Multiple sequence alignment - TraesCS2A01G248200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G248200 chr2A 100.000 6005 0 0 1 6005 369497181 369503185 0.000000e+00 11090.0
1 TraesCS2A01G248200 chr2A 89.610 154 13 3 5696 5847 342647408 342647560 6.140000e-45 193.0
2 TraesCS2A01G248200 chr2A 92.683 82 2 2 4291 4370 369501550 369501471 1.370000e-21 115.0
3 TraesCS2A01G248200 chr2D 97.298 4700 72 11 665 5333 296848418 296853093 0.000000e+00 7925.0
4 TraesCS2A01G248200 chr2D 89.891 366 30 4 102 467 296847613 296847971 1.180000e-126 464.0
5 TraesCS2A01G248200 chr2D 93.077 260 12 4 5494 5751 296853091 296853346 5.680000e-100 375.0
6 TraesCS2A01G248200 chr2D 96.203 158 2 3 5850 6005 296853336 296853491 7.720000e-64 255.0
7 TraesCS2A01G248200 chr2D 87.097 93 5 1 4291 4376 128890638 128890730 1.380000e-16 99.0
8 TraesCS2A01G248200 chr2D 87.209 86 4 1 4291 4369 142092335 142092250 2.300000e-14 91.6
9 TraesCS2A01G248200 chr2D 85.057 87 6 3 4292 4371 142092250 142092336 1.390000e-11 82.4
10 TraesCS2A01G248200 chr2D 84.706 85 7 4 4291 4369 360992170 360992086 4.990000e-11 80.5
11 TraesCS2A01G248200 chr2B 97.570 2551 44 7 1963 4502 364733137 364730594 0.000000e+00 4351.0
12 TraesCS2A01G248200 chr2B 96.707 1336 22 3 651 1967 364734580 364733248 0.000000e+00 2204.0
13 TraesCS2A01G248200 chr2B 97.800 818 13 2 4517 5333 364730374 364729561 0.000000e+00 1406.0
14 TraesCS2A01G248200 chr2B 94.615 260 8 3 5494 5751 364729563 364729308 1.210000e-106 398.0
15 TraesCS2A01G248200 chr2B 87.059 255 27 2 189 443 364734906 364734658 3.540000e-72 283.0
16 TraesCS2A01G248200 chr2B 95.513 156 5 2 5850 6005 364729318 364729165 1.290000e-61 248.0
17 TraesCS2A01G248200 chr2B 85.714 196 28 0 2275 2470 435809831 435810026 2.190000e-49 207.0
18 TraesCS2A01G248200 chr2B 88.961 154 12 4 5696 5847 368413423 368413573 1.030000e-42 185.0
19 TraesCS2A01G248200 chr2B 89.873 79 8 0 4292 4370 236843562 236843484 1.060000e-17 102.0
20 TraesCS2A01G248200 chr7A 98.810 168 2 0 5332 5499 500781925 500781758 3.520000e-77 300.0
21 TraesCS2A01G248200 chr7A 88.312 154 15 3 5696 5847 498937215 498937367 1.330000e-41 182.0
22 TraesCS2A01G248200 chr5B 94.241 191 8 3 5324 5513 681782222 681782034 7.610000e-74 289.0
23 TraesCS2A01G248200 chr5B 94.915 177 8 1 5324 5499 427931375 427931199 5.930000e-70 276.0
24 TraesCS2A01G248200 chr5B 77.444 399 68 16 3736 4132 604162215 604161837 1.010000e-52 219.0
25 TraesCS2A01G248200 chr5B 82.022 89 10 6 4291 4376 306436597 306436512 3.000000e-08 71.3
26 TraesCS2A01G248200 chr3D 97.024 168 5 0 5329 5496 375697131 375697298 3.540000e-72 283.0
27 TraesCS2A01G248200 chr3D 87.821 156 16 3 5696 5849 187836317 187836471 4.780000e-41 180.0
28 TraesCS2A01G248200 chr3D 84.615 91 6 5 4292 4374 406162589 406162499 3.860000e-12 84.2
29 TraesCS2A01G248200 chr3D 82.759 87 8 3 4292 4371 25970395 25970309 3.000000e-08 71.3
30 TraesCS2A01G248200 chr1A 96.000 175 6 1 5326 5499 233421335 233421509 3.540000e-72 283.0
31 TraesCS2A01G248200 chr1A 94.000 50 3 0 4288 4337 474227498 474227547 6.450000e-10 76.8
32 TraesCS2A01G248200 chr3B 94.944 178 9 0 5332 5509 655849421 655849598 4.580000e-71 279.0
33 TraesCS2A01G248200 chr4D 94.886 176 9 0 5329 5504 477898792 477898967 5.930000e-70 276.0
34 TraesCS2A01G248200 chr4D 86.122 245 17 8 2279 2521 258907636 258907407 1.290000e-61 248.0
35 TraesCS2A01G248200 chr4D 88.312 154 15 3 5696 5847 334164400 334164552 1.330000e-41 182.0
36 TraesCS2A01G248200 chr4D 86.047 86 5 1 4291 4369 418772414 418772499 1.070000e-12 86.1
37 TraesCS2A01G248200 chr4D 85.227 88 6 4 4289 4369 3470393 3470306 3.860000e-12 84.2
38 TraesCS2A01G248200 chr4D 84.884 86 6 1 4292 4370 320593735 320593820 4.990000e-11 80.5
39 TraesCS2A01G248200 chr4D 85.366 82 5 1 4292 4366 6688422 6688503 1.790000e-10 78.7
40 TraesCS2A01G248200 chr4D 97.778 45 1 0 4291 4335 402529016 402529060 1.790000e-10 78.7
41 TraesCS2A01G248200 chr4D 86.076 79 4 4 4292 4370 434064696 434064767 1.790000e-10 78.7
42 TraesCS2A01G248200 chr4D 87.097 62 5 3 4292 4353 268599303 268599361 3.880000e-07 67.6
43 TraesCS2A01G248200 chr6D 87.008 254 19 4 2272 2522 413987488 413987730 2.130000e-69 274.0
44 TraesCS2A01G248200 chr6D 76.688 459 95 6 1325 1777 344207918 344208370 1.670000e-60 244.0
45 TraesCS2A01G248200 chr6D 87.500 88 4 1 4291 4371 283795855 283795768 1.780000e-15 95.3
46 TraesCS2A01G248200 chr6D 88.235 85 3 2 4292 4369 403969207 403969123 1.780000e-15 95.3
47 TraesCS2A01G248200 chr6D 88.235 85 3 2 4292 4369 403969123 403969207 1.780000e-15 95.3
48 TraesCS2A01G248200 chr6D 87.356 87 4 1 4291 4370 199210327 199210413 6.410000e-15 93.5
49 TraesCS2A01G248200 chr6D 87.209 86 2 2 4291 4369 113614155 113614072 8.290000e-14 89.8
50 TraesCS2A01G248200 chr6D 96.226 53 1 1 4287 4339 68102727 68102778 1.070000e-12 86.1
51 TraesCS2A01G248200 chr6D 86.047 86 5 2 4291 4369 163831027 163830942 1.070000e-12 86.1
52 TraesCS2A01G248200 chr6D 84.884 86 6 1 4291 4369 27848307 27848392 4.990000e-11 80.5
53 TraesCS2A01G248200 chr6D 97.619 42 1 0 4291 4332 245567974 245567933 8.350000e-09 73.1
54 TraesCS2A01G248200 chr6D 82.759 87 8 2 4292 4371 36472118 36472032 3.000000e-08 71.3
55 TraesCS2A01G248200 chr6D 95.238 42 2 0 4294 4335 3296184 3296143 3.880000e-07 67.6
56 TraesCS2A01G248200 chr6D 97.297 37 1 0 4335 4371 245567939 245567975 5.020000e-06 63.9
57 TraesCS2A01G248200 chr4A 94.413 179 8 2 5329 5506 582530144 582529967 2.130000e-69 274.0
58 TraesCS2A01G248200 chr4A 86.122 245 17 8 2279 2521 242899615 242899386 1.290000e-61 248.0
59 TraesCS2A01G248200 chr6A 87.449 247 17 4 2279 2522 558973235 558973470 7.670000e-69 272.0
60 TraesCS2A01G248200 chr6A 76.688 459 95 6 1325 1777 484608490 484608942 1.670000e-60 244.0
61 TraesCS2A01G248200 chr6A 94.118 51 3 0 4285 4335 496474844 496474794 1.790000e-10 78.7
62 TraesCS2A01G248200 chr7B 93.478 184 9 2 5326 5507 675384816 675384634 2.760000e-68 270.0
63 TraesCS2A01G248200 chr7B 86.224 196 27 0 2275 2470 292454582 292454777 4.710000e-51 213.0
64 TraesCS2A01G248200 chr7B 89.744 78 6 2 4292 4369 202105443 202105518 1.380000e-16 99.0
65 TraesCS2A01G248200 chr7B 88.372 86 4 1 4292 4371 331061481 331061396 1.380000e-16 99.0
66 TraesCS2A01G248200 chr7D 75.243 618 123 26 43 645 133652079 133652681 3.570000e-67 267.0
67 TraesCS2A01G248200 chr7D 88.889 90 3 3 4287 4369 351587101 351587190 2.960000e-18 104.0
68 TraesCS2A01G248200 chr7D 88.372 86 3 4 4292 4370 351587190 351587105 4.950000e-16 97.1
69 TraesCS2A01G248200 chr6B 77.045 440 89 6 1325 1758 519720446 519720879 6.010000e-60 243.0
70 TraesCS2A01G248200 chr6B 96.226 53 1 1 4287 4339 143203598 143203649 1.070000e-12 86.1
71 TraesCS2A01G248200 chr5D 78.446 399 64 14 3736 4132 490033358 490032980 2.160000e-59 241.0
72 TraesCS2A01G248200 chr5D 89.172 157 14 3 5696 5850 529218318 529218163 6.140000e-45 193.0
73 TraesCS2A01G248200 chr5D 86.047 86 5 1 4291 4369 375582804 375582889 1.070000e-12 86.1
74 TraesCS2A01G248200 chr5D 83.133 83 6 5 4287 4369 565971937 565971863 1.080000e-07 69.4
75 TraesCS2A01G248200 chr5A 78.446 399 64 15 3736 4132 611650972 611650594 2.160000e-59 241.0
76 TraesCS2A01G248200 chr5A 86.911 191 23 2 2279 2468 502803490 502803679 4.710000e-51 213.0
77 TraesCS2A01G248200 chr5A 90.446 157 12 3 5696 5850 320214253 320214408 2.840000e-48 204.0
78 TraesCS2A01G248200 chr5A 86.905 84 5 1 4294 4371 206718826 206718743 8.290000e-14 89.8
79 TraesCS2A01G248200 chr5A 86.905 84 5 1 4294 4371 206724654 206724571 8.290000e-14 89.8
80 TraesCS2A01G248200 chr3A 88.312 154 15 3 5696 5847 585298133 585297981 1.330000e-41 182.0
81 TraesCS2A01G248200 chr3A 88.312 154 15 3 5696 5847 627965074 627964922 1.330000e-41 182.0
82 TraesCS2A01G248200 chr1D 90.000 80 6 1 4291 4370 478369510 478369587 1.060000e-17 102.0
83 TraesCS2A01G248200 chr1D 86.458 96 4 3 4281 4369 42391812 42391719 4.950000e-16 97.1
84 TraesCS2A01G248200 chr1D 86.364 88 5 1 4291 4371 406665064 406664977 8.290000e-14 89.8
85 TraesCS2A01G248200 chr1D 84.000 100 5 4 4280 4369 279945349 279945251 1.070000e-12 86.1
86 TraesCS2A01G248200 chr1D 85.227 88 6 5 4291 4371 483479191 483479278 3.860000e-12 84.2
87 TraesCS2A01G248200 chr1D 83.505 97 7 3 4291 4379 47948842 47948747 1.390000e-11 82.4
88 TraesCS2A01G248200 chr1D 97.727 44 1 0 4292 4335 470750015 470749972 6.450000e-10 76.8
89 TraesCS2A01G248200 chrUn 85.556 90 4 2 4289 4369 17053361 17053272 1.070000e-12 86.1
90 TraesCS2A01G248200 chrUn 85.882 85 5 2 4292 4369 180873867 180873951 3.860000e-12 84.2
91 TraesCS2A01G248200 chrUn 85.882 85 5 2 4292 4369 180902684 180902768 3.860000e-12 84.2
92 TraesCS2A01G248200 chrUn 85.227 88 4 2 4291 4369 346184018 346183931 1.390000e-11 82.4
93 TraesCS2A01G248200 chrUn 85.227 88 4 2 4291 4369 429713747 429713834 1.390000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G248200 chr2A 369497181 369503185 6004 False 11090.000000 11090 100.000000 1 6005 1 chr2A.!!$F2 6004
1 TraesCS2A01G248200 chr2D 296847613 296853491 5878 False 2254.750000 7925 94.117250 102 6005 4 chr2D.!!$F3 5903
2 TraesCS2A01G248200 chr2B 364729165 364734906 5741 True 1481.666667 4351 94.877333 189 6005 6 chr2B.!!$R2 5816
3 TraesCS2A01G248200 chr7D 133652079 133652681 602 False 267.000000 267 75.243000 43 645 1 chr7D.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 596 0.035630 GCTCTGGAATGCCACTCTGT 60.036 55.000 0.00 0.0 39.92 3.41 F
2225 2646 1.000060 TGTGAAATTGCTGCTCAAGGC 60.000 47.619 0.00 0.0 38.22 4.35 F
2555 2976 1.008995 CACAAAACCCGCGACCAAG 60.009 57.895 8.23 0.0 0.00 3.61 F
2996 3419 1.686355 TGGAAGTGCAACCGAAATGT 58.314 45.000 0.00 0.0 37.80 2.71 F
3372 3796 2.513738 CCCTCCATTCTGGGATGGTAAA 59.486 50.000 7.68 0.0 46.15 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2400 2821 0.307760 GATTCGGGCCATTTACAGCG 59.692 55.000 4.39 0.0 0.0 5.18 R
3303 3727 0.036010 CTCCGGCACTCCAAACATCT 60.036 55.000 0.00 0.0 0.0 2.90 R
4133 4559 2.549754 AGTGCCATGCTGCGATAAATAC 59.450 45.455 0.00 0.0 0.0 1.89 R
4962 5600 3.054802 CCCTAAGACCAAAGCTCATCTGT 60.055 47.826 0.00 0.0 0.0 3.41 R
5126 5765 1.565759 AGCATAGCAAATGACTGGGGA 59.434 47.619 3.43 0.0 0.0 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.967319 TCACTGTGGGTTCTTTGCTC 58.033 50.000 8.11 0.00 0.00 4.26
21 22 0.588252 CACTGTGGGTTCTTTGCTCG 59.412 55.000 0.00 0.00 0.00 5.03
22 23 1.166531 ACTGTGGGTTCTTTGCTCGC 61.167 55.000 0.00 0.00 0.00 5.03
23 24 1.856265 CTGTGGGTTCTTTGCTCGCC 61.856 60.000 0.00 0.00 0.00 5.54
24 25 1.600916 GTGGGTTCTTTGCTCGCCT 60.601 57.895 0.00 0.00 0.00 5.52
25 26 1.150536 TGGGTTCTTTGCTCGCCTT 59.849 52.632 0.00 0.00 0.00 4.35
26 27 1.172180 TGGGTTCTTTGCTCGCCTTG 61.172 55.000 0.00 0.00 0.00 3.61
27 28 1.081175 GGTTCTTTGCTCGCCTTGC 60.081 57.895 0.00 0.00 0.00 4.01
28 29 1.654220 GTTCTTTGCTCGCCTTGCA 59.346 52.632 0.00 0.00 38.80 4.08
29 30 0.242017 GTTCTTTGCTCGCCTTGCAT 59.758 50.000 0.00 0.00 40.34 3.96
30 31 0.241749 TTCTTTGCTCGCCTTGCATG 59.758 50.000 0.00 0.00 40.34 4.06
31 32 1.804326 CTTTGCTCGCCTTGCATGC 60.804 57.895 11.82 11.82 40.34 4.06
32 33 2.209064 CTTTGCTCGCCTTGCATGCT 62.209 55.000 20.33 0.00 40.34 3.79
33 34 2.480853 TTTGCTCGCCTTGCATGCTG 62.481 55.000 20.33 11.54 40.34 4.41
34 35 3.129502 GCTCGCCTTGCATGCTGA 61.130 61.111 20.33 6.71 0.00 4.26
35 36 2.478890 GCTCGCCTTGCATGCTGAT 61.479 57.895 20.33 0.00 0.00 2.90
36 37 2.001361 GCTCGCCTTGCATGCTGATT 62.001 55.000 20.33 0.00 0.00 2.57
37 38 1.302366 CTCGCCTTGCATGCTGATTA 58.698 50.000 20.33 0.00 0.00 1.75
38 39 1.672363 CTCGCCTTGCATGCTGATTAA 59.328 47.619 20.33 3.02 0.00 1.40
39 40 1.672363 TCGCCTTGCATGCTGATTAAG 59.328 47.619 20.33 13.10 0.00 1.85
40 41 1.672363 CGCCTTGCATGCTGATTAAGA 59.328 47.619 20.33 0.00 0.00 2.10
41 42 2.286831 CGCCTTGCATGCTGATTAAGAG 60.287 50.000 20.33 8.62 0.00 2.85
42 43 2.543238 GCCTTGCATGCTGATTAAGAGC 60.543 50.000 20.33 13.96 36.95 4.09
43 44 2.034305 CCTTGCATGCTGATTAAGAGCC 59.966 50.000 20.33 0.00 35.43 4.70
44 45 1.683943 TGCATGCTGATTAAGAGCCC 58.316 50.000 20.33 0.00 35.43 5.19
45 46 0.590195 GCATGCTGATTAAGAGCCCG 59.410 55.000 11.37 0.52 35.43 6.13
46 47 0.590195 CATGCTGATTAAGAGCCCGC 59.410 55.000 6.77 0.00 35.43 6.13
47 48 0.536006 ATGCTGATTAAGAGCCCGCC 60.536 55.000 6.77 0.00 35.43 6.13
48 49 1.894282 GCTGATTAAGAGCCCGCCC 60.894 63.158 0.00 0.00 0.00 6.13
49 50 1.526887 CTGATTAAGAGCCCGCCCA 59.473 57.895 0.00 0.00 0.00 5.36
50 51 0.815615 CTGATTAAGAGCCCGCCCAC 60.816 60.000 0.00 0.00 0.00 4.61
51 52 1.526225 GATTAAGAGCCCGCCCACC 60.526 63.158 0.00 0.00 0.00 4.61
52 53 1.984288 GATTAAGAGCCCGCCCACCT 61.984 60.000 0.00 0.00 0.00 4.00
53 54 2.270874 ATTAAGAGCCCGCCCACCTG 62.271 60.000 0.00 0.00 0.00 4.00
86 87 2.438434 GGCCGATGGGGTCAACAG 60.438 66.667 0.00 0.00 41.38 3.16
90 91 1.296392 CGATGGGGTCAACAGAGCA 59.704 57.895 0.00 0.00 0.00 4.26
96 97 2.331132 GGTCAACAGAGCAGCAGGC 61.331 63.158 0.00 0.00 45.30 4.85
122 123 4.335647 CTGCACCAACGGCTCCCT 62.336 66.667 0.00 0.00 0.00 4.20
123 124 4.329545 TGCACCAACGGCTCCCTC 62.330 66.667 0.00 0.00 0.00 4.30
191 192 1.750399 GCCTCATGATTGGCGTGGT 60.750 57.895 9.98 0.00 39.71 4.16
202 203 4.559502 GCGTGGTTGCCTCCATAT 57.440 55.556 0.41 0.00 39.81 1.78
204 205 2.024918 CGTGGTTGCCTCCATATGC 58.975 57.895 0.00 0.00 39.81 3.14
278 285 3.343421 GCGGCCACTCGAACGTTT 61.343 61.111 0.46 0.00 0.00 3.60
361 368 4.033776 CCATCACACGTGGGGCCT 62.034 66.667 19.60 0.00 32.98 5.19
454 461 1.137194 CAATCGCAGCGCCATGAAA 59.863 52.632 10.87 0.00 0.00 2.69
543 554 2.932130 GATCTGGCAACCGAGCTCCC 62.932 65.000 8.47 3.37 34.17 4.30
585 596 0.035630 GCTCTGGAATGCCACTCTGT 60.036 55.000 0.00 0.00 39.92 3.41
589 600 1.296715 GGAATGCCACTCTGTCCGT 59.703 57.895 0.00 0.00 0.00 4.69
609 620 4.119862 CGTTGTCCGACCAATCATCTAAT 58.880 43.478 0.00 0.00 39.56 1.73
647 658 1.613317 TTGCGAGGATCCATCACCGT 61.613 55.000 15.82 0.00 0.00 4.83
658 669 3.613952 ATCACCGTTGTACGCGCGA 62.614 57.895 39.36 17.83 40.91 5.87
676 963 3.064958 CGCGACACAGTAAGAGAGGAATA 59.935 47.826 0.00 0.00 0.00 1.75
709 996 2.835701 GATCCACGTCGCTTCCTGCA 62.836 60.000 0.00 0.00 43.06 4.41
811 1098 2.876645 CTCGCTTCCTCGACACGC 60.877 66.667 0.00 0.00 34.46 5.34
1191 1497 4.137872 GGCCCCGATGTCGACGAA 62.138 66.667 11.62 0.00 43.02 3.85
1332 1638 1.274703 CCCTAGGCAAGAAGCTGGGA 61.275 60.000 2.05 0.00 44.75 4.37
1380 1686 2.031465 GTCGAAAAGGCCACGGGA 59.969 61.111 5.01 0.00 0.00 5.14
1503 1809 1.407618 CACCCGAACGTGATCTCCATA 59.592 52.381 0.00 0.00 35.68 2.74
1777 2083 6.879458 GCTCTCTATCTTTTTCAAACCAGGTA 59.121 38.462 0.00 0.00 0.00 3.08
2097 2518 9.350357 CAGTAGTAATACTTAAGCGTCTTCAAA 57.650 33.333 0.00 0.00 0.00 2.69
2130 2551 4.474226 CTTGGAGACACAAGCTTGTAAC 57.526 45.455 30.67 24.65 41.09 2.50
2176 2597 7.861372 GTCGCTGCACTTTAGATAAGAGTAATA 59.139 37.037 0.00 0.00 0.00 0.98
2177 2598 8.410912 TCGCTGCACTTTAGATAAGAGTAATAA 58.589 33.333 0.00 0.00 0.00 1.40
2178 2599 9.197694 CGCTGCACTTTAGATAAGAGTAATAAT 57.802 33.333 0.00 0.00 0.00 1.28
2225 2646 1.000060 TGTGAAATTGCTGCTCAAGGC 60.000 47.619 0.00 0.00 38.22 4.35
2235 2656 1.802960 CTGCTCAAGGCTGTGTACTTG 59.197 52.381 0.00 0.00 44.09 3.16
2359 2780 1.876322 AGCTAATTCTGCGGATCAGC 58.124 50.000 11.23 11.23 42.56 4.26
2405 2826 1.582968 CTTCAGGCAATTGCGCTGT 59.417 52.632 30.87 14.85 43.26 4.40
2546 2967 3.451141 TTCTGCACAATCACAAAACCC 57.549 42.857 0.00 0.00 0.00 4.11
2555 2976 1.008995 CACAAAACCCGCGACCAAG 60.009 57.895 8.23 0.00 0.00 3.61
2996 3419 1.686355 TGGAAGTGCAACCGAAATGT 58.314 45.000 0.00 0.00 37.80 2.71
3018 3441 2.934083 GCTTCCGCCTTTCTGTTCT 58.066 52.632 0.00 0.00 0.00 3.01
3372 3796 2.513738 CCCTCCATTCTGGGATGGTAAA 59.486 50.000 7.68 0.00 46.15 2.01
3658 4084 3.734463 TCGAAGCATAAACACCACTTCA 58.266 40.909 0.00 0.00 37.24 3.02
3807 4233 8.484641 TTGATTCTGCTGTCTTAACTAGATTG 57.515 34.615 0.00 0.00 34.79 2.67
3959 4385 5.860611 TGGTTATGCGTATAGGTAATTGCT 58.139 37.500 0.00 0.00 0.00 3.91
4013 4439 6.889301 TTGAGAGAGATGTTCAAAATGCTT 57.111 33.333 0.00 0.00 0.00 3.91
4133 4559 2.665052 GGAAGCGGTAACTGTTCTAACG 59.335 50.000 0.00 0.00 32.55 3.18
4300 4726 2.838202 TCTTGACATTGGTACTCCCTCC 59.162 50.000 0.00 0.00 0.00 4.30
4306 4732 3.778629 ACATTGGTACTCCCTCCGTAAAT 59.221 43.478 0.00 0.00 0.00 1.40
4378 4811 3.087781 ACGGAGGGAGTACTGTTTACTC 58.912 50.000 0.00 2.73 42.28 2.59
4962 5600 3.073946 CACTAGGGAAAAAGGGACAAGGA 59.926 47.826 0.00 0.00 0.00 3.36
5087 5726 4.809193 AGTGCCTTACTCCTCATCAGATA 58.191 43.478 0.00 0.00 33.17 1.98
5126 5765 4.466015 ACAGTCCATTGTTTGGTCTTTGTT 59.534 37.500 0.00 0.00 46.52 2.83
5262 5901 5.942826 AGCCAACTAAAGAAGGAATTCTCTG 59.057 40.000 5.23 0.00 0.00 3.35
5280 5919 3.168292 TCTGATGGAGTGAGCAAAGAGA 58.832 45.455 0.00 0.00 0.00 3.10
5333 5972 2.717639 AGGGATCACCATGCTTGTAC 57.282 50.000 0.00 0.00 43.89 2.90
5334 5973 2.200081 AGGGATCACCATGCTTGTACT 58.800 47.619 0.00 0.00 43.89 2.73
5335 5974 2.171448 AGGGATCACCATGCTTGTACTC 59.829 50.000 0.00 0.00 43.89 2.59
5336 5975 2.565841 GGATCACCATGCTTGTACTCC 58.434 52.381 0.00 0.00 35.97 3.85
5337 5976 2.565841 GATCACCATGCTTGTACTCCC 58.434 52.381 0.00 0.00 0.00 4.30
5338 5977 1.656587 TCACCATGCTTGTACTCCCT 58.343 50.000 0.00 0.00 0.00 4.20
5339 5978 1.555075 TCACCATGCTTGTACTCCCTC 59.445 52.381 0.00 0.00 0.00 4.30
5340 5979 0.912486 ACCATGCTTGTACTCCCTCC 59.088 55.000 0.00 0.00 0.00 4.30
5341 5980 0.179073 CCATGCTTGTACTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
5342 5981 0.537188 CATGCTTGTACTCCCTCCGT 59.463 55.000 0.00 0.00 0.00 4.69
5343 5982 1.066143 CATGCTTGTACTCCCTCCGTT 60.066 52.381 0.00 0.00 0.00 4.44
5344 5983 0.606604 TGCTTGTACTCCCTCCGTTC 59.393 55.000 0.00 0.00 0.00 3.95
5345 5984 0.108281 GCTTGTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
5346 5985 1.558233 CTTGTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
5347 5986 2.731572 CTTGTACTCCCTCCGTTCCTA 58.268 52.381 0.00 0.00 0.00 2.94
5348 5987 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
5349 5988 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
5350 5989 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
5351 5990 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
5352 5991 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
5353 5992 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
5354 5993 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5355 5994 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5356 5995 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5357 5996 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5358 5997 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5359 5998 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5360 5999 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5361 6000 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
5362 6001 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
5363 6002 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
5364 6003 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
5365 6004 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
5378 6017 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
5379 6018 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
5380 6019 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
5381 6020 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
5382 6021 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
5383 6022 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
5384 6023 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
5385 6024 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
5386 6025 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
5388 6027 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
5389 6028 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
5390 6029 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
5391 6030 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
5392 6031 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
5393 6032 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
5394 6033 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
5395 6034 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
5396 6035 3.784701 AGTGACTACATACGGAGCAAG 57.215 47.619 0.00 0.00 0.00 4.01
5397 6036 3.353557 AGTGACTACATACGGAGCAAGA 58.646 45.455 0.00 0.00 0.00 3.02
5398 6037 3.954904 AGTGACTACATACGGAGCAAGAT 59.045 43.478 0.00 0.00 0.00 2.40
5399 6038 4.045104 GTGACTACATACGGAGCAAGATG 58.955 47.826 0.00 0.00 0.00 2.90
5400 6039 3.951680 TGACTACATACGGAGCAAGATGA 59.048 43.478 0.00 0.00 0.00 2.92
5401 6040 4.036852 TGACTACATACGGAGCAAGATGAG 59.963 45.833 0.00 0.00 0.00 2.90
5402 6041 3.954904 ACTACATACGGAGCAAGATGAGT 59.045 43.478 0.00 0.00 0.00 3.41
5403 6042 3.170791 ACATACGGAGCAAGATGAGTG 57.829 47.619 0.00 0.00 0.00 3.51
5404 6043 2.760650 ACATACGGAGCAAGATGAGTGA 59.239 45.455 0.00 0.00 0.00 3.41
5405 6044 3.195610 ACATACGGAGCAAGATGAGTGAA 59.804 43.478 0.00 0.00 0.00 3.18
5406 6045 4.141846 ACATACGGAGCAAGATGAGTGAAT 60.142 41.667 0.00 0.00 0.00 2.57
5407 6046 2.898705 ACGGAGCAAGATGAGTGAATC 58.101 47.619 0.00 0.00 0.00 2.52
5408 6047 2.499289 ACGGAGCAAGATGAGTGAATCT 59.501 45.455 0.00 0.00 38.59 2.40
5409 6048 3.701542 ACGGAGCAAGATGAGTGAATCTA 59.298 43.478 0.00 0.00 35.83 1.98
5410 6049 4.343526 ACGGAGCAAGATGAGTGAATCTAT 59.656 41.667 0.00 0.00 35.83 1.98
5411 6050 5.536538 ACGGAGCAAGATGAGTGAATCTATA 59.463 40.000 0.00 0.00 35.83 1.31
5412 6051 5.861251 CGGAGCAAGATGAGTGAATCTATAC 59.139 44.000 0.00 0.00 35.83 1.47
5413 6052 6.294453 CGGAGCAAGATGAGTGAATCTATACT 60.294 42.308 0.00 0.00 35.83 2.12
5414 6053 7.090173 GGAGCAAGATGAGTGAATCTATACTC 58.910 42.308 0.00 0.00 42.77 2.59
5415 6054 7.039784 GGAGCAAGATGAGTGAATCTATACTCT 60.040 40.741 0.00 0.00 42.86 3.24
5416 6055 8.932434 AGCAAGATGAGTGAATCTATACTCTA 57.068 34.615 0.00 0.00 42.86 2.43
5417 6056 9.360901 AGCAAGATGAGTGAATCTATACTCTAA 57.639 33.333 0.00 0.00 42.86 2.10
5418 6057 9.973450 GCAAGATGAGTGAATCTATACTCTAAA 57.027 33.333 0.00 0.00 42.86 1.85
5448 6087 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
5455 6094 7.482654 ACATCCGTATGTGATAGTTCATTTG 57.517 36.000 0.00 0.00 44.79 2.32
5456 6095 7.272244 ACATCCGTATGTGATAGTTCATTTGA 58.728 34.615 0.00 0.00 44.79 2.69
5457 6096 7.768582 ACATCCGTATGTGATAGTTCATTTGAA 59.231 33.333 0.00 0.00 44.79 2.69
5458 6097 8.611757 CATCCGTATGTGATAGTTCATTTGAAA 58.388 33.333 0.00 0.00 35.58 2.69
5459 6098 8.731275 TCCGTATGTGATAGTTCATTTGAAAT 57.269 30.769 0.00 0.00 35.58 2.17
5460 6099 8.826710 TCCGTATGTGATAGTTCATTTGAAATC 58.173 33.333 0.00 0.00 35.58 2.17
5461 6100 8.070171 CCGTATGTGATAGTTCATTTGAAATCC 58.930 37.037 0.00 0.00 35.58 3.01
5462 6101 8.070171 CGTATGTGATAGTTCATTTGAAATCCC 58.930 37.037 0.00 0.00 35.58 3.85
5463 6102 9.125026 GTATGTGATAGTTCATTTGAAATCCCT 57.875 33.333 0.00 0.00 35.58 4.20
5465 6104 9.699410 ATGTGATAGTTCATTTGAAATCCCTAA 57.301 29.630 0.00 0.00 35.58 2.69
5466 6105 9.527157 TGTGATAGTTCATTTGAAATCCCTAAA 57.473 29.630 0.00 0.00 35.58 1.85
5472 6111 8.923270 AGTTCATTTGAAATCCCTAAAAAGACA 58.077 29.630 0.00 0.00 35.58 3.41
5473 6112 9.541143 GTTCATTTGAAATCCCTAAAAAGACAA 57.459 29.630 0.00 0.00 35.58 3.18
5490 6129 9.908152 AAAAAGACAAATATTTAGGAACGAAGG 57.092 29.630 0.00 0.00 0.00 3.46
5491 6130 7.625828 AAGACAAATATTTAGGAACGAAGGG 57.374 36.000 0.00 0.00 0.00 3.95
5492 6131 6.954232 AGACAAATATTTAGGAACGAAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
5493 6132 7.048512 AGACAAATATTTAGGAACGAAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
5494 6133 6.718294 ACAAATATTTAGGAACGAAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
5495 6134 7.854337 ACAAATATTTAGGAACGAAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
5511 6150 6.849085 AGGGAGTAGATTGCATGTATCTAG 57.151 41.667 15.62 0.00 35.78 2.43
5551 6191 2.294074 GGAGTGAGCAGACGAGTATCT 58.706 52.381 0.00 0.00 0.00 1.98
5578 6218 5.350504 ACTACAGCTGAGCATGAATTAGT 57.649 39.130 23.35 11.21 0.00 2.24
5600 6240 2.332063 ACCCAAGTTCAGTGACAGTG 57.668 50.000 3.70 3.70 0.00 3.66
5604 6244 3.470709 CCAAGTTCAGTGACAGTGTGAT 58.529 45.455 0.00 0.00 0.00 3.06
5691 6331 1.000283 GATCGCACTGATACTCCCTGG 60.000 57.143 0.00 0.00 37.47 4.45
5692 6332 1.043116 TCGCACTGATACTCCCTGGG 61.043 60.000 6.33 6.33 0.00 4.45
5693 6333 1.043116 CGCACTGATACTCCCTGGGA 61.043 60.000 16.13 16.13 0.00 4.37
5746 6386 5.977489 TCCAATATGGACTACATACGGAG 57.023 43.478 0.00 0.00 42.67 4.63
5747 6387 4.219944 TCCAATATGGACTACATACGGAGC 59.780 45.833 0.00 0.00 42.67 4.70
5748 6388 4.021456 CCAATATGGACTACATACGGAGCA 60.021 45.833 0.00 0.00 44.41 4.26
5749 6389 5.510690 CCAATATGGACTACATACGGAGCAA 60.511 44.000 0.00 0.00 44.41 3.91
5750 6390 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
5751 6391 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
5752 6392 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
5753 6393 5.601583 TGGACTACATACGGAGCAAAATA 57.398 39.130 0.00 0.00 0.00 1.40
5754 6394 5.597806 TGGACTACATACGGAGCAAAATAG 58.402 41.667 0.00 0.00 0.00 1.73
5755 6395 5.128171 TGGACTACATACGGAGCAAAATAGT 59.872 40.000 0.00 0.00 0.00 2.12
5756 6396 5.462398 GGACTACATACGGAGCAAAATAGTG 59.538 44.000 0.00 0.00 0.00 2.74
5757 6397 6.216801 ACTACATACGGAGCAAAATAGTGA 57.783 37.500 0.00 0.00 0.00 3.41
5758 6398 6.273825 ACTACATACGGAGCAAAATAGTGAG 58.726 40.000 0.00 0.00 0.00 3.51
5759 6399 5.086104 ACATACGGAGCAAAATAGTGAGT 57.914 39.130 0.00 0.00 0.00 3.41
5760 6400 5.109903 ACATACGGAGCAAAATAGTGAGTC 58.890 41.667 0.00 0.00 0.00 3.36
5761 6401 3.963428 ACGGAGCAAAATAGTGAGTCT 57.037 42.857 0.00 0.00 0.00 3.24
5762 6402 6.096423 ACATACGGAGCAAAATAGTGAGTCTA 59.904 38.462 0.00 0.00 0.00 2.59
5763 6403 5.599999 ACGGAGCAAAATAGTGAGTCTAT 57.400 39.130 0.00 0.00 40.68 1.98
5764 6404 5.352284 ACGGAGCAAAATAGTGAGTCTATG 58.648 41.667 0.00 0.00 39.10 2.23
5765 6405 4.210120 CGGAGCAAAATAGTGAGTCTATGC 59.790 45.833 0.00 0.00 39.10 3.14
5766 6406 5.363939 GGAGCAAAATAGTGAGTCTATGCT 58.636 41.667 0.00 0.00 41.96 3.79
5767 6407 5.819901 GGAGCAAAATAGTGAGTCTATGCTT 59.180 40.000 0.00 0.00 40.43 3.91
5768 6408 6.317391 GGAGCAAAATAGTGAGTCTATGCTTT 59.683 38.462 0.00 0.00 40.43 3.51
5769 6409 7.495934 GGAGCAAAATAGTGAGTCTATGCTTTA 59.504 37.037 0.00 0.00 40.43 1.85
5770 6410 8.792830 AGCAAAATAGTGAGTCTATGCTTTAA 57.207 30.769 0.00 0.00 38.54 1.52
5771 6411 9.231297 AGCAAAATAGTGAGTCTATGCTTTAAA 57.769 29.630 0.00 0.00 38.54 1.52
5772 6412 9.840427 GCAAAATAGTGAGTCTATGCTTTAAAA 57.160 29.630 0.00 0.00 39.10 1.52
5838 6478 6.702716 AAAAAGACTTGTATTTGGGAACGA 57.297 33.333 0.00 0.00 0.00 3.85
5839 6479 6.702716 AAAAGACTTGTATTTGGGAACGAA 57.297 33.333 0.00 0.00 38.33 3.85
5840 6480 5.941948 AAGACTTGTATTTGGGAACGAAG 57.058 39.130 0.00 0.00 37.08 3.79
5841 6481 4.324267 AGACTTGTATTTGGGAACGAAGG 58.676 43.478 0.00 0.00 37.08 3.46
5842 6482 3.418047 ACTTGTATTTGGGAACGAAGGG 58.582 45.455 0.00 0.00 37.08 3.95
5843 6483 3.073356 ACTTGTATTTGGGAACGAAGGGA 59.927 43.478 0.00 0.00 37.08 4.20
5844 6484 3.343941 TGTATTTGGGAACGAAGGGAG 57.656 47.619 0.00 0.00 37.08 4.30
5845 6485 2.640826 TGTATTTGGGAACGAAGGGAGT 59.359 45.455 0.00 0.00 37.08 3.85
5846 6486 3.839490 TGTATTTGGGAACGAAGGGAGTA 59.161 43.478 0.00 0.00 37.08 2.59
5847 6487 4.472108 TGTATTTGGGAACGAAGGGAGTAT 59.528 41.667 0.00 0.00 37.08 2.12
5848 6488 5.662208 TGTATTTGGGAACGAAGGGAGTATA 59.338 40.000 0.00 0.00 37.08 1.47
5894 6534 6.294473 TGAATCTGAATGGAAGATAGAAGCC 58.706 40.000 0.00 0.00 33.17 4.35
5895 6535 6.100859 TGAATCTGAATGGAAGATAGAAGCCT 59.899 38.462 0.00 0.00 33.17 4.58
5896 6536 5.287674 TCTGAATGGAAGATAGAAGCCTG 57.712 43.478 0.00 0.00 0.00 4.85
5897 6537 4.102210 TCTGAATGGAAGATAGAAGCCTGG 59.898 45.833 0.00 0.00 0.00 4.45
5898 6538 3.782523 TGAATGGAAGATAGAAGCCTGGT 59.217 43.478 0.00 0.00 0.00 4.00
5900 6540 4.870021 ATGGAAGATAGAAGCCTGGTTT 57.130 40.909 0.00 0.00 0.00 3.27
5901 6541 4.222124 TGGAAGATAGAAGCCTGGTTTC 57.778 45.455 14.67 14.67 0.00 2.78
5905 6545 5.355630 GGAAGATAGAAGCCTGGTTTCTTTC 59.644 44.000 27.30 26.18 35.01 2.62
5950 6592 3.891366 CCCATGTTGGTCCTCATAATTCC 59.109 47.826 0.00 0.00 35.17 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.297701 GAGCAAAGAACCCACAGTGAA 58.702 47.619 0.62 0.00 0.00 3.18
1 2 1.810031 CGAGCAAAGAACCCACAGTGA 60.810 52.381 0.62 0.00 0.00 3.41
5 6 1.896660 GGCGAGCAAAGAACCCACA 60.897 57.895 0.00 0.00 0.00 4.17
6 7 1.172812 AAGGCGAGCAAAGAACCCAC 61.173 55.000 0.00 0.00 0.00 4.61
7 8 1.150536 AAGGCGAGCAAAGAACCCA 59.849 52.632 0.00 0.00 0.00 4.51
8 9 1.581447 CAAGGCGAGCAAAGAACCC 59.419 57.895 0.00 0.00 0.00 4.11
9 10 1.081175 GCAAGGCGAGCAAAGAACC 60.081 57.895 0.00 0.00 0.00 3.62
12 13 1.878070 CATGCAAGGCGAGCAAAGA 59.122 52.632 10.72 0.00 46.27 2.52
13 14 1.804326 GCATGCAAGGCGAGCAAAG 60.804 57.895 14.21 7.99 46.27 2.77
14 15 2.259204 GCATGCAAGGCGAGCAAA 59.741 55.556 14.21 0.00 46.27 3.68
22 23 2.034305 GGCTCTTAATCAGCATGCAAGG 59.966 50.000 21.98 9.12 38.77 3.61
23 24 2.034305 GGGCTCTTAATCAGCATGCAAG 59.966 50.000 21.98 14.10 38.77 4.01
24 25 2.026641 GGGCTCTTAATCAGCATGCAA 58.973 47.619 21.98 7.97 38.77 4.08
25 26 1.683943 GGGCTCTTAATCAGCATGCA 58.316 50.000 21.98 0.00 38.77 3.96
26 27 0.590195 CGGGCTCTTAATCAGCATGC 59.410 55.000 10.51 10.51 38.77 4.06
27 28 0.590195 GCGGGCTCTTAATCAGCATG 59.410 55.000 8.42 0.00 38.77 4.06
28 29 0.536006 GGCGGGCTCTTAATCAGCAT 60.536 55.000 8.42 0.00 38.77 3.79
29 30 1.153168 GGCGGGCTCTTAATCAGCA 60.153 57.895 8.42 0.00 38.77 4.41
30 31 1.894282 GGGCGGGCTCTTAATCAGC 60.894 63.158 0.26 0.00 36.02 4.26
31 32 0.815615 GTGGGCGGGCTCTTAATCAG 60.816 60.000 0.26 0.00 0.00 2.90
32 33 1.223487 GTGGGCGGGCTCTTAATCA 59.777 57.895 0.26 0.00 0.00 2.57
33 34 1.526225 GGTGGGCGGGCTCTTAATC 60.526 63.158 0.26 0.00 0.00 1.75
34 35 2.001269 AGGTGGGCGGGCTCTTAAT 61.001 57.895 0.26 0.00 0.00 1.40
35 36 2.609610 AGGTGGGCGGGCTCTTAA 60.610 61.111 0.26 0.00 0.00 1.85
36 37 3.399181 CAGGTGGGCGGGCTCTTA 61.399 66.667 0.26 0.00 0.00 2.10
47 48 4.662961 TGCACGACGAGCAGGTGG 62.663 66.667 16.10 0.00 37.02 4.61
73 74 1.028868 GCTGCTCTGTTGACCCCATC 61.029 60.000 0.00 0.00 0.00 3.51
74 75 1.001641 GCTGCTCTGTTGACCCCAT 60.002 57.895 0.00 0.00 0.00 4.00
96 97 2.115910 TTGGTGCAGGCCCAAGAG 59.884 61.111 0.00 0.00 37.05 2.85
106 107 4.329545 GAGGGAGCCGTTGGTGCA 62.330 66.667 0.00 0.00 31.08 4.57
174 175 0.452987 CAACCACGCCAATCATGAGG 59.547 55.000 0.09 0.00 0.00 3.86
191 192 1.526686 CCTGCGCATATGGAGGCAA 60.527 57.895 12.24 0.00 40.78 4.52
284 291 1.831652 GCTGACTACTGCACCAGGGT 61.832 60.000 0.00 0.00 40.01 4.34
397 404 3.537874 CGGATCGGTGTCCCCCTC 61.538 72.222 0.00 0.00 34.67 4.30
398 405 3.612115 TTCGGATCGGTGTCCCCCT 62.612 63.158 0.00 0.00 34.67 4.79
399 406 3.078836 TTCGGATCGGTGTCCCCC 61.079 66.667 0.00 0.00 34.67 5.40
400 407 2.499685 CTTCGGATCGGTGTCCCC 59.500 66.667 0.00 0.00 34.67 4.81
402 409 1.519455 CTGCTTCGGATCGGTGTCC 60.519 63.158 0.00 0.00 34.82 4.02
403 410 1.519455 CCTGCTTCGGATCGGTGTC 60.519 63.158 0.00 0.00 0.00 3.67
405 412 2.202932 CCCTGCTTCGGATCGGTG 60.203 66.667 0.00 0.00 0.00 4.94
406 413 3.470888 CCCCTGCTTCGGATCGGT 61.471 66.667 0.00 0.00 0.00 4.69
407 414 2.731571 TTCCCCTGCTTCGGATCGG 61.732 63.158 0.00 0.00 0.00 4.18
408 415 1.521681 GTTCCCCTGCTTCGGATCG 60.522 63.158 0.00 0.00 0.00 3.69
409 416 1.153147 GGTTCCCCTGCTTCGGATC 60.153 63.158 0.00 0.00 0.00 3.36
410 417 2.998949 GGTTCCCCTGCTTCGGAT 59.001 61.111 0.00 0.00 0.00 4.18
543 554 0.243907 ACGGAGACATCAGTGGTTCG 59.756 55.000 0.00 0.00 32.21 3.95
585 596 0.611200 ATGATTGGTCGGACAACGGA 59.389 50.000 10.76 0.00 44.45 4.69
589 600 6.053005 GGTTATTAGATGATTGGTCGGACAA 58.947 40.000 10.76 0.00 34.41 3.18
609 620 4.992511 GGTGGTGCGCCGTGGTTA 62.993 66.667 12.58 0.00 37.67 2.85
634 645 1.567504 CGTACAACGGTGATGGATCC 58.432 55.000 7.88 4.20 38.08 3.36
647 658 0.317687 TTACTGTGTCGCGCGTACAA 60.318 50.000 30.52 20.39 0.00 2.41
658 669 6.486056 TCTGTCTATTCCTCTCTTACTGTGT 58.514 40.000 0.00 0.00 0.00 3.72
676 963 2.745968 GTGGATCCTTCCTCTCTGTCT 58.254 52.381 14.23 0.00 43.07 3.41
709 996 2.184020 TTGCTGCTGCCACGTAGGAT 62.184 55.000 13.47 0.00 41.22 3.24
1191 1497 0.996762 AGGGAGAGGAGAGGTCGGAT 60.997 60.000 0.00 0.00 0.00 4.18
1380 1686 0.179018 ACTTGCAGGCGAACTCCTTT 60.179 50.000 0.00 0.00 33.25 3.11
1503 1809 1.076192 ATCCTCGTAAGCCCCGACT 60.076 57.895 0.00 0.00 37.18 4.18
1777 2083 0.475906 GCACCAAGGATAGAGGCCAT 59.524 55.000 5.01 0.00 0.00 4.40
1967 2388 6.485830 AATCCTAGCAGTCTAGCACAATAA 57.514 37.500 0.00 0.00 40.73 1.40
2097 2518 7.549488 GCTTGTGTCTCCAAGTTACTGTTATAT 59.451 37.037 0.00 0.00 43.03 0.86
2130 2551 7.689812 CAGCGACATAAATTAAGTTCTCACAAG 59.310 37.037 0.00 0.00 0.00 3.16
2176 2597 2.688477 TGGACAAAGAAGGGCCAAATT 58.312 42.857 6.18 0.00 0.00 1.82
2177 2598 2.397044 TGGACAAAGAAGGGCCAAAT 57.603 45.000 6.18 0.00 0.00 2.32
2178 2599 1.969923 CATGGACAAAGAAGGGCCAAA 59.030 47.619 6.18 0.00 31.53 3.28
2235 2656 1.555075 TCCATGTCTACCTTCCTGTGC 59.445 52.381 0.00 0.00 0.00 4.57
2359 2780 2.549754 CAGGTGTACTTCAGTGGCAAAG 59.450 50.000 0.00 0.00 0.00 2.77
2400 2821 0.307760 GATTCGGGCCATTTACAGCG 59.692 55.000 4.39 0.00 0.00 5.18
2405 2826 3.486383 GAATCTGGATTCGGGCCATTTA 58.514 45.455 4.39 0.00 37.97 1.40
2546 2967 2.240500 GCATAGGAGCTTGGTCGCG 61.241 63.158 0.00 0.00 34.40 5.87
2818 3241 6.998074 TCAAAAGCCATATATTTCCGAGATGT 59.002 34.615 0.00 0.00 0.00 3.06
3018 3441 2.109774 CCATTCCATAGCCAAAAGCCA 58.890 47.619 0.00 0.00 45.47 4.75
3061 3484 4.997565 ACCATGCATGTCCTTTTATTTCG 58.002 39.130 24.58 7.48 0.00 3.46
3130 3553 9.224267 GCAGTTTCCATGTCTGAATATGTATAT 57.776 33.333 8.07 0.00 0.00 0.86
3303 3727 0.036010 CTCCGGCACTCCAAACATCT 60.036 55.000 0.00 0.00 0.00 2.90
3372 3796 3.963374 TGGCTAGAAGACTAGATGCATGT 59.037 43.478 2.46 1.37 46.34 3.21
3403 3827 9.391006 GTCAATATTGTGTAAAAGGATGAGGTA 57.609 33.333 14.97 0.00 0.00 3.08
3658 4084 6.349033 GGATGGCAAAATAGTAGTTTCAACGT 60.349 38.462 0.00 0.00 0.00 3.99
3936 4362 5.699001 CAGCAATTACCTATACGCATAACCA 59.301 40.000 0.00 0.00 0.00 3.67
3959 4385 7.148289 GCAATTTCATCTTCAGACAGATTCTCA 60.148 37.037 0.00 0.00 30.50 3.27
4013 4439 4.835284 TTGGCCACTATTGTCAGTATCA 57.165 40.909 3.88 0.00 0.00 2.15
4133 4559 2.549754 AGTGCCATGCTGCGATAAATAC 59.450 45.455 0.00 0.00 0.00 1.89
4397 4830 9.574516 ACCACAGAAGTTTAGAAGAAATACAAT 57.425 29.630 0.00 0.00 0.00 2.71
4962 5600 3.054802 CCCTAAGACCAAAGCTCATCTGT 60.055 47.826 0.00 0.00 0.00 3.41
5126 5765 1.565759 AGCATAGCAAATGACTGGGGA 59.434 47.619 3.43 0.00 0.00 4.81
5262 5901 3.883830 TCTCTCTTTGCTCACTCCATC 57.116 47.619 0.00 0.00 0.00 3.51
5333 5972 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5334 5973 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5335 5974 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5336 5975 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
5337 5976 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
5338 5977 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
5339 5978 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
5352 5991 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
5353 5992 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
5354 5993 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
5355 5994 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
5356 5995 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
5357 5996 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
5358 5997 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
5359 5998 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
5360 5999 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
5361 6000 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
5362 6001 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
5363 6002 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
5364 6003 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
5365 6004 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
5366 6005 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
5367 6006 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
5368 6007 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
5369 6008 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
5370 6009 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
5371 6010 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
5372 6011 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
5373 6012 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
5374 6013 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
5375 6014 3.762288 TCTTGCTCCGTATGTAGTCACTT 59.238 43.478 0.00 0.00 0.00 3.16
5376 6015 3.353557 TCTTGCTCCGTATGTAGTCACT 58.646 45.455 0.00 0.00 0.00 3.41
5377 6016 3.777465 TCTTGCTCCGTATGTAGTCAC 57.223 47.619 0.00 0.00 0.00 3.67
5378 6017 3.951680 TCATCTTGCTCCGTATGTAGTCA 59.048 43.478 0.00 0.00 0.00 3.41
5379 6018 4.036971 ACTCATCTTGCTCCGTATGTAGTC 59.963 45.833 0.00 0.00 0.00 2.59
5380 6019 3.954904 ACTCATCTTGCTCCGTATGTAGT 59.045 43.478 0.00 0.00 0.00 2.73
5381 6020 4.036852 TCACTCATCTTGCTCCGTATGTAG 59.963 45.833 0.00 0.00 0.00 2.74
5382 6021 3.951680 TCACTCATCTTGCTCCGTATGTA 59.048 43.478 0.00 0.00 0.00 2.29
5383 6022 2.760650 TCACTCATCTTGCTCCGTATGT 59.239 45.455 0.00 0.00 0.00 2.29
5384 6023 3.443099 TCACTCATCTTGCTCCGTATG 57.557 47.619 0.00 0.00 0.00 2.39
5385 6024 4.343526 AGATTCACTCATCTTGCTCCGTAT 59.656 41.667 0.00 0.00 28.19 3.06
5386 6025 3.701542 AGATTCACTCATCTTGCTCCGTA 59.298 43.478 0.00 0.00 28.19 4.02
5387 6026 2.499289 AGATTCACTCATCTTGCTCCGT 59.501 45.455 0.00 0.00 28.19 4.69
5388 6027 3.176552 AGATTCACTCATCTTGCTCCG 57.823 47.619 0.00 0.00 28.19 4.63
5389 6028 6.991938 AGTATAGATTCACTCATCTTGCTCC 58.008 40.000 0.00 0.00 35.08 4.70
5390 6029 7.885297 AGAGTATAGATTCACTCATCTTGCTC 58.115 38.462 4.70 0.00 42.99 4.26
5391 6030 7.838079 AGAGTATAGATTCACTCATCTTGCT 57.162 36.000 4.70 0.00 42.99 3.91
5392 6031 9.973450 TTTAGAGTATAGATTCACTCATCTTGC 57.027 33.333 4.70 0.00 42.99 4.01
5422 6061 9.901172 ACTATCACATACGGATGTATATAGACA 57.099 33.333 30.73 11.02 44.82 3.41
5429 6068 9.208022 CAAATGAACTATCACATACGGATGTAT 57.792 33.333 14.23 10.02 44.82 2.29
5430 6069 8.417884 TCAAATGAACTATCACATACGGATGTA 58.582 33.333 14.23 2.61 44.82 2.29
5432 6071 7.713764 TCAAATGAACTATCACATACGGATG 57.286 36.000 5.94 5.94 38.69 3.51
5433 6072 8.731275 TTTCAAATGAACTATCACATACGGAT 57.269 30.769 0.00 0.00 38.69 4.18
5434 6073 8.731275 ATTTCAAATGAACTATCACATACGGA 57.269 30.769 0.00 0.00 38.69 4.69
5435 6074 8.070171 GGATTTCAAATGAACTATCACATACGG 58.930 37.037 9.05 0.00 38.69 4.02
5436 6075 8.070171 GGGATTTCAAATGAACTATCACATACG 58.930 37.037 9.05 0.00 38.69 3.06
5437 6076 9.125026 AGGGATTTCAAATGAACTATCACATAC 57.875 33.333 10.93 0.00 38.69 2.39
5439 6078 9.699410 TTAGGGATTTCAAATGAACTATCACAT 57.301 29.630 10.93 0.00 38.69 3.21
5440 6079 9.527157 TTTAGGGATTTCAAATGAACTATCACA 57.473 29.630 10.93 0.00 38.69 3.58
5446 6085 8.923270 TGTCTTTTTAGGGATTTCAAATGAACT 58.077 29.630 0.00 0.00 33.13 3.01
5447 6086 9.541143 TTGTCTTTTTAGGGATTTCAAATGAAC 57.459 29.630 0.00 0.00 33.13 3.18
5460 6099 9.783256 CGTTCCTAAATATTTGTCTTTTTAGGG 57.217 33.333 11.05 2.25 45.55 3.53
5464 6103 9.908152 CCTTCGTTCCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
5465 6104 8.520351 CCCTTCGTTCCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
5466 6105 7.886446 TCCCTTCGTTCCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
5467 6106 7.399634 TCCCTTCGTTCCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
5468 6107 6.954232 TCCCTTCGTTCCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
5469 6108 6.822170 ACTCCCTTCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
5470 6109 6.718294 ACTCCCTTCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
5471 6110 8.202137 TCTACTCCCTTCGTTCCTAAATATTTG 58.798 37.037 11.05 1.40 0.00 2.32
5472 6111 8.315220 TCTACTCCCTTCGTTCCTAAATATTT 57.685 34.615 5.89 5.89 0.00 1.40
5473 6112 7.909485 TCTACTCCCTTCGTTCCTAAATATT 57.091 36.000 0.00 0.00 0.00 1.28
5474 6113 8.368668 CAATCTACTCCCTTCGTTCCTAAATAT 58.631 37.037 0.00 0.00 0.00 1.28
5475 6114 7.686127 GCAATCTACTCCCTTCGTTCCTAAATA 60.686 40.741 0.00 0.00 0.00 1.40
5476 6115 6.583562 CAATCTACTCCCTTCGTTCCTAAAT 58.416 40.000 0.00 0.00 0.00 1.40
5477 6116 5.626116 GCAATCTACTCCCTTCGTTCCTAAA 60.626 44.000 0.00 0.00 0.00 1.85
5478 6117 4.142004 GCAATCTACTCCCTTCGTTCCTAA 60.142 45.833 0.00 0.00 0.00 2.69
5479 6118 3.383825 GCAATCTACTCCCTTCGTTCCTA 59.616 47.826 0.00 0.00 0.00 2.94
5480 6119 2.168728 GCAATCTACTCCCTTCGTTCCT 59.831 50.000 0.00 0.00 0.00 3.36
5481 6120 2.093658 TGCAATCTACTCCCTTCGTTCC 60.094 50.000 0.00 0.00 0.00 3.62
5482 6121 3.247006 TGCAATCTACTCCCTTCGTTC 57.753 47.619 0.00 0.00 0.00 3.95
5483 6122 3.055094 ACATGCAATCTACTCCCTTCGTT 60.055 43.478 0.00 0.00 0.00 3.85
5484 6123 2.501723 ACATGCAATCTACTCCCTTCGT 59.498 45.455 0.00 0.00 0.00 3.85
5485 6124 3.185246 ACATGCAATCTACTCCCTTCG 57.815 47.619 0.00 0.00 0.00 3.79
5486 6125 6.107901 AGATACATGCAATCTACTCCCTTC 57.892 41.667 8.94 0.00 31.88 3.46
5487 6126 6.784969 ACTAGATACATGCAATCTACTCCCTT 59.215 38.462 12.24 0.00 35.36 3.95
5488 6127 6.318913 ACTAGATACATGCAATCTACTCCCT 58.681 40.000 12.24 0.00 35.36 4.20
5489 6128 6.597832 ACTAGATACATGCAATCTACTCCC 57.402 41.667 12.24 0.00 35.36 4.30
5490 6129 8.768955 CAAAACTAGATACATGCAATCTACTCC 58.231 37.037 12.24 0.00 35.36 3.85
5491 6130 8.768955 CCAAAACTAGATACATGCAATCTACTC 58.231 37.037 12.24 0.00 35.36 2.59
5492 6131 7.227512 GCCAAAACTAGATACATGCAATCTACT 59.772 37.037 12.24 4.14 35.36 2.57
5493 6132 7.012327 TGCCAAAACTAGATACATGCAATCTAC 59.988 37.037 12.24 4.68 35.36 2.59
5494 6133 7.053498 TGCCAAAACTAGATACATGCAATCTA 58.947 34.615 14.48 14.48 35.36 1.98
5495 6134 5.887598 TGCCAAAACTAGATACATGCAATCT 59.112 36.000 13.88 13.88 37.46 2.40
5511 6150 2.412770 CCATCGCTTGAAATGCCAAAAC 59.587 45.455 0.00 0.00 32.62 2.43
5551 6191 2.831526 TCATGCTCAGCTGTAGTTACCA 59.168 45.455 14.67 4.05 0.00 3.25
5578 6218 2.769663 ACTGTCACTGAACTTGGGTACA 59.230 45.455 0.00 0.00 0.00 2.90
5645 6285 6.926272 GGTGGACATATAAAGAGCTTCACTAG 59.074 42.308 0.00 0.00 0.00 2.57
5691 6331 6.663944 AAGACTTGTATTTATGAACGCTCC 57.336 37.500 0.00 0.00 0.00 4.70
5692 6332 8.950403 AAAAAGACTTGTATTTATGAACGCTC 57.050 30.769 0.00 0.00 0.00 5.03
5741 6381 3.963428 AGACTCACTATTTTGCTCCGT 57.037 42.857 0.00 0.00 0.00 4.69
5742 6382 4.210120 GCATAGACTCACTATTTTGCTCCG 59.790 45.833 0.00 0.00 39.50 4.63
5743 6383 5.363939 AGCATAGACTCACTATTTTGCTCC 58.636 41.667 0.00 0.00 39.34 4.70
5744 6384 6.917217 AAGCATAGACTCACTATTTTGCTC 57.083 37.500 0.00 0.00 41.29 4.26
5745 6385 8.792830 TTAAAGCATAGACTCACTATTTTGCT 57.207 30.769 0.00 0.00 42.86 3.91
5746 6386 9.840427 TTTTAAAGCATAGACTCACTATTTTGC 57.160 29.630 0.00 0.00 39.50 3.68
5815 6455 6.702716 TCGTTCCCAAATACAAGTCTTTTT 57.297 33.333 0.00 0.00 0.00 1.94
5816 6456 6.238925 CCTTCGTTCCCAAATACAAGTCTTTT 60.239 38.462 0.00 0.00 0.00 2.27
5817 6457 5.240844 CCTTCGTTCCCAAATACAAGTCTTT 59.759 40.000 0.00 0.00 0.00 2.52
5818 6458 4.760204 CCTTCGTTCCCAAATACAAGTCTT 59.240 41.667 0.00 0.00 0.00 3.01
5819 6459 4.324267 CCTTCGTTCCCAAATACAAGTCT 58.676 43.478 0.00 0.00 0.00 3.24
5820 6460 3.439129 CCCTTCGTTCCCAAATACAAGTC 59.561 47.826 0.00 0.00 0.00 3.01
5821 6461 3.073356 TCCCTTCGTTCCCAAATACAAGT 59.927 43.478 0.00 0.00 0.00 3.16
5822 6462 3.681593 TCCCTTCGTTCCCAAATACAAG 58.318 45.455 0.00 0.00 0.00 3.16
5823 6463 3.073356 ACTCCCTTCGTTCCCAAATACAA 59.927 43.478 0.00 0.00 0.00 2.41
5824 6464 2.640826 ACTCCCTTCGTTCCCAAATACA 59.359 45.455 0.00 0.00 0.00 2.29
5825 6465 3.345508 ACTCCCTTCGTTCCCAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
5826 6466 6.585416 GTTATACTCCCTTCGTTCCCAAATA 58.415 40.000 0.00 0.00 0.00 1.40
5827 6467 5.434408 GTTATACTCCCTTCGTTCCCAAAT 58.566 41.667 0.00 0.00 0.00 2.32
5828 6468 4.621274 CGTTATACTCCCTTCGTTCCCAAA 60.621 45.833 0.00 0.00 0.00 3.28
5829 6469 3.119029 CGTTATACTCCCTTCGTTCCCAA 60.119 47.826 0.00 0.00 0.00 4.12
5830 6470 2.428171 CGTTATACTCCCTTCGTTCCCA 59.572 50.000 0.00 0.00 0.00 4.37
5831 6471 2.223900 CCGTTATACTCCCTTCGTTCCC 60.224 54.545 0.00 0.00 0.00 3.97
5832 6472 2.689983 TCCGTTATACTCCCTTCGTTCC 59.310 50.000 0.00 0.00 0.00 3.62
5833 6473 4.296690 CATCCGTTATACTCCCTTCGTTC 58.703 47.826 0.00 0.00 0.00 3.95
5834 6474 3.492137 GCATCCGTTATACTCCCTTCGTT 60.492 47.826 0.00 0.00 0.00 3.85
5835 6475 2.035576 GCATCCGTTATACTCCCTTCGT 59.964 50.000 0.00 0.00 0.00 3.85
5836 6476 2.035449 TGCATCCGTTATACTCCCTTCG 59.965 50.000 0.00 0.00 0.00 3.79
5837 6477 3.746045 TGCATCCGTTATACTCCCTTC 57.254 47.619 0.00 0.00 0.00 3.46
5838 6478 4.497291 TTTGCATCCGTTATACTCCCTT 57.503 40.909 0.00 0.00 0.00 3.95
5839 6479 4.141482 ACATTTGCATCCGTTATACTCCCT 60.141 41.667 0.00 0.00 0.00 4.20
5840 6480 4.024048 CACATTTGCATCCGTTATACTCCC 60.024 45.833 0.00 0.00 0.00 4.30
5841 6481 4.574828 ACACATTTGCATCCGTTATACTCC 59.425 41.667 0.00 0.00 0.00 3.85
5842 6482 5.734855 ACACATTTGCATCCGTTATACTC 57.265 39.130 0.00 0.00 0.00 2.59
5843 6483 6.346096 ACTACACATTTGCATCCGTTATACT 58.654 36.000 0.00 0.00 0.00 2.12
5844 6484 6.598753 ACTACACATTTGCATCCGTTATAC 57.401 37.500 0.00 0.00 0.00 1.47
5845 6485 7.436970 CAGTACTACACATTTGCATCCGTTATA 59.563 37.037 0.00 0.00 0.00 0.98
5846 6486 6.257849 CAGTACTACACATTTGCATCCGTTAT 59.742 38.462 0.00 0.00 0.00 1.89
5847 6487 5.579119 CAGTACTACACATTTGCATCCGTTA 59.421 40.000 0.00 0.00 0.00 3.18
5848 6488 4.391830 CAGTACTACACATTTGCATCCGTT 59.608 41.667 0.00 0.00 0.00 4.44
5894 6534 5.254339 AGCACAAGAAAGAAAGAAACCAG 57.746 39.130 0.00 0.00 0.00 4.00
5895 6535 5.410067 CAAGCACAAGAAAGAAAGAAACCA 58.590 37.500 0.00 0.00 0.00 3.67
5896 6536 4.268644 GCAAGCACAAGAAAGAAAGAAACC 59.731 41.667 0.00 0.00 0.00 3.27
5897 6537 5.105063 AGCAAGCACAAGAAAGAAAGAAAC 58.895 37.500 0.00 0.00 0.00 2.78
5898 6538 5.126061 AGAGCAAGCACAAGAAAGAAAGAAA 59.874 36.000 0.00 0.00 0.00 2.52
5900 6540 4.202441 AGAGCAAGCACAAGAAAGAAAGA 58.798 39.130 0.00 0.00 0.00 2.52
5901 6541 4.564940 AGAGCAAGCACAAGAAAGAAAG 57.435 40.909 0.00 0.00 0.00 2.62
5905 6545 5.163774 GGAATCTAGAGCAAGCACAAGAAAG 60.164 44.000 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.