Multiple sequence alignment - TraesCS2A01G247800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G247800 chr2A 100.000 7265 0 0 1872 9136 367646076 367653340 0.000000e+00 13417.0
1 TraesCS2A01G247800 chr2A 100.000 1230 0 0 1 1230 367644205 367645434 0.000000e+00 2272.0
2 TraesCS2A01G247800 chr2A 95.808 167 5 2 4952 5117 184561150 184561315 1.510000e-67 268.0
3 TraesCS2A01G247800 chr2B 96.518 4624 104 19 1886 6476 366020766 366016167 0.000000e+00 7594.0
4 TraesCS2A01G247800 chr2B 95.935 2042 48 14 6478 8517 366016136 366014128 0.000000e+00 3278.0
5 TraesCS2A01G247800 chr2B 94.024 502 16 6 715 1207 366021621 366021125 0.000000e+00 749.0
6 TraesCS2A01G247800 chr2B 90.520 538 50 1 1 538 603912346 603912882 0.000000e+00 710.0
7 TraesCS2A01G247800 chr2B 89.362 423 34 5 8722 9136 366009000 366008581 1.050000e-143 521.0
8 TraesCS2A01G247800 chr2B 97.753 89 2 0 3073 3161 10083461 10083549 4.420000e-33 154.0
9 TraesCS2A01G247800 chr2D 96.756 2158 32 4 3400 5540 296362488 296364624 0.000000e+00 3563.0
10 TraesCS2A01G247800 chr2D 96.291 2049 60 6 6477 8517 296371037 296373077 0.000000e+00 3349.0
11 TraesCS2A01G247800 chr2D 96.732 1438 26 6 1883 3312 296360770 296362194 0.000000e+00 2375.0
12 TraesCS2A01G247800 chr2D 97.682 949 21 1 5529 6476 296370059 296371007 0.000000e+00 1629.0
13 TraesCS2A01G247800 chr2D 97.254 437 12 0 749 1185 296359895 296360331 0.000000e+00 741.0
14 TraesCS2A01G247800 chr2D 88.652 423 36 6 8722 9136 296373669 296374087 1.060000e-138 505.0
15 TraesCS2A01G247800 chr2D 80.241 415 71 9 8726 9132 512454740 512454329 1.490000e-77 302.0
16 TraesCS2A01G247800 chr2D 95.181 166 7 1 4953 5117 299891550 299891715 2.530000e-65 261.0
17 TraesCS2A01G247800 chr2D 94.949 99 3 2 3064 3161 25037872 25037969 4.420000e-33 154.0
18 TraesCS2A01G247800 chr2D 100.000 30 0 0 8361 8390 76875189 76875218 1.000000e-03 56.5
19 TraesCS2A01G247800 chr2D 96.875 32 1 0 8365 8396 25658925 25658956 5.000000e-03 54.7
20 TraesCS2A01G247800 chr4A 91.408 419 34 2 3207 3624 673955340 673955757 2.860000e-159 573.0
21 TraesCS2A01G247800 chr4A 81.614 223 32 8 243 461 30105778 30105995 9.430000e-40 176.0
22 TraesCS2A01G247800 chr1D 91.232 422 35 1 3211 3632 269988782 269989201 2.860000e-159 573.0
23 TraesCS2A01G247800 chr1D 79.752 805 106 30 8370 9136 416268229 416267444 1.750000e-146 531.0
24 TraesCS2A01G247800 chr1D 95.876 97 4 0 3068 3164 308266889 308266793 3.410000e-34 158.0
25 TraesCS2A01G247800 chr7A 91.932 409 31 1 3215 3623 327910550 327910144 1.030000e-158 571.0
26 TraesCS2A01G247800 chr7A 78.941 831 108 35 8370 9136 162045242 162044415 3.810000e-138 503.0
27 TraesCS2A01G247800 chr7A 78.533 736 116 26 8394 9098 566307050 566307774 6.510000e-121 446.0
28 TraesCS2A01G247800 chr7A 78.125 736 119 26 8394 9098 566295922 566296646 6.550000e-116 429.0
29 TraesCS2A01G247800 chr7A 84.319 389 47 8 8722 9098 566267415 566267801 1.450000e-97 368.0
30 TraesCS2A01G247800 chr7A 84.319 389 47 8 8722 9098 566284771 566285157 1.450000e-97 368.0
31 TraesCS2A01G247800 chr7A 84.319 389 47 8 8722 9098 566319869 566320255 1.450000e-97 368.0
32 TraesCS2A01G247800 chr7A 85.223 291 29 10 8859 9136 162044128 162043839 4.170000e-73 287.0
33 TraesCS2A01G247800 chr6A 91.566 415 32 2 3213 3626 203774027 203773615 3.700000e-158 569.0
34 TraesCS2A01G247800 chr6A 92.571 175 11 2 4956 5129 91902568 91902395 5.480000e-62 250.0
35 TraesCS2A01G247800 chr1B 91.169 419 36 1 3211 3629 117271568 117271985 1.330000e-157 568.0
36 TraesCS2A01G247800 chr1B 92.523 107 6 2 3076 3181 164770450 164770345 1.590000e-32 152.0
37 TraesCS2A01G247800 chr7B 91.148 418 33 3 3214 3629 570461952 570462367 1.720000e-156 564.0
38 TraesCS2A01G247800 chr3B 91.505 412 31 3 3214 3623 148501326 148500917 1.720000e-156 564.0
39 TraesCS2A01G247800 chr3B 81.081 296 43 12 8847 9132 53551249 53550957 3.320000e-54 224.0
40 TraesCS2A01G247800 chr3B 75.568 176 33 8 6 176 141829959 141830129 2.730000e-10 78.7
41 TraesCS2A01G247800 chr7D 80.112 714 87 25 8452 9135 71622527 71621839 1.780000e-131 481.0
42 TraesCS2A01G247800 chr7D 100.000 29 0 0 8362 8390 117270749 117270777 5.000000e-03 54.7
43 TraesCS2A01G247800 chr4B 81.239 565 69 25 8593 9136 65940106 65940654 1.100000e-113 422.0
44 TraesCS2A01G247800 chr4B 87.719 171 21 0 8370 8540 65938822 65938992 5.590000e-47 200.0
45 TraesCS2A01G247800 chr4D 77.403 801 105 32 8366 9133 487791496 487792253 3.070000e-109 407.0
46 TraesCS2A01G247800 chr1A 84.024 338 43 3 8810 9136 511600208 511600545 1.910000e-81 315.0
47 TraesCS2A01G247800 chr1A 95.789 95 3 1 3071 3164 477033553 477033459 1.590000e-32 152.0
48 TraesCS2A01G247800 chr1A 96.875 32 1 0 8365 8396 3661508 3661539 5.000000e-03 54.7
49 TraesCS2A01G247800 chr5A 92.147 191 10 4 4957 5144 320214405 320214217 1.960000e-66 265.0
50 TraesCS2A01G247800 chr5A 100.000 29 0 0 8367 8395 671550985 671550957 5.000000e-03 54.7
51 TraesCS2A01G247800 chr3D 95.706 163 6 1 4957 5118 87926161 87925999 2.530000e-65 261.0
52 TraesCS2A01G247800 chr3A 92.655 177 10 3 4956 5130 600920854 600921029 1.520000e-62 252.0
53 TraesCS2A01G247800 chr3A 89.286 196 13 6 4957 5150 625536909 625536720 1.190000e-58 239.0
54 TraesCS2A01G247800 chrUn 98.864 88 1 0 3074 3161 62663400 62663487 3.410000e-34 158.0
55 TraesCS2A01G247800 chr6B 95.745 94 4 0 3067 3160 417949024 417949117 1.590000e-32 152.0
56 TraesCS2A01G247800 chr5D 96.703 91 3 0 3073 3163 297738429 297738339 1.590000e-32 152.0
57 TraesCS2A01G247800 chr5D 94.286 35 2 0 8362 8396 520113202 520113236 5.000000e-03 54.7
58 TraesCS2A01G247800 chr5B 88.608 79 7 2 425 502 273081989 273081912 2.720000e-15 95.3
59 TraesCS2A01G247800 chr5B 88.312 77 7 2 425 500 273089282 273089207 3.510000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G247800 chr2A 367644205 367653340 9135 False 7844.500000 13417 100.000000 1 9136 2 chr2A.!!$F2 9135
1 TraesCS2A01G247800 chr2B 366014128 366021621 7493 True 3873.666667 7594 95.492333 715 8517 3 chr2B.!!$R2 7802
2 TraesCS2A01G247800 chr2B 603912346 603912882 536 False 710.000000 710 90.520000 1 538 1 chr2B.!!$F2 537
3 TraesCS2A01G247800 chr2D 296359895 296364624 4729 False 2226.333333 3563 96.914000 749 5540 3 chr2D.!!$F5 4791
4 TraesCS2A01G247800 chr2D 296370059 296374087 4028 False 1827.666667 3349 94.208333 5529 9136 3 chr2D.!!$F6 3607
5 TraesCS2A01G247800 chr1D 416267444 416268229 785 True 531.000000 531 79.752000 8370 9136 1 chr1D.!!$R2 766
6 TraesCS2A01G247800 chr7A 566307050 566307774 724 False 446.000000 446 78.533000 8394 9098 1 chr7A.!!$F4 704
7 TraesCS2A01G247800 chr7A 566295922 566296646 724 False 429.000000 429 78.125000 8394 9098 1 chr7A.!!$F3 704
8 TraesCS2A01G247800 chr7A 162043839 162045242 1403 True 395.000000 503 82.082000 8370 9136 2 chr7A.!!$R2 766
9 TraesCS2A01G247800 chr7D 71621839 71622527 688 True 481.000000 481 80.112000 8452 9135 1 chr7D.!!$R1 683
10 TraesCS2A01G247800 chr4B 65938822 65940654 1832 False 311.000000 422 84.479000 8370 9136 2 chr4B.!!$F1 766
11 TraesCS2A01G247800 chr4D 487791496 487792253 757 False 407.000000 407 77.403000 8366 9133 1 chr4D.!!$F1 767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
510 511 0.036294 AACCTAGTCGCTTCTTGGGC 60.036 55.000 9.33 0.0 35.31 5.36 F
790 800 0.456312 GTCTTGACGCCGAAGTCGAT 60.456 55.000 1.43 0.0 43.70 3.59 F
1229 1239 0.669318 TTCCGTCTTGGTCACGATGC 60.669 55.000 0.00 0.0 39.75 3.91 F
1940 1950 1.133253 CGTGCGCTGGAATCTTGTG 59.867 57.895 9.73 0.0 0.00 3.33 F
1945 1955 1.675641 GCTGGAATCTTGTGCCCGT 60.676 57.895 0.00 0.0 0.00 5.28 F
3290 3312 0.672711 GTCAAACGGGGTAGCTCCAC 60.673 60.000 0.00 0.0 38.11 4.02 F
4023 4253 1.195674 GAGAGTGAAAAGAAGCGTGCC 59.804 52.381 0.00 0.0 0.00 5.01 F
4532 4780 2.819608 CACCTCCCCAACATACTTTGTG 59.180 50.000 0.00 0.0 38.99 3.33 F
5320 5568 0.620556 AACTCCAGCGGTCCAATCAT 59.379 50.000 0.00 0.0 0.00 2.45 F
6308 6557 0.041400 CATGCAACAACGAGCGAACA 60.041 50.000 0.00 0.0 0.00 3.18 F
7514 7800 0.387622 CCATTGCTTGTCTTGCGTGG 60.388 55.000 0.00 0.0 34.33 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 1955 0.538516 ACCACCAAAAGCATACCGCA 60.539 50.000 0.00 0.00 46.13 5.69 R
2729 2744 5.296151 CAGGGTACTGGATGTCACATAAT 57.704 43.478 0.00 0.00 41.13 1.28 R
3145 3167 0.033306 GAAGGTACTCCCTCCGTCCT 60.033 60.000 0.00 0.00 45.47 3.85 R
3218 3240 0.183492 AGCAGAGCAGTCCCAAACAA 59.817 50.000 0.00 0.00 0.00 2.83 R
3346 3368 0.328258 GCACCCCCTAAAGAGCTTCA 59.672 55.000 0.00 0.00 0.00 3.02 R
4152 4387 1.807742 CACATTTGGCAAAGGCATTGG 59.192 47.619 23.06 5.65 43.71 3.16 R
5313 5561 0.804544 CCAGCGCTTGCAATGATTGG 60.805 55.000 7.50 0.00 42.66 3.16 R
5798 6047 1.195442 TCACGGCCATGACCTAACCA 61.195 55.000 0.00 0.00 0.00 3.67 R
7058 7344 1.004560 TTCTCCTCTTGTGCTGCCG 60.005 57.895 0.00 0.00 0.00 5.69 R
7758 8045 1.153005 CCCCTGGCAGAAGCTGATC 60.153 63.158 17.94 0.00 41.70 2.92 R
8634 10132 0.103390 TTTCAAGCTCACCGACGACA 59.897 50.000 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 7.694388 TTATGATCCATCTTTAAACGACGAG 57.306 36.000 0.00 0.00 0.00 4.18
57 58 0.956410 ACGACGAGGGAGACACTCAG 60.956 60.000 0.00 0.00 34.66 3.35
59 60 2.259875 GACGAGGGAGACACTCAGCG 62.260 65.000 0.00 0.00 34.66 5.18
106 107 4.819105 TCAAGAACATAACATCCGGACT 57.181 40.909 6.12 0.00 0.00 3.85
111 112 4.341520 AGAACATAACATCCGGACTCCTAC 59.658 45.833 6.12 0.00 0.00 3.18
116 117 0.460311 CATCCGGACTCCTACGCTTT 59.540 55.000 6.12 0.00 0.00 3.51
135 136 4.207841 GCTTTTGAACATTCAGAAGTGCAC 59.792 41.667 20.07 9.40 45.78 4.57
136 137 4.979943 TTTGAACATTCAGAAGTGCACA 57.020 36.364 21.04 0.00 38.61 4.57
178 179 3.030291 AGCCACAACAATTCCAACTCAA 58.970 40.909 0.00 0.00 0.00 3.02
227 228 1.379977 ACCTCCCTTCGCTGATCGA 60.380 57.895 0.00 0.00 46.88 3.59
238 239 1.469767 CGCTGATCGATCACAACTCCA 60.470 52.381 23.99 1.43 41.67 3.86
256 257 3.888930 CTCCAATTACAACACCACCACTT 59.111 43.478 0.00 0.00 0.00 3.16
258 259 4.098654 TCCAATTACAACACCACCACTTTG 59.901 41.667 0.00 0.00 0.00 2.77
266 267 1.700739 CACCACCACTTTGGGTAGGTA 59.299 52.381 6.09 0.00 43.37 3.08
271 272 2.433239 ACCACTTTGGGTAGGTATAGCG 59.567 50.000 0.00 0.00 43.37 4.26
274 275 2.502538 ACTTTGGGTAGGTATAGCGCAA 59.497 45.455 11.47 0.00 0.00 4.85
284 285 2.290641 GGTATAGCGCAACAATTCCCTG 59.709 50.000 11.47 0.00 0.00 4.45
285 286 0.740737 ATAGCGCAACAATTCCCTGC 59.259 50.000 11.47 0.00 0.00 4.85
294 295 4.377328 GCAACAATTCCCTGCGAAAAATTC 60.377 41.667 0.00 0.00 33.08 2.17
307 308 4.437820 GCGAAAAATTCAGACTCACACAAC 59.562 41.667 0.00 0.00 0.00 3.32
311 312 7.461416 CGAAAAATTCAGACTCACACAACAAAC 60.461 37.037 0.00 0.00 0.00 2.93
322 323 4.335315 TCACACAACAAACTGAACCTGATC 59.665 41.667 0.00 0.00 0.00 2.92
328 329 5.296151 ACAAACTGAACCTGATCAAGAGA 57.704 39.130 0.00 0.00 0.00 3.10
342 343 4.890158 TCAAGAGAATCAGGCAGTACAA 57.110 40.909 0.00 0.00 37.82 2.41
343 344 4.569943 TCAAGAGAATCAGGCAGTACAAC 58.430 43.478 0.00 0.00 37.82 3.32
350 351 5.426833 AGAATCAGGCAGTACAACTTATCCT 59.573 40.000 0.00 0.00 0.00 3.24
357 358 5.506982 GGCAGTACAACTTATCCTACTACGG 60.507 48.000 0.00 0.00 0.00 4.02
380 381 1.755395 ACATGCAGCGGCCATCAAT 60.755 52.632 6.32 0.00 40.13 2.57
381 382 1.324740 ACATGCAGCGGCCATCAATT 61.325 50.000 6.32 0.00 40.13 2.32
383 384 2.025156 GCAGCGGCCATCAATTCG 59.975 61.111 2.24 0.00 0.00 3.34
403 404 4.851843 TCGTAGTGGAGATAGAGAACCAA 58.148 43.478 0.00 0.00 34.11 3.67
405 406 4.496010 CGTAGTGGAGATAGAGAACCAACG 60.496 50.000 0.00 0.00 32.93 4.10
417 418 0.458669 AACCAACGACGACACTCAGT 59.541 50.000 0.00 0.00 0.00 3.41
428 429 0.244994 ACACTCAGTGCATCGACCTC 59.755 55.000 4.13 0.00 36.98 3.85
435 436 2.583593 GCATCGACCTCGGACAGC 60.584 66.667 0.00 0.00 40.29 4.40
508 509 2.347731 GGAAACCTAGTCGCTTCTTGG 58.652 52.381 4.58 4.58 36.64 3.61
510 511 0.036294 AACCTAGTCGCTTCTTGGGC 60.036 55.000 9.33 0.00 35.31 5.36
538 539 4.094294 TCCCTTGCATAAGAAAACGATTCG 59.906 41.667 4.14 4.14 35.92 3.34
539 540 4.142687 CCCTTGCATAAGAAAACGATTCGT 60.143 41.667 5.75 5.75 37.67 3.85
540 541 5.022021 CCTTGCATAAGAAAACGATTCGTC 58.978 41.667 12.80 0.00 36.00 4.20
541 542 5.390461 CCTTGCATAAGAAAACGATTCGTCA 60.390 40.000 12.80 0.00 36.00 4.35
542 543 5.599359 TGCATAAGAAAACGATTCGTCAA 57.401 34.783 12.80 0.00 39.99 3.18
543 544 5.991568 TGCATAAGAAAACGATTCGTCAAA 58.008 33.333 12.80 0.00 39.99 2.69
544 545 6.431278 TGCATAAGAAAACGATTCGTCAAAA 58.569 32.000 12.80 0.00 39.99 2.44
545 546 6.913132 TGCATAAGAAAACGATTCGTCAAAAA 59.087 30.769 12.80 0.00 39.99 1.94
546 547 7.096803 TGCATAAGAAAACGATTCGTCAAAAAC 60.097 33.333 12.80 2.08 39.99 2.43
547 548 7.112984 GCATAAGAAAACGATTCGTCAAAAACT 59.887 33.333 12.80 4.22 39.99 2.66
548 549 6.790336 AAGAAAACGATTCGTCAAAAACTG 57.210 33.333 12.80 0.00 39.99 3.16
549 550 4.733405 AGAAAACGATTCGTCAAAAACTGC 59.267 37.500 12.80 0.00 39.99 4.40
550 551 3.963383 AACGATTCGTCAAAAACTGCT 57.037 38.095 12.80 0.00 39.99 4.24
551 552 3.963383 ACGATTCGTCAAAAACTGCTT 57.037 38.095 5.75 0.00 33.69 3.91
552 553 4.287238 ACGATTCGTCAAAAACTGCTTT 57.713 36.364 5.75 0.00 33.69 3.51
553 554 4.668289 ACGATTCGTCAAAAACTGCTTTT 58.332 34.783 5.75 0.00 33.69 2.27
554 555 5.099575 ACGATTCGTCAAAAACTGCTTTTT 58.900 33.333 5.75 0.00 35.37 1.94
592 593 8.715190 TTTTTAACAGATTTTTAGGGGCTACT 57.285 30.769 0.00 0.00 0.00 2.57
593 594 8.715190 TTTTAACAGATTTTTAGGGGCTACTT 57.285 30.769 0.00 0.00 0.00 2.24
594 595 8.715190 TTTAACAGATTTTTAGGGGCTACTTT 57.285 30.769 0.00 0.00 0.00 2.66
595 596 9.810870 TTTAACAGATTTTTAGGGGCTACTTTA 57.189 29.630 0.00 0.00 0.00 1.85
596 597 7.698506 AACAGATTTTTAGGGGCTACTTTAC 57.301 36.000 0.00 0.00 0.00 2.01
597 598 6.786122 ACAGATTTTTAGGGGCTACTTTACA 58.214 36.000 0.00 0.00 0.00 2.41
598 599 7.410991 ACAGATTTTTAGGGGCTACTTTACAT 58.589 34.615 0.00 0.00 0.00 2.29
599 600 7.893833 ACAGATTTTTAGGGGCTACTTTACATT 59.106 33.333 0.00 0.00 0.00 2.71
600 601 9.403583 CAGATTTTTAGGGGCTACTTTACATTA 57.596 33.333 0.00 0.00 0.00 1.90
601 602 9.404848 AGATTTTTAGGGGCTACTTTACATTAC 57.595 33.333 0.00 0.00 0.00 1.89
602 603 9.404848 GATTTTTAGGGGCTACTTTACATTACT 57.595 33.333 0.00 0.00 0.00 2.24
603 604 8.797350 TTTTTAGGGGCTACTTTACATTACTC 57.203 34.615 0.00 0.00 0.00 2.59
604 605 6.490241 TTAGGGGCTACTTTACATTACTCC 57.510 41.667 0.00 0.00 0.00 3.85
605 606 3.715315 AGGGGCTACTTTACATTACTCCC 59.285 47.826 0.00 0.00 0.00 4.30
606 607 3.715315 GGGGCTACTTTACATTACTCCCT 59.285 47.826 0.00 0.00 0.00 4.20
607 608 4.202336 GGGGCTACTTTACATTACTCCCTC 60.202 50.000 0.00 0.00 0.00 4.30
608 609 4.202336 GGGCTACTTTACATTACTCCCTCC 60.202 50.000 0.00 0.00 0.00 4.30
609 610 4.654724 GGCTACTTTACATTACTCCCTCCT 59.345 45.833 0.00 0.00 0.00 3.69
610 611 5.130643 GGCTACTTTACATTACTCCCTCCTT 59.869 44.000 0.00 0.00 0.00 3.36
611 612 6.282167 GCTACTTTACATTACTCCCTCCTTC 58.718 44.000 0.00 0.00 0.00 3.46
612 613 5.695424 ACTTTACATTACTCCCTCCTTCC 57.305 43.478 0.00 0.00 0.00 3.46
613 614 5.098663 ACTTTACATTACTCCCTCCTTCCA 58.901 41.667 0.00 0.00 0.00 3.53
614 615 5.550403 ACTTTACATTACTCCCTCCTTCCAA 59.450 40.000 0.00 0.00 0.00 3.53
615 616 6.045106 ACTTTACATTACTCCCTCCTTCCAAA 59.955 38.462 0.00 0.00 0.00 3.28
616 617 6.457159 TTACATTACTCCCTCCTTCCAAAA 57.543 37.500 0.00 0.00 0.00 2.44
617 618 5.333566 ACATTACTCCCTCCTTCCAAAAA 57.666 39.130 0.00 0.00 0.00 1.94
704 705 9.938280 TCTATTTGAGAGATAAACCTTTTCGAA 57.062 29.630 0.00 0.00 0.00 3.71
705 706 9.974750 CTATTTGAGAGATAAACCTTTTCGAAC 57.025 33.333 0.00 0.00 0.00 3.95
706 707 6.462073 TTGAGAGATAAACCTTTTCGAACG 57.538 37.500 0.00 0.00 0.00 3.95
707 708 5.775686 TGAGAGATAAACCTTTTCGAACGA 58.224 37.500 0.00 0.00 0.00 3.85
708 709 6.218019 TGAGAGATAAACCTTTTCGAACGAA 58.782 36.000 0.00 5.53 0.00 3.85
709 710 6.365247 TGAGAGATAAACCTTTTCGAACGAAG 59.635 38.462 9.46 0.00 35.38 3.79
710 711 5.638234 AGAGATAAACCTTTTCGAACGAAGG 59.362 40.000 21.80 21.80 46.27 3.46
711 712 4.694037 AGATAAACCTTTTCGAACGAAGGG 59.306 41.667 25.31 20.10 45.35 3.95
712 713 2.625695 AACCTTTTCGAACGAAGGGA 57.374 45.000 25.31 11.25 45.35 4.20
713 714 2.165319 ACCTTTTCGAACGAAGGGAG 57.835 50.000 25.31 17.06 45.35 4.30
739 740 3.703001 ATTGAAGATGTTCACCGGTCT 57.297 42.857 2.59 0.00 42.60 3.85
772 782 1.168714 GAAAATCCGCAGAAGCTGGT 58.831 50.000 0.00 0.00 39.10 4.00
790 800 0.456312 GTCTTGACGCCGAAGTCGAT 60.456 55.000 1.43 0.00 43.70 3.59
877 887 2.166270 GCTCCAGGCTTCTCGTTTG 58.834 57.895 0.00 0.00 38.06 2.93
885 895 0.884704 GCTTCTCGTTTGGCCTGTGA 60.885 55.000 3.32 0.00 0.00 3.58
992 1002 1.566231 GGTTCCCCATCTCACCAGATT 59.434 52.381 0.00 0.00 37.25 2.40
1174 1184 4.770531 GGTCAAAACCTATACCCTTGCTTT 59.229 41.667 0.00 0.00 42.80 3.51
1177 1187 5.836358 TCAAAACCTATACCCTTGCTTTGTT 59.164 36.000 0.00 0.00 0.00 2.83
1179 1189 5.977489 AACCTATACCCTTGCTTTGTTTC 57.023 39.130 0.00 0.00 0.00 2.78
1214 1224 9.706691 TCTAAATAAATAGCCTGATTAGTTCCG 57.293 33.333 0.00 0.00 0.00 4.30
1215 1225 9.490379 CTAAATAAATAGCCTGATTAGTTCCGT 57.510 33.333 0.00 0.00 0.00 4.69
1216 1226 7.964604 AATAAATAGCCTGATTAGTTCCGTC 57.035 36.000 0.00 0.00 0.00 4.79
1217 1227 5.615925 AAATAGCCTGATTAGTTCCGTCT 57.384 39.130 0.00 0.00 0.00 4.18
1218 1228 5.615925 AATAGCCTGATTAGTTCCGTCTT 57.384 39.130 0.00 0.00 0.00 3.01
1219 1229 3.252974 AGCCTGATTAGTTCCGTCTTG 57.747 47.619 0.00 0.00 0.00 3.02
1220 1230 2.093447 AGCCTGATTAGTTCCGTCTTGG 60.093 50.000 0.00 0.00 40.09 3.61
1221 1231 2.354805 GCCTGATTAGTTCCGTCTTGGT 60.355 50.000 0.00 0.00 39.52 3.67
1222 1232 3.522553 CCTGATTAGTTCCGTCTTGGTC 58.477 50.000 0.00 0.00 39.52 4.02
1223 1233 3.056107 CCTGATTAGTTCCGTCTTGGTCA 60.056 47.826 0.00 0.00 39.52 4.02
1224 1234 3.921677 TGATTAGTTCCGTCTTGGTCAC 58.078 45.455 0.00 0.00 39.52 3.67
1225 1235 2.427232 TTAGTTCCGTCTTGGTCACG 57.573 50.000 0.00 0.00 39.52 4.35
1226 1236 1.608055 TAGTTCCGTCTTGGTCACGA 58.392 50.000 0.00 0.00 39.75 4.35
1227 1237 0.966920 AGTTCCGTCTTGGTCACGAT 59.033 50.000 0.00 0.00 39.75 3.73
1228 1238 1.068474 GTTCCGTCTTGGTCACGATG 58.932 55.000 0.00 0.00 39.75 3.84
1229 1239 0.669318 TTCCGTCTTGGTCACGATGC 60.669 55.000 0.00 0.00 39.75 3.91
1940 1950 1.133253 CGTGCGCTGGAATCTTGTG 59.867 57.895 9.73 0.00 0.00 3.33
1945 1955 1.675641 GCTGGAATCTTGTGCCCGT 60.676 57.895 0.00 0.00 0.00 5.28
1993 2003 3.900446 GCATTGCTGCCTGTTTCTT 57.100 47.368 0.16 0.00 42.88 2.52
2079 2089 7.197017 ACACTCACTACGATAAGCTTTCATAG 58.803 38.462 3.20 7.18 0.00 2.23
2120 2131 6.875195 CCCAGCAAATGTCTGTAATTGATTTT 59.125 34.615 0.00 0.00 0.00 1.82
2175 2186 4.853468 TGACACTTAATTCCATAGGCCA 57.147 40.909 5.01 0.00 0.00 5.36
2533 2544 5.951747 TCATTTCGGAGAAAGGAATGGAAAT 59.048 36.000 7.30 0.00 45.90 2.17
2729 2744 5.616270 TGGTGCATTTCTTGTTGTACTCTA 58.384 37.500 0.00 0.00 0.00 2.43
2863 2878 8.958506 TGGTATTCTTCTGTTTCTAGTCTAGAC 58.041 37.037 15.41 15.41 33.84 2.59
2901 2916 4.345859 TTTCGGGGTATATTACTGCAGG 57.654 45.455 19.93 0.00 0.00 4.85
2911 2926 7.888546 GGGTATATTACTGCAGGATTAATTGGT 59.111 37.037 19.93 6.01 0.00 3.67
2912 2927 8.730680 GGTATATTACTGCAGGATTAATTGGTG 58.269 37.037 19.93 0.00 0.00 4.17
2913 2928 4.981806 TTACTGCAGGATTAATTGGTGC 57.018 40.909 19.93 9.53 34.62 5.01
2914 2929 2.102578 ACTGCAGGATTAATTGGTGCC 58.897 47.619 19.93 0.00 32.99 5.01
2915 2930 2.101783 CTGCAGGATTAATTGGTGCCA 58.898 47.619 5.57 0.00 32.99 4.92
2916 2931 2.100252 CTGCAGGATTAATTGGTGCCAG 59.900 50.000 5.57 8.04 32.99 4.85
2917 2932 2.291475 TGCAGGATTAATTGGTGCCAGA 60.291 45.455 12.48 0.00 32.99 3.86
2918 2933 2.099756 GCAGGATTAATTGGTGCCAGAC 59.900 50.000 6.42 0.00 0.00 3.51
3178 3200 4.228824 AGTACCTTCCAACTGTCCTAACA 58.771 43.478 0.00 0.00 0.00 2.41
3181 3203 6.672657 AGTACCTTCCAACTGTCCTAACATAT 59.327 38.462 0.00 0.00 34.13 1.78
3218 3240 9.872721 GTATGTTCTAACTTTTACCTTAGAGCT 57.127 33.333 0.00 0.00 33.58 4.09
3245 3267 2.290323 GGGACTGCTCTGCTCCTTAAAA 60.290 50.000 0.00 0.00 0.00 1.52
3255 3277 3.356290 TGCTCCTTAAAATTCAGCTCCC 58.644 45.455 0.00 0.00 0.00 4.30
3266 3288 1.673767 TCAGCTCCCCTCCAGAAAAT 58.326 50.000 0.00 0.00 0.00 1.82
3290 3312 0.672711 GTCAAACGGGGTAGCTCCAC 60.673 60.000 0.00 0.00 38.11 4.02
3303 3325 1.662608 CTCCACGATATGCCGCTCT 59.337 57.895 0.00 0.00 0.00 4.09
3343 3365 2.536066 GGGGTACAGCTCCCAATTTTT 58.464 47.619 10.96 0.00 46.26 1.94
3568 3796 3.820467 TGTATGAAACTGCTCCAAAGTGG 59.180 43.478 0.00 0.00 39.43 4.00
3670 3898 7.951347 AGAAGTTGATAGATTTTGGATTGCT 57.049 32.000 0.00 0.00 0.00 3.91
3881 4111 1.678101 GCTATCCTTGCAATGGGTGTC 59.322 52.381 0.00 0.00 0.00 3.67
3898 4128 4.249661 GGTGTCTCTGTCAGAAATTCCTC 58.750 47.826 3.67 0.00 30.72 3.71
4023 4253 1.195674 GAGAGTGAAAAGAAGCGTGCC 59.804 52.381 0.00 0.00 0.00 5.01
4249 4496 6.258947 GTCCTTAGATGCAGTGGAGAAAATAC 59.741 42.308 0.00 0.00 0.00 1.89
4317 4564 9.883142 ACATTTGGAAGTTCTGAAATTGTAAAA 57.117 25.926 7.92 6.19 0.00 1.52
4532 4780 2.819608 CACCTCCCCAACATACTTTGTG 59.180 50.000 0.00 0.00 38.99 3.33
4922 5170 8.721478 TCATAGAATAGTTGCACTTTGTTCTTC 58.279 33.333 8.05 0.00 30.97 2.87
4930 5178 6.482308 AGTTGCACTTTGTTCTTCTACGTTAT 59.518 34.615 0.00 0.00 0.00 1.89
4937 5185 8.529476 ACTTTGTTCTTCTACGTTATGGAGTAT 58.471 33.333 0.00 0.00 0.00 2.12
5013 5261 9.698309 AAGAGATTTCAATATGGACTACATACG 57.302 33.333 0.00 0.00 44.41 3.06
5162 5410 8.742554 ATCTTTTTATTTGTTTTCCTGCGTAG 57.257 30.769 0.00 0.00 0.00 3.51
5213 5461 7.615757 CAGGGTAGAAATTACTCCCAAGATTTT 59.384 37.037 0.00 0.00 40.48 1.82
5313 5561 2.427453 TCTCTGAATAACTCCAGCGGTC 59.573 50.000 0.00 0.00 0.00 4.79
5320 5568 0.620556 AACTCCAGCGGTCCAATCAT 59.379 50.000 0.00 0.00 0.00 2.45
5354 5602 2.288395 GGCACCAACAAAATCCTCACTG 60.288 50.000 0.00 0.00 0.00 3.66
5355 5603 2.288395 GCACCAACAAAATCCTCACTGG 60.288 50.000 0.00 0.00 37.10 4.00
5356 5604 2.958355 CACCAACAAAATCCTCACTGGT 59.042 45.455 0.00 0.00 36.12 4.00
5357 5605 2.958355 ACCAACAAAATCCTCACTGGTG 59.042 45.455 0.00 0.00 34.46 4.17
5358 5606 2.958355 CCAACAAAATCCTCACTGGTGT 59.042 45.455 0.53 0.00 37.07 4.16
5359 5607 3.384467 CCAACAAAATCCTCACTGGTGTT 59.616 43.478 0.53 0.00 33.32 3.32
5360 5608 4.582656 CCAACAAAATCCTCACTGGTGTTA 59.417 41.667 0.53 0.00 31.93 2.41
5361 5609 5.507315 CCAACAAAATCCTCACTGGTGTTAC 60.507 44.000 0.53 0.00 31.93 2.50
5523 5771 6.064717 ACTGAGCCAAGTTCACTTAGAAATT 58.935 36.000 0.00 0.00 44.62 1.82
5757 6006 4.755266 ACCTGCTACCACTACCATAAAG 57.245 45.455 0.00 0.00 0.00 1.85
5798 6047 2.169352 AGGCGTGAATCATCAGCTACTT 59.831 45.455 7.87 0.00 35.88 2.24
5879 6128 4.558470 CACGTATGGCAATAGCAAACAAAG 59.442 41.667 0.00 0.00 44.61 2.77
5939 6188 2.980233 GACCTGGCAGCACCACAC 60.980 66.667 9.56 0.00 46.36 3.82
6102 6351 5.700832 TCAACAAAGTAGTTACTGGATGCTG 59.299 40.000 0.00 0.00 36.50 4.41
6116 6365 3.199727 TGGATGCTGCACTTACCTGATAA 59.800 43.478 3.57 0.00 0.00 1.75
6117 6366 4.141413 TGGATGCTGCACTTACCTGATAAT 60.141 41.667 3.57 0.00 0.00 1.28
6121 6370 4.065789 GCTGCACTTACCTGATAATACCC 58.934 47.826 0.00 0.00 0.00 3.69
6154 6403 4.439016 GGTCAGATCTAGTGAACCTTCGTC 60.439 50.000 0.00 0.00 0.00 4.20
6181 6430 3.956199 CCATGAAGCATAACAGGACCATT 59.044 43.478 0.00 0.00 0.00 3.16
6263 6512 5.801531 AGTTCACAGTTATACACCAGACA 57.198 39.130 0.00 0.00 0.00 3.41
6308 6557 0.041400 CATGCAACAACGAGCGAACA 60.041 50.000 0.00 0.00 0.00 3.18
6312 6561 1.462791 CAACAACGAGCGAACAAACC 58.537 50.000 0.00 0.00 0.00 3.27
6383 6632 3.964031 TGAAGGTTAACATTGCCCTTGTT 59.036 39.130 10.71 2.24 37.43 2.83
6584 6863 1.773635 CCCACAATTCACAGGGGGA 59.226 57.895 0.00 0.00 37.80 4.81
6633 6912 4.645588 TGGTGTAAAGGAAAATCAAACCGT 59.354 37.500 0.00 0.00 0.00 4.83
6725 7009 6.273071 AGAAAAACATGCCAAAGAAGTACAC 58.727 36.000 0.00 0.00 0.00 2.90
6827 7113 2.635427 ACAGAGGAGAAACAAGGGACTC 59.365 50.000 0.00 0.00 38.49 3.36
6828 7114 2.903135 CAGAGGAGAAACAAGGGACTCT 59.097 50.000 0.00 0.00 38.49 3.24
6850 7136 5.247110 TCTGAGCCAGAGGGATATATTTCAC 59.753 44.000 1.25 0.00 35.39 3.18
7020 7306 0.826715 GTCAGTGAGGATGCTGCCTA 59.173 55.000 0.00 0.00 38.73 3.93
7058 7344 4.530857 CGGCGTGGGAGGGATGAC 62.531 72.222 0.00 0.00 0.00 3.06
7148 7434 4.385358 AAAGTAGGCAACCACAACTTTG 57.615 40.909 9.56 0.00 38.57 2.77
7237 7523 5.337578 ACTCTCTGGAATTAGCTGTCTTC 57.662 43.478 0.00 0.00 0.00 2.87
7514 7800 0.387622 CCATTGCTTGTCTTGCGTGG 60.388 55.000 0.00 0.00 34.33 4.94
7515 7801 1.005294 CATTGCTTGTCTTGCGTGGC 61.005 55.000 0.00 0.00 0.00 5.01
7563 7849 4.932146 ACATTGGCTTTCTGTTTGTGTAC 58.068 39.130 0.00 0.00 0.00 2.90
7565 7851 5.105554 ACATTGGCTTTCTGTTTGTGTACAA 60.106 36.000 0.00 0.00 0.00 2.41
7721 8007 2.611224 CCTGCTGGTTTTGATGGCTTTC 60.611 50.000 0.51 0.00 0.00 2.62
7758 8045 8.936864 CAGGTAAAGTGTAAGTAAATCTGGAAG 58.063 37.037 0.00 0.00 0.00 3.46
8156 8443 6.876257 AGTGAGAGGTTGTTTCTGAATGTATC 59.124 38.462 0.00 0.00 0.00 2.24
8168 8455 8.592809 GTTTCTGAATGTATCTCTAGATGGGAT 58.407 37.037 2.66 0.00 36.05 3.85
8263 8550 3.616956 TGTGATGAGCTTACCTTCCAG 57.383 47.619 0.00 0.00 0.00 3.86
8390 8677 0.264359 AGCATCTCTAGCAGACCCCT 59.736 55.000 0.00 0.00 32.26 4.79
8392 8679 1.202627 GCATCTCTAGCAGACCCCTTG 60.203 57.143 0.00 0.00 32.26 3.61
8417 8704 2.538512 GGCGGACCCGTATAATTCTT 57.461 50.000 10.37 0.00 42.09 2.52
8422 8709 3.001939 CGGACCCGTATAATTCTTGCAAC 59.998 47.826 0.00 0.00 34.35 4.17
8551 9993 0.106149 GGGTTTCACCGCTCGGATAT 59.894 55.000 15.95 0.00 39.83 1.63
8556 9998 1.046472 TCACCGCTCGGATATGGGTT 61.046 55.000 15.95 0.00 38.96 4.11
8560 10002 2.370849 ACCGCTCGGATATGGGTTAAAT 59.629 45.455 15.95 0.00 38.96 1.40
8593 10091 3.930012 CGCGATTCCCCTCCTCCC 61.930 72.222 0.00 0.00 0.00 4.30
8594 10092 3.561241 GCGATTCCCCTCCTCCCC 61.561 72.222 0.00 0.00 0.00 4.81
8595 10093 2.287251 CGATTCCCCTCCTCCCCT 59.713 66.667 0.00 0.00 0.00 4.79
8596 10094 1.384643 CGATTCCCCTCCTCCCCTT 60.385 63.158 0.00 0.00 0.00 3.95
8597 10095 0.988678 CGATTCCCCTCCTCCCCTTT 60.989 60.000 0.00 0.00 0.00 3.11
8598 10096 0.553333 GATTCCCCTCCTCCCCTTTG 59.447 60.000 0.00 0.00 0.00 2.77
8599 10097 1.584717 ATTCCCCTCCTCCCCTTTGC 61.585 60.000 0.00 0.00 0.00 3.68
8600 10098 2.941025 CCCCTCCTCCCCTTTGCA 60.941 66.667 0.00 0.00 0.00 4.08
8601 10099 2.319762 CCCCTCCTCCCCTTTGCAT 61.320 63.158 0.00 0.00 0.00 3.96
8602 10100 1.228510 CCCTCCTCCCCTTTGCATC 59.771 63.158 0.00 0.00 0.00 3.91
8603 10101 1.228510 CCTCCTCCCCTTTGCATCC 59.771 63.158 0.00 0.00 0.00 3.51
8604 10102 1.153086 CTCCTCCCCTTTGCATCCG 60.153 63.158 0.00 0.00 0.00 4.18
8605 10103 2.830370 CCTCCCCTTTGCATCCGC 60.830 66.667 0.00 0.00 39.24 5.54
8606 10104 2.830370 CTCCCCTTTGCATCCGCC 60.830 66.667 0.00 0.00 37.32 6.13
8607 10105 4.794648 TCCCCTTTGCATCCGCCG 62.795 66.667 0.00 0.00 37.32 6.46
8611 10109 3.576356 CTTTGCATCCGCCGCGAT 61.576 61.111 15.93 3.01 37.32 4.58
8612 10110 3.112126 CTTTGCATCCGCCGCGATT 62.112 57.895 15.93 0.00 37.32 3.34
8613 10111 2.971744 CTTTGCATCCGCCGCGATTC 62.972 60.000 15.93 1.31 37.32 2.52
8622 10120 2.840102 CCGCGATTCCCCTCCTCT 60.840 66.667 8.23 0.00 0.00 3.69
8634 10132 1.006400 CCCTCCTCTGCCCAATTTCTT 59.994 52.381 0.00 0.00 0.00 2.52
8639 10137 2.154462 CTCTGCCCAATTTCTTGTCGT 58.846 47.619 0.00 0.00 0.00 4.34
8643 10141 1.519408 CCCAATTTCTTGTCGTCGGT 58.481 50.000 0.00 0.00 0.00 4.69
8648 10146 0.387929 TTTCTTGTCGTCGGTGAGCT 59.612 50.000 0.00 0.00 0.00 4.09
8829 10714 1.587054 CACGTCTCCTTCGGCTCTT 59.413 57.895 0.00 0.00 0.00 2.85
8830 10715 0.456995 CACGTCTCCTTCGGCTCTTC 60.457 60.000 0.00 0.00 0.00 2.87
8831 10716 0.609681 ACGTCTCCTTCGGCTCTTCT 60.610 55.000 0.00 0.00 0.00 2.85
9012 10917 2.362503 ATCGTCCTGGAGCGGTCA 60.363 61.111 17.59 1.79 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.775654 CCCCGCTGAGTGTCTCCC 61.776 72.222 0.00 0.00 0.00 4.30
57 58 0.740737 CACTTGGATGATTTCCCCGC 59.259 55.000 0.00 0.00 44.77 6.13
59 60 2.807676 ACACACTTGGATGATTTCCCC 58.192 47.619 0.00 0.00 44.77 4.81
81 82 4.163268 TCCGGATGTTATGTTCTTGATGGA 59.837 41.667 0.00 0.00 0.00 3.41
106 107 4.637276 TCTGAATGTTCAAAAGCGTAGGA 58.363 39.130 0.00 0.00 36.64 2.94
111 112 3.423206 GCACTTCTGAATGTTCAAAAGCG 59.577 43.478 8.36 1.61 38.50 4.68
116 117 3.693578 TGTGTGCACTTCTGAATGTTCAA 59.306 39.130 19.41 0.00 36.64 2.69
163 164 7.771927 ATGAAGATCTTGAGTTGGAATTGTT 57.228 32.000 14.00 0.00 0.00 2.83
178 179 7.275920 AGCGTTTCCTTACATTATGAAGATCT 58.724 34.615 0.00 0.00 0.00 2.75
220 221 5.812127 TGTAATTGGAGTTGTGATCGATCAG 59.188 40.000 27.95 0.00 37.51 2.90
227 228 5.009610 GTGGTGTTGTAATTGGAGTTGTGAT 59.990 40.000 0.00 0.00 0.00 3.06
238 239 3.386402 CCCAAAGTGGTGGTGTTGTAATT 59.614 43.478 0.00 0.00 36.90 1.40
256 257 1.832366 TGTTGCGCTATACCTACCCAA 59.168 47.619 9.73 0.00 0.00 4.12
258 259 2.607631 TTGTTGCGCTATACCTACCC 57.392 50.000 9.73 0.00 0.00 3.69
266 267 0.740737 GCAGGGAATTGTTGCGCTAT 59.259 50.000 9.73 0.00 0.00 2.97
271 272 2.147436 TTTTCGCAGGGAATTGTTGC 57.853 45.000 0.00 0.00 33.85 4.17
274 275 4.280677 TCTGAATTTTTCGCAGGGAATTGT 59.719 37.500 0.00 0.00 33.85 2.71
284 285 4.209452 TGTGTGAGTCTGAATTTTTCGC 57.791 40.909 0.00 0.00 0.00 4.70
285 286 5.568482 TGTTGTGTGAGTCTGAATTTTTCG 58.432 37.500 0.00 0.00 0.00 3.46
294 295 4.437390 GGTTCAGTTTGTTGTGTGAGTCTG 60.437 45.833 0.00 0.00 0.00 3.51
307 308 6.429078 TGATTCTCTTGATCAGGTTCAGTTTG 59.571 38.462 4.57 0.00 0.00 2.93
322 323 4.573900 AGTTGTACTGCCTGATTCTCTTG 58.426 43.478 0.00 0.00 0.00 3.02
328 329 5.700402 AGGATAAGTTGTACTGCCTGATT 57.300 39.130 0.00 0.00 0.00 2.57
334 335 5.517904 CCGTAGTAGGATAAGTTGTACTGC 58.482 45.833 0.00 0.00 0.00 4.40
336 337 4.274459 CGCCGTAGTAGGATAAGTTGTACT 59.726 45.833 0.00 0.00 0.00 2.73
342 343 0.957362 GGCGCCGTAGTAGGATAAGT 59.043 55.000 12.58 0.00 0.00 2.24
343 344 0.956633 TGGCGCCGTAGTAGGATAAG 59.043 55.000 23.90 0.00 0.00 1.73
350 351 2.202824 GCATGTGGCGCCGTAGTA 60.203 61.111 23.90 6.13 0.00 1.82
372 373 3.179443 TCTCCACTACGAATTGATGGC 57.821 47.619 0.00 0.00 0.00 4.40
376 377 6.039493 GGTTCTCTATCTCCACTACGAATTGA 59.961 42.308 0.00 0.00 0.00 2.57
380 381 4.851843 TGGTTCTCTATCTCCACTACGAA 58.148 43.478 0.00 0.00 0.00 3.85
381 382 4.498894 TGGTTCTCTATCTCCACTACGA 57.501 45.455 0.00 0.00 0.00 3.43
383 384 4.639310 TCGTTGGTTCTCTATCTCCACTAC 59.361 45.833 0.00 0.00 0.00 2.73
403 404 0.387367 GATGCACTGAGTGTCGTCGT 60.387 55.000 14.82 0.00 35.75 4.34
405 406 0.109735 TCGATGCACTGAGTGTCGTC 60.110 55.000 20.23 17.44 34.93 4.20
417 418 2.885113 CTGTCCGAGGTCGATGCA 59.115 61.111 0.00 0.00 43.02 3.96
508 509 3.714487 TTATGCAAGGGAGGCGGCC 62.714 63.158 12.11 12.11 0.00 6.13
510 511 0.107214 TTCTTATGCAAGGGAGGCGG 60.107 55.000 0.00 0.00 32.22 6.13
523 524 7.112984 GCAGTTTTTGACGAATCGTTTTCTTAT 59.887 33.333 10.45 0.00 41.37 1.73
567 568 8.715190 AGTAGCCCCTAAAAATCTGTTAAAAA 57.285 30.769 0.00 0.00 0.00 1.94
568 569 8.715190 AAGTAGCCCCTAAAAATCTGTTAAAA 57.285 30.769 0.00 0.00 0.00 1.52
569 570 8.715190 AAAGTAGCCCCTAAAAATCTGTTAAA 57.285 30.769 0.00 0.00 0.00 1.52
570 571 9.234827 GTAAAGTAGCCCCTAAAAATCTGTTAA 57.765 33.333 0.00 0.00 0.00 2.01
571 572 8.384718 TGTAAAGTAGCCCCTAAAAATCTGTTA 58.615 33.333 0.00 0.00 0.00 2.41
572 573 7.235804 TGTAAAGTAGCCCCTAAAAATCTGTT 58.764 34.615 0.00 0.00 0.00 3.16
573 574 6.786122 TGTAAAGTAGCCCCTAAAAATCTGT 58.214 36.000 0.00 0.00 0.00 3.41
574 575 7.881775 ATGTAAAGTAGCCCCTAAAAATCTG 57.118 36.000 0.00 0.00 0.00 2.90
575 576 9.404848 GTAATGTAAAGTAGCCCCTAAAAATCT 57.595 33.333 0.00 0.00 0.00 2.40
576 577 9.404848 AGTAATGTAAAGTAGCCCCTAAAAATC 57.595 33.333 0.00 0.00 0.00 2.17
577 578 9.404848 GAGTAATGTAAAGTAGCCCCTAAAAAT 57.595 33.333 0.00 0.00 0.00 1.82
578 579 7.830697 GGAGTAATGTAAAGTAGCCCCTAAAAA 59.169 37.037 0.00 0.00 0.00 1.94
579 580 7.341030 GGAGTAATGTAAAGTAGCCCCTAAAA 58.659 38.462 0.00 0.00 0.00 1.52
580 581 6.126681 GGGAGTAATGTAAAGTAGCCCCTAAA 60.127 42.308 0.00 0.00 0.00 1.85
581 582 5.367644 GGGAGTAATGTAAAGTAGCCCCTAA 59.632 44.000 0.00 0.00 0.00 2.69
582 583 4.903649 GGGAGTAATGTAAAGTAGCCCCTA 59.096 45.833 0.00 0.00 0.00 3.53
583 584 3.715315 GGGAGTAATGTAAAGTAGCCCCT 59.285 47.826 0.00 0.00 0.00 4.79
584 585 3.715315 AGGGAGTAATGTAAAGTAGCCCC 59.285 47.826 0.00 0.00 33.51 5.80
585 586 4.202336 GGAGGGAGTAATGTAAAGTAGCCC 60.202 50.000 0.00 0.00 0.00 5.19
586 587 4.654724 AGGAGGGAGTAATGTAAAGTAGCC 59.345 45.833 0.00 0.00 0.00 3.93
587 588 5.873146 AGGAGGGAGTAATGTAAAGTAGC 57.127 43.478 0.00 0.00 0.00 3.58
588 589 6.383147 TGGAAGGAGGGAGTAATGTAAAGTAG 59.617 42.308 0.00 0.00 0.00 2.57
589 590 6.266080 TGGAAGGAGGGAGTAATGTAAAGTA 58.734 40.000 0.00 0.00 0.00 2.24
590 591 5.098663 TGGAAGGAGGGAGTAATGTAAAGT 58.901 41.667 0.00 0.00 0.00 2.66
591 592 5.693769 TGGAAGGAGGGAGTAATGTAAAG 57.306 43.478 0.00 0.00 0.00 1.85
592 593 6.457159 TTTGGAAGGAGGGAGTAATGTAAA 57.543 37.500 0.00 0.00 0.00 2.01
593 594 6.457159 TTTTGGAAGGAGGGAGTAATGTAA 57.543 37.500 0.00 0.00 0.00 2.41
594 595 6.457159 TTTTTGGAAGGAGGGAGTAATGTA 57.543 37.500 0.00 0.00 0.00 2.29
595 596 5.333566 TTTTTGGAAGGAGGGAGTAATGT 57.666 39.130 0.00 0.00 0.00 2.71
678 679 9.938280 TTCGAAAAGGTTTATCTCTCAAATAGA 57.062 29.630 0.00 0.00 0.00 1.98
679 680 9.974750 GTTCGAAAAGGTTTATCTCTCAAATAG 57.025 33.333 0.00 0.00 0.00 1.73
680 681 8.653338 CGTTCGAAAAGGTTTATCTCTCAAATA 58.347 33.333 0.00 0.00 0.00 1.40
681 682 7.386848 TCGTTCGAAAAGGTTTATCTCTCAAAT 59.613 33.333 0.00 0.00 0.00 2.32
682 683 6.702723 TCGTTCGAAAAGGTTTATCTCTCAAA 59.297 34.615 0.00 0.00 0.00 2.69
683 684 6.218019 TCGTTCGAAAAGGTTTATCTCTCAA 58.782 36.000 0.00 0.00 0.00 3.02
684 685 5.775686 TCGTTCGAAAAGGTTTATCTCTCA 58.224 37.500 0.00 0.00 0.00 3.27
685 686 6.183360 CCTTCGTTCGAAAAGGTTTATCTCTC 60.183 42.308 17.16 0.00 37.78 3.20
686 687 5.638234 CCTTCGTTCGAAAAGGTTTATCTCT 59.362 40.000 17.16 0.00 37.78 3.10
687 688 5.163884 CCCTTCGTTCGAAAAGGTTTATCTC 60.164 44.000 21.59 0.00 40.43 2.75
688 689 4.694037 CCCTTCGTTCGAAAAGGTTTATCT 59.306 41.667 21.59 0.00 40.43 1.98
689 690 4.692155 TCCCTTCGTTCGAAAAGGTTTATC 59.308 41.667 21.59 0.00 40.43 1.75
690 691 4.644498 TCCCTTCGTTCGAAAAGGTTTAT 58.356 39.130 21.59 0.00 40.43 1.40
691 692 4.060205 CTCCCTTCGTTCGAAAAGGTTTA 58.940 43.478 21.59 10.06 40.43 2.01
692 693 2.876550 CTCCCTTCGTTCGAAAAGGTTT 59.123 45.455 21.59 0.00 40.43 3.27
693 694 2.158856 ACTCCCTTCGTTCGAAAAGGTT 60.159 45.455 21.59 7.87 40.43 3.50
694 695 1.415289 ACTCCCTTCGTTCGAAAAGGT 59.585 47.619 21.59 6.25 40.43 3.50
695 696 2.165319 ACTCCCTTCGTTCGAAAAGG 57.835 50.000 18.10 18.10 41.48 3.11
696 697 2.991866 GGTACTCCCTTCGTTCGAAAAG 59.008 50.000 0.00 0.39 0.00 2.27
697 698 2.629617 AGGTACTCCCTTCGTTCGAAAA 59.370 45.455 0.00 0.00 42.73 2.29
698 699 2.242043 AGGTACTCCCTTCGTTCGAAA 58.758 47.619 0.00 0.00 42.73 3.46
699 700 1.915141 AGGTACTCCCTTCGTTCGAA 58.085 50.000 7.40 7.40 42.73 3.71
700 701 2.787473 TAGGTACTCCCTTCGTTCGA 57.213 50.000 0.00 0.00 42.73 3.71
701 702 3.379372 TCAATAGGTACTCCCTTCGTTCG 59.621 47.826 0.00 0.00 42.73 3.95
702 703 4.996788 TCAATAGGTACTCCCTTCGTTC 57.003 45.455 0.00 0.00 42.73 3.95
703 704 5.021458 TCTTCAATAGGTACTCCCTTCGTT 58.979 41.667 0.00 0.00 42.73 3.85
704 705 4.607239 TCTTCAATAGGTACTCCCTTCGT 58.393 43.478 0.00 0.00 42.73 3.85
705 706 5.069251 ACATCTTCAATAGGTACTCCCTTCG 59.931 44.000 0.00 0.00 42.73 3.79
706 707 6.487299 ACATCTTCAATAGGTACTCCCTTC 57.513 41.667 0.00 0.00 42.73 3.46
707 708 6.443849 TGAACATCTTCAATAGGTACTCCCTT 59.556 38.462 0.00 0.00 37.86 3.95
708 709 5.964477 TGAACATCTTCAATAGGTACTCCCT 59.036 40.000 0.00 0.00 39.25 4.20
709 710 6.049790 GTGAACATCTTCAATAGGTACTCCC 58.950 44.000 0.00 0.00 37.83 4.30
710 711 6.049790 GGTGAACATCTTCAATAGGTACTCC 58.950 44.000 0.00 0.00 37.83 3.85
711 712 5.749109 CGGTGAACATCTTCAATAGGTACTC 59.251 44.000 0.00 0.00 37.83 2.59
712 713 5.395324 CCGGTGAACATCTTCAATAGGTACT 60.395 44.000 0.00 0.00 39.49 2.73
713 714 4.809426 CCGGTGAACATCTTCAATAGGTAC 59.191 45.833 0.00 0.00 38.17 3.34
747 748 2.159462 GCTTCTGCGGATTTTCTGGAAG 60.159 50.000 0.00 0.00 33.93 3.46
772 782 0.179171 GATCGACTTCGGCGTCAAGA 60.179 55.000 14.33 6.36 40.29 3.02
790 800 1.964373 GCCCGCTCAACCTTTTCGA 60.964 57.895 0.00 0.00 0.00 3.71
842 852 1.218316 GCTCGGAAATGACGGGACT 59.782 57.895 0.00 0.00 32.46 3.85
872 882 3.353836 CCGGTCACAGGCCAAACG 61.354 66.667 5.01 1.08 0.00 3.60
885 895 3.534056 CTATTCGGGTCGGCCGGT 61.534 66.667 27.83 5.45 36.58 5.28
1207 1217 1.608055 TCGTGACCAAGACGGAACTA 58.392 50.000 0.00 0.00 38.63 2.24
1208 1218 0.966920 ATCGTGACCAAGACGGAACT 59.033 50.000 0.00 0.00 38.63 3.01
1209 1219 1.068474 CATCGTGACCAAGACGGAAC 58.932 55.000 0.00 0.00 38.63 3.62
1210 1220 0.669318 GCATCGTGACCAAGACGGAA 60.669 55.000 0.00 0.00 38.63 4.30
1211 1221 1.080093 GCATCGTGACCAAGACGGA 60.080 57.895 0.00 0.00 38.63 4.69
1212 1222 3.474806 GCATCGTGACCAAGACGG 58.525 61.111 0.00 0.00 42.50 4.79
1871 1881 5.048507 GGAACATAGTAAGACCGAACATCC 58.951 45.833 0.00 0.00 0.00 3.51
1872 1882 4.738740 CGGAACATAGTAAGACCGAACATC 59.261 45.833 0.00 0.00 42.40 3.06
1873 1883 4.159135 ACGGAACATAGTAAGACCGAACAT 59.841 41.667 17.08 0.00 42.40 2.71
1874 1884 3.507233 ACGGAACATAGTAAGACCGAACA 59.493 43.478 17.08 0.00 42.40 3.18
1875 1885 4.102035 ACGGAACATAGTAAGACCGAAC 57.898 45.455 17.08 0.00 42.40 3.95
1876 1886 4.789012 AACGGAACATAGTAAGACCGAA 57.211 40.909 17.08 0.00 42.40 4.30
1877 1887 4.487948 CAAACGGAACATAGTAAGACCGA 58.512 43.478 17.08 0.00 42.40 4.69
1878 1888 3.061697 GCAAACGGAACATAGTAAGACCG 59.938 47.826 0.00 0.00 44.77 4.79
1879 1889 4.251268 AGCAAACGGAACATAGTAAGACC 58.749 43.478 0.00 0.00 0.00 3.85
1880 1890 6.327934 TCTAGCAAACGGAACATAGTAAGAC 58.672 40.000 0.00 0.00 0.00 3.01
1881 1891 6.519679 TCTAGCAAACGGAACATAGTAAGA 57.480 37.500 0.00 0.00 0.00 2.10
1940 1950 2.696759 AAAAGCATACCGCACGGGC 61.697 57.895 14.51 0.00 46.13 6.13
1945 1955 0.538516 ACCACCAAAAGCATACCGCA 60.539 50.000 0.00 0.00 46.13 5.69
1986 1996 6.303054 TGGGTAGAATCACAATCAAGAAACA 58.697 36.000 0.00 0.00 0.00 2.83
1993 2003 6.009589 ACATTGTTGGGTAGAATCACAATCA 58.990 36.000 0.00 0.00 33.19 2.57
2120 2131 6.015180 ACTGAAAAGCCAGCTCAATAAAATCA 60.015 34.615 0.00 0.00 37.68 2.57
2516 2527 8.753133 ACTCAAAATATTTCCATTCCTTTCTCC 58.247 33.333 0.10 0.00 0.00 3.71
2533 2544 6.262273 GTGTTCCCTCACAAGAACTCAAAATA 59.738 38.462 4.70 0.00 42.32 1.40
2729 2744 5.296151 CAGGGTACTGGATGTCACATAAT 57.704 43.478 0.00 0.00 41.13 1.28
2901 2916 2.099756 GGCAGTCTGGCACCAATTAATC 59.900 50.000 20.87 0.00 43.14 1.75
2912 2927 0.807667 CGATACACTGGCAGTCTGGC 60.808 60.000 19.13 19.16 44.03 4.85
2913 2928 0.807667 GCGATACACTGGCAGTCTGG 60.808 60.000 19.13 9.68 0.00 3.86
2914 2929 0.174389 AGCGATACACTGGCAGTCTG 59.826 55.000 19.13 10.55 0.00 3.51
2915 2930 0.457851 GAGCGATACACTGGCAGTCT 59.542 55.000 19.13 10.75 0.00 3.24
2916 2931 0.173481 TGAGCGATACACTGGCAGTC 59.827 55.000 19.13 5.51 0.00 3.51
2917 2932 0.608130 TTGAGCGATACACTGGCAGT 59.392 50.000 15.88 15.88 0.00 4.40
2918 2933 1.662629 CTTTGAGCGATACACTGGCAG 59.337 52.381 14.16 14.16 0.00 4.85
3021 3036 6.184068 TGCTCATTAAGGTTGGCATTTACTA 58.816 36.000 0.00 0.00 0.00 1.82
3145 3167 0.033306 GAAGGTACTCCCTCCGTCCT 60.033 60.000 0.00 0.00 45.47 3.85
3218 3240 0.183492 AGCAGAGCAGTCCCAAACAA 59.817 50.000 0.00 0.00 0.00 2.83
3245 3267 1.673767 TTTCTGGAGGGGAGCTGAAT 58.326 50.000 0.00 0.00 0.00 2.57
3255 3277 5.334879 CCGTTTGACTTGTATTTTCTGGAGG 60.335 44.000 0.00 0.00 0.00 4.30
3266 3288 1.972795 AGCTACCCCGTTTGACTTGTA 59.027 47.619 0.00 0.00 0.00 2.41
3290 3312 0.657312 TTTTGCAGAGCGGCATATCG 59.343 50.000 1.45 0.00 44.48 2.92
3312 3334 3.707102 GAGCTGTACCCCAGATTCTAGTT 59.293 47.826 0.00 0.00 40.67 2.24
3343 3365 3.371595 GCACCCCCTAAAGAGCTTCATAA 60.372 47.826 0.00 0.00 0.00 1.90
3346 3368 0.328258 GCACCCCCTAAAGAGCTTCA 59.672 55.000 0.00 0.00 0.00 3.02
3451 3679 6.603201 GTGGAAAGGATCTATTTGATTGGACA 59.397 38.462 0.00 0.00 35.14 4.02
3670 3898 8.858094 TGTGCATAATGGCTCAAATATATTTCA 58.142 29.630 7.76 4.04 34.67 2.69
3881 4111 4.550076 ACTGGAGGAATTTCTGACAGAG 57.450 45.455 17.74 0.00 0.00 3.35
4023 4253 6.461788 GGCTAAGTTCCTCCAGTGTAAGATAG 60.462 46.154 0.00 0.00 0.00 2.08
4152 4387 1.807742 CACATTTGGCAAAGGCATTGG 59.192 47.619 23.06 5.65 43.71 3.16
4249 4496 4.295141 TCATAACTTGGTTACCACAGGG 57.705 45.455 2.39 0.00 41.29 4.45
4317 4564 5.048846 TCCTCCTAACAAGCTGTTTTCTT 57.951 39.130 6.82 0.00 41.45 2.52
4604 4852 3.368013 GCATAACAGGGTTAAAGGGCAAC 60.368 47.826 0.00 0.00 0.00 4.17
4922 5170 5.050490 AGCTTGCAATACTCCATAACGTAG 58.950 41.667 0.00 0.00 0.00 3.51
4930 5178 2.571653 ACAGGTAGCTTGCAATACTCCA 59.428 45.455 0.00 0.00 0.00 3.86
4937 5185 5.395324 GGAGTAGATTACAGGTAGCTTGCAA 60.395 44.000 0.00 0.00 0.00 4.08
4987 5235 9.698309 CGTATGTAGTCCATATTGAAATCTCTT 57.302 33.333 0.00 0.00 38.29 2.85
5106 5354 5.104151 TGAAATTATGCACATACTCCCTCCA 60.104 40.000 0.00 0.00 0.00 3.86
5162 5410 8.345565 TGACAGAAAAGAAAGAGAATAGCAAAC 58.654 33.333 0.00 0.00 0.00 2.93
5313 5561 0.804544 CCAGCGCTTGCAATGATTGG 60.805 55.000 7.50 0.00 42.66 3.16
5657 5906 6.577427 CGCAACTTTATGTTCAAACTTCTACC 59.423 38.462 0.00 0.00 36.63 3.18
5757 6006 3.691609 CCTTCTCCACAGTTCTATTTGCC 59.308 47.826 0.00 0.00 0.00 4.52
5798 6047 1.195442 TCACGGCCATGACCTAACCA 61.195 55.000 0.00 0.00 0.00 3.67
5879 6128 6.759497 AGTCTTTTGGTTATGTAATCCTGC 57.241 37.500 0.00 0.00 0.00 4.85
5939 6188 5.066764 TGCCATGTATTGAATCAGTGATGTG 59.933 40.000 6.34 0.00 0.00 3.21
6102 6351 5.070580 AGACTGGGTATTATCAGGTAAGTGC 59.929 44.000 0.00 0.00 35.47 4.40
6116 6365 2.585900 TCTGACCTGGTAGACTGGGTAT 59.414 50.000 0.00 0.00 42.13 2.73
6117 6366 1.997791 TCTGACCTGGTAGACTGGGTA 59.002 52.381 0.00 0.00 42.13 3.69
6121 6370 4.578516 CACTAGATCTGACCTGGTAGACTG 59.421 50.000 5.18 0.00 0.00 3.51
6154 6403 3.763360 TCCTGTTATGCTTCATGGTTTGG 59.237 43.478 0.00 0.00 0.00 3.28
6181 6430 3.415457 TGACATGGCATACTTGTGTCA 57.585 42.857 13.68 13.68 44.74 3.58
6308 6557 2.282462 CTCTTGGGCTGCCGGTTT 60.282 61.111 13.40 0.00 0.00 3.27
6312 6561 3.741476 GTTGCTCTTGGGCTGCCG 61.741 66.667 13.40 0.00 0.00 5.69
6383 6632 4.959210 CCAGGGAAGATAGAAGAGTCTCAA 59.041 45.833 1.94 0.00 35.12 3.02
6604 6883 1.868469 TTTCCTTTACACCACGACCG 58.132 50.000 0.00 0.00 0.00 4.79
6633 6912 4.079253 GTTTGGCTGGTTCTCTTATTCCA 58.921 43.478 0.00 0.00 0.00 3.53
6725 7009 4.067896 CCTCAGATATGGGACGAAAATGG 58.932 47.826 0.00 0.00 0.00 3.16
6827 7113 5.486526 GTGAAATATATCCCTCTGGCTCAG 58.513 45.833 0.00 0.00 0.00 3.35
6828 7114 4.287067 GGTGAAATATATCCCTCTGGCTCA 59.713 45.833 0.00 0.00 0.00 4.26
6839 7125 7.164122 TCTCTGGAATGCAGGTGAAATATATC 58.836 38.462 1.05 0.00 0.00 1.63
6850 7136 4.267536 TGATCTTTTCTCTGGAATGCAGG 58.732 43.478 1.05 0.00 0.00 4.85
7058 7344 1.004560 TTCTCCTCTTGTGCTGCCG 60.005 57.895 0.00 0.00 0.00 5.69
7099 7385 4.934356 TGCCTGAAATTAGTGGGAATCTT 58.066 39.130 0.00 0.00 0.00 2.40
7106 7392 5.643379 TTTTAGCTGCCTGAAATTAGTGG 57.357 39.130 0.00 0.00 0.00 4.00
7181 7467 3.301835 GCATCACTGTACTTCGTATTGCG 60.302 47.826 0.00 0.00 43.01 4.85
7563 7849 5.009854 AGTCACCCAACTGAAATGTTTTG 57.990 39.130 0.00 0.00 0.00 2.44
7565 7851 6.783708 TTTAGTCACCCAACTGAAATGTTT 57.216 33.333 0.00 0.00 0.00 2.83
7721 8007 9.052759 ACTTACACTTTACCTGTAAACAATGAG 57.947 33.333 0.00 0.00 34.46 2.90
7758 8045 1.153005 CCCCTGGCAGAAGCTGATC 60.153 63.158 17.94 0.00 41.70 2.92
7842 8129 4.698304 TCGGCTCCAAAATAAACCTACAAG 59.302 41.667 0.00 0.00 0.00 3.16
8156 8443 4.743057 TGTTGACACATCCCATCTAGAG 57.257 45.455 0.00 0.00 0.00 2.43
8168 8455 5.119898 GCAAAACACAAATCTTGTTGACACA 59.880 36.000 0.00 0.00 43.23 3.72
8204 8491 2.924421 CTCATAACAGAAGGGGCTTCC 58.076 52.381 0.00 0.00 40.98 3.46
8286 8573 2.583024 TCAGGCATGGATTGTTCACA 57.417 45.000 0.00 0.00 0.00 3.58
8416 8703 3.075884 GGTCAAACCCGTATAGTTGCAA 58.924 45.455 0.00 0.00 30.04 4.08
8417 8704 2.702261 GGTCAAACCCGTATAGTTGCA 58.298 47.619 0.00 0.00 30.04 4.08
8551 9993 3.394606 GGAGGCAGATAGGATTTAACCCA 59.605 47.826 0.00 0.00 0.00 4.51
8556 9998 3.055819 GCGATGGAGGCAGATAGGATTTA 60.056 47.826 0.00 0.00 0.00 1.40
8560 10002 1.527433 CGCGATGGAGGCAGATAGGA 61.527 60.000 0.00 0.00 0.00 2.94
8594 10092 2.971744 GAATCGCGGCGGATGCAAAG 62.972 60.000 23.46 0.00 45.35 2.77
8595 10093 3.107104 GAATCGCGGCGGATGCAAA 62.107 57.895 23.46 0.62 45.35 3.68
8596 10094 3.572539 GAATCGCGGCGGATGCAA 61.573 61.111 23.46 1.46 45.35 4.08
8604 10102 4.610714 GAGGAGGGGAATCGCGGC 62.611 72.222 6.13 0.00 0.00 6.53
8605 10103 2.840102 AGAGGAGGGGAATCGCGG 60.840 66.667 6.13 0.00 0.00 6.46
8606 10104 2.419198 CAGAGGAGGGGAATCGCG 59.581 66.667 0.00 0.00 0.00 5.87
8607 10105 2.110006 GCAGAGGAGGGGAATCGC 59.890 66.667 0.00 0.00 0.00 4.58
8608 10106 2.812619 GGGCAGAGGAGGGGAATCG 61.813 68.421 0.00 0.00 0.00 3.34
8609 10107 1.281925 TTGGGCAGAGGAGGGGAATC 61.282 60.000 0.00 0.00 0.00 2.52
8610 10108 0.628668 ATTGGGCAGAGGAGGGGAAT 60.629 55.000 0.00 0.00 0.00 3.01
8611 10109 0.850883 AATTGGGCAGAGGAGGGGAA 60.851 55.000 0.00 0.00 0.00 3.97
8612 10110 0.850883 AAATTGGGCAGAGGAGGGGA 60.851 55.000 0.00 0.00 0.00 4.81
8613 10111 0.396278 GAAATTGGGCAGAGGAGGGG 60.396 60.000 0.00 0.00 0.00 4.79
8614 10112 0.627986 AGAAATTGGGCAGAGGAGGG 59.372 55.000 0.00 0.00 0.00 4.30
8615 10113 2.097825 CAAGAAATTGGGCAGAGGAGG 58.902 52.381 0.00 0.00 0.00 4.30
8616 10114 2.751806 GACAAGAAATTGGGCAGAGGAG 59.248 50.000 0.00 0.00 0.00 3.69
8617 10115 2.795329 GACAAGAAATTGGGCAGAGGA 58.205 47.619 0.00 0.00 0.00 3.71
8618 10116 1.470098 CGACAAGAAATTGGGCAGAGG 59.530 52.381 0.00 0.00 0.00 3.69
8622 10120 0.871722 CGACGACAAGAAATTGGGCA 59.128 50.000 0.00 0.00 0.00 5.36
8634 10132 0.103390 TTTCAAGCTCACCGACGACA 59.897 50.000 0.00 0.00 0.00 4.35
8700 10563 0.597568 CTTCAGATTTGGCACGGCAA 59.402 50.000 1.33 1.33 0.00 4.52
8701 10564 1.865788 GCTTCAGATTTGGCACGGCA 61.866 55.000 0.00 0.00 0.00 5.69
8706 10569 0.677731 CTCCGGCTTCAGATTTGGCA 60.678 55.000 0.00 0.00 0.00 4.92
8711 10574 1.604378 CCACCTCCGGCTTCAGATT 59.396 57.895 0.00 0.00 0.00 2.40
8758 10640 3.185082 AACTCGCGTCGGTCGAACA 62.185 57.895 5.77 0.00 42.86 3.18
8768 10650 1.660575 CAACTCGACCAACTCGCGT 60.661 57.895 5.77 0.00 42.14 6.01
8775 10657 1.529152 TAGCGCTCCAACTCGACCAA 61.529 55.000 16.34 0.00 0.00 3.67
8806 10688 4.052229 CGAAGGAGACGTGGCGGT 62.052 66.667 0.00 0.00 0.00 5.68
8829 10714 3.443925 CGAGCTCCTCACGGCAGA 61.444 66.667 8.47 0.00 0.00 4.26
8830 10715 3.691744 GACGAGCTCCTCACGGCAG 62.692 68.421 8.47 0.00 36.76 4.85
8831 10716 3.749064 GACGAGCTCCTCACGGCA 61.749 66.667 8.47 0.00 36.76 5.69
9012 10917 1.040339 CCTACTTCAGCTCCCTCGCT 61.040 60.000 0.00 0.00 41.90 4.93
9025 10930 1.377333 GGCGCTCTTTGGCCTACTT 60.377 57.895 7.64 0.00 45.93 2.24
9046 10951 4.175489 GTACTCGAGCTCGCGGCA 62.175 66.667 30.97 14.48 44.79 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.