Multiple sequence alignment - TraesCS2A01G247900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G247900 chr2A 100.000 4196 0 0 1 4196 367661254 367657059 0.000000e+00 7749
1 TraesCS2A01G247900 chr5D 94.961 2163 104 3 2039 4196 432976211 432978373 0.000000e+00 3386
2 TraesCS2A01G247900 chr5D 94.304 1106 62 1 445 1549 432957771 432958876 0.000000e+00 1692
3 TraesCS2A01G247900 chr5D 80.934 1285 239 6 2916 4196 482802139 482803421 0.000000e+00 1011
4 TraesCS2A01G247900 chr5D 97.041 169 5 0 1538 1706 432976027 432976195 6.870000e-73 285
5 TraesCS2A01G247900 chr6A 95.135 1480 67 5 2719 4196 27253697 27252221 0.000000e+00 2329
6 TraesCS2A01G247900 chr1D 93.495 1322 83 3 1621 2940 386667000 386668320 0.000000e+00 1962
7 TraesCS2A01G247900 chr1D 95.462 1212 52 3 2935 4145 386704272 386705481 0.000000e+00 1930
8 TraesCS2A01G247900 chr1D 94.944 1167 58 1 459 1625 386528453 386529618 0.000000e+00 1827
9 TraesCS2A01G247900 chr4D 81.591 1282 230 6 2919 4196 486780660 486779381 0.000000e+00 1055
10 TraesCS2A01G247900 chr7D 81.289 1288 234 7 2913 4196 101766248 101767532 0.000000e+00 1037
11 TraesCS2A01G247900 chr5B 81.303 1289 232 9 2913 4196 444758285 444759569 0.000000e+00 1037
12 TraesCS2A01G247900 chr6D 81.357 1282 230 9 2919 4196 464277797 464276521 0.000000e+00 1035
13 TraesCS2A01G247900 chr6B 81.148 1289 234 9 2913 4196 276767299 276768583 0.000000e+00 1026
14 TraesCS2A01G247900 chr2D 94.334 353 18 2 1 353 296388897 296388547 1.330000e-149 540
15 TraesCS2A01G247900 chr2B 94.051 353 20 1 1 353 365990539 365990890 6.170000e-148 534


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G247900 chr2A 367657059 367661254 4195 True 7749.0 7749 100.000 1 4196 1 chr2A.!!$R1 4195
1 TraesCS2A01G247900 chr5D 432976027 432978373 2346 False 1835.5 3386 96.001 1538 4196 2 chr5D.!!$F3 2658
2 TraesCS2A01G247900 chr5D 432957771 432958876 1105 False 1692.0 1692 94.304 445 1549 1 chr5D.!!$F1 1104
3 TraesCS2A01G247900 chr5D 482802139 482803421 1282 False 1011.0 1011 80.934 2916 4196 1 chr5D.!!$F2 1280
4 TraesCS2A01G247900 chr6A 27252221 27253697 1476 True 2329.0 2329 95.135 2719 4196 1 chr6A.!!$R1 1477
5 TraesCS2A01G247900 chr1D 386667000 386668320 1320 False 1962.0 1962 93.495 1621 2940 1 chr1D.!!$F2 1319
6 TraesCS2A01G247900 chr1D 386704272 386705481 1209 False 1930.0 1930 95.462 2935 4145 1 chr1D.!!$F3 1210
7 TraesCS2A01G247900 chr1D 386528453 386529618 1165 False 1827.0 1827 94.944 459 1625 1 chr1D.!!$F1 1166
8 TraesCS2A01G247900 chr4D 486779381 486780660 1279 True 1055.0 1055 81.591 2919 4196 1 chr4D.!!$R1 1277
9 TraesCS2A01G247900 chr7D 101766248 101767532 1284 False 1037.0 1037 81.289 2913 4196 1 chr7D.!!$F1 1283
10 TraesCS2A01G247900 chr5B 444758285 444759569 1284 False 1037.0 1037 81.303 2913 4196 1 chr5B.!!$F1 1283
11 TraesCS2A01G247900 chr6D 464276521 464277797 1276 True 1035.0 1035 81.357 2919 4196 1 chr6D.!!$R1 1277
12 TraesCS2A01G247900 chr6B 276767299 276768583 1284 False 1026.0 1026 81.148 2913 4196 1 chr6B.!!$F1 1283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 450 0.034896 GGGCTTGACCGTCAAAGAGA 59.965 55.0 14.74 0.0 40.62 3.10 F
1100 1101 0.250467 GTGGACCAGCAGCAGAAGAA 60.250 55.0 0.00 0.0 0.00 2.52 F
2143 2146 0.468226 TCAACACCTTCGCCTTGTCT 59.532 50.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2379 2382 0.037303 CAGGGGCTGAAAAGAGCAGA 59.963 55.000 0.00 0.0 41.08 4.26 R
2764 2767 2.235891 CCCCACAAACCCTCTTACAAC 58.764 52.381 0.00 0.0 0.00 3.32 R
3545 3549 0.696501 GGGAACTTCCTTGCCCACTA 59.303 55.000 7.77 0.0 40.39 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.701956 CAAACATGTGGCCCTAACTAAG 57.298 45.455 0.00 0.00 0.00 2.18
22 23 3.366052 AACATGTGGCCCTAACTAAGG 57.634 47.619 0.00 0.00 46.09 2.69
39 40 1.911057 AGGACAACTTAGCAAAGCCC 58.089 50.000 0.00 0.00 36.05 5.19
40 41 1.144913 AGGACAACTTAGCAAAGCCCA 59.855 47.619 0.00 0.00 36.05 5.36
41 42 1.960689 GGACAACTTAGCAAAGCCCAA 59.039 47.619 0.00 0.00 36.05 4.12
42 43 2.288213 GGACAACTTAGCAAAGCCCAAC 60.288 50.000 0.00 0.00 36.05 3.77
43 44 2.623416 GACAACTTAGCAAAGCCCAACT 59.377 45.455 0.00 0.00 36.05 3.16
44 45 3.818773 GACAACTTAGCAAAGCCCAACTA 59.181 43.478 0.00 0.00 36.05 2.24
45 46 3.821033 ACAACTTAGCAAAGCCCAACTAG 59.179 43.478 0.00 0.00 36.05 2.57
46 47 4.072131 CAACTTAGCAAAGCCCAACTAGA 58.928 43.478 0.00 0.00 36.05 2.43
47 48 4.576330 ACTTAGCAAAGCCCAACTAGAT 57.424 40.909 0.00 0.00 36.05 1.98
48 49 4.923415 ACTTAGCAAAGCCCAACTAGATT 58.077 39.130 0.00 0.00 36.05 2.40
49 50 4.702131 ACTTAGCAAAGCCCAACTAGATTG 59.298 41.667 0.00 0.00 36.05 2.67
50 51 3.439857 AGCAAAGCCCAACTAGATTGA 57.560 42.857 0.00 0.00 41.23 2.57
51 52 3.766545 AGCAAAGCCCAACTAGATTGAA 58.233 40.909 0.00 0.00 41.23 2.69
52 53 4.151883 AGCAAAGCCCAACTAGATTGAAA 58.848 39.130 0.00 0.00 41.23 2.69
53 54 4.219288 AGCAAAGCCCAACTAGATTGAAAG 59.781 41.667 0.00 0.00 41.23 2.62
54 55 4.021981 GCAAAGCCCAACTAGATTGAAAGT 60.022 41.667 0.00 0.00 41.23 2.66
55 56 5.183140 GCAAAGCCCAACTAGATTGAAAGTA 59.817 40.000 0.00 0.00 41.23 2.24
56 57 6.623767 GCAAAGCCCAACTAGATTGAAAGTAG 60.624 42.308 0.00 0.00 41.23 2.57
57 58 6.374417 AAGCCCAACTAGATTGAAAGTAGA 57.626 37.500 0.00 0.00 41.23 2.59
58 59 6.374417 AGCCCAACTAGATTGAAAGTAGAA 57.626 37.500 0.00 0.00 41.23 2.10
59 60 6.779860 AGCCCAACTAGATTGAAAGTAGAAA 58.220 36.000 0.00 0.00 41.23 2.52
60 61 7.231467 AGCCCAACTAGATTGAAAGTAGAAAA 58.769 34.615 0.00 0.00 41.23 2.29
61 62 7.391833 AGCCCAACTAGATTGAAAGTAGAAAAG 59.608 37.037 0.00 0.00 41.23 2.27
62 63 7.175119 GCCCAACTAGATTGAAAGTAGAAAAGT 59.825 37.037 0.00 0.00 41.23 2.66
63 64 9.067986 CCCAACTAGATTGAAAGTAGAAAAGTT 57.932 33.333 0.00 0.00 41.23 2.66
66 67 9.952188 AACTAGATTGAAAGTAGAAAAGTTTGC 57.048 29.630 0.00 0.00 30.60 3.68
67 68 9.343539 ACTAGATTGAAAGTAGAAAAGTTTGCT 57.656 29.630 0.71 0.71 30.60 3.91
70 71 8.907885 AGATTGAAAGTAGAAAAGTTTGCTTCT 58.092 29.630 0.17 0.00 35.99 2.85
71 72 9.521503 GATTGAAAGTAGAAAAGTTTGCTTCTT 57.478 29.630 9.16 9.16 33.89 2.52
72 73 8.911247 TTGAAAGTAGAAAAGTTTGCTTCTTC 57.089 30.769 14.07 9.42 33.89 2.87
73 74 7.480810 TGAAAGTAGAAAAGTTTGCTTCTTCC 58.519 34.615 14.07 4.45 33.89 3.46
74 75 7.122055 TGAAAGTAGAAAAGTTTGCTTCTTCCA 59.878 33.333 14.07 6.83 33.89 3.53
75 76 7.404671 AAGTAGAAAAGTTTGCTTCTTCCAA 57.595 32.000 9.16 0.00 33.89 3.53
76 77 7.588497 AGTAGAAAAGTTTGCTTCTTCCAAT 57.412 32.000 0.17 0.00 33.89 3.16
77 78 8.011844 AGTAGAAAAGTTTGCTTCTTCCAATT 57.988 30.769 0.17 0.00 33.89 2.32
78 79 9.131791 AGTAGAAAAGTTTGCTTCTTCCAATTA 57.868 29.630 0.17 0.00 33.89 1.40
79 80 9.744468 GTAGAAAAGTTTGCTTCTTCCAATTAA 57.256 29.630 0.17 0.00 33.89 1.40
81 82 9.836864 AGAAAAGTTTGCTTCTTCCAATTAAAT 57.163 25.926 0.00 0.00 33.01 1.40
82 83 9.868389 GAAAAGTTTGCTTCTTCCAATTAAATG 57.132 29.630 0.00 0.00 33.01 2.32
83 84 7.967890 AAGTTTGCTTCTTCCAATTAAATGG 57.032 32.000 2.87 2.87 42.12 3.16
84 85 8.210265 AAAGTTTGCTTCTTCCAATTAAATGGA 58.790 29.630 8.25 8.25 39.79 3.41
121 122 7.623268 ATTTTCTTTCAATGTGAGTTTACGC 57.377 32.000 0.00 0.00 0.00 4.42
122 123 4.383774 TCTTTCAATGTGAGTTTACGCG 57.616 40.909 3.53 3.53 0.00 6.01
123 124 3.805422 TCTTTCAATGTGAGTTTACGCGT 59.195 39.130 19.17 19.17 0.00 6.01
124 125 3.513462 TTCAATGTGAGTTTACGCGTG 57.487 42.857 24.59 0.00 0.00 5.34
125 126 1.795872 TCAATGTGAGTTTACGCGTGG 59.204 47.619 24.59 0.00 0.00 4.94
126 127 1.529438 CAATGTGAGTTTACGCGTGGT 59.471 47.619 24.59 2.65 0.00 4.16
127 128 1.425412 ATGTGAGTTTACGCGTGGTC 58.575 50.000 24.59 13.09 0.00 4.02
128 129 0.102663 TGTGAGTTTACGCGTGGTCA 59.897 50.000 24.59 15.60 0.00 4.02
129 130 0.782384 GTGAGTTTACGCGTGGTCAG 59.218 55.000 24.59 0.00 0.00 3.51
130 131 0.669619 TGAGTTTACGCGTGGTCAGA 59.330 50.000 24.59 0.00 0.00 3.27
131 132 1.271379 TGAGTTTACGCGTGGTCAGAT 59.729 47.619 24.59 0.39 0.00 2.90
132 133 2.488937 TGAGTTTACGCGTGGTCAGATA 59.511 45.455 24.59 0.00 0.00 1.98
133 134 3.106672 GAGTTTACGCGTGGTCAGATAG 58.893 50.000 24.59 0.00 0.00 2.08
134 135 2.159282 AGTTTACGCGTGGTCAGATAGG 60.159 50.000 24.59 0.00 0.00 2.57
135 136 1.466856 TTACGCGTGGTCAGATAGGT 58.533 50.000 24.59 0.00 0.00 3.08
136 137 1.019673 TACGCGTGGTCAGATAGGTC 58.980 55.000 24.59 0.00 0.00 3.85
137 138 1.298413 CGCGTGGTCAGATAGGTCG 60.298 63.158 0.00 0.00 0.00 4.79
138 139 1.589196 GCGTGGTCAGATAGGTCGC 60.589 63.158 0.00 0.00 35.86 5.19
139 140 1.065928 CGTGGTCAGATAGGTCGCC 59.934 63.158 0.00 0.00 0.00 5.54
140 141 1.384989 CGTGGTCAGATAGGTCGCCT 61.385 60.000 3.87 3.87 37.71 5.52
141 142 0.386113 GTGGTCAGATAGGTCGCCTC 59.614 60.000 1.46 0.00 34.61 4.70
142 143 0.259065 TGGTCAGATAGGTCGCCTCT 59.741 55.000 1.46 0.00 34.61 3.69
143 144 1.493446 TGGTCAGATAGGTCGCCTCTA 59.507 52.381 1.46 0.00 34.61 2.43
144 145 2.092049 TGGTCAGATAGGTCGCCTCTAA 60.092 50.000 1.46 0.00 34.61 2.10
145 146 2.293955 GGTCAGATAGGTCGCCTCTAAC 59.706 54.545 1.46 0.00 34.61 2.34
146 147 3.215975 GTCAGATAGGTCGCCTCTAACT 58.784 50.000 1.46 0.00 34.61 2.24
147 148 3.633065 GTCAGATAGGTCGCCTCTAACTT 59.367 47.826 1.46 0.00 34.61 2.66
148 149 3.632604 TCAGATAGGTCGCCTCTAACTTG 59.367 47.826 1.46 0.00 34.61 3.16
149 150 3.381908 CAGATAGGTCGCCTCTAACTTGT 59.618 47.826 1.46 0.00 34.61 3.16
150 151 4.579340 CAGATAGGTCGCCTCTAACTTGTA 59.421 45.833 1.46 0.00 34.61 2.41
151 152 5.241949 CAGATAGGTCGCCTCTAACTTGTAT 59.758 44.000 1.46 0.00 34.61 2.29
152 153 5.474189 AGATAGGTCGCCTCTAACTTGTATC 59.526 44.000 1.46 0.00 34.61 2.24
153 154 3.633418 AGGTCGCCTCTAACTTGTATCT 58.367 45.455 0.00 0.00 0.00 1.98
154 155 3.381908 AGGTCGCCTCTAACTTGTATCTG 59.618 47.826 0.00 0.00 0.00 2.90
155 156 3.117046 GTCGCCTCTAACTTGTATCTGC 58.883 50.000 0.00 0.00 0.00 4.26
156 157 2.100916 TCGCCTCTAACTTGTATCTGCC 59.899 50.000 0.00 0.00 0.00 4.85
157 158 2.101582 CGCCTCTAACTTGTATCTGCCT 59.898 50.000 0.00 0.00 0.00 4.75
158 159 3.723260 GCCTCTAACTTGTATCTGCCTC 58.277 50.000 0.00 0.00 0.00 4.70
159 160 3.797184 GCCTCTAACTTGTATCTGCCTCG 60.797 52.174 0.00 0.00 0.00 4.63
160 161 3.381908 CCTCTAACTTGTATCTGCCTCGT 59.618 47.826 0.00 0.00 0.00 4.18
161 162 4.579340 CCTCTAACTTGTATCTGCCTCGTA 59.421 45.833 0.00 0.00 0.00 3.43
162 163 5.278071 CCTCTAACTTGTATCTGCCTCGTAG 60.278 48.000 0.00 0.00 0.00 3.51
163 164 5.191426 TCTAACTTGTATCTGCCTCGTAGT 58.809 41.667 0.00 0.00 0.00 2.73
164 165 3.784701 ACTTGTATCTGCCTCGTAGTG 57.215 47.619 0.00 0.00 0.00 2.74
165 166 3.090037 ACTTGTATCTGCCTCGTAGTGT 58.910 45.455 0.00 0.00 0.00 3.55
166 167 3.510360 ACTTGTATCTGCCTCGTAGTGTT 59.490 43.478 0.00 0.00 0.00 3.32
167 168 3.503827 TGTATCTGCCTCGTAGTGTTG 57.496 47.619 0.00 0.00 0.00 3.33
168 169 2.194271 GTATCTGCCTCGTAGTGTTGC 58.806 52.381 0.00 0.00 0.00 4.17
169 170 0.108138 ATCTGCCTCGTAGTGTTGCC 60.108 55.000 0.00 0.00 0.00 4.52
170 171 1.005037 CTGCCTCGTAGTGTTGCCA 60.005 57.895 0.00 0.00 0.00 4.92
171 172 0.602638 CTGCCTCGTAGTGTTGCCAA 60.603 55.000 0.00 0.00 0.00 4.52
172 173 0.036164 TGCCTCGTAGTGTTGCCAAT 59.964 50.000 0.00 0.00 0.00 3.16
173 174 1.276705 TGCCTCGTAGTGTTGCCAATA 59.723 47.619 0.00 0.00 0.00 1.90
174 175 2.093181 TGCCTCGTAGTGTTGCCAATAT 60.093 45.455 0.00 0.00 0.00 1.28
175 176 2.287915 GCCTCGTAGTGTTGCCAATATG 59.712 50.000 0.00 0.00 31.09 1.78
176 177 3.531538 CCTCGTAGTGTTGCCAATATGT 58.468 45.455 0.00 0.00 31.67 2.29
177 178 3.938963 CCTCGTAGTGTTGCCAATATGTT 59.061 43.478 0.00 0.00 31.67 2.71
178 179 4.201812 CCTCGTAGTGTTGCCAATATGTTG 60.202 45.833 0.00 0.00 31.67 3.33
191 192 4.743493 CAATATGTTGGCAGTTGGTTACC 58.257 43.478 0.00 0.00 0.00 2.85
192 193 2.373335 ATGTTGGCAGTTGGTTACCA 57.627 45.000 0.00 0.00 0.00 3.25
193 194 2.145397 TGTTGGCAGTTGGTTACCAA 57.855 45.000 13.44 13.44 41.69 3.67
194 195 2.028130 TGTTGGCAGTTGGTTACCAAG 58.972 47.619 18.06 8.03 44.82 3.61
195 196 1.036707 TTGGCAGTTGGTTACCAAGC 58.963 50.000 18.06 17.37 44.82 4.01
196 197 1.169661 TGGCAGTTGGTTACCAAGCG 61.170 55.000 18.06 12.26 44.82 4.68
197 198 1.170290 GGCAGTTGGTTACCAAGCGT 61.170 55.000 18.06 2.34 44.82 5.07
198 199 0.666374 GCAGTTGGTTACCAAGCGTT 59.334 50.000 18.06 0.92 44.82 4.84
199 200 1.599419 GCAGTTGGTTACCAAGCGTTG 60.599 52.381 18.06 13.79 44.82 4.10
200 201 1.944024 CAGTTGGTTACCAAGCGTTGA 59.056 47.619 18.06 0.00 44.82 3.18
201 202 2.552315 CAGTTGGTTACCAAGCGTTGAT 59.448 45.455 18.06 0.00 44.82 2.57
202 203 2.812011 AGTTGGTTACCAAGCGTTGATC 59.188 45.455 18.06 3.05 44.82 2.92
203 204 1.816074 TGGTTACCAAGCGTTGATCC 58.184 50.000 0.00 0.00 0.00 3.36
204 205 1.072489 TGGTTACCAAGCGTTGATCCA 59.928 47.619 0.00 0.00 0.00 3.41
205 206 2.156098 GGTTACCAAGCGTTGATCCAA 58.844 47.619 0.00 0.00 0.00 3.53
206 207 2.161609 GGTTACCAAGCGTTGATCCAAG 59.838 50.000 0.00 0.00 0.00 3.61
207 208 3.071479 GTTACCAAGCGTTGATCCAAGA 58.929 45.455 0.00 0.00 0.00 3.02
208 209 2.270352 ACCAAGCGTTGATCCAAGAA 57.730 45.000 0.00 0.00 0.00 2.52
209 210 2.795329 ACCAAGCGTTGATCCAAGAAT 58.205 42.857 0.00 0.00 0.00 2.40
210 211 3.950397 ACCAAGCGTTGATCCAAGAATA 58.050 40.909 0.00 0.00 0.00 1.75
211 212 3.941483 ACCAAGCGTTGATCCAAGAATAG 59.059 43.478 0.00 0.00 0.00 1.73
212 213 4.191544 CCAAGCGTTGATCCAAGAATAGA 58.808 43.478 0.00 0.00 0.00 1.98
213 214 4.635765 CCAAGCGTTGATCCAAGAATAGAA 59.364 41.667 0.00 0.00 0.00 2.10
214 215 5.297776 CCAAGCGTTGATCCAAGAATAGAAT 59.702 40.000 0.00 0.00 0.00 2.40
215 216 6.183360 CCAAGCGTTGATCCAAGAATAGAATT 60.183 38.462 0.00 0.00 0.00 2.17
216 217 6.610741 AGCGTTGATCCAAGAATAGAATTC 57.389 37.500 0.00 0.00 0.00 2.17
217 218 5.529060 AGCGTTGATCCAAGAATAGAATTCC 59.471 40.000 0.65 0.00 0.00 3.01
218 219 5.278022 GCGTTGATCCAAGAATAGAATTCCC 60.278 44.000 0.65 0.00 0.00 3.97
219 220 5.822519 CGTTGATCCAAGAATAGAATTCCCA 59.177 40.000 0.65 0.00 0.00 4.37
220 221 6.488006 CGTTGATCCAAGAATAGAATTCCCAT 59.512 38.462 0.65 0.00 0.00 4.00
221 222 7.308229 CGTTGATCCAAGAATAGAATTCCCATC 60.308 40.741 0.65 0.00 0.00 3.51
222 223 6.546484 TGATCCAAGAATAGAATTCCCATCC 58.454 40.000 0.65 0.00 0.00 3.51
223 224 5.992564 TCCAAGAATAGAATTCCCATCCA 57.007 39.130 0.65 0.00 0.00 3.41
224 225 5.945310 TCCAAGAATAGAATTCCCATCCAG 58.055 41.667 0.65 0.00 0.00 3.86
225 226 5.075493 CCAAGAATAGAATTCCCATCCAGG 58.925 45.833 0.65 0.00 37.03 4.45
226 227 5.399497 CCAAGAATAGAATTCCCATCCAGGT 60.399 44.000 0.65 0.00 34.66 4.00
227 228 5.316158 AGAATAGAATTCCCATCCAGGTG 57.684 43.478 0.65 0.00 34.66 4.00
228 229 4.105377 AGAATAGAATTCCCATCCAGGTGG 59.895 45.833 0.65 0.00 39.05 4.61
239 240 2.554370 TCCAGGTGGGAGTAAAAACG 57.446 50.000 0.00 0.00 42.15 3.60
240 241 1.770061 TCCAGGTGGGAGTAAAAACGT 59.230 47.619 0.00 0.00 42.15 3.99
241 242 2.173143 TCCAGGTGGGAGTAAAAACGTT 59.827 45.455 0.00 0.00 42.15 3.99
242 243 2.953648 CCAGGTGGGAGTAAAAACGTTT 59.046 45.455 7.96 7.96 40.01 3.60
243 244 3.243267 CCAGGTGGGAGTAAAAACGTTTG 60.243 47.826 15.46 0.00 40.01 2.93
244 245 3.628487 CAGGTGGGAGTAAAAACGTTTGA 59.372 43.478 15.46 2.82 0.00 2.69
245 246 4.277423 CAGGTGGGAGTAAAAACGTTTGAT 59.723 41.667 15.46 9.46 0.00 2.57
246 247 4.517832 AGGTGGGAGTAAAAACGTTTGATC 59.482 41.667 15.46 9.94 0.00 2.92
247 248 4.276431 GGTGGGAGTAAAAACGTTTGATCA 59.724 41.667 15.46 4.13 0.00 2.92
248 249 5.209977 GTGGGAGTAAAAACGTTTGATCAC 58.790 41.667 15.46 11.58 0.00 3.06
249 250 4.276431 TGGGAGTAAAAACGTTTGATCACC 59.724 41.667 15.46 14.70 0.00 4.02
250 251 4.517832 GGGAGTAAAAACGTTTGATCACCT 59.482 41.667 15.46 5.08 0.00 4.00
251 252 5.009310 GGGAGTAAAAACGTTTGATCACCTT 59.991 40.000 15.46 5.72 0.00 3.50
252 253 5.912955 GGAGTAAAAACGTTTGATCACCTTG 59.087 40.000 15.46 0.00 0.00 3.61
253 254 5.827666 AGTAAAAACGTTTGATCACCTTGG 58.172 37.500 15.46 0.00 0.00 3.61
254 255 2.793278 AAACGTTTGATCACCTTGGC 57.207 45.000 13.81 0.00 0.00 4.52
255 256 1.981256 AACGTTTGATCACCTTGGCT 58.019 45.000 0.00 0.00 0.00 4.75
256 257 2.851263 ACGTTTGATCACCTTGGCTA 57.149 45.000 0.00 0.00 0.00 3.93
257 258 3.350219 ACGTTTGATCACCTTGGCTAT 57.650 42.857 0.00 0.00 0.00 2.97
258 259 3.009723 ACGTTTGATCACCTTGGCTATG 58.990 45.455 0.00 0.00 0.00 2.23
259 260 3.009723 CGTTTGATCACCTTGGCTATGT 58.990 45.455 0.00 0.00 0.00 2.29
260 261 4.188462 CGTTTGATCACCTTGGCTATGTA 58.812 43.478 0.00 0.00 0.00 2.29
261 262 4.271049 CGTTTGATCACCTTGGCTATGTAG 59.729 45.833 0.00 0.00 0.00 2.74
262 263 4.422073 TTGATCACCTTGGCTATGTAGG 57.578 45.455 0.00 0.00 35.14 3.18
263 264 3.653164 TGATCACCTTGGCTATGTAGGA 58.347 45.455 0.00 0.00 33.21 2.94
264 265 4.234550 TGATCACCTTGGCTATGTAGGAT 58.765 43.478 0.00 0.00 33.21 3.24
265 266 4.660303 TGATCACCTTGGCTATGTAGGATT 59.340 41.667 0.00 0.00 33.21 3.01
266 267 4.422073 TCACCTTGGCTATGTAGGATTG 57.578 45.455 0.00 0.00 33.21 2.67
267 268 4.037222 TCACCTTGGCTATGTAGGATTGA 58.963 43.478 0.00 0.00 33.21 2.57
268 269 4.660303 TCACCTTGGCTATGTAGGATTGAT 59.340 41.667 0.00 0.00 33.21 2.57
269 270 5.132648 TCACCTTGGCTATGTAGGATTGATT 59.867 40.000 0.00 0.00 33.21 2.57
270 271 5.829924 CACCTTGGCTATGTAGGATTGATTT 59.170 40.000 0.00 0.00 33.21 2.17
271 272 5.829924 ACCTTGGCTATGTAGGATTGATTTG 59.170 40.000 0.00 0.00 33.21 2.32
272 273 5.829924 CCTTGGCTATGTAGGATTGATTTGT 59.170 40.000 0.00 0.00 0.00 2.83
273 274 6.322201 CCTTGGCTATGTAGGATTGATTTGTT 59.678 38.462 0.00 0.00 0.00 2.83
274 275 6.942532 TGGCTATGTAGGATTGATTTGTTC 57.057 37.500 0.00 0.00 0.00 3.18
275 276 6.662755 TGGCTATGTAGGATTGATTTGTTCT 58.337 36.000 0.00 0.00 0.00 3.01
276 277 7.118723 TGGCTATGTAGGATTGATTTGTTCTT 58.881 34.615 0.00 0.00 0.00 2.52
277 278 7.615365 TGGCTATGTAGGATTGATTTGTTCTTT 59.385 33.333 0.00 0.00 0.00 2.52
278 279 8.470002 GGCTATGTAGGATTGATTTGTTCTTTT 58.530 33.333 0.00 0.00 0.00 2.27
279 280 9.294030 GCTATGTAGGATTGATTTGTTCTTTTG 57.706 33.333 0.00 0.00 0.00 2.44
280 281 9.294030 CTATGTAGGATTGATTTGTTCTTTTGC 57.706 33.333 0.00 0.00 0.00 3.68
281 282 7.288810 TGTAGGATTGATTTGTTCTTTTGCT 57.711 32.000 0.00 0.00 0.00 3.91
282 283 8.402798 TGTAGGATTGATTTGTTCTTTTGCTA 57.597 30.769 0.00 0.00 0.00 3.49
283 284 8.855110 TGTAGGATTGATTTGTTCTTTTGCTAA 58.145 29.630 0.00 0.00 0.00 3.09
284 285 9.860898 GTAGGATTGATTTGTTCTTTTGCTAAT 57.139 29.630 0.00 0.00 0.00 1.73
291 292 9.709495 TGATTTGTTCTTTTGCTAATAAATGCT 57.291 25.926 0.00 0.00 29.83 3.79
294 295 9.762933 TTTGTTCTTTTGCTAATAAATGCTTCT 57.237 25.926 0.00 0.00 0.00 2.85
295 296 8.970691 TGTTCTTTTGCTAATAAATGCTTCTC 57.029 30.769 0.00 0.00 0.00 2.87
296 297 8.796475 TGTTCTTTTGCTAATAAATGCTTCTCT 58.204 29.630 0.00 0.00 0.00 3.10
297 298 9.070149 GTTCTTTTGCTAATAAATGCTTCTCTG 57.930 33.333 0.00 0.00 0.00 3.35
298 299 7.253422 TCTTTTGCTAATAAATGCTTCTCTGC 58.747 34.615 0.00 0.00 0.00 4.26
300 301 5.490139 TGCTAATAAATGCTTCTCTGCAC 57.510 39.130 0.00 0.00 46.33 4.57
301 302 4.943093 TGCTAATAAATGCTTCTCTGCACA 59.057 37.500 0.00 0.00 46.33 4.57
302 303 5.065602 TGCTAATAAATGCTTCTCTGCACAG 59.934 40.000 0.00 0.00 46.33 3.66
303 304 4.367386 AATAAATGCTTCTCTGCACAGC 57.633 40.909 0.00 0.00 46.33 4.40
316 317 2.789213 TGCACAGCAGGTTATTTAGCA 58.211 42.857 0.00 0.00 33.32 3.49
317 318 3.153130 TGCACAGCAGGTTATTTAGCAA 58.847 40.909 0.00 0.00 33.32 3.91
318 319 3.057596 TGCACAGCAGGTTATTTAGCAAC 60.058 43.478 0.00 0.00 33.32 4.17
319 320 3.747193 CACAGCAGGTTATTTAGCAACG 58.253 45.455 0.00 0.00 0.00 4.10
320 321 3.188460 CACAGCAGGTTATTTAGCAACGT 59.812 43.478 0.00 0.00 0.00 3.99
321 322 4.390603 CACAGCAGGTTATTTAGCAACGTA 59.609 41.667 0.00 0.00 0.00 3.57
322 323 4.390909 ACAGCAGGTTATTTAGCAACGTAC 59.609 41.667 0.00 0.00 0.00 3.67
323 324 4.390603 CAGCAGGTTATTTAGCAACGTACA 59.609 41.667 0.00 0.00 0.00 2.90
324 325 4.390909 AGCAGGTTATTTAGCAACGTACAC 59.609 41.667 0.00 0.00 0.00 2.90
325 326 4.152759 GCAGGTTATTTAGCAACGTACACA 59.847 41.667 0.00 0.00 0.00 3.72
326 327 5.163794 GCAGGTTATTTAGCAACGTACACAT 60.164 40.000 0.00 0.00 0.00 3.21
327 328 6.622028 GCAGGTTATTTAGCAACGTACACATT 60.622 38.462 0.00 0.00 0.00 2.71
328 329 6.740905 CAGGTTATTTAGCAACGTACACATTG 59.259 38.462 0.00 0.00 0.00 2.82
329 330 6.651643 AGGTTATTTAGCAACGTACACATTGA 59.348 34.615 5.85 0.00 0.00 2.57
330 331 6.739550 GGTTATTTAGCAACGTACACATTGAC 59.260 38.462 5.85 0.00 0.00 3.18
331 332 7.360607 GGTTATTTAGCAACGTACACATTGACT 60.361 37.037 5.85 5.28 0.00 3.41
332 333 4.983215 TTAGCAACGTACACATTGACTG 57.017 40.909 5.85 0.00 0.00 3.51
333 334 2.833794 AGCAACGTACACATTGACTGT 58.166 42.857 5.85 0.00 39.20 3.55
334 335 3.202906 AGCAACGTACACATTGACTGTT 58.797 40.909 5.85 0.00 35.29 3.16
335 336 3.247648 AGCAACGTACACATTGACTGTTC 59.752 43.478 5.85 0.00 35.29 3.18
336 337 3.783377 CAACGTACACATTGACTGTTCG 58.217 45.455 0.00 5.34 35.29 3.95
337 338 3.088194 ACGTACACATTGACTGTTCGT 57.912 42.857 6.35 6.35 35.29 3.85
338 339 2.792674 ACGTACACATTGACTGTTCGTG 59.207 45.455 9.98 0.00 36.46 4.35
339 340 3.047093 CGTACACATTGACTGTTCGTGA 58.953 45.455 0.00 0.00 35.29 4.35
340 341 3.673338 CGTACACATTGACTGTTCGTGAT 59.327 43.478 0.00 0.00 35.29 3.06
341 342 4.432892 CGTACACATTGACTGTTCGTGATG 60.433 45.833 0.00 0.00 35.29 3.07
342 343 3.466836 ACACATTGACTGTTCGTGATGT 58.533 40.909 0.00 0.00 35.29 3.06
343 344 4.627058 ACACATTGACTGTTCGTGATGTA 58.373 39.130 0.00 0.00 35.29 2.29
344 345 5.237815 ACACATTGACTGTTCGTGATGTAT 58.762 37.500 0.00 0.00 35.29 2.29
345 346 5.700832 ACACATTGACTGTTCGTGATGTATT 59.299 36.000 0.00 0.00 35.29 1.89
346 347 6.128553 ACACATTGACTGTTCGTGATGTATTC 60.129 38.462 0.00 0.00 35.29 1.75
347 348 6.091305 CACATTGACTGTTCGTGATGTATTCT 59.909 38.462 0.00 0.00 35.29 2.40
348 349 6.311445 ACATTGACTGTTCGTGATGTATTCTC 59.689 38.462 0.00 0.00 32.90 2.87
349 350 5.385509 TGACTGTTCGTGATGTATTCTCA 57.614 39.130 0.00 0.00 0.00 3.27
350 351 5.778862 TGACTGTTCGTGATGTATTCTCAA 58.221 37.500 0.00 0.00 0.00 3.02
351 352 5.863935 TGACTGTTCGTGATGTATTCTCAAG 59.136 40.000 0.00 0.00 0.00 3.02
352 353 4.627467 ACTGTTCGTGATGTATTCTCAAGC 59.373 41.667 0.00 0.00 0.00 4.01
353 354 4.820897 TGTTCGTGATGTATTCTCAAGCT 58.179 39.130 0.00 0.00 0.00 3.74
354 355 5.237815 TGTTCGTGATGTATTCTCAAGCTT 58.762 37.500 0.00 0.00 0.00 3.74
355 356 5.120674 TGTTCGTGATGTATTCTCAAGCTTG 59.879 40.000 20.81 20.81 0.00 4.01
356 357 4.183865 TCGTGATGTATTCTCAAGCTTGG 58.816 43.478 25.73 16.25 0.00 3.61
357 358 4.081697 TCGTGATGTATTCTCAAGCTTGGA 60.082 41.667 25.73 18.20 0.00 3.53
358 359 4.631377 CGTGATGTATTCTCAAGCTTGGAA 59.369 41.667 25.73 24.51 0.00 3.53
359 360 5.295292 CGTGATGTATTCTCAAGCTTGGAAT 59.705 40.000 29.58 29.58 34.62 3.01
360 361 6.183360 CGTGATGTATTCTCAAGCTTGGAATT 60.183 38.462 30.79 20.95 33.35 2.17
361 362 7.542025 GTGATGTATTCTCAAGCTTGGAATTT 58.458 34.615 30.79 21.81 33.35 1.82
362 363 7.699812 GTGATGTATTCTCAAGCTTGGAATTTC 59.300 37.037 30.79 25.67 33.35 2.17
363 364 7.394077 TGATGTATTCTCAAGCTTGGAATTTCA 59.606 33.333 30.79 28.10 33.35 2.69
364 365 7.707624 TGTATTCTCAAGCTTGGAATTTCAT 57.292 32.000 30.79 18.91 33.35 2.57
365 366 8.125978 TGTATTCTCAAGCTTGGAATTTCATT 57.874 30.769 30.79 18.44 33.35 2.57
366 367 8.246180 TGTATTCTCAAGCTTGGAATTTCATTC 58.754 33.333 30.79 20.16 38.55 2.67
367 368 5.300969 TCTCAAGCTTGGAATTTCATTCG 57.699 39.130 25.73 0.00 40.17 3.34
368 369 3.836949 TCAAGCTTGGAATTTCATTCGC 58.163 40.909 25.73 0.00 40.17 4.70
369 370 3.507233 TCAAGCTTGGAATTTCATTCGCT 59.493 39.130 25.73 0.00 40.17 4.93
370 371 4.022068 TCAAGCTTGGAATTTCATTCGCTT 60.022 37.500 25.73 10.84 41.15 4.68
371 372 3.841643 AGCTTGGAATTTCATTCGCTTG 58.158 40.909 0.00 0.00 40.17 4.01
372 373 3.507233 AGCTTGGAATTTCATTCGCTTGA 59.493 39.130 0.00 0.00 40.17 3.02
373 374 3.855950 GCTTGGAATTTCATTCGCTTGAG 59.144 43.478 0.00 0.00 40.17 3.02
374 375 4.379813 GCTTGGAATTTCATTCGCTTGAGA 60.380 41.667 0.00 0.00 40.17 3.27
375 376 5.702865 CTTGGAATTTCATTCGCTTGAGAA 58.297 37.500 0.00 0.00 40.17 2.87
376 377 5.902613 TGGAATTTCATTCGCTTGAGAAT 57.097 34.783 0.00 0.00 41.12 2.40
386 387 5.902613 TTCGCTTGAGAATGATTGGAATT 57.097 34.783 0.00 0.00 0.00 2.17
387 388 5.902613 TCGCTTGAGAATGATTGGAATTT 57.097 34.783 0.00 0.00 0.00 1.82
388 389 5.883661 TCGCTTGAGAATGATTGGAATTTC 58.116 37.500 0.00 0.00 0.00 2.17
389 390 5.415389 TCGCTTGAGAATGATTGGAATTTCA 59.585 36.000 0.00 0.00 0.00 2.69
390 391 6.095860 TCGCTTGAGAATGATTGGAATTTCAT 59.904 34.615 0.00 0.00 34.08 2.57
391 392 6.755141 CGCTTGAGAATGATTGGAATTTCATT 59.245 34.615 3.31 3.31 43.42 2.57
402 403 8.355169 TGATTGGAATTTCATTCTTAGCTATGC 58.645 33.333 9.47 0.00 39.24 3.14
403 404 7.643569 TTGGAATTTCATTCTTAGCTATGCA 57.356 32.000 0.00 0.00 39.24 3.96
404 405 7.031226 TGGAATTTCATTCTTAGCTATGCAC 57.969 36.000 0.00 0.00 39.24 4.57
405 406 6.138761 GGAATTTCATTCTTAGCTATGCACG 58.861 40.000 0.00 0.00 39.24 5.34
406 407 4.536364 TTTCATTCTTAGCTATGCACGC 57.464 40.909 0.00 1.72 0.00 5.34
407 408 3.177997 TCATTCTTAGCTATGCACGCA 57.822 42.857 11.85 0.00 0.00 5.24
408 409 3.126073 TCATTCTTAGCTATGCACGCAG 58.874 45.455 11.85 0.41 0.00 5.18
409 410 2.959507 TTCTTAGCTATGCACGCAGA 57.040 45.000 11.85 4.59 0.00 4.26
410 411 2.959507 TCTTAGCTATGCACGCAGAA 57.040 45.000 11.85 5.18 0.00 3.02
411 412 2.540515 TCTTAGCTATGCACGCAGAAC 58.459 47.619 11.85 0.00 0.00 3.01
412 413 2.094234 TCTTAGCTATGCACGCAGAACA 60.094 45.455 11.85 0.00 0.00 3.18
413 414 1.926561 TAGCTATGCACGCAGAACAG 58.073 50.000 11.85 0.00 0.00 3.16
414 415 0.247460 AGCTATGCACGCAGAACAGA 59.753 50.000 11.85 0.00 0.00 3.41
415 416 1.078709 GCTATGCACGCAGAACAGAA 58.921 50.000 5.03 0.00 0.00 3.02
416 417 1.464608 GCTATGCACGCAGAACAGAAA 59.535 47.619 5.03 0.00 0.00 2.52
417 418 2.475187 GCTATGCACGCAGAACAGAAAG 60.475 50.000 5.03 0.00 0.00 2.62
418 419 1.597742 ATGCACGCAGAACAGAAAGT 58.402 45.000 0.00 0.00 0.00 2.66
419 420 0.657312 TGCACGCAGAACAGAAAGTG 59.343 50.000 0.00 0.00 0.00 3.16
420 421 0.937304 GCACGCAGAACAGAAAGTGA 59.063 50.000 0.00 0.00 0.00 3.41
421 422 1.532868 GCACGCAGAACAGAAAGTGAT 59.467 47.619 0.00 0.00 0.00 3.06
422 423 2.412065 GCACGCAGAACAGAAAGTGATC 60.412 50.000 0.00 0.00 0.00 2.92
423 424 2.158449 CACGCAGAACAGAAAGTGATCC 59.842 50.000 0.00 0.00 0.00 3.36
424 425 1.734465 CGCAGAACAGAAAGTGATCCC 59.266 52.381 0.00 0.00 0.00 3.85
425 426 2.087646 GCAGAACAGAAAGTGATCCCC 58.912 52.381 0.00 0.00 0.00 4.81
426 427 2.350522 CAGAACAGAAAGTGATCCCCG 58.649 52.381 0.00 0.00 0.00 5.73
427 428 1.279271 AGAACAGAAAGTGATCCCCGG 59.721 52.381 0.00 0.00 0.00 5.73
428 429 1.278127 GAACAGAAAGTGATCCCCGGA 59.722 52.381 0.73 0.00 0.00 5.14
429 430 0.613777 ACAGAAAGTGATCCCCGGAC 59.386 55.000 0.73 0.00 0.00 4.79
430 431 0.460284 CAGAAAGTGATCCCCGGACG 60.460 60.000 0.73 0.00 0.00 4.79
431 432 1.153429 GAAAGTGATCCCCGGACGG 60.153 63.158 0.73 3.25 0.00 4.79
447 448 4.792087 GGGCTTGACCGTCAAAGA 57.208 55.556 14.74 0.00 40.62 2.52
448 449 2.544726 GGGCTTGACCGTCAAAGAG 58.455 57.895 14.74 5.03 40.62 2.85
449 450 0.034896 GGGCTTGACCGTCAAAGAGA 59.965 55.000 14.74 0.00 40.62 3.10
450 451 1.433534 GGCTTGACCGTCAAAGAGAG 58.566 55.000 14.74 4.33 35.73 3.20
451 452 1.000955 GGCTTGACCGTCAAAGAGAGA 59.999 52.381 14.74 0.00 35.73 3.10
452 453 2.333014 GCTTGACCGTCAAAGAGAGAG 58.667 52.381 14.74 2.96 35.73 3.20
453 454 2.029828 GCTTGACCGTCAAAGAGAGAGA 60.030 50.000 14.74 0.00 35.73 3.10
454 455 3.553096 GCTTGACCGTCAAAGAGAGAGAA 60.553 47.826 14.74 0.00 35.73 2.87
455 456 4.621991 CTTGACCGTCAAAGAGAGAGAAA 58.378 43.478 14.74 0.00 35.73 2.52
456 457 4.665833 TGACCGTCAAAGAGAGAGAAAA 57.334 40.909 0.00 0.00 0.00 2.29
457 458 5.018539 TGACCGTCAAAGAGAGAGAAAAA 57.981 39.130 0.00 0.00 0.00 1.94
466 467 4.486125 AGAGAGAGAAAAAGAGATGGGC 57.514 45.455 0.00 0.00 0.00 5.36
731 732 1.959985 GAGGAAGAGATGGCAGATCGA 59.040 52.381 0.00 0.00 0.00 3.59
749 750 2.158445 TCGAGGGAAAGGGAGGAGATAG 60.158 54.545 0.00 0.00 0.00 2.08
756 757 1.501582 AGGGAGGAGATAGTTGCCAC 58.498 55.000 0.00 0.00 0.00 5.01
763 764 0.456221 AGATAGTTGCCACGAGACCG 59.544 55.000 0.00 0.00 42.50 4.79
787 788 1.342672 GGCGGGAGGAGTTATGGGAA 61.343 60.000 0.00 0.00 0.00 3.97
823 824 3.596214 GCGTCCATGAAAGAGGAAACTA 58.404 45.455 0.00 0.00 44.43 2.24
826 827 5.238583 CGTCCATGAAAGAGGAAACTAAGT 58.761 41.667 0.00 0.00 44.43 2.24
841 842 8.101419 AGGAAACTAAGTTGATTTCGGTCTTAT 58.899 33.333 7.29 0.00 40.61 1.73
857 858 7.394816 TCGGTCTTATTTTCTCCTGAATTTCT 58.605 34.615 0.00 0.00 31.56 2.52
877 878 4.279145 TCTGCCTCCTCTAGTTAATTCGT 58.721 43.478 0.00 0.00 0.00 3.85
928 929 7.530426 AACAAGGCTAATTTGAAGATCAAGT 57.470 32.000 0.00 0.00 37.70 3.16
966 967 1.213296 GCTTTCCTCATCCACCCCTA 58.787 55.000 0.00 0.00 0.00 3.53
998 999 0.250513 CCCTTTGCTAGTCTTCGCCT 59.749 55.000 0.00 0.00 0.00 5.52
1004 1005 1.099689 GCTAGTCTTCGCCTCTCTGT 58.900 55.000 0.00 0.00 0.00 3.41
1017 1018 3.142174 CCTCTCTGTTGTTCTTGGGTTC 58.858 50.000 0.00 0.00 0.00 3.62
1041 1042 3.044894 GAGGAAGAGGAAGGTGATGGAT 58.955 50.000 0.00 0.00 0.00 3.41
1082 1083 2.154074 GTGTGGAAGGGGTGGGAGT 61.154 63.158 0.00 0.00 0.00 3.85
1100 1101 0.250467 GTGGACCAGCAGCAGAAGAA 60.250 55.000 0.00 0.00 0.00 2.52
1354 1355 1.078759 GCGTCTCCATGGTGAAGTCG 61.079 60.000 24.34 20.46 0.00 4.18
1386 1387 2.504367 GTGGCAAGTAGTGATGGTTGT 58.496 47.619 0.00 0.00 0.00 3.32
1403 1404 3.095738 GTTGTTTTGTCGTGAAGTTCCG 58.904 45.455 0.00 4.03 0.00 4.30
1549 1550 0.550914 ATGGGCGCAAATTAGAGGGA 59.449 50.000 10.83 0.00 0.00 4.20
1698 1699 2.233676 TCTTCATGAGCCTCTACGCAAA 59.766 45.455 0.00 0.00 0.00 3.68
1743 1745 5.482006 GGCAGCTTCATTGAAATTAGGTTT 58.518 37.500 0.01 0.00 0.00 3.27
1746 1748 6.089954 GCAGCTTCATTGAAATTAGGTTTGAC 59.910 38.462 0.01 0.00 0.00 3.18
1755 1757 7.972832 TGAAATTAGGTTTGACGTGAAGTAT 57.027 32.000 0.00 0.00 0.00 2.12
1756 1758 9.491675 TTGAAATTAGGTTTGACGTGAAGTATA 57.508 29.630 0.00 0.00 0.00 1.47
1802 1805 1.373435 CGGTTTGGTAGGCCACTCA 59.627 57.895 5.01 0.00 46.01 3.41
1805 1808 1.369625 GTTTGGTAGGCCACTCATCG 58.630 55.000 5.01 0.00 46.01 3.84
1836 1839 2.822561 TGTAGCACTCCAAGAGACTCTG 59.177 50.000 5.55 0.50 33.32 3.35
1852 1855 1.376037 CTGGGAAGCCGGAGTTCAC 60.376 63.158 5.05 9.22 0.00 3.18
1854 1857 1.375326 GGGAAGCCGGAGTTCACTT 59.625 57.895 5.05 0.00 0.00 3.16
1855 1858 0.673956 GGGAAGCCGGAGTTCACTTC 60.674 60.000 5.05 7.21 38.22 3.01
1864 1867 2.159787 CGGAGTTCACTTCTGCAATTCG 60.160 50.000 0.00 0.00 0.00 3.34
1865 1868 3.067106 GGAGTTCACTTCTGCAATTCGA 58.933 45.455 0.00 0.00 0.00 3.71
1879 1882 3.242870 GCAATTCGAGTGGCTCCTTATTG 60.243 47.826 0.00 0.00 0.00 1.90
1894 1897 6.183360 GCTCCTTATTGGAAGGAAAGGAATTC 60.183 42.308 7.42 0.00 45.14 2.17
1903 1906 5.504853 GAAGGAAAGGAATTCTGTGAGGAT 58.495 41.667 5.23 0.00 38.18 3.24
1948 1951 1.000060 GCCAAAGATGAAGCAAGTGCA 60.000 47.619 6.00 0.00 45.16 4.57
1983 1986 0.673956 GGAAGTGGAGAAGGGCGTTC 60.674 60.000 11.81 11.81 35.08 3.95
2015 2018 2.350498 GGTAACGGTGAATTCCATGACG 59.650 50.000 2.27 3.22 0.00 4.35
2108 2111 0.925720 TTGGGGGCTCCTCCAATCAT 60.926 55.000 16.06 0.00 38.04 2.45
2110 2113 1.072159 GGGGCTCCTCCAATCATCG 59.928 63.158 0.00 0.00 36.21 3.84
2119 2122 2.304180 CCTCCAATCATCGGCTTCCTAT 59.696 50.000 0.00 0.00 0.00 2.57
2133 2136 4.706962 GGCTTCCTATTTCATCAACACCTT 59.293 41.667 0.00 0.00 0.00 3.50
2143 2146 0.468226 TCAACACCTTCGCCTTGTCT 59.532 50.000 0.00 0.00 0.00 3.41
2146 2149 1.371183 CACCTTCGCCTTGTCTGGA 59.629 57.895 0.00 0.00 0.00 3.86
2302 2305 3.599285 CTGTGCTCGCCCGGGTAAA 62.599 63.158 24.63 6.91 0.00 2.01
2345 2348 0.695347 CCTCTGAAGGCTTGAACCCT 59.305 55.000 3.46 0.00 35.37 4.34
2352 2355 2.436109 GCTTGAACCCTGGCCAGA 59.564 61.111 34.91 11.11 0.00 3.86
2379 2382 1.306226 GGTCTGGTACCTGCCTCCT 60.306 63.158 14.36 0.00 45.75 3.69
2391 2394 1.002888 CTGCCTCCTCTGCTCTTTTCA 59.997 52.381 0.00 0.00 0.00 2.69
2402 2405 0.964358 CTCTTTTCAGCCCCTGCCTG 60.964 60.000 0.00 0.00 38.69 4.85
2530 2533 2.327325 TTCTCTGCTCCTAAGGTGGT 57.673 50.000 0.00 0.00 0.00 4.16
2631 2634 4.445448 GCAACAGGGGAGATGAGAATACAT 60.445 45.833 0.00 0.00 0.00 2.29
2632 2635 5.688807 CAACAGGGGAGATGAGAATACATT 58.311 41.667 0.00 0.00 0.00 2.71
2680 2683 1.471501 CGCTCCTAGTTATGCACTGCA 60.472 52.381 6.09 6.09 44.86 4.41
2761 2764 3.724478 TCCTGACTAGGGATGTGAATGT 58.276 45.455 0.00 0.00 44.70 2.71
2764 2767 4.186926 CTGACTAGGGATGTGAATGTGTG 58.813 47.826 0.00 0.00 0.00 3.82
2884 2887 3.562108 TGTAGAGGGAAGAAGGGAGTT 57.438 47.619 0.00 0.00 0.00 3.01
2957 2960 0.034477 ACCGCCGGGAGAAATGAAAT 60.034 50.000 8.57 0.00 36.97 2.17
3027 3030 1.918467 CTTCTGGAGCTCCATGGCCA 61.918 60.000 35.11 8.56 46.46 5.36
3031 3034 2.191641 GAGCTCCATGGCCAGACC 59.808 66.667 13.05 0.00 39.84 3.85
3050 3053 6.349777 CCAGACCTGTGCGGATTTAATTTTTA 60.350 38.462 0.00 0.00 36.31 1.52
3333 3337 4.097741 CCTTCGCCAATTACATTCCAATGA 59.902 41.667 6.29 0.00 39.67 2.57
3453 3457 7.442666 AGACTTTAGGAACTGTTTGAGTGATTC 59.557 37.037 0.00 0.00 41.52 2.52
3528 3532 4.565652 GGACATTAGAGAAAGGCTGGACAA 60.566 45.833 0.00 0.00 0.00 3.18
3531 3535 4.706842 TTAGAGAAAGGCTGGACAAAGT 57.293 40.909 0.00 0.00 0.00 2.66
3545 3549 6.293955 GCTGGACAAAGTTGTATGTAATGTGT 60.294 38.462 0.00 0.00 42.43 3.72
3892 3899 1.341080 AAGGTTGAAATGTGGCCCTG 58.659 50.000 0.00 0.00 0.00 4.45
3976 3983 7.895429 TGGATCAGGAAGAAATTTTCTGGTTAT 59.105 33.333 12.27 3.82 40.59 1.89
3995 4006 6.332103 TGGTTATAGAGAGGGAGAGCTAACTA 59.668 42.308 0.00 0.00 0.00 2.24
3996 4007 6.656270 GGTTATAGAGAGGGAGAGCTAACTAC 59.344 46.154 0.00 0.00 0.00 2.73
4177 4190 3.570125 TGCGGATGTTATTCAACCAAACA 59.430 39.130 0.00 0.00 38.67 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.443681 CCTTAGTTAGGGCCACATGTTTG 59.556 47.826 6.18 0.00 40.67 2.93
2 3 2.916934 TCCTTAGTTAGGGCCACATGTT 59.083 45.455 6.18 0.00 44.86 2.71
4 5 2.919228 GTCCTTAGTTAGGGCCACATG 58.081 52.381 6.18 0.00 43.28 3.21
18 19 3.181438 TGGGCTTTGCTAAGTTGTCCTTA 60.181 43.478 9.64 0.00 34.46 2.69
19 20 2.239400 GGGCTTTGCTAAGTTGTCCTT 58.761 47.619 9.64 0.00 37.17 3.36
20 21 1.144913 TGGGCTTTGCTAAGTTGTCCT 59.855 47.619 9.64 0.00 33.74 3.85
21 22 1.616159 TGGGCTTTGCTAAGTTGTCC 58.384 50.000 9.64 7.13 33.74 4.02
22 23 2.623416 AGTTGGGCTTTGCTAAGTTGTC 59.377 45.455 9.64 0.00 33.74 3.18
23 24 2.666317 AGTTGGGCTTTGCTAAGTTGT 58.334 42.857 9.64 0.00 33.74 3.32
24 25 4.072131 TCTAGTTGGGCTTTGCTAAGTTG 58.928 43.478 9.64 0.00 33.74 3.16
25 26 4.367039 TCTAGTTGGGCTTTGCTAAGTT 57.633 40.909 9.64 0.00 33.74 2.66
26 27 4.576330 ATCTAGTTGGGCTTTGCTAAGT 57.424 40.909 9.64 0.00 33.74 2.24
27 28 4.943705 TCAATCTAGTTGGGCTTTGCTAAG 59.056 41.667 3.31 3.31 38.39 2.18
28 29 4.917385 TCAATCTAGTTGGGCTTTGCTAA 58.083 39.130 5.57 0.00 38.39 3.09
29 30 4.568072 TCAATCTAGTTGGGCTTTGCTA 57.432 40.909 5.57 0.00 38.39 3.49
30 31 3.439857 TCAATCTAGTTGGGCTTTGCT 57.560 42.857 5.57 0.00 38.39 3.91
31 32 4.021981 ACTTTCAATCTAGTTGGGCTTTGC 60.022 41.667 5.57 0.00 38.39 3.68
32 33 5.712152 ACTTTCAATCTAGTTGGGCTTTG 57.288 39.130 5.57 0.00 38.39 2.77
33 34 6.779860 TCTACTTTCAATCTAGTTGGGCTTT 58.220 36.000 5.57 0.00 38.39 3.51
34 35 6.374417 TCTACTTTCAATCTAGTTGGGCTT 57.626 37.500 5.57 0.00 38.39 4.35
35 36 6.374417 TTCTACTTTCAATCTAGTTGGGCT 57.626 37.500 5.57 0.00 38.39 5.19
36 37 7.175119 ACTTTTCTACTTTCAATCTAGTTGGGC 59.825 37.037 5.57 0.00 38.39 5.36
37 38 8.622948 ACTTTTCTACTTTCAATCTAGTTGGG 57.377 34.615 5.57 1.37 38.39 4.12
40 41 9.952188 GCAAACTTTTCTACTTTCAATCTAGTT 57.048 29.630 0.00 0.00 0.00 2.24
41 42 9.343539 AGCAAACTTTTCTACTTTCAATCTAGT 57.656 29.630 0.00 0.00 0.00 2.57
44 45 8.907885 AGAAGCAAACTTTTCTACTTTCAATCT 58.092 29.630 0.00 0.00 35.82 2.40
45 46 9.521503 AAGAAGCAAACTTTTCTACTTTCAATC 57.478 29.630 0.00 0.00 35.82 2.67
46 47 9.521503 GAAGAAGCAAACTTTTCTACTTTCAAT 57.478 29.630 0.00 0.00 35.82 2.57
47 48 7.973944 GGAAGAAGCAAACTTTTCTACTTTCAA 59.026 33.333 0.00 0.00 35.82 2.69
48 49 7.122055 TGGAAGAAGCAAACTTTTCTACTTTCA 59.878 33.333 0.00 0.00 35.82 2.69
49 50 7.480810 TGGAAGAAGCAAACTTTTCTACTTTC 58.519 34.615 0.00 0.00 35.82 2.62
50 51 7.404671 TGGAAGAAGCAAACTTTTCTACTTT 57.595 32.000 0.00 0.00 35.82 2.66
51 52 7.404671 TTGGAAGAAGCAAACTTTTCTACTT 57.595 32.000 0.00 0.00 35.82 2.24
52 53 7.588497 ATTGGAAGAAGCAAACTTTTCTACT 57.412 32.000 0.00 0.00 35.82 2.57
53 54 9.744468 TTAATTGGAAGAAGCAAACTTTTCTAC 57.256 29.630 0.00 0.00 35.82 2.59
55 56 9.836864 ATTTAATTGGAAGAAGCAAACTTTTCT 57.163 25.926 0.00 0.00 35.82 2.52
56 57 9.868389 CATTTAATTGGAAGAAGCAAACTTTTC 57.132 29.630 0.00 0.00 35.82 2.29
57 58 8.839343 CCATTTAATTGGAAGAAGCAAACTTTT 58.161 29.630 10.33 0.00 39.25 2.27
58 59 8.210265 TCCATTTAATTGGAAGAAGCAAACTTT 58.790 29.630 15.17 0.00 42.82 2.66
59 60 7.734942 TCCATTTAATTGGAAGAAGCAAACTT 58.265 30.769 15.17 0.00 42.82 2.66
60 61 7.301868 TCCATTTAATTGGAAGAAGCAAACT 57.698 32.000 15.17 0.00 42.82 2.66
95 96 9.341899 GCGTAAACTCACATTGAAAGAAAATAT 57.658 29.630 0.00 0.00 0.00 1.28
96 97 7.532546 CGCGTAAACTCACATTGAAAGAAAATA 59.467 33.333 0.00 0.00 0.00 1.40
97 98 6.359617 CGCGTAAACTCACATTGAAAGAAAAT 59.640 34.615 0.00 0.00 0.00 1.82
98 99 5.679355 CGCGTAAACTCACATTGAAAGAAAA 59.321 36.000 0.00 0.00 0.00 2.29
99 100 5.201910 CGCGTAAACTCACATTGAAAGAAA 58.798 37.500 0.00 0.00 0.00 2.52
100 101 4.271533 ACGCGTAAACTCACATTGAAAGAA 59.728 37.500 11.67 0.00 0.00 2.52
101 102 3.805422 ACGCGTAAACTCACATTGAAAGA 59.195 39.130 11.67 0.00 0.00 2.52
102 103 3.900116 CACGCGTAAACTCACATTGAAAG 59.100 43.478 13.44 0.00 0.00 2.62
103 104 3.303461 CCACGCGTAAACTCACATTGAAA 60.303 43.478 13.44 0.00 0.00 2.69
104 105 2.222213 CCACGCGTAAACTCACATTGAA 59.778 45.455 13.44 0.00 0.00 2.69
105 106 1.795872 CCACGCGTAAACTCACATTGA 59.204 47.619 13.44 0.00 0.00 2.57
106 107 1.529438 ACCACGCGTAAACTCACATTG 59.471 47.619 13.44 0.00 0.00 2.82
107 108 1.796459 GACCACGCGTAAACTCACATT 59.204 47.619 13.44 0.00 0.00 2.71
108 109 1.269883 TGACCACGCGTAAACTCACAT 60.270 47.619 13.44 0.00 0.00 3.21
109 110 0.102663 TGACCACGCGTAAACTCACA 59.897 50.000 13.44 2.84 0.00 3.58
110 111 0.782384 CTGACCACGCGTAAACTCAC 59.218 55.000 13.44 0.00 0.00 3.51
111 112 0.669619 TCTGACCACGCGTAAACTCA 59.330 50.000 13.44 9.22 0.00 3.41
112 113 1.992170 ATCTGACCACGCGTAAACTC 58.008 50.000 13.44 4.49 0.00 3.01
113 114 2.159282 CCTATCTGACCACGCGTAAACT 60.159 50.000 13.44 0.00 0.00 2.66
114 115 2.190981 CCTATCTGACCACGCGTAAAC 58.809 52.381 13.44 6.61 0.00 2.01
115 116 1.820519 ACCTATCTGACCACGCGTAAA 59.179 47.619 13.44 0.00 0.00 2.01
116 117 1.402968 GACCTATCTGACCACGCGTAA 59.597 52.381 13.44 0.00 0.00 3.18
117 118 1.019673 GACCTATCTGACCACGCGTA 58.980 55.000 13.44 0.00 0.00 4.42
118 119 1.807886 GACCTATCTGACCACGCGT 59.192 57.895 5.58 5.58 0.00 6.01
119 120 1.298413 CGACCTATCTGACCACGCG 60.298 63.158 3.53 3.53 0.00 6.01
120 121 1.589196 GCGACCTATCTGACCACGC 60.589 63.158 0.00 0.00 38.03 5.34
121 122 1.065928 GGCGACCTATCTGACCACG 59.934 63.158 0.00 0.00 0.00 4.94
122 123 0.386113 GAGGCGACCTATCTGACCAC 59.614 60.000 0.00 0.00 31.76 4.16
123 124 0.259065 AGAGGCGACCTATCTGACCA 59.741 55.000 0.00 0.00 31.76 4.02
124 125 2.273538 TAGAGGCGACCTATCTGACC 57.726 55.000 0.00 0.00 31.76 4.02
125 126 3.215975 AGTTAGAGGCGACCTATCTGAC 58.784 50.000 0.00 0.00 31.76 3.51
126 127 3.579534 AGTTAGAGGCGACCTATCTGA 57.420 47.619 0.00 0.00 31.76 3.27
127 128 3.381908 ACAAGTTAGAGGCGACCTATCTG 59.618 47.826 0.00 0.00 31.76 2.90
128 129 3.633418 ACAAGTTAGAGGCGACCTATCT 58.367 45.455 0.00 0.00 31.76 1.98
129 130 5.474189 AGATACAAGTTAGAGGCGACCTATC 59.526 44.000 0.00 0.00 31.76 2.08
130 131 5.241949 CAGATACAAGTTAGAGGCGACCTAT 59.758 44.000 0.00 0.00 31.76 2.57
131 132 4.579340 CAGATACAAGTTAGAGGCGACCTA 59.421 45.833 0.00 0.00 31.76 3.08
132 133 3.381908 CAGATACAAGTTAGAGGCGACCT 59.618 47.826 0.00 0.00 36.03 3.85
133 134 3.707793 CAGATACAAGTTAGAGGCGACC 58.292 50.000 0.00 0.00 0.00 4.79
134 135 3.117046 GCAGATACAAGTTAGAGGCGAC 58.883 50.000 0.00 0.00 0.00 5.19
135 136 2.100916 GGCAGATACAAGTTAGAGGCGA 59.899 50.000 0.00 0.00 0.00 5.54
136 137 2.101582 AGGCAGATACAAGTTAGAGGCG 59.898 50.000 0.00 0.00 0.00 5.52
137 138 3.723260 GAGGCAGATACAAGTTAGAGGC 58.277 50.000 0.00 0.00 0.00 4.70
138 139 3.381908 ACGAGGCAGATACAAGTTAGAGG 59.618 47.826 0.00 0.00 0.00 3.69
139 140 4.640789 ACGAGGCAGATACAAGTTAGAG 57.359 45.455 0.00 0.00 0.00 2.43
140 141 5.066117 CACTACGAGGCAGATACAAGTTAGA 59.934 44.000 0.00 0.00 0.00 2.10
141 142 5.163642 ACACTACGAGGCAGATACAAGTTAG 60.164 44.000 0.00 0.00 0.00 2.34
142 143 4.703575 ACACTACGAGGCAGATACAAGTTA 59.296 41.667 0.00 0.00 0.00 2.24
143 144 3.510360 ACACTACGAGGCAGATACAAGTT 59.490 43.478 0.00 0.00 0.00 2.66
144 145 3.090037 ACACTACGAGGCAGATACAAGT 58.910 45.455 0.00 0.00 0.00 3.16
145 146 3.784701 ACACTACGAGGCAGATACAAG 57.215 47.619 0.00 0.00 0.00 3.16
146 147 3.845178 CAACACTACGAGGCAGATACAA 58.155 45.455 0.00 0.00 0.00 2.41
147 148 2.416836 GCAACACTACGAGGCAGATACA 60.417 50.000 0.00 0.00 0.00 2.29
148 149 2.194271 GCAACACTACGAGGCAGATAC 58.806 52.381 0.00 0.00 0.00 2.24
149 150 1.136305 GGCAACACTACGAGGCAGATA 59.864 52.381 0.00 0.00 0.00 1.98
150 151 0.108138 GGCAACACTACGAGGCAGAT 60.108 55.000 0.00 0.00 0.00 2.90
151 152 1.292223 GGCAACACTACGAGGCAGA 59.708 57.895 0.00 0.00 0.00 4.26
152 153 1.005037 TGGCAACACTACGAGGCAG 60.005 57.895 0.00 0.00 46.17 4.85
153 154 3.143338 TGGCAACACTACGAGGCA 58.857 55.556 0.00 0.00 46.17 4.75
169 170 4.219507 TGGTAACCAACTGCCAACATATTG 59.780 41.667 0.00 0.00 35.40 1.90
170 171 4.411927 TGGTAACCAACTGCCAACATATT 58.588 39.130 0.00 0.00 0.00 1.28
171 172 4.040936 TGGTAACCAACTGCCAACATAT 57.959 40.909 0.00 0.00 0.00 1.78
172 173 3.510531 TGGTAACCAACTGCCAACATA 57.489 42.857 0.00 0.00 0.00 2.29
173 174 2.373335 TGGTAACCAACTGCCAACAT 57.627 45.000 0.00 0.00 0.00 2.71
174 175 2.028130 CTTGGTAACCAACTGCCAACA 58.972 47.619 0.00 0.00 38.75 3.33
175 176 1.269569 GCTTGGTAACCAACTGCCAAC 60.270 52.381 0.00 0.00 38.75 3.77
176 177 1.036707 GCTTGGTAACCAACTGCCAA 58.963 50.000 0.00 0.00 38.75 4.52
177 178 1.169661 CGCTTGGTAACCAACTGCCA 61.170 55.000 0.00 0.00 38.75 4.92
178 179 1.170290 ACGCTTGGTAACCAACTGCC 61.170 55.000 0.00 0.00 38.75 4.85
179 180 0.666374 AACGCTTGGTAACCAACTGC 59.334 50.000 0.00 0.00 38.75 4.40
180 181 1.944024 TCAACGCTTGGTAACCAACTG 59.056 47.619 0.00 0.00 38.75 3.16
181 182 2.335316 TCAACGCTTGGTAACCAACT 57.665 45.000 0.00 0.00 38.75 3.16
182 183 2.095415 GGATCAACGCTTGGTAACCAAC 60.095 50.000 0.00 0.00 38.75 3.77
183 184 2.156098 GGATCAACGCTTGGTAACCAA 58.844 47.619 0.00 0.00 41.69 3.67
184 185 1.072489 TGGATCAACGCTTGGTAACCA 59.928 47.619 0.00 0.00 0.00 3.67
185 186 1.816074 TGGATCAACGCTTGGTAACC 58.184 50.000 0.00 0.00 0.00 2.85
186 187 3.071479 TCTTGGATCAACGCTTGGTAAC 58.929 45.455 0.00 0.00 0.00 2.50
187 188 3.410631 TCTTGGATCAACGCTTGGTAA 57.589 42.857 0.00 0.00 0.00 2.85
188 189 3.410631 TTCTTGGATCAACGCTTGGTA 57.589 42.857 0.00 0.00 0.00 3.25
189 190 2.270352 TTCTTGGATCAACGCTTGGT 57.730 45.000 0.00 0.00 0.00 3.67
190 191 4.191544 TCTATTCTTGGATCAACGCTTGG 58.808 43.478 0.00 0.00 0.00 3.61
191 192 5.801350 TTCTATTCTTGGATCAACGCTTG 57.199 39.130 0.00 0.00 0.00 4.01
192 193 6.038714 GGAATTCTATTCTTGGATCAACGCTT 59.961 38.462 5.23 0.00 0.00 4.68
193 194 5.529060 GGAATTCTATTCTTGGATCAACGCT 59.471 40.000 5.23 0.00 0.00 5.07
194 195 5.278022 GGGAATTCTATTCTTGGATCAACGC 60.278 44.000 5.23 0.00 0.00 4.84
195 196 5.822519 TGGGAATTCTATTCTTGGATCAACG 59.177 40.000 5.23 0.00 0.00 4.10
196 197 7.040132 GGATGGGAATTCTATTCTTGGATCAAC 60.040 40.741 5.23 0.00 0.00 3.18
197 198 7.006509 GGATGGGAATTCTATTCTTGGATCAA 58.993 38.462 5.23 0.00 0.00 2.57
198 199 6.103057 TGGATGGGAATTCTATTCTTGGATCA 59.897 38.462 5.23 0.00 0.00 2.92
199 200 6.546484 TGGATGGGAATTCTATTCTTGGATC 58.454 40.000 5.23 0.00 0.00 3.36
200 201 6.468359 CCTGGATGGGAATTCTATTCTTGGAT 60.468 42.308 5.23 0.00 0.00 3.41
201 202 5.163055 CCTGGATGGGAATTCTATTCTTGGA 60.163 44.000 5.23 0.00 0.00 3.53
202 203 5.075493 CCTGGATGGGAATTCTATTCTTGG 58.925 45.833 5.23 3.48 0.00 3.61
203 204 5.533903 CACCTGGATGGGAATTCTATTCTTG 59.466 44.000 5.23 0.00 41.11 3.02
204 205 5.399497 CCACCTGGATGGGAATTCTATTCTT 60.399 44.000 5.23 0.00 41.11 2.52
205 206 4.105377 CCACCTGGATGGGAATTCTATTCT 59.895 45.833 5.23 0.00 41.11 2.40
206 207 4.401925 CCACCTGGATGGGAATTCTATTC 58.598 47.826 5.23 0.41 41.11 1.75
207 208 4.459852 CCACCTGGATGGGAATTCTATT 57.540 45.455 5.23 0.00 41.11 1.73
217 218 3.089284 GTTTTTACTCCCACCTGGATGG 58.911 50.000 0.00 4.45 44.07 3.51
218 219 2.747446 CGTTTTTACTCCCACCTGGATG 59.253 50.000 0.00 0.00 44.07 3.51
219 220 2.374170 ACGTTTTTACTCCCACCTGGAT 59.626 45.455 0.00 0.00 44.07 3.41
220 221 1.770061 ACGTTTTTACTCCCACCTGGA 59.230 47.619 0.00 0.00 42.41 3.86
221 222 2.265589 ACGTTTTTACTCCCACCTGG 57.734 50.000 0.00 0.00 0.00 4.45
222 223 3.628487 TCAAACGTTTTTACTCCCACCTG 59.372 43.478 11.66 0.00 0.00 4.00
223 224 3.888583 TCAAACGTTTTTACTCCCACCT 58.111 40.909 11.66 0.00 0.00 4.00
224 225 4.276431 TGATCAAACGTTTTTACTCCCACC 59.724 41.667 11.66 0.00 0.00 4.61
225 226 5.209977 GTGATCAAACGTTTTTACTCCCAC 58.790 41.667 11.66 8.81 0.00 4.61
226 227 4.276431 GGTGATCAAACGTTTTTACTCCCA 59.724 41.667 11.66 0.32 0.00 4.37
227 228 4.517832 AGGTGATCAAACGTTTTTACTCCC 59.482 41.667 11.66 7.46 0.00 4.30
228 229 5.684550 AGGTGATCAAACGTTTTTACTCC 57.315 39.130 11.66 14.06 0.00 3.85
229 230 5.912955 CCAAGGTGATCAAACGTTTTTACTC 59.087 40.000 11.66 6.40 0.00 2.59
230 231 5.735070 GCCAAGGTGATCAAACGTTTTTACT 60.735 40.000 11.66 1.47 0.00 2.24
231 232 4.443063 GCCAAGGTGATCAAACGTTTTTAC 59.557 41.667 11.66 4.97 0.00 2.01
232 233 4.339814 AGCCAAGGTGATCAAACGTTTTTA 59.660 37.500 11.66 2.82 0.00 1.52
233 234 3.132111 AGCCAAGGTGATCAAACGTTTTT 59.868 39.130 11.66 1.43 0.00 1.94
234 235 2.693074 AGCCAAGGTGATCAAACGTTTT 59.307 40.909 11.66 0.00 0.00 2.43
235 236 2.306847 AGCCAAGGTGATCAAACGTTT 58.693 42.857 7.96 7.96 0.00 3.60
236 237 1.981256 AGCCAAGGTGATCAAACGTT 58.019 45.000 0.00 0.00 0.00 3.99
237 238 2.851263 TAGCCAAGGTGATCAAACGT 57.149 45.000 0.00 0.00 0.00 3.99
238 239 3.009723 ACATAGCCAAGGTGATCAAACG 58.990 45.455 0.00 0.00 0.00 3.60
239 240 4.576463 CCTACATAGCCAAGGTGATCAAAC 59.424 45.833 0.00 0.00 0.00 2.93
240 241 4.473196 TCCTACATAGCCAAGGTGATCAAA 59.527 41.667 0.00 0.00 0.00 2.69
241 242 4.037222 TCCTACATAGCCAAGGTGATCAA 58.963 43.478 0.00 0.00 0.00 2.57
242 243 3.653164 TCCTACATAGCCAAGGTGATCA 58.347 45.455 0.00 0.00 0.00 2.92
243 244 4.899352 ATCCTACATAGCCAAGGTGATC 57.101 45.455 0.00 0.00 0.00 2.92
244 245 4.660303 TCAATCCTACATAGCCAAGGTGAT 59.340 41.667 0.00 0.00 0.00 3.06
245 246 4.037222 TCAATCCTACATAGCCAAGGTGA 58.963 43.478 0.00 0.00 0.00 4.02
246 247 4.422073 TCAATCCTACATAGCCAAGGTG 57.578 45.455 0.00 0.00 0.00 4.00
247 248 5.653255 AATCAATCCTACATAGCCAAGGT 57.347 39.130 0.00 0.00 0.00 3.50
248 249 5.829924 ACAAATCAATCCTACATAGCCAAGG 59.170 40.000 0.00 0.00 0.00 3.61
249 250 6.949352 ACAAATCAATCCTACATAGCCAAG 57.051 37.500 0.00 0.00 0.00 3.61
250 251 7.118723 AGAACAAATCAATCCTACATAGCCAA 58.881 34.615 0.00 0.00 0.00 4.52
251 252 6.662755 AGAACAAATCAATCCTACATAGCCA 58.337 36.000 0.00 0.00 0.00 4.75
252 253 7.573968 AAGAACAAATCAATCCTACATAGCC 57.426 36.000 0.00 0.00 0.00 3.93
253 254 9.294030 CAAAAGAACAAATCAATCCTACATAGC 57.706 33.333 0.00 0.00 0.00 2.97
254 255 9.294030 GCAAAAGAACAAATCAATCCTACATAG 57.706 33.333 0.00 0.00 0.00 2.23
255 256 9.023962 AGCAAAAGAACAAATCAATCCTACATA 57.976 29.630 0.00 0.00 0.00 2.29
256 257 7.899973 AGCAAAAGAACAAATCAATCCTACAT 58.100 30.769 0.00 0.00 0.00 2.29
257 258 7.288810 AGCAAAAGAACAAATCAATCCTACA 57.711 32.000 0.00 0.00 0.00 2.74
258 259 9.860898 ATTAGCAAAAGAACAAATCAATCCTAC 57.139 29.630 0.00 0.00 0.00 3.18
265 266 9.709495 AGCATTTATTAGCAAAAGAACAAATCA 57.291 25.926 0.00 0.00 0.00 2.57
268 269 9.762933 AGAAGCATTTATTAGCAAAAGAACAAA 57.237 25.926 0.00 0.00 0.00 2.83
269 270 9.410556 GAGAAGCATTTATTAGCAAAAGAACAA 57.589 29.630 0.00 0.00 0.00 2.83
270 271 8.796475 AGAGAAGCATTTATTAGCAAAAGAACA 58.204 29.630 0.00 0.00 0.00 3.18
271 272 9.070149 CAGAGAAGCATTTATTAGCAAAAGAAC 57.930 33.333 0.00 0.00 0.00 3.01
272 273 7.756722 GCAGAGAAGCATTTATTAGCAAAAGAA 59.243 33.333 0.00 0.00 0.00 2.52
273 274 7.094248 TGCAGAGAAGCATTTATTAGCAAAAGA 60.094 33.333 0.00 0.00 40.11 2.52
274 275 7.031372 TGCAGAGAAGCATTTATTAGCAAAAG 58.969 34.615 0.00 0.00 40.11 2.27
275 276 6.923012 TGCAGAGAAGCATTTATTAGCAAAA 58.077 32.000 0.00 0.00 40.11 2.44
276 277 6.513806 TGCAGAGAAGCATTTATTAGCAAA 57.486 33.333 0.00 0.00 40.11 3.68
296 297 2.789213 TGCTAAATAACCTGCTGTGCA 58.211 42.857 0.00 0.00 36.92 4.57
297 298 3.501950 GTTGCTAAATAACCTGCTGTGC 58.498 45.455 0.00 0.00 0.00 4.57
298 299 3.188460 ACGTTGCTAAATAACCTGCTGTG 59.812 43.478 0.00 0.00 0.00 3.66
299 300 3.408634 ACGTTGCTAAATAACCTGCTGT 58.591 40.909 0.00 0.00 0.00 4.40
300 301 4.390603 TGTACGTTGCTAAATAACCTGCTG 59.609 41.667 0.00 0.00 0.00 4.41
301 302 4.390909 GTGTACGTTGCTAAATAACCTGCT 59.609 41.667 0.00 0.00 0.00 4.24
302 303 4.152759 TGTGTACGTTGCTAAATAACCTGC 59.847 41.667 0.00 0.00 0.00 4.85
303 304 5.849357 TGTGTACGTTGCTAAATAACCTG 57.151 39.130 0.00 0.00 0.00 4.00
304 305 6.651643 TCAATGTGTACGTTGCTAAATAACCT 59.348 34.615 11.19 0.00 41.39 3.50
305 306 6.739550 GTCAATGTGTACGTTGCTAAATAACC 59.260 38.462 11.19 0.00 41.39 2.85
306 307 7.477422 CAGTCAATGTGTACGTTGCTAAATAAC 59.523 37.037 11.19 4.10 41.39 1.89
307 308 7.171848 ACAGTCAATGTGTACGTTGCTAAATAA 59.828 33.333 11.19 0.00 41.91 1.40
308 309 6.647481 ACAGTCAATGTGTACGTTGCTAAATA 59.353 34.615 11.19 0.00 41.91 1.40
309 310 5.468746 ACAGTCAATGTGTACGTTGCTAAAT 59.531 36.000 11.19 0.00 41.91 1.40
310 311 4.812091 ACAGTCAATGTGTACGTTGCTAAA 59.188 37.500 11.19 0.00 41.91 1.85
311 312 4.373527 ACAGTCAATGTGTACGTTGCTAA 58.626 39.130 11.19 0.00 41.91 3.09
312 313 3.985008 ACAGTCAATGTGTACGTTGCTA 58.015 40.909 11.19 0.00 41.91 3.49
313 314 2.833794 ACAGTCAATGTGTACGTTGCT 58.166 42.857 11.19 9.16 41.91 3.91
314 315 3.541711 GAACAGTCAATGTGTACGTTGC 58.458 45.455 11.19 7.41 43.00 4.17
315 316 3.244345 ACGAACAGTCAATGTGTACGTTG 59.756 43.478 10.03 10.03 43.00 4.10
316 317 3.244345 CACGAACAGTCAATGTGTACGTT 59.756 43.478 0.00 0.00 43.00 3.99
317 318 2.792674 CACGAACAGTCAATGTGTACGT 59.207 45.455 0.00 0.00 43.00 3.57
318 319 3.047093 TCACGAACAGTCAATGTGTACG 58.953 45.455 0.00 0.00 43.00 3.67
319 320 4.447724 ACATCACGAACAGTCAATGTGTAC 59.552 41.667 0.00 0.00 43.00 2.90
320 321 4.627058 ACATCACGAACAGTCAATGTGTA 58.373 39.130 0.00 0.00 43.00 2.90
321 322 3.466836 ACATCACGAACAGTCAATGTGT 58.533 40.909 0.00 0.00 43.00 3.72
322 323 5.784750 ATACATCACGAACAGTCAATGTG 57.215 39.130 0.00 0.00 43.00 3.21
323 324 6.166279 AGAATACATCACGAACAGTCAATGT 58.834 36.000 0.00 0.00 46.97 2.71
324 325 6.311200 TGAGAATACATCACGAACAGTCAATG 59.689 38.462 0.00 0.00 32.27 2.82
325 326 6.398095 TGAGAATACATCACGAACAGTCAAT 58.602 36.000 0.00 0.00 0.00 2.57
326 327 5.778862 TGAGAATACATCACGAACAGTCAA 58.221 37.500 0.00 0.00 0.00 3.18
327 328 5.385509 TGAGAATACATCACGAACAGTCA 57.614 39.130 0.00 0.00 0.00 3.41
328 329 5.220303 GCTTGAGAATACATCACGAACAGTC 60.220 44.000 0.00 0.00 0.00 3.51
329 330 4.627467 GCTTGAGAATACATCACGAACAGT 59.373 41.667 0.00 0.00 0.00 3.55
330 331 4.867047 AGCTTGAGAATACATCACGAACAG 59.133 41.667 0.00 0.00 0.00 3.16
331 332 4.820897 AGCTTGAGAATACATCACGAACA 58.179 39.130 0.00 0.00 0.00 3.18
332 333 5.446473 CCAAGCTTGAGAATACATCACGAAC 60.446 44.000 28.05 0.00 0.00 3.95
333 334 4.631377 CCAAGCTTGAGAATACATCACGAA 59.369 41.667 28.05 0.00 0.00 3.85
334 335 4.081697 TCCAAGCTTGAGAATACATCACGA 60.082 41.667 28.05 8.45 0.00 4.35
335 336 4.183865 TCCAAGCTTGAGAATACATCACG 58.816 43.478 28.05 6.11 0.00 4.35
336 337 6.690194 ATTCCAAGCTTGAGAATACATCAC 57.310 37.500 27.60 0.00 31.14 3.06
337 338 7.394077 TGAAATTCCAAGCTTGAGAATACATCA 59.606 33.333 28.32 26.69 32.00 3.07
338 339 7.765307 TGAAATTCCAAGCTTGAGAATACATC 58.235 34.615 28.32 25.40 32.00 3.06
339 340 7.707624 TGAAATTCCAAGCTTGAGAATACAT 57.292 32.000 28.32 21.47 32.00 2.29
340 341 7.707624 ATGAAATTCCAAGCTTGAGAATACA 57.292 32.000 28.32 27.64 32.00 2.29
363 364 6.461110 AATTCCAATCATTCTCAAGCGAAT 57.539 33.333 0.00 0.00 34.07 3.34
364 365 5.902613 AATTCCAATCATTCTCAAGCGAA 57.097 34.783 0.00 0.00 0.00 4.70
365 366 5.415389 TGAAATTCCAATCATTCTCAAGCGA 59.585 36.000 0.00 0.00 0.00 4.93
366 367 5.643664 TGAAATTCCAATCATTCTCAAGCG 58.356 37.500 0.00 0.00 0.00 4.68
381 382 9.529327 TGCGTGCATAGCTAAGAATGAAATTCC 62.529 40.741 16.27 0.00 43.95 3.01
382 383 6.730256 TGCGTGCATAGCTAAGAATGAAATTC 60.730 38.462 16.27 0.00 43.57 2.17
383 384 5.066375 TGCGTGCATAGCTAAGAATGAAATT 59.934 36.000 16.27 0.00 35.58 1.82
384 385 4.576053 TGCGTGCATAGCTAAGAATGAAAT 59.424 37.500 16.27 0.00 35.28 2.17
385 386 3.938334 TGCGTGCATAGCTAAGAATGAAA 59.062 39.130 16.27 0.00 35.28 2.69
386 387 3.530535 TGCGTGCATAGCTAAGAATGAA 58.469 40.909 16.27 0.00 35.28 2.57
387 388 3.126073 CTGCGTGCATAGCTAAGAATGA 58.874 45.455 16.27 0.00 35.28 2.57
388 389 3.126073 TCTGCGTGCATAGCTAAGAATG 58.874 45.455 16.27 0.00 35.28 2.67
389 390 3.459232 TCTGCGTGCATAGCTAAGAAT 57.541 42.857 16.27 0.00 35.28 2.40
390 391 2.930040 GTTCTGCGTGCATAGCTAAGAA 59.070 45.455 16.27 14.22 35.28 2.52
391 392 2.094234 TGTTCTGCGTGCATAGCTAAGA 60.094 45.455 16.27 9.89 35.28 2.10
392 393 2.270923 TGTTCTGCGTGCATAGCTAAG 58.729 47.619 16.27 0.00 35.28 2.18
393 394 2.094234 TCTGTTCTGCGTGCATAGCTAA 60.094 45.455 16.27 9.16 35.28 3.09
394 395 1.476488 TCTGTTCTGCGTGCATAGCTA 59.524 47.619 16.27 0.00 35.28 3.32
395 396 0.247460 TCTGTTCTGCGTGCATAGCT 59.753 50.000 16.27 0.00 35.28 3.32
396 397 1.078709 TTCTGTTCTGCGTGCATAGC 58.921 50.000 9.79 9.79 0.00 2.97
397 398 2.738846 ACTTTCTGTTCTGCGTGCATAG 59.261 45.455 0.00 0.00 0.00 2.23
398 399 2.480037 CACTTTCTGTTCTGCGTGCATA 59.520 45.455 0.00 0.00 0.00 3.14
399 400 1.265095 CACTTTCTGTTCTGCGTGCAT 59.735 47.619 0.00 0.00 0.00 3.96
400 401 0.657312 CACTTTCTGTTCTGCGTGCA 59.343 50.000 0.00 0.00 0.00 4.57
401 402 0.937304 TCACTTTCTGTTCTGCGTGC 59.063 50.000 0.00 0.00 0.00 5.34
402 403 2.158449 GGATCACTTTCTGTTCTGCGTG 59.842 50.000 0.00 0.00 0.00 5.34
403 404 2.417719 GGATCACTTTCTGTTCTGCGT 58.582 47.619 0.00 0.00 0.00 5.24
404 405 1.734465 GGGATCACTTTCTGTTCTGCG 59.266 52.381 0.00 0.00 0.00 5.18
405 406 2.087646 GGGGATCACTTTCTGTTCTGC 58.912 52.381 0.00 0.00 0.00 4.26
406 407 2.350522 CGGGGATCACTTTCTGTTCTG 58.649 52.381 0.00 0.00 0.00 3.02
407 408 1.279271 CCGGGGATCACTTTCTGTTCT 59.721 52.381 0.00 0.00 0.00 3.01
408 409 1.278127 TCCGGGGATCACTTTCTGTTC 59.722 52.381 0.00 0.00 0.00 3.18
409 410 1.003233 GTCCGGGGATCACTTTCTGTT 59.997 52.381 0.00 0.00 0.00 3.16
410 411 0.613777 GTCCGGGGATCACTTTCTGT 59.386 55.000 0.00 0.00 0.00 3.41
411 412 0.460284 CGTCCGGGGATCACTTTCTG 60.460 60.000 0.00 0.00 0.00 3.02
412 413 1.614241 CCGTCCGGGGATCACTTTCT 61.614 60.000 0.00 0.00 0.00 2.52
413 414 1.153429 CCGTCCGGGGATCACTTTC 60.153 63.158 0.00 0.00 0.00 2.62
414 415 2.987125 CCGTCCGGGGATCACTTT 59.013 61.111 0.00 0.00 0.00 2.66
430 431 0.034896 TCTCTTTGACGGTCAAGCCC 59.965 55.000 21.47 0.00 37.70 5.19
431 432 1.000955 TCTCTCTTTGACGGTCAAGCC 59.999 52.381 21.47 0.00 37.70 4.35
432 433 2.029828 TCTCTCTCTTTGACGGTCAAGC 60.030 50.000 21.47 0.00 37.70 4.01
433 434 3.924918 TCTCTCTCTTTGACGGTCAAG 57.075 47.619 21.47 15.92 37.70 3.02
434 435 4.665833 TTTCTCTCTCTTTGACGGTCAA 57.334 40.909 19.07 19.07 34.03 3.18
435 436 4.665833 TTTTCTCTCTCTTTGACGGTCA 57.334 40.909 6.76 6.76 0.00 4.02
436 437 5.290386 TCTTTTTCTCTCTCTTTGACGGTC 58.710 41.667 0.00 0.00 0.00 4.79
437 438 5.069251 TCTCTTTTTCTCTCTCTTTGACGGT 59.931 40.000 0.00 0.00 0.00 4.83
438 439 5.533482 TCTCTTTTTCTCTCTCTTTGACGG 58.467 41.667 0.00 0.00 0.00 4.79
439 440 6.090628 CCATCTCTTTTTCTCTCTCTTTGACG 59.909 42.308 0.00 0.00 0.00 4.35
440 441 6.371271 CCCATCTCTTTTTCTCTCTCTTTGAC 59.629 42.308 0.00 0.00 0.00 3.18
441 442 6.471146 CCCATCTCTTTTTCTCTCTCTTTGA 58.529 40.000 0.00 0.00 0.00 2.69
442 443 5.123661 GCCCATCTCTTTTTCTCTCTCTTTG 59.876 44.000 0.00 0.00 0.00 2.77
443 444 5.014018 AGCCCATCTCTTTTTCTCTCTCTTT 59.986 40.000 0.00 0.00 0.00 2.52
444 445 4.535692 AGCCCATCTCTTTTTCTCTCTCTT 59.464 41.667 0.00 0.00 0.00 2.85
445 446 4.103342 AGCCCATCTCTTTTTCTCTCTCT 58.897 43.478 0.00 0.00 0.00 3.10
446 447 4.486125 AGCCCATCTCTTTTTCTCTCTC 57.514 45.455 0.00 0.00 0.00 3.20
447 448 4.567327 CCAAGCCCATCTCTTTTTCTCTCT 60.567 45.833 0.00 0.00 0.00 3.10
448 449 3.693578 CCAAGCCCATCTCTTTTTCTCTC 59.306 47.826 0.00 0.00 0.00 3.20
449 450 3.694926 CCAAGCCCATCTCTTTTTCTCT 58.305 45.455 0.00 0.00 0.00 3.10
450 451 2.165234 GCCAAGCCCATCTCTTTTTCTC 59.835 50.000 0.00 0.00 0.00 2.87
451 452 2.174360 GCCAAGCCCATCTCTTTTTCT 58.826 47.619 0.00 0.00 0.00 2.52
452 453 1.135286 CGCCAAGCCCATCTCTTTTTC 60.135 52.381 0.00 0.00 0.00 2.29
453 454 0.890683 CGCCAAGCCCATCTCTTTTT 59.109 50.000 0.00 0.00 0.00 1.94
454 455 0.038166 TCGCCAAGCCCATCTCTTTT 59.962 50.000 0.00 0.00 0.00 2.27
455 456 0.257039 ATCGCCAAGCCCATCTCTTT 59.743 50.000 0.00 0.00 0.00 2.52
456 457 0.179034 GATCGCCAAGCCCATCTCTT 60.179 55.000 0.00 0.00 0.00 2.85
457 458 1.053264 AGATCGCCAAGCCCATCTCT 61.053 55.000 0.00 0.00 0.00 3.10
466 467 2.587194 CGCCCTCAGATCGCCAAG 60.587 66.667 0.00 0.00 0.00 3.61
641 642 1.487976 TCCATCTCTTGATGCACTCCC 59.512 52.381 0.00 0.00 46.43 4.30
731 732 3.388913 CAACTATCTCCTCCCTTTCCCT 58.611 50.000 0.00 0.00 0.00 4.20
763 764 0.831307 ATAACTCCTCCCGCCTCAAC 59.169 55.000 0.00 0.00 0.00 3.18
770 771 1.141053 CCTTTCCCATAACTCCTCCCG 59.859 57.143 0.00 0.00 0.00 5.14
771 772 1.133761 GCCTTTCCCATAACTCCTCCC 60.134 57.143 0.00 0.00 0.00 4.30
823 824 7.665974 AGGAGAAAATAAGACCGAAATCAACTT 59.334 33.333 0.00 0.00 0.00 2.66
826 827 7.165485 TCAGGAGAAAATAAGACCGAAATCAA 58.835 34.615 0.00 0.00 0.00 2.57
841 842 4.082125 GGAGGCAGAAATTCAGGAGAAAA 58.918 43.478 0.00 0.00 37.29 2.29
857 858 4.021229 TCACGAATTAACTAGAGGAGGCA 58.979 43.478 0.00 0.00 0.00 4.75
877 878 6.268617 CCATCTAGAATCACTCCCAGTAATCA 59.731 42.308 0.00 0.00 0.00 2.57
912 913 5.858049 CGCAGCAAACTTGATCTTCAAATTA 59.142 36.000 0.00 0.00 35.73 1.40
966 967 3.308401 AGCAAAGGGAAAATGGACAACT 58.692 40.909 0.00 0.00 0.00 3.16
998 999 2.432874 TCGAACCCAAGAACAACAGAGA 59.567 45.455 0.00 0.00 0.00 3.10
1004 1005 2.043992 TCCTCTCGAACCCAAGAACAA 58.956 47.619 0.00 0.00 0.00 2.83
1017 1018 1.840737 TCACCTTCCTCTTCCTCTCG 58.159 55.000 0.00 0.00 0.00 4.04
1041 1042 2.625352 CCTCTTCTCCTGGGACATCTCA 60.625 54.545 0.00 0.00 38.20 3.27
1082 1083 0.250467 GTTCTTCTGCTGCTGGTCCA 60.250 55.000 6.69 0.00 0.00 4.02
1100 1101 3.334054 GCCTGCCCTCCTCTTGGT 61.334 66.667 0.00 0.00 34.23 3.67
1162 1163 6.686630 ACACATATTTTTCCTTGCGAATCAA 58.313 32.000 0.00 0.00 0.00 2.57
1272 1273 2.421073 CTCAAATTCTGCCAGCAATCGA 59.579 45.455 0.00 0.00 0.00 3.59
1386 1387 2.619147 TCACGGAACTTCACGACAAAA 58.381 42.857 0.00 0.00 0.00 2.44
1403 1404 3.161866 GAGTCCCTATCCCTCTGATCAC 58.838 54.545 0.00 0.00 34.76 3.06
1549 1550 9.775854 CTTCTCAGTCATAAGTTCATAATCCAT 57.224 33.333 0.00 0.00 0.00 3.41
1633 1634 4.872691 CAGGTACTCATCAACAATGACTCC 59.127 45.833 0.00 0.00 39.52 3.85
1698 1699 1.183030 TCGGGTTGATGGAGACGTGT 61.183 55.000 0.00 0.00 0.00 4.49
1775 1778 1.000717 CCTACCAAACCGCAAAACAGG 60.001 52.381 0.00 0.00 0.00 4.00
1802 1805 3.347216 AGTGCTACAAAATCTTGCCGAT 58.653 40.909 0.00 0.00 35.84 4.18
1805 1808 2.819608 TGGAGTGCTACAAAATCTTGCC 59.180 45.455 0.00 0.00 35.84 4.52
1836 1839 0.673956 GAAGTGAACTCCGGCTTCCC 60.674 60.000 0.00 0.00 33.30 3.97
1852 1855 1.396301 GAGCCACTCGAATTGCAGAAG 59.604 52.381 0.00 0.00 0.00 2.85
1854 1857 0.391661 GGAGCCACTCGAATTGCAGA 60.392 55.000 0.00 0.00 0.00 4.26
1855 1858 0.392193 AGGAGCCACTCGAATTGCAG 60.392 55.000 0.00 0.00 0.00 4.41
1879 1882 4.013050 CCTCACAGAATTCCTTTCCTTCC 58.987 47.826 0.65 0.00 34.67 3.46
1894 1897 5.163374 TGGAACATCACAGATATCCTCACAG 60.163 44.000 0.00 0.00 0.00 3.66
1903 1906 3.776969 AGCCTCTTGGAACATCACAGATA 59.223 43.478 0.00 0.00 39.30 1.98
1948 1951 4.141528 CCACTTCCTTGATAGCTTCCTCAT 60.142 45.833 0.00 0.00 0.00 2.90
1983 1986 0.672401 ACCGTTACCACCAGATTGCG 60.672 55.000 0.00 0.00 0.00 4.85
2015 2018 6.404074 CCTGCATAACAAGATCAGAAAACTCC 60.404 42.308 0.00 0.00 0.00 3.85
2025 2028 1.599542 GCCGTCCTGCATAACAAGATC 59.400 52.381 0.00 0.00 0.00 2.75
2032 2035 4.136511 TCGCGCCGTCCTGCATAA 62.137 61.111 0.00 0.00 0.00 1.90
2108 2111 3.938963 GTGTTGATGAAATAGGAAGCCGA 59.061 43.478 0.00 0.00 0.00 5.54
2110 2113 4.273318 AGGTGTTGATGAAATAGGAAGCC 58.727 43.478 0.00 0.00 0.00 4.35
2119 2122 2.270352 AGGCGAAGGTGTTGATGAAA 57.730 45.000 0.00 0.00 0.00 2.69
2133 2136 1.371183 CACCTTCCAGACAAGGCGA 59.629 57.895 0.00 0.00 46.34 5.54
2166 2169 2.266279 CTTGGAAGGTCCCTCCAGTAA 58.734 52.381 9.26 0.00 35.03 2.24
2302 2305 1.192803 GGAGTCCTTTCCCACTCGGT 61.193 60.000 0.41 0.00 40.11 4.69
2306 2309 0.905357 CGATGGAGTCCTTTCCCACT 59.095 55.000 11.33 0.00 36.35 4.00
2352 2355 1.611556 GTACCAGACCCCGACCCTT 60.612 63.158 0.00 0.00 0.00 3.95
2379 2382 0.037303 CAGGGGCTGAAAAGAGCAGA 59.963 55.000 0.00 0.00 41.08 4.26
2402 2405 3.339093 CCCCAACCCTCCTGACCC 61.339 72.222 0.00 0.00 0.00 4.46
2445 2448 4.120331 GCCAACAGGCGCATCCAC 62.120 66.667 10.83 0.00 38.93 4.02
2530 2533 2.298729 GCTTTTACATTCCCCTGCACAA 59.701 45.455 0.00 0.00 0.00 3.33
2631 2634 7.023171 TCTTTTTACCTATGCCTAGACCAAA 57.977 36.000 0.00 0.00 0.00 3.28
2632 2635 6.442564 TCTCTTTTTACCTATGCCTAGACCAA 59.557 38.462 0.00 0.00 0.00 3.67
2680 2683 8.019656 AGAAAAGTTGATATCACTACCCGTAT 57.980 34.615 4.48 0.00 0.00 3.06
2761 2764 3.283751 CCACAAACCCTCTTACAACACA 58.716 45.455 0.00 0.00 0.00 3.72
2764 2767 2.235891 CCCCACAAACCCTCTTACAAC 58.764 52.381 0.00 0.00 0.00 3.32
2884 2887 3.214328 GCACCTTTCTTCTCTCCAACAA 58.786 45.455 0.00 0.00 0.00 2.83
3027 3030 5.722021 AAAAATTAAATCCGCACAGGTCT 57.278 34.783 0.00 0.00 41.99 3.85
3031 3034 9.352784 TCTGAAATAAAAATTAAATCCGCACAG 57.647 29.630 0.00 0.00 0.00 3.66
3050 3053 6.801539 TTTATTCAAGTGCGACTCTGAAAT 57.198 33.333 12.69 0.00 32.93 2.17
3278 3282 7.598493 CCAAGATAAATGTTTTTCGTTCCATGT 59.402 33.333 0.00 0.00 0.00 3.21
3333 3337 2.891191 AACCACCCACGGATAAACAT 57.109 45.000 0.00 0.00 0.00 2.71
3453 3457 3.144506 CAGCCCATATCAGCCAAGTTAG 58.855 50.000 0.00 0.00 0.00 2.34
3528 3532 5.646360 GCCCACTACACATTACATACAACTT 59.354 40.000 0.00 0.00 0.00 2.66
3531 3535 5.167303 TGCCCACTACACATTACATACAA 57.833 39.130 0.00 0.00 0.00 2.41
3545 3549 0.696501 GGGAACTTCCTTGCCCACTA 59.303 55.000 7.77 0.00 40.39 2.74
3791 3797 2.028112 AGGTGTGTAAGTCATCGTGCAT 60.028 45.455 0.00 0.00 0.00 3.96
3866 3873 3.392882 CCACATTTCAACCTTTCAAGCC 58.607 45.455 0.00 0.00 0.00 4.35
3976 3983 5.979656 AAGTAGTTAGCTCTCCCTCTCTA 57.020 43.478 0.00 0.00 0.00 2.43
3995 4006 3.436001 CGGTCTCCGTGCAATAAGT 57.564 52.632 0.00 0.00 42.73 2.24
4073 4086 2.904434 ACTCCGGTGTTATCCAGAAGTT 59.096 45.455 2.61 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.