 5372 1.000521 CCTCTGCCCTCCATGCAAA 60.001 57.895 0.00 0.00 38.46 3.68
2783 5373 1.035932 CCTCTGCCCTCCATGCAAAG 61.036 60.000 0.00 0.00 38.46 2.77
2784 5374 1.664321 CTCTGCCCTCCATGCAAAGC 61.664 60.000 0.00 0.00 38.46 3.51
2785 5375 2.681064 TGCCCTCCATGCAAAGCC 60.681 61.111 0.00 0.00 35.40 4.35
2786 5376 2.363406 GCCCTCCATGCAAAGCCT 60.363 61.111 0.00 0.00 0.00 4.58
2787 5377 1.076777 GCCCTCCATGCAAAGCCTA 60.077 57.895 0.00 0.00 0.00 3.93
2788 5378 1.387295 GCCCTCCATGCAAAGCCTAC 61.387 60.000 0.00 0.00 0.00 3.18
2789 5379 1.097547 CCCTCCATGCAAAGCCTACG 61.098 60.000 0.00 0.00 0.00 3.51
2790 5380 1.097547 CCTCCATGCAAAGCCTACGG 61.098 60.000 0.00 0.00 0.00 4.02
2808 5398 4.363990 CCGTCGGTGCTGCTCAGT 62.364 66.667 2.08 0.00 0.00 3.41
2809 5399 2.566529 CGTCGGTGCTGCTCAGTA 59.433 61.111 0.00 0.00 0.00 2.74
2810 5400 1.515088 CGTCGGTGCTGCTCAGTAG 60.515 63.158 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.813296 AGTCCAAACACGATGAAACTTC 57.187 40.909 0.00 0.00 0.00 3.01
42 43 7.383102 TGCATGTTTTTGGTTTTACACAAAT 57.617 28.000 0.00 0.00 36.57 2.32
90 91 6.368779 AACTAACCTATTAACTCAGTGCCA 57.631 37.500 0.00 0.00 0.00 4.92
221 222 8.998814 TCCCAAGATACCTATGAACTTCAAATA 58.001 33.333 0.00 0.00 0.00 1.40
232 233 3.244215 ACGTGCATCCCAAGATACCTATG 60.244 47.826 0.00 0.00 0.00 2.23
236 237 1.583054 GACGTGCATCCCAAGATACC 58.417 55.000 0.00 0.00 0.00 2.73
253 254 0.741221 GAGCCATGTGGACGAAGGAC 60.741 60.000 2.55 0.00 37.39 3.85
257 258 0.037326 GTCAGAGCCATGTGGACGAA 60.037 55.000 2.55 0.00 37.39 3.85
308 309 3.003173 TCTGGCCTCAACTCCCCG 61.003 66.667 3.32 0.00 0.00 5.73
322 323 3.393970 TGCTTCCCTCCGCCTCTG 61.394 66.667 0.00 0.00 0.00 3.35
328 329 2.093447 ACTCTTAATGTGCTTCCCTCCG 60.093 50.000 0.00 0.00 0.00 4.63
339 340 4.407296 CCCTCTAGCCTCAACTCTTAATGT 59.593 45.833 0.00 0.00 0.00 2.71
406 412 3.068691 CTCTCCCTTCGGCGACCA 61.069 66.667 10.16 0.00 0.00 4.02
426 432 1.183030 TCTCGTGACCAACCCGATGT 61.183 55.000 0.00 0.00 0.00 3.06
428 434 0.175760 CATCTCGTGACCAACCCGAT 59.824 55.000 0.00 0.00 0.00 4.18
446 453 2.069465 GAACCATGCCAACGTGCACA 62.069 55.000 18.64 0.00 45.48 4.57
458 465 4.080695 TCCTCAAATCTCTCCTGAACCATG 60.081 45.833 0.00 0.00 0.00 3.66
478 489 8.588472 CCATGTTTCCTTTTTATTTTCTCTCCT 58.412 33.333 0.00 0.00 0.00 3.69
532 543 0.109319 AATTTCATGTTCACGCGGGC 60.109 50.000 12.47 0.00 0.00 6.13
559 570 4.520492 AGCCTCATCACACGAGAAATTTTT 59.480 37.500 0.00 0.00 31.84 1.94
560 571 4.074970 AGCCTCATCACACGAGAAATTTT 58.925 39.130 0.00 0.00 31.84 1.82
561 572 3.679389 AGCCTCATCACACGAGAAATTT 58.321 40.909 0.00 0.00 31.84 1.82
562 573 3.265791 GAGCCTCATCACACGAGAAATT 58.734 45.455 0.00 0.00 31.84 1.82
563 574 2.419297 GGAGCCTCATCACACGAGAAAT 60.419 50.000 0.00 0.00 31.84 2.17
570 581 1.134371 GTTAGGGGAGCCTCATCACAC 60.134 57.143 0.00 0.00 0.00 3.82
573 584 2.196742 ATGTTAGGGGAGCCTCATCA 57.803 50.000 0.00 0.00 0.00 3.07
605 616 0.887933 CACATGTTAGTGGCCCAACC 59.112 55.000 0.00 0.00 35.88 3.77
626 637 4.079787 ACATGTTGGCCAACCTATCTATGT 60.080 41.667 38.90 33.90 40.46 2.29
628 639 4.796110 ACATGTTGGCCAACCTATCTAT 57.204 40.909 38.90 24.69 40.46 1.98
643 3224 3.181445 TGCAGTTGGGTCTCTAACATGTT 60.181 43.478 16.68 16.68 36.90 2.71
670 3251 2.094854 CACAACTCCCCTCACGTACTAC 60.095 54.545 0.00 0.00 0.00 2.73
690 3271 1.140052 TCTCCCGCACAAGAAAGAACA 59.860 47.619 0.00 0.00 0.00 3.18
720 3301 8.157476 AGAAAGTTGGTATGTCTTGACTTACAT 58.843 33.333 20.64 5.72 39.56 2.29
836 3418 1.258445 GGGACGAAGAAGAGGCCTGA 61.258 60.000 12.00 0.00 0.00 3.86
838 3420 0.973496 GAGGGACGAAGAAGAGGCCT 60.973 60.000 3.86 3.86 0.00 5.19
839 3421 0.973496 AGAGGGACGAAGAAGAGGCC 60.973 60.000 0.00 0.00 0.00 5.19
875 3457 5.832539 AACTGAGAAAGAGGGATGAAGAA 57.167 39.130 0.00 0.00 0.00 2.52
876 3458 5.545723 AGAAACTGAGAAAGAGGGATGAAGA 59.454 40.000 0.00 0.00 0.00 2.87
877 3459 5.803552 AGAAACTGAGAAAGAGGGATGAAG 58.196 41.667 0.00 0.00 0.00 3.02
878 3460 5.280215 GGAGAAACTGAGAAAGAGGGATGAA 60.280 44.000 0.00 0.00 0.00 2.57
879 3461 4.223923 GGAGAAACTGAGAAAGAGGGATGA 59.776 45.833 0.00 0.00 0.00 2.92
880 3462 4.224818 AGGAGAAACTGAGAAAGAGGGATG 59.775 45.833 0.00 0.00 0.00 3.51
881 3463 4.434195 AGGAGAAACTGAGAAAGAGGGAT 58.566 43.478 0.00 0.00 0.00 3.85
882 3464 3.863086 AGGAGAAACTGAGAAAGAGGGA 58.137 45.455 0.00 0.00 0.00 4.20
883 3465 4.632327 AAGGAGAAACTGAGAAAGAGGG 57.368 45.455 0.00 0.00 0.00 4.30
884 3466 5.935206 GGTTAAGGAGAAACTGAGAAAGAGG 59.065 44.000 0.00 0.00 0.00 3.69
885 3467 6.525629 TGGTTAAGGAGAAACTGAGAAAGAG 58.474 40.000 0.00 0.00 0.00 2.85
886 3468 6.494666 TGGTTAAGGAGAAACTGAGAAAGA 57.505 37.500 0.00 0.00 0.00 2.52
887 3469 6.936900 TGATGGTTAAGGAGAAACTGAGAAAG 59.063 38.462 0.00 0.00 0.00 2.62
888 3470 6.710744 GTGATGGTTAAGGAGAAACTGAGAAA 59.289 38.462 0.00 0.00 0.00 2.52
889 3471 6.231211 GTGATGGTTAAGGAGAAACTGAGAA 58.769 40.000 0.00 0.00 0.00 2.87
890 3472 5.280011 GGTGATGGTTAAGGAGAAACTGAGA 60.280 44.000 0.00 0.00 0.00 3.27
891 3473 4.938226 GGTGATGGTTAAGGAGAAACTGAG 59.062 45.833 0.00 0.00 0.00 3.35
892 3474 4.349636 TGGTGATGGTTAAGGAGAAACTGA 59.650 41.667 0.00 0.00 0.00 3.41
893 3475 4.651778 TGGTGATGGTTAAGGAGAAACTG 58.348 43.478 0.00 0.00 0.00 3.16
894 3476 4.993705 TGGTGATGGTTAAGGAGAAACT 57.006 40.909 0.00 0.00 0.00 2.66
895 3477 6.095021 GGTATTGGTGATGGTTAAGGAGAAAC 59.905 42.308 0.00 0.00 0.00 2.78
896 3478 6.184789 GGTATTGGTGATGGTTAAGGAGAAA 58.815 40.000 0.00 0.00 0.00 2.52
897 3479 5.251932 TGGTATTGGTGATGGTTAAGGAGAA 59.748 40.000 0.00 0.00 0.00 2.87
898 3480 4.785914 TGGTATTGGTGATGGTTAAGGAGA 59.214 41.667 0.00 0.00 0.00 3.71
899 3481 4.881850 GTGGTATTGGTGATGGTTAAGGAG 59.118 45.833 0.00 0.00 0.00 3.69
900 3482 4.289934 TGTGGTATTGGTGATGGTTAAGGA 59.710 41.667 0.00 0.00 0.00 3.36
901 3483 4.398044 GTGTGGTATTGGTGATGGTTAAGG 59.602 45.833 0.00 0.00 0.00 2.69
902 3484 4.094294 CGTGTGGTATTGGTGATGGTTAAG 59.906 45.833 0.00 0.00 0.00 1.85
903 3485 4.004314 CGTGTGGTATTGGTGATGGTTAA 58.996 43.478 0.00 0.00 0.00 2.01
904 3486 3.601435 CGTGTGGTATTGGTGATGGTTA 58.399 45.455 0.00 0.00 0.00 2.85
1170 3752 1.342672 TAATCTTGGCGGGGGTCTCC 61.343 60.000 0.00 0.00 0.00 3.71
1180 3762 1.101635 GCGGGGAGGTTAATCTTGGC 61.102 60.000 0.00 0.00 0.00 4.52
1600 4182 0.674895 GAAAGTGACGGCAGCTGGAT 60.675 55.000 17.12 0.00 0.00 3.41
1791 4373 0.396811 AGCTCGGGTACAAGCAAAGT 59.603 50.000 14.25 0.00 41.06 2.66
1924 4510 4.143986 TGTACATGACAAGACAACCACA 57.856 40.909 0.00 0.00 34.15 4.17
2002 4591 4.142881 GCTAGCATATGCATGTCACATCTG 60.143 45.833 28.62 4.59 45.16 2.90
2003 4592 4.001652 GCTAGCATATGCATGTCACATCT 58.998 43.478 28.62 7.20 45.16 2.90
2004 4593 4.001652 AGCTAGCATATGCATGTCACATC 58.998 43.478 28.62 7.48 45.16 3.06
2005 4594 4.017177 AGCTAGCATATGCATGTCACAT 57.983 40.909 28.62 8.65 45.16 3.21
2006 4595 3.480505 AGCTAGCATATGCATGTCACA 57.519 42.857 28.62 4.63 45.16 3.58
2007 4596 5.233225 TCTAAGCTAGCATATGCATGTCAC 58.767 41.667 28.62 11.86 45.16 3.67
2008 4597 5.473066 TCTAAGCTAGCATATGCATGTCA 57.527 39.130 28.62 8.79 45.16 3.58
2058 4647 7.067859 GGTTTCATGAGAAATCTGATTGATGGA 59.932 37.037 3.22 0.00 44.87 3.41
2067 4656 6.132791 CCATCTGGTTTCATGAGAAATCTG 57.867 41.667 0.00 3.02 43.70 2.90
2085 4674 5.929992 CAGTGCATTTTTCATCAAACCATCT 59.070 36.000 0.00 0.00 0.00 2.90
2087 4676 4.998672 CCAGTGCATTTTTCATCAAACCAT 59.001 37.500 0.00 0.00 0.00 3.55
2115 4704 9.998752 TTTTTATTCCCCTTAATCACCTGATTA 57.001 29.630 3.97 3.97 42.48 1.75
2116 4705 8.909423 TTTTTATTCCCCTTAATCACCTGATT 57.091 30.769 5.85 5.85 45.77 2.57
2273 4863 4.960332 TCTCCTCTTCTTTCCCCTTCATA 58.040 43.478 0.00 0.00 0.00 2.15
2292 4882 1.734388 GCCGGCTCCTTCTCTCTCTC 61.734 65.000 22.15 0.00 0.00 3.20
2328 4918 0.572590 CTATGAGCGCGTGTTACAGC 59.427 55.000 8.43 0.00 0.00 4.40
2332 4922 0.527600 CTGCCTATGAGCGCGTGTTA 60.528 55.000 8.43 0.00 34.65 2.41
2339 4929 2.906182 TTCGCCACTGCCTATGAGCG 62.906 60.000 0.00 0.00 44.61 5.03
2340 4930 1.153369 TTCGCCACTGCCTATGAGC 60.153 57.895 0.00 0.00 0.00 4.26
2341 4931 1.156645 GCTTCGCCACTGCCTATGAG 61.157 60.000 0.00 0.00 0.00 2.90
2342 4932 1.153369 GCTTCGCCACTGCCTATGA 60.153 57.895 0.00 0.00 0.00 2.15
2343 4933 0.104855 TAGCTTCGCCACTGCCTATG 59.895 55.000 0.00 0.00 0.00 2.23
2344 4934 0.105039 GTAGCTTCGCCACTGCCTAT 59.895 55.000 0.00 0.00 0.00 2.57
2345 4935 1.254975 TGTAGCTTCGCCACTGCCTA 61.255 55.000 0.00 0.00 0.00 3.93
2346 4936 2.266055 GTAGCTTCGCCACTGCCT 59.734 61.111 0.00 0.00 0.00 4.75
2347 4937 2.047274 TGTAGCTTCGCCACTGCC 60.047 61.111 0.00 0.00 0.00 4.85
2348 4938 2.103042 CCTGTAGCTTCGCCACTGC 61.103 63.158 0.00 0.00 0.00 4.40
2349 4939 1.448540 CCCTGTAGCTTCGCCACTG 60.449 63.158 0.00 0.00 0.00 3.66
2350 4940 1.913762 ACCCTGTAGCTTCGCCACT 60.914 57.895 0.00 0.00 0.00 4.00
2351 4941 1.741770 CACCCTGTAGCTTCGCCAC 60.742 63.158 0.00 0.00 0.00 5.01
2352 4942 2.662596 CACCCTGTAGCTTCGCCA 59.337 61.111 0.00 0.00 0.00 5.69
2353 4943 2.125106 CCACCCTGTAGCTTCGCC 60.125 66.667 0.00 0.00 0.00 5.54
2354 4944 2.820037 GCCACCCTGTAGCTTCGC 60.820 66.667 0.00 0.00 0.00 4.70
2355 4945 2.125106 GGCCACCCTGTAGCTTCG 60.125 66.667 0.00 0.00 0.00 3.79
2356 4946 1.078143 CTGGCCACCCTGTAGCTTC 60.078 63.158 0.00 0.00 0.00 3.86
2357 4947 2.606587 CCTGGCCACCCTGTAGCTT 61.607 63.158 0.00 0.00 0.00 3.74
2358 4948 3.011517 CCTGGCCACCCTGTAGCT 61.012 66.667 0.00 0.00 0.00 3.32
2359 4949 4.115199 CCCTGGCCACCCTGTAGC 62.115 72.222 0.00 0.00 0.00 3.58
2360 4950 2.610859 ACCCTGGCCACCCTGTAG 60.611 66.667 0.00 0.00 0.00 2.74
2361 4951 2.933287 CACCCTGGCCACCCTGTA 60.933 66.667 0.00 0.00 0.00 2.74
2383 4973 3.645268 AAATCTCAGGGTGGGCCGC 62.645 63.158 9.05 9.05 34.97 6.53
2384 4974 1.000896 AAAATCTCAGGGTGGGCCG 60.001 57.895 0.00 0.00 34.97 6.13
2385 4975 0.972471 CCAAAATCTCAGGGTGGGCC 60.972 60.000 0.00 0.00 0.00 5.80
2386 4976 0.972471 CCCAAAATCTCAGGGTGGGC 60.972 60.000 0.00 0.00 42.44 5.36
2387 4977 3.288099 CCCAAAATCTCAGGGTGGG 57.712 57.895 0.00 0.00 42.94 4.61
2392 4982 0.035056 AGCGGACCCAAAATCTCAGG 60.035 55.000 0.00 0.00 0.00 3.86
2393 4983 1.826385 AAGCGGACCCAAAATCTCAG 58.174 50.000 0.00 0.00 0.00 3.35
2394 4984 3.644966 ATAAGCGGACCCAAAATCTCA 57.355 42.857 0.00 0.00 0.00 3.27
2395 4985 5.642491 GGTATATAAGCGGACCCAAAATCTC 59.358 44.000 0.00 0.00 0.00 2.75
2396 4986 5.309806 AGGTATATAAGCGGACCCAAAATCT 59.690 40.000 0.00 0.00 31.93 2.40
2397 4987 5.557866 AGGTATATAAGCGGACCCAAAATC 58.442 41.667 0.00 0.00 31.93 2.17
2398 4988 5.578157 AGGTATATAAGCGGACCCAAAAT 57.422 39.130 0.00 0.00 31.93 1.82
2399 4989 6.469410 CATAGGTATATAAGCGGACCCAAAA 58.531 40.000 0.00 0.00 31.93 2.44
2400 4990 5.046159 CCATAGGTATATAAGCGGACCCAAA 60.046 44.000 0.00 0.00 31.93 3.28
2401 4991 4.468510 CCATAGGTATATAAGCGGACCCAA 59.531 45.833 0.00 0.00 31.93 4.12
2402 4992 4.028131 CCATAGGTATATAAGCGGACCCA 58.972 47.826 0.00 0.00 31.93 4.51
2403 4993 4.284178 TCCATAGGTATATAAGCGGACCC 58.716 47.826 0.00 0.00 31.93 4.46
2404 4994 6.481434 AATCCATAGGTATATAAGCGGACC 57.519 41.667 0.00 0.00 0.00 4.46
2405 4995 8.788325 AAAAATCCATAGGTATATAAGCGGAC 57.212 34.615 0.00 0.00 0.00 4.79
2412 5002 9.969001 GCCCAGTTAAAAATCCATAGGTATATA 57.031 33.333 0.00 0.00 0.00 0.86
2413 5003 8.678798 AGCCCAGTTAAAAATCCATAGGTATAT 58.321 33.333 0.00 0.00 0.00 0.86
2414 5004 8.052621 AGCCCAGTTAAAAATCCATAGGTATA 57.947 34.615 0.00 0.00 0.00 1.47
2415 5005 6.922540 AGCCCAGTTAAAAATCCATAGGTAT 58.077 36.000 0.00 0.00 0.00 2.73
2416 5006 6.335781 AGCCCAGTTAAAAATCCATAGGTA 57.664 37.500 0.00 0.00 0.00 3.08
2417 5007 5.206905 AGCCCAGTTAAAAATCCATAGGT 57.793 39.130 0.00 0.00 0.00 3.08
2418 5008 6.601332 TCTAGCCCAGTTAAAAATCCATAGG 58.399 40.000 0.00 0.00 0.00 2.57
2419 5009 8.519799 TTTCTAGCCCAGTTAAAAATCCATAG 57.480 34.615 0.00 0.00 0.00 2.23
2420 5010 8.887264 TTTTCTAGCCCAGTTAAAAATCCATA 57.113 30.769 0.00 0.00 0.00 2.74
2421 5011 7.790782 TTTTCTAGCCCAGTTAAAAATCCAT 57.209 32.000 0.00 0.00 0.00 3.41
2422 5012 7.604657 TTTTTCTAGCCCAGTTAAAAATCCA 57.395 32.000 0.00 0.00 0.00 3.41
2445 5035 6.437793 TCGGTATGGTTATTGGGTCAATTTTT 59.562 34.615 0.00 0.00 35.54 1.94
2446 5036 5.952947 TCGGTATGGTTATTGGGTCAATTTT 59.047 36.000 0.00 0.00 35.54 1.82
2447 5037 5.511363 TCGGTATGGTTATTGGGTCAATTT 58.489 37.500 0.00 0.00 35.54 1.82
2448 5038 5.118729 TCGGTATGGTTATTGGGTCAATT 57.881 39.130 0.00 0.00 35.54 2.32
2449 5039 4.781775 TCGGTATGGTTATTGGGTCAAT 57.218 40.909 0.00 0.00 37.80 2.57
2450 5040 4.781775 ATCGGTATGGTTATTGGGTCAA 57.218 40.909 0.00 0.00 0.00 3.18
2451 5041 4.164413 TCAATCGGTATGGTTATTGGGTCA 59.836 41.667 0.00 0.00 31.66 4.02
2452 5042 4.514066 GTCAATCGGTATGGTTATTGGGTC 59.486 45.833 0.00 0.00 31.66 4.46
2453 5043 4.457466 GTCAATCGGTATGGTTATTGGGT 58.543 43.478 0.00 0.00 31.66 4.51
2454 5044 3.818773 GGTCAATCGGTATGGTTATTGGG 59.181 47.826 0.00 0.00 31.66 4.12
2455 5045 3.818773 GGGTCAATCGGTATGGTTATTGG 59.181 47.826 0.00 0.00 31.66 3.16
2456 5046 4.456535 TGGGTCAATCGGTATGGTTATTG 58.543 43.478 0.00 0.00 0.00 1.90
2457 5047 4.165372 ACTGGGTCAATCGGTATGGTTATT 59.835 41.667 0.00 0.00 0.00 1.40
2458 5048 3.714798 ACTGGGTCAATCGGTATGGTTAT 59.285 43.478 0.00 0.00 0.00 1.89
2459 5049 3.109151 ACTGGGTCAATCGGTATGGTTA 58.891 45.455 0.00 0.00 0.00 2.85
2460 5050 1.913419 ACTGGGTCAATCGGTATGGTT 59.087 47.619 0.00 0.00 0.00 3.67
2461 5051 1.209504 CACTGGGTCAATCGGTATGGT 59.790 52.381 0.00 0.00 0.00 3.55
2462 5052 1.484653 TCACTGGGTCAATCGGTATGG 59.515 52.381 0.00 0.00 0.00 2.74
2463 5053 2.936498 GTTCACTGGGTCAATCGGTATG 59.064 50.000 0.00 0.00 0.00 2.39
2464 5054 2.418197 CGTTCACTGGGTCAATCGGTAT 60.418 50.000 0.00 0.00 0.00 2.73
2465 5055 1.067425 CGTTCACTGGGTCAATCGGTA 60.067 52.381 0.00 0.00 0.00 4.02
2466 5056 0.320421 CGTTCACTGGGTCAATCGGT 60.320 55.000 0.00 0.00 0.00 4.69
2467 5057 1.635663 GCGTTCACTGGGTCAATCGG 61.636 60.000 0.00 0.00 0.00 4.18
2468 5058 0.948623 TGCGTTCACTGGGTCAATCG 60.949 55.000 0.00 0.00 0.00 3.34
2469 5059 0.798776 CTGCGTTCACTGGGTCAATC 59.201 55.000 0.00 0.00 0.00 2.67
2470 5060 1.237285 GCTGCGTTCACTGGGTCAAT 61.237 55.000 0.00 0.00 0.00 2.57
2471 5061 1.891919 GCTGCGTTCACTGGGTCAA 60.892 57.895 0.00 0.00 0.00 3.18
2472 5062 2.280797 GCTGCGTTCACTGGGTCA 60.281 61.111 0.00 0.00 0.00 4.02
2473 5063 3.050275 GGCTGCGTTCACTGGGTC 61.050 66.667 0.00 0.00 0.00 4.46
2474 5064 3.872603 TGGCTGCGTTCACTGGGT 61.873 61.111 0.00 0.00 0.00 4.51
2475 5065 3.357079 GTGGCTGCGTTCACTGGG 61.357 66.667 0.00 0.00 0.00 4.45
2476 5066 2.186160 TTGTGGCTGCGTTCACTGG 61.186 57.895 8.58 0.00 35.15 4.00
2477 5067 1.009675 GTTGTGGCTGCGTTCACTG 60.010 57.895 8.58 0.00 35.15 3.66
2478 5068 2.186826 GGTTGTGGCTGCGTTCACT 61.187 57.895 8.58 0.00 35.15 3.41
2479 5069 2.331451 GGTTGTGGCTGCGTTCAC 59.669 61.111 0.00 0.00 34.71 3.18
2480 5070 2.904866 GGGTTGTGGCTGCGTTCA 60.905 61.111 0.00 0.00 0.00 3.18
2481 5071 2.594592 AGGGTTGTGGCTGCGTTC 60.595 61.111 0.00 0.00 0.00 3.95
2482 5072 2.594592 GAGGGTTGTGGCTGCGTT 60.595 61.111 0.00 0.00 0.00 4.84
2483 5073 4.988598 CGAGGGTTGTGGCTGCGT 62.989 66.667 0.00 0.00 0.00 5.24
2484 5074 4.988598 ACGAGGGTTGTGGCTGCG 62.989 66.667 0.00 0.00 0.00 5.18
2485 5075 3.050275 GACGAGGGTTGTGGCTGC 61.050 66.667 0.00 0.00 0.00 5.25
2486 5076 1.374758 GAGACGAGGGTTGTGGCTG 60.375 63.158 0.00 0.00 0.00 4.85
2487 5077 2.932234 CGAGACGAGGGTTGTGGCT 61.932 63.158 0.00 0.00 0.00 4.75
2488 5078 2.432628 CGAGACGAGGGTTGTGGC 60.433 66.667 0.00 0.00 0.00 5.01
2489 5079 1.080705 GACGAGACGAGGGTTGTGG 60.081 63.158 0.00 0.00 0.00 4.17
2490 5080 1.080705 GGACGAGACGAGGGTTGTG 60.081 63.158 0.00 0.00 0.00 3.33
2491 5081 1.529948 TGGACGAGACGAGGGTTGT 60.530 57.895 0.00 0.00 0.00 3.32
2492 5082 1.080705 GTGGACGAGACGAGGGTTG 60.081 63.158 0.00 0.00 0.00 3.77
2493 5083 0.826672 AAGTGGACGAGACGAGGGTT 60.827 55.000 0.00 0.00 0.00 4.11
2494 5084 1.228490 AAGTGGACGAGACGAGGGT 60.228 57.895 0.00 0.00 0.00 4.34
2495 5085 1.507174 GAAGTGGACGAGACGAGGG 59.493 63.158 0.00 0.00 0.00 4.30
2496 5086 0.961358 AGGAAGTGGACGAGACGAGG 60.961 60.000 0.00 0.00 0.00 4.63
2497 5087 0.448593 GAGGAAGTGGACGAGACGAG 59.551 60.000 0.00 0.00 0.00 4.18
2498 5088 0.959372 GGAGGAAGTGGACGAGACGA 60.959 60.000 0.00 0.00 0.00 4.20
2499 5089 1.507174 GGAGGAAGTGGACGAGACG 59.493 63.158 0.00 0.00 0.00 4.18
2500 5090 1.242665 ACGGAGGAAGTGGACGAGAC 61.243 60.000 0.00 0.00 0.00 3.36
2501 5091 0.538977 AACGGAGGAAGTGGACGAGA 60.539 55.000 0.00 0.00 0.00 4.04
2502 5092 0.109226 GAACGGAGGAAGTGGACGAG 60.109 60.000 0.00 0.00 0.00 4.18
2503 5093 1.530013 GGAACGGAGGAAGTGGACGA 61.530 60.000 0.00 0.00 0.00 4.20
2504 5094 1.080025 GGAACGGAGGAAGTGGACG 60.080 63.158 0.00 0.00 0.00 4.79
2505 5095 0.246910 GAGGAACGGAGGAAGTGGAC 59.753 60.000 0.00 0.00 0.00 4.02
2506 5096 0.178944 TGAGGAACGGAGGAAGTGGA 60.179 55.000 0.00 0.00 0.00 4.02
2507 5097 0.905357 ATGAGGAACGGAGGAAGTGG 59.095 55.000 0.00 0.00 0.00 4.00
2508 5098 1.827969 AGATGAGGAACGGAGGAAGTG 59.172 52.381 0.00 0.00 0.00 3.16
2509 5099 2.104170 GAGATGAGGAACGGAGGAAGT 58.896 52.381 0.00 0.00 0.00 3.01
2510 5100 1.066303 CGAGATGAGGAACGGAGGAAG 59.934 57.143 0.00 0.00 0.00 3.46
2511 5101 1.103803 CGAGATGAGGAACGGAGGAA 58.896 55.000 0.00 0.00 0.00 3.36
2512 5102 0.034380 ACGAGATGAGGAACGGAGGA 60.034 55.000 0.00 0.00 0.00 3.71
2513 5103 0.382515 GACGAGATGAGGAACGGAGG 59.617 60.000 0.00 0.00 0.00 4.30
2514 5104 0.382515 GGACGAGATGAGGAACGGAG 59.617 60.000 0.00 0.00 0.00 4.63
2515 5105 0.323087 TGGACGAGATGAGGAACGGA 60.323 55.000 0.00 0.00 0.00 4.69
2516 5106 0.179134 GTGGACGAGATGAGGAACGG 60.179 60.000 0.00 0.00 0.00 4.44
2517 5107 0.811915 AGTGGACGAGATGAGGAACG 59.188 55.000 0.00 0.00 0.00 3.95
2518 5108 1.737363 GCAGTGGACGAGATGAGGAAC 60.737 57.143 0.00 0.00 0.00 3.62
2519 5109 0.532573 GCAGTGGACGAGATGAGGAA 59.467 55.000 0.00 0.00 0.00 3.36
2520 5110 0.611896 TGCAGTGGACGAGATGAGGA 60.612 55.000 0.00 0.00 0.00 3.71
2521 5111 0.179116 CTGCAGTGGACGAGATGAGG 60.179 60.000 5.25 0.00 0.00 3.86
2522 5112 0.805322 GCTGCAGTGGACGAGATGAG 60.805 60.000 16.64 0.00 0.00 2.90
2523 5113 1.216444 GCTGCAGTGGACGAGATGA 59.784 57.895 16.64 0.00 0.00 2.92
2524 5114 1.812922 GGCTGCAGTGGACGAGATG 60.813 63.158 16.64 0.00 0.00 2.90
2525 5115 2.581354 GGCTGCAGTGGACGAGAT 59.419 61.111 16.64 0.00 0.00 2.75
2526 5116 4.056125 CGGCTGCAGTGGACGAGA 62.056 66.667 16.64 0.00 0.00 4.04
2530 5120 3.426568 GAAGCGGCTGCAGTGGAC 61.427 66.667 21.93 2.78 46.23 4.02
2531 5121 3.474486 TTGAAGCGGCTGCAGTGGA 62.474 57.895 21.93 0.00 46.23 4.02
2532 5122 2.974489 CTTGAAGCGGCTGCAGTGG 61.974 63.158 21.93 8.68 46.23 4.00
2533 5123 2.559840 CTTGAAGCGGCTGCAGTG 59.440 61.111 21.93 9.67 46.23 3.66
2534 5124 3.360340 GCTTGAAGCGGCTGCAGT 61.360 61.111 21.93 6.90 46.23 4.40
2535 5125 4.112341 GGCTTGAAGCGGCTGCAG 62.112 66.667 21.93 10.11 43.62 4.41
2538 5128 3.793144 GTCGGCTTGAAGCGGCTG 61.793 66.667 18.46 5.57 43.62 4.85
2544 5134 1.448540 AGATGGCGTCGGCTTGAAG 60.449 57.895 20.29 0.00 39.81 3.02
2545 5135 1.741401 CAGATGGCGTCGGCTTGAA 60.741 57.895 20.29 0.00 39.81 2.69
2546 5136 2.125552 CAGATGGCGTCGGCTTGA 60.126 61.111 20.29 0.00 39.81 3.02
2547 5137 2.125552 TCAGATGGCGTCGGCTTG 60.126 61.111 20.29 14.68 39.81 4.01
2548 5138 2.125512 GTCAGATGGCGTCGGCTT 60.126 61.111 20.29 13.80 39.81 4.35
2549 5139 4.498520 CGTCAGATGGCGTCGGCT 62.499 66.667 20.29 5.42 38.51 5.52
2554 5144 4.148825 GAGGGCGTCAGATGGCGT 62.149 66.667 10.97 10.97 46.15 5.68
2609 5199 4.767255 GGTCTGTGCTCCGGCCAG 62.767 72.222 2.24 0.00 37.77 4.85
2615 5205 4.459089 GGAGGCGGTCTGTGCTCC 62.459 72.222 0.00 0.00 0.00 4.70
2616 5206 4.459089 GGGAGGCGGTCTGTGCTC 62.459 72.222 0.00 0.00 0.00 4.26
2619 5209 3.316573 GAAGGGGAGGCGGTCTGTG 62.317 68.421 0.00 0.00 0.00 3.66
2620 5210 3.003763 GAAGGGGAGGCGGTCTGT 61.004 66.667 0.00 0.00 0.00 3.41
2621 5211 3.787001 GGAAGGGGAGGCGGTCTG 61.787 72.222 0.00 0.00 0.00 3.51
2648 5238 3.798954 GATCCGAGGGCCAAGCGAG 62.799 68.421 6.18 1.27 0.00 5.03
2649 5239 3.849951 GATCCGAGGGCCAAGCGA 61.850 66.667 6.18 0.00 0.00 4.93
2650 5240 4.918201 GGATCCGAGGGCCAAGCG 62.918 72.222 6.18 6.38 0.00 4.68
2651 5241 3.797353 TGGATCCGAGGGCCAAGC 61.797 66.667 6.18 0.00 0.00 4.01
2652 5242 2.190578 GTGGATCCGAGGGCCAAG 59.809 66.667 6.18 0.00 32.68 3.61
2653 5243 3.407967 GGTGGATCCGAGGGCCAA 61.408 66.667 6.18 0.00 32.68 4.52
2693 5283 4.785453 GTCAAGGGAGCAGCCGGG 62.785 72.222 2.18 0.00 37.63 5.73
2694 5284 3.672295 GAGTCAAGGGAGCAGCCGG 62.672 68.421 0.00 0.00 37.63 6.13
2695 5285 2.125350 GAGTCAAGGGAGCAGCCG 60.125 66.667 0.00 0.00 37.63 5.52
2696 5286 2.125350 CGAGTCAAGGGAGCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
2697 5287 2.125350 CCGAGTCAAGGGAGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
2698 5288 1.216710 GTCCGAGTCAAGGGAGCAG 59.783 63.158 0.00 0.00 31.73 4.24
2699 5289 3.377656 GTCCGAGTCAAGGGAGCA 58.622 61.111 0.00 0.00 31.73 4.26
2700 5290 2.579738 GGTCCGAGTCAAGGGAGC 59.420 66.667 0.00 0.00 42.84 4.70
2701 5291 2.885861 CGGTCCGAGTCAAGGGAG 59.114 66.667 4.91 0.00 31.73 4.30
2702 5292 3.379445 GCGGTCCGAGTCAAGGGA 61.379 66.667 17.49 0.00 0.00 4.20
2703 5293 4.452733 GGCGGTCCGAGTCAAGGG 62.453 72.222 17.49 0.00 0.00 3.95
2704 5294 3.382832 AGGCGGTCCGAGTCAAGG 61.383 66.667 17.49 0.00 37.47 3.61
2705 5295 2.125912 CAGGCGGTCCGAGTCAAG 60.126 66.667 17.49 0.00 37.47 3.02
2706 5296 3.691342 CCAGGCGGTCCGAGTCAA 61.691 66.667 17.49 0.00 37.47 3.18
2740 5330 3.406200 CTCCACTGGAGGCAGGGG 61.406 72.222 16.57 0.00 45.43 4.79
2748 5338 3.319198 GGGCCGAACTCCACTGGA 61.319 66.667 0.00 0.00 0.00 3.86
2749 5339 3.316573 GAGGGCCGAACTCCACTGG 62.317 68.421 0.00 0.00 0.00 4.00
2750 5340 2.266055 GAGGGCCGAACTCCACTG 59.734 66.667 0.00 0.00 0.00 3.66
2751 5341 2.120718 AGAGGGCCGAACTCCACT 59.879 61.111 0.00 0.00 35.58 4.00
2752 5342 2.266055 CAGAGGGCCGAACTCCAC 59.734 66.667 0.00 0.00 35.58 4.02
2753 5343 3.706373 GCAGAGGGCCGAACTCCA 61.706 66.667 0.00 0.00 35.58 3.86
2762 5352 4.891037 GCATGGAGGGCAGAGGGC 62.891 72.222 0.00 0.00 43.74 5.19
2763 5353 2.503846 TTTGCATGGAGGGCAGAGGG 62.504 60.000 0.00 0.00 43.05 4.30
2764 5354 1.000521 TTTGCATGGAGGGCAGAGG 60.001 57.895 0.00 0.00 43.05 3.69
2765 5355 1.664321 GCTTTGCATGGAGGGCAGAG 61.664 60.000 8.20 0.00 43.95 3.35
2766 5356 1.679977 GCTTTGCATGGAGGGCAGA 60.680 57.895 8.20 0.00 43.05 4.26
2767 5357 2.718073 GGCTTTGCATGGAGGGCAG 61.718 63.158 13.41 0.00 43.05 4.85
2768 5358 1.862049 TAGGCTTTGCATGGAGGGCA 61.862 55.000 15.14 0.00 40.00 5.36
2769 5359 1.076777 TAGGCTTTGCATGGAGGGC 60.077 57.895 0.00 7.49 0.00 5.19
2770 5360 1.097547 CGTAGGCTTTGCATGGAGGG 61.098 60.000 0.00 0.00 0.00 4.30
2771 5361 1.097547 CCGTAGGCTTTGCATGGAGG 61.098 60.000 0.00 0.00 46.14 4.30
2772 5362 2.397751 CCGTAGGCTTTGCATGGAG 58.602 57.895 0.00 0.00 46.14 3.86
2773 5363 4.635769 CCGTAGGCTTTGCATGGA 57.364 55.556 0.00 0.00 46.14 3.41
2791 5381 2.874010 CTACTGAGCAGCACCGACGG 62.874 65.000 13.61 13.61 0.00 4.79
2792 5382 1.515088 CTACTGAGCAGCACCGACG 60.515 63.158 0.00 0.00 0.00 5.12
2793 5383 4.485554 CTACTGAGCAGCACCGAC 57.514 61.111 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.