Multiple sequence alignment - TraesCS2A01G248700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G248700 chr2A 100.000 2549 0 0 1 2549 372372662 372375210 0.000000e+00 4708.0
1 TraesCS2A01G248700 chr2A 98.726 157 2 0 2166 2322 372374671 372374827 1.930000e-71 279.0
2 TraesCS2A01G248700 chr2A 98.726 157 2 0 2010 2166 372374827 372374983 1.930000e-71 279.0
3 TraesCS2A01G248700 chr2D 96.429 1288 24 6 895 2166 298839708 298840989 0.000000e+00 2104.0
4 TraesCS2A01G248700 chr2D 94.786 863 32 6 1 852 298838835 298839695 0.000000e+00 1332.0
5 TraesCS2A01G248700 chr2D 93.059 389 21 4 2166 2549 298840830 298841217 4.760000e-157 564.0
6 TraesCS2A01G248700 chr2B 94.066 1264 41 14 901 2149 363485108 363483864 0.000000e+00 1888.0
7 TraesCS2A01G248700 chr2B 94.786 863 30 8 1 852 363485985 363485127 0.000000e+00 1330.0
8 TraesCS2A01G248700 chr1A 80.116 860 126 22 891 1714 584357666 584356816 1.310000e-167 599.0
9 TraesCS2A01G248700 chr1B 78.656 848 137 22 894 1713 677908676 677907845 8.080000e-145 523.0
10 TraesCS2A01G248700 chr6D 87.087 333 42 1 560 892 28655511 28655180 2.390000e-100 375.0
11 TraesCS2A01G248700 chr6D 82.883 111 12 7 2304 2410 33249326 33249433 2.700000e-15 93.5
12 TraesCS2A01G248700 chr7A 84.319 389 45 9 512 892 285822567 285822187 1.440000e-97 366.0
13 TraesCS2A01G248700 chr7A 86.585 82 6 5 2330 2410 192659176 192659253 4.520000e-13 86.1
14 TraesCS2A01G248700 chr6A 84.906 371 47 6 530 892 34031943 34032312 1.440000e-97 366.0
15 TraesCS2A01G248700 chr7D 88.435 294 30 4 560 852 538352214 538352504 4.030000e-93 351.0
16 TraesCS2A01G248700 chr7D 83.243 370 53 6 530 892 607048896 607049263 5.260000e-87 331.0
17 TraesCS2A01G248700 chrUn 82.828 396 50 12 512 892 85460403 85460011 3.140000e-89 339.0
18 TraesCS2A01G248700 chr3A 85.075 335 42 7 560 892 20245283 20245611 4.060000e-88 335.0
19 TraesCS2A01G248700 chr5A 78.841 345 33 19 512 822 57666747 57667085 2.000000e-46 196.0
20 TraesCS2A01G248700 chr1D 77.174 368 57 19 1149 1493 396166707 396167070 3.350000e-44 189.0
21 TraesCS2A01G248700 chr1D 86.905 84 8 3 2330 2411 433922564 433922646 9.710000e-15 91.6
22 TraesCS2A01G248700 chr3D 77.670 309 45 15 523 817 401882243 401882541 1.570000e-37 167.0
23 TraesCS2A01G248700 chr3B 83.478 115 16 3 2299 2411 518998123 518998236 1.250000e-18 104.0
24 TraesCS2A01G248700 chr6B 88.095 84 6 4 2354 2433 236570533 236570450 2.090000e-16 97.1
25 TraesCS2A01G248700 chr6B 82.301 113 14 6 2299 2411 674037219 674037325 2.700000e-15 93.5
26 TraesCS2A01G248700 chr4B 88.000 75 3 6 2354 2423 596646700 596646773 1.630000e-12 84.2
27 TraesCS2A01G248700 chr4A 91.379 58 3 2 2353 2409 250521053 250521109 7.560000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G248700 chr2A 372372662 372375210 2548 False 1755.333333 4708 99.150667 1 2549 3 chr2A.!!$F1 2548
1 TraesCS2A01G248700 chr2D 298838835 298841217 2382 False 1333.333333 2104 94.758000 1 2549 3 chr2D.!!$F1 2548
2 TraesCS2A01G248700 chr2B 363483864 363485985 2121 True 1609.000000 1888 94.426000 1 2149 2 chr2B.!!$R1 2148
3 TraesCS2A01G248700 chr1A 584356816 584357666 850 True 599.000000 599 80.116000 891 1714 1 chr1A.!!$R1 823
4 TraesCS2A01G248700 chr1B 677907845 677908676 831 True 523.000000 523 78.656000 894 1713 1 chr1B.!!$R1 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
874 886 0.106819 GAATGGGTGCAGATGAGCCT 60.107 55.0 0.0 0.0 31.85 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2428 2495 0.323087 GTGTGGGTGGGGGTGATAAC 60.323 60.0 0.0 0.0 0.0 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 1.202782 GCATCTGTGCCATCCATCTCT 60.203 52.381 0.00 0.00 45.76 3.10
255 256 5.565509 TCCAACAGCACCATGTATCTTTTA 58.434 37.500 0.00 0.00 31.70 1.52
288 289 2.875317 GGCCTAGTCATAAGAAGCAAGC 59.125 50.000 0.00 0.00 0.00 4.01
291 292 5.512232 GGCCTAGTCATAAGAAGCAAGCTAT 60.512 44.000 0.00 0.00 0.00 2.97
292 293 6.295349 GGCCTAGTCATAAGAAGCAAGCTATA 60.295 42.308 0.00 0.00 0.00 1.31
293 294 6.588373 GCCTAGTCATAAGAAGCAAGCTATAC 59.412 42.308 0.00 0.00 0.00 1.47
294 295 7.524698 GCCTAGTCATAAGAAGCAAGCTATACT 60.525 40.741 0.00 0.00 0.00 2.12
296 297 9.405587 CTAGTCATAAGAAGCAAGCTATACTTC 57.594 37.037 12.92 12.92 40.08 3.01
508 511 5.155905 AGCACTAGGGTAGCCAGTTATATT 58.844 41.667 14.62 0.00 0.00 1.28
512 515 7.039223 GCACTAGGGTAGCCAGTTATATTAAGA 60.039 40.741 14.62 0.00 0.00 2.10
542 547 2.124403 GGTGCCCAGGCTCATCTG 60.124 66.667 10.58 0.00 42.51 2.90
557 562 1.024579 ATCTGCACCCGCGTTTAAGG 61.025 55.000 4.92 0.00 42.97 2.69
869 881 4.524316 TTTTCTTGAATGGGTGCAGATG 57.476 40.909 0.00 0.00 0.00 2.90
870 882 3.438216 TTCTTGAATGGGTGCAGATGA 57.562 42.857 0.00 0.00 0.00 2.92
871 883 2.995283 TCTTGAATGGGTGCAGATGAG 58.005 47.619 0.00 0.00 0.00 2.90
872 884 1.404391 CTTGAATGGGTGCAGATGAGC 59.596 52.381 0.00 0.00 0.00 4.26
873 885 0.394762 TGAATGGGTGCAGATGAGCC 60.395 55.000 0.00 0.00 0.00 4.70
874 886 0.106819 GAATGGGTGCAGATGAGCCT 60.107 55.000 0.00 0.00 31.85 4.58
875 887 0.395311 AATGGGTGCAGATGAGCCTG 60.395 55.000 0.00 0.00 37.23 4.85
876 888 2.124403 GGGTGCAGATGAGCCTGG 60.124 66.667 0.00 0.00 34.82 4.45
877 889 2.124403 GGTGCAGATGAGCCTGGG 60.124 66.667 0.00 0.00 34.82 4.45
878 890 2.827642 GTGCAGATGAGCCTGGGC 60.828 66.667 3.00 3.00 42.33 5.36
889 901 2.669878 GCCTGGGCTCAAAAATGGA 58.330 52.632 4.12 0.00 38.26 3.41
1110 1131 4.131649 TCGGGTAACAGGAATGTATGTG 57.868 45.455 0.00 0.00 39.74 3.21
1111 1132 3.516300 TCGGGTAACAGGAATGTATGTGT 59.484 43.478 0.00 0.00 39.74 3.72
1112 1133 3.621268 CGGGTAACAGGAATGTATGTGTG 59.379 47.826 0.00 0.00 39.74 3.82
1113 1134 3.377172 GGGTAACAGGAATGTATGTGTGC 59.623 47.826 0.00 0.00 39.74 4.57
1114 1135 4.006989 GGTAACAGGAATGTATGTGTGCA 58.993 43.478 0.00 0.00 0.00 4.57
1170 1200 2.230660 GTGCTAACCTTCTTGGCTTGT 58.769 47.619 0.00 0.00 40.22 3.16
1214 1244 1.417517 TGATGTGGACTCTGCAGTTGT 59.582 47.619 14.67 13.83 30.63 3.32
1329 1359 2.309755 TGAACTCCTGATCCAGCCAAAT 59.690 45.455 0.00 0.00 0.00 2.32
1340 1370 6.061441 TGATCCAGCCAAATAACGATGTAAT 58.939 36.000 0.00 0.00 0.00 1.89
1563 1605 2.429610 GCCATGATCCAAAGCTGTGAAT 59.570 45.455 5.12 0.00 0.00 2.57
1738 1793 0.620556 GGCCACCTCATTCTCAAGGA 59.379 55.000 0.00 0.00 36.46 3.36
1784 1839 3.435601 GCTCATATTGGTTGAGGGTCCAT 60.436 47.826 3.16 0.00 40.77 3.41
1999 2064 1.676014 GGAACTTACATGAGCAGCCGT 60.676 52.381 0.00 0.00 0.00 5.68
2036 2101 6.202331 TGTATATACACCTGATATGGGGGAG 58.798 44.000 11.62 0.00 34.06 4.30
2151 2217 3.451178 ACCCAGCGTTGATAAGTCACTAT 59.549 43.478 0.00 0.00 33.11 2.12
2152 2218 4.081087 ACCCAGCGTTGATAAGTCACTATT 60.081 41.667 0.00 0.00 33.11 1.73
2153 2219 4.508124 CCCAGCGTTGATAAGTCACTATTC 59.492 45.833 0.00 0.00 33.11 1.75
2154 2220 5.109210 CCAGCGTTGATAAGTCACTATTCA 58.891 41.667 0.00 0.00 33.11 2.57
2155 2221 5.005779 CCAGCGTTGATAAGTCACTATTCAC 59.994 44.000 0.00 0.00 33.11 3.18
2156 2222 5.576774 CAGCGTTGATAAGTCACTATTCACA 59.423 40.000 0.00 0.00 33.11 3.58
2157 2223 5.577164 AGCGTTGATAAGTCACTATTCACAC 59.423 40.000 0.00 0.00 33.11 3.82
2158 2224 5.577164 GCGTTGATAAGTCACTATTCACACT 59.423 40.000 0.00 0.00 33.11 3.55
2159 2225 6.750501 GCGTTGATAAGTCACTATTCACACTA 59.249 38.462 0.00 0.00 33.11 2.74
2160 2226 7.274904 GCGTTGATAAGTCACTATTCACACTAA 59.725 37.037 0.00 0.00 33.11 2.24
2161 2227 9.302345 CGTTGATAAGTCACTATTCACACTAAT 57.698 33.333 0.00 0.00 33.11 1.73
2167 2233 8.553459 AAGTCACTATTCACACTAATTTGAGG 57.447 34.615 0.00 0.00 0.00 3.86
2168 2234 7.680730 AGTCACTATTCACACTAATTTGAGGT 58.319 34.615 0.00 0.00 0.00 3.85
2169 2235 7.604164 AGTCACTATTCACACTAATTTGAGGTG 59.396 37.037 9.00 9.00 37.05 4.00
2170 2236 7.387948 GTCACTATTCACACTAATTTGAGGTGT 59.612 37.037 12.76 0.00 43.74 4.16
2171 2237 8.590204 TCACTATTCACACTAATTTGAGGTGTA 58.410 33.333 12.76 7.06 41.45 2.90
2172 2238 9.383519 CACTATTCACACTAATTTGAGGTGTAT 57.616 33.333 12.76 11.68 41.45 2.29
2191 2257 6.173676 TGTATATACACCTGATATGGGGGA 57.826 41.667 11.62 0.00 34.06 4.81
2192 2258 6.202331 TGTATATACACCTGATATGGGGGAG 58.798 44.000 11.62 0.00 34.06 4.30
2193 2259 3.943269 ATACACCTGATATGGGGGAGA 57.057 47.619 1.03 0.00 34.06 3.71
2194 2260 2.823460 ACACCTGATATGGGGGAGAT 57.177 50.000 1.03 0.00 34.06 2.75
2195 2261 3.080660 ACACCTGATATGGGGGAGATT 57.919 47.619 1.03 0.00 34.06 2.40
2196 2262 4.228237 ACACCTGATATGGGGGAGATTA 57.772 45.455 1.03 0.00 34.06 1.75
2197 2263 4.577096 ACACCTGATATGGGGGAGATTAA 58.423 43.478 1.03 0.00 34.06 1.40
2198 2264 5.173246 ACACCTGATATGGGGGAGATTAAT 58.827 41.667 1.03 0.00 34.06 1.40
2199 2265 6.339220 ACACCTGATATGGGGGAGATTAATA 58.661 40.000 1.03 0.00 34.06 0.98
2200 2266 6.797540 ACACCTGATATGGGGGAGATTAATAA 59.202 38.462 1.03 0.00 34.06 1.40
2201 2267 7.465563 ACACCTGATATGGGGGAGATTAATAAT 59.534 37.037 1.03 0.00 34.06 1.28
2202 2268 8.339247 CACCTGATATGGGGGAGATTAATAATT 58.661 37.037 0.00 0.00 0.00 1.40
2203 2269 9.588432 ACCTGATATGGGGGAGATTAATAATTA 57.412 33.333 0.00 0.00 0.00 1.40
2211 2277 9.862149 TGGGGGAGATTAATAATTAAAGAAGTC 57.138 33.333 0.00 0.00 0.00 3.01
2212 2278 9.862149 GGGGGAGATTAATAATTAAAGAAGTCA 57.138 33.333 0.00 0.00 0.00 3.41
2291 2357 7.597369 ACTTATTTTCACGAATAAAAACCCAGC 59.403 33.333 0.00 0.00 32.69 4.85
2292 2358 3.546002 TTCACGAATAAAAACCCAGCG 57.454 42.857 0.00 0.00 0.00 5.18
2293 2359 2.496111 TCACGAATAAAAACCCAGCGT 58.504 42.857 0.00 0.00 0.00 5.07
2294 2360 2.879646 TCACGAATAAAAACCCAGCGTT 59.120 40.909 0.00 0.00 35.70 4.84
2295 2361 2.977169 CACGAATAAAAACCCAGCGTTG 59.023 45.455 0.00 0.00 33.93 4.10
2296 2362 2.879646 ACGAATAAAAACCCAGCGTTGA 59.120 40.909 0.00 0.00 33.93 3.18
2297 2363 3.504520 ACGAATAAAAACCCAGCGTTGAT 59.495 39.130 0.00 0.00 33.93 2.57
2298 2364 4.696402 ACGAATAAAAACCCAGCGTTGATA 59.304 37.500 0.00 0.00 33.93 2.15
2299 2365 5.181622 ACGAATAAAAACCCAGCGTTGATAA 59.818 36.000 0.00 0.00 33.93 1.75
2300 2366 5.737290 CGAATAAAAACCCAGCGTTGATAAG 59.263 40.000 0.00 0.00 33.93 1.73
2301 2367 6.584185 AATAAAAACCCAGCGTTGATAAGT 57.416 33.333 0.00 0.00 33.93 2.24
2302 2368 4.499037 AAAAACCCAGCGTTGATAAGTC 57.501 40.909 0.00 0.00 33.93 3.01
2303 2369 2.851263 AACCCAGCGTTGATAAGTCA 57.149 45.000 0.00 0.00 31.79 3.41
2304 2370 2.094762 ACCCAGCGTTGATAAGTCAC 57.905 50.000 0.00 0.00 33.11 3.67
2305 2371 1.623811 ACCCAGCGTTGATAAGTCACT 59.376 47.619 0.00 0.00 33.11 3.41
2401 2468 8.514330 ACAAGTACAATGAAAGGTCAAGTTTA 57.486 30.769 5.77 0.00 37.30 2.01
2403 2470 9.965824 CAAGTACAATGAAAGGTCAAGTTTATT 57.034 29.630 0.00 0.00 37.30 1.40
2504 2571 4.891727 CGATTCGTCGGCCCCCAG 62.892 72.222 0.00 0.00 0.00 4.45
2505 2572 3.467226 GATTCGTCGGCCCCCAGA 61.467 66.667 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.708421 CCAATCAGACAATCCAGGTTGATT 59.292 41.667 0.00 0.00 36.12 2.57
135 136 1.634973 TCAACTTGGGCCATCAGATCA 59.365 47.619 7.26 0.00 0.00 2.92
255 256 2.573462 TGACTAGGCCTCTTTGAGCATT 59.427 45.455 9.68 0.00 0.00 3.56
357 360 4.534647 AATAACATATGGCCTCCCAACA 57.465 40.909 3.32 0.00 46.14 3.33
508 511 2.417379 GCACCGAATCACTGCTCTCTTA 60.417 50.000 0.00 0.00 0.00 2.10
512 515 1.078848 GGCACCGAATCACTGCTCT 60.079 57.895 0.06 0.00 0.00 4.09
542 547 0.311477 TTTTCCTTAAACGCGGGTGC 59.689 50.000 12.47 0.00 37.91 5.01
593 605 9.165035 CCAAATTATCTACCATGCAAAATTTGT 57.835 29.630 7.60 0.00 39.46 2.83
656 668 1.028130 TGCCGAGAGCTACTCAGATG 58.972 55.000 11.93 1.60 45.14 2.90
714 726 5.467035 AATTGGGTCAAAACAGTACATGG 57.533 39.130 0.00 0.00 0.00 3.66
850 862 3.349927 CTCATCTGCACCCATTCAAGAA 58.650 45.455 0.00 0.00 0.00 2.52
851 863 2.942752 GCTCATCTGCACCCATTCAAGA 60.943 50.000 0.00 0.00 0.00 3.02
852 864 1.404391 GCTCATCTGCACCCATTCAAG 59.596 52.381 0.00 0.00 0.00 3.02
854 866 0.394762 GGCTCATCTGCACCCATTCA 60.395 55.000 0.00 0.00 34.04 2.57
855 867 0.106819 AGGCTCATCTGCACCCATTC 60.107 55.000 0.00 0.00 34.04 2.67
856 868 0.395311 CAGGCTCATCTGCACCCATT 60.395 55.000 0.00 0.00 34.04 3.16
857 869 1.226542 CAGGCTCATCTGCACCCAT 59.773 57.895 0.00 0.00 34.04 4.00
860 872 2.124403 CCCAGGCTCATCTGCACC 60.124 66.667 0.00 0.00 33.64 5.01
871 883 1.197812 ATCCATTTTTGAGCCCAGGC 58.802 50.000 0.00 0.00 42.33 4.85
872 884 3.364549 TGTATCCATTTTTGAGCCCAGG 58.635 45.455 0.00 0.00 0.00 4.45
873 885 5.361857 AGATTGTATCCATTTTTGAGCCCAG 59.638 40.000 0.00 0.00 0.00 4.45
874 886 5.271598 AGATTGTATCCATTTTTGAGCCCA 58.728 37.500 0.00 0.00 0.00 5.36
875 887 5.859205 AGATTGTATCCATTTTTGAGCCC 57.141 39.130 0.00 0.00 0.00 5.19
1006 1027 5.238583 CACACCTGGTTTTAGAGTAGAAGG 58.761 45.833 0.00 0.00 0.00 3.46
1089 1110 3.516300 ACACATACATTCCTGTTACCCGA 59.484 43.478 0.00 0.00 36.79 5.14
1110 1131 2.641559 GAAGCACCTGCACTGCAC 59.358 61.111 12.95 4.40 45.16 4.57
1111 1132 2.595463 GGAAGCACCTGCACTGCA 60.595 61.111 12.95 3.11 45.16 4.41
1214 1244 2.229543 GCACTGCCATCTTGAATGACAA 59.770 45.455 0.00 0.00 36.97 3.18
1738 1793 7.037730 AGCTCATGGACCTGATAGCTTAAATAT 60.038 37.037 0.00 0.00 0.00 1.28
1784 1839 3.287222 GCCAGCCCACAAAACAGATATA 58.713 45.455 0.00 0.00 0.00 0.86
2110 2176 7.201316 CGCTGGGTTTTTATTCGTGAAAATAAG 60.201 37.037 0.00 0.00 33.77 1.73
2168 2234 6.010201 TCTCCCCCATATCAGGTGTATATACA 60.010 42.308 11.62 11.62 0.00 2.29
2169 2235 6.441222 TCTCCCCCATATCAGGTGTATATAC 58.559 44.000 5.89 5.89 0.00 1.47
2170 2236 6.684241 TCTCCCCCATATCAGGTGTATATA 57.316 41.667 0.00 0.00 0.00 0.86
2171 2237 5.568552 TCTCCCCCATATCAGGTGTATAT 57.431 43.478 0.00 0.00 0.00 0.86
2172 2238 5.568552 ATCTCCCCCATATCAGGTGTATA 57.431 43.478 0.00 0.00 0.00 1.47
2173 2239 3.943269 TCTCCCCCATATCAGGTGTAT 57.057 47.619 0.00 0.00 0.00 2.29
2174 2240 3.943269 ATCTCCCCCATATCAGGTGTA 57.057 47.619 0.00 0.00 0.00 2.90
2175 2241 2.823460 ATCTCCCCCATATCAGGTGT 57.177 50.000 0.00 0.00 0.00 4.16
2176 2242 5.786121 ATTAATCTCCCCCATATCAGGTG 57.214 43.478 0.00 0.00 0.00 4.00
2177 2243 8.482378 AATTATTAATCTCCCCCATATCAGGT 57.518 34.615 0.00 0.00 0.00 4.00
2185 2251 9.862149 GACTTCTTTAATTATTAATCTCCCCCA 57.138 33.333 0.00 0.00 0.00 4.96
2186 2252 9.862149 TGACTTCTTTAATTATTAATCTCCCCC 57.138 33.333 0.00 0.00 0.00 5.40
2265 2331 7.597369 GCTGGGTTTTTATTCGTGAAAATAAGT 59.403 33.333 0.00 0.00 33.77 2.24
2266 2332 7.201316 CGCTGGGTTTTTATTCGTGAAAATAAG 60.201 37.037 0.00 0.00 33.77 1.73
2267 2333 6.583050 CGCTGGGTTTTTATTCGTGAAAATAA 59.417 34.615 0.00 0.00 31.02 1.40
2268 2334 6.087522 CGCTGGGTTTTTATTCGTGAAAATA 58.912 36.000 0.00 0.00 0.00 1.40
2269 2335 4.920927 CGCTGGGTTTTTATTCGTGAAAAT 59.079 37.500 0.00 0.00 0.00 1.82
2270 2336 4.202030 ACGCTGGGTTTTTATTCGTGAAAA 60.202 37.500 0.00 0.00 0.00 2.29
2271 2337 3.315749 ACGCTGGGTTTTTATTCGTGAAA 59.684 39.130 0.00 0.00 0.00 2.69
2272 2338 2.879646 ACGCTGGGTTTTTATTCGTGAA 59.120 40.909 0.00 0.00 0.00 3.18
2273 2339 2.496111 ACGCTGGGTTTTTATTCGTGA 58.504 42.857 0.00 0.00 0.00 4.35
2274 2340 2.977169 CAACGCTGGGTTTTTATTCGTG 59.023 45.455 7.43 0.00 36.49 4.35
2275 2341 2.879646 TCAACGCTGGGTTTTTATTCGT 59.120 40.909 7.43 0.00 36.49 3.85
2276 2342 3.546002 TCAACGCTGGGTTTTTATTCG 57.454 42.857 7.43 0.00 36.49 3.34
2277 2343 6.617879 ACTTATCAACGCTGGGTTTTTATTC 58.382 36.000 7.43 0.00 36.49 1.75
2278 2344 6.207810 TGACTTATCAACGCTGGGTTTTTATT 59.792 34.615 7.43 0.00 36.49 1.40
2279 2345 5.708230 TGACTTATCAACGCTGGGTTTTTAT 59.292 36.000 7.43 5.02 36.49 1.40
2280 2346 5.049267 GTGACTTATCAACGCTGGGTTTTTA 60.049 40.000 7.43 0.36 36.49 1.52
2281 2347 3.886505 TGACTTATCAACGCTGGGTTTTT 59.113 39.130 7.43 1.29 36.49 1.94
2282 2348 3.252458 GTGACTTATCAACGCTGGGTTTT 59.748 43.478 7.43 1.63 36.49 2.43
2283 2349 2.812011 GTGACTTATCAACGCTGGGTTT 59.188 45.455 7.43 0.00 36.49 3.27
2284 2350 2.038557 AGTGACTTATCAACGCTGGGTT 59.961 45.455 4.06 4.06 40.22 4.11
2285 2351 1.623811 AGTGACTTATCAACGCTGGGT 59.376 47.619 0.00 0.00 36.31 4.51
2286 2352 2.386661 AGTGACTTATCAACGCTGGG 57.613 50.000 0.00 0.00 36.31 4.45
2287 2353 5.005779 GTGAATAGTGACTTATCAACGCTGG 59.994 44.000 0.00 0.00 36.31 4.85
2288 2354 5.576774 TGTGAATAGTGACTTATCAACGCTG 59.423 40.000 0.00 0.00 36.31 5.18
2289 2355 5.577164 GTGTGAATAGTGACTTATCAACGCT 59.423 40.000 0.00 0.00 36.31 5.07
2290 2356 5.577164 AGTGTGAATAGTGACTTATCAACGC 59.423 40.000 0.00 0.00 36.31 4.84
2291 2357 8.683550 TTAGTGTGAATAGTGACTTATCAACG 57.316 34.615 0.00 0.00 36.31 4.10
2298 2364 9.725019 TGATCAAATTAGTGTGAATAGTGACTT 57.275 29.630 0.00 0.00 0.00 3.01
2299 2365 9.725019 TTGATCAAATTAGTGTGAATAGTGACT 57.275 29.630 5.45 0.00 0.00 3.41
2428 2495 0.323087 GTGTGGGTGGGGGTGATAAC 60.323 60.000 0.00 0.00 0.00 1.89
2460 2527 2.433838 CACTGCCCTCTGCTGACG 60.434 66.667 0.00 0.00 41.11 4.35
2470 2537 2.946762 GTTCGTTCAGCACTGCCC 59.053 61.111 0.00 0.00 0.00 5.36
2495 2562 2.893682 GATCAAACCTCTGGGGGCCG 62.894 65.000 0.00 0.00 40.03 6.13
2503 2570 0.391263 GTTCGGCCGATCAAACCTCT 60.391 55.000 31.56 0.00 0.00 3.69
2504 2571 1.366854 GGTTCGGCCGATCAAACCTC 61.367 60.000 30.77 13.92 38.48 3.85
2505 2572 1.376812 GGTTCGGCCGATCAAACCT 60.377 57.895 30.77 0.00 38.48 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.