AutoCloner

Multiple sequence alignment - TraesCS2A01G247600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G247600	chr2A	100.000	2294	0	0	1	2294	367581134	367578841	0.000000e+00	4237.0
1	TraesCS2A01G247600	chr2A	89.189	481	51	1	1376	1855	96070769	96070289	1.170000e-167	599.0
2	TraesCS2A01G247600	chr2D	97.533	1297	22	2	2	1290	291855627	291854333	0.000000e+00	2209.0
3	TraesCS2A01G247600	chr2D	92.329	365	24	4	1930	2294	291854326	291853966	1.220000e-142	516.0
4	TraesCS2A01G247600	chr2D	94.872	39	1	1	1905	1943	3217101	3217064	2.460000e-05	60.2
5	TraesCS2A01G247600	chr2B	96.534	952	27	3	1	949	368305212	368304264	0.000000e+00	1570.0
6	TraesCS2A01G247600	chr2B	90.566	318	14	10	980	1290	368304007	368303699	7.630000e-110	407.0
7	TraesCS2A01G247600	chr2B	84.665	313	35	5	1992	2294	368261042	368260733	1.330000e-77	300.0
8	TraesCS2A01G247600	chr1B	88.310	633	61	11	1290	1913	453883099	453883727	0.000000e+00	747.0
9	TraesCS2A01G247600	chr1B	92.683	41	1	2	1905	1944	455213622	455213661	8.850000e-05	58.4
10	TraesCS2A01G247600	chr7D	94.388	392	21	1	1345	1735	546778682	546779073	3.260000e-168	601.0
11	TraesCS2A01G247600	chr7D	93.467	398	24	2	1339	1735	554675606	554676002	7.060000e-165	590.0
12	TraesCS2A01G247600	chr7A	93.970	398	23	1	1345	1741	216034858	216035255	3.260000e-168	601.0
13	TraesCS2A01G247600	chr7A	87.245	196	24	1	1718	1913	659640356	659640550	2.970000e-54	222.0
14	TraesCS2A01G247600	chr7A	93.333	60	0	2	1292	1347	712155519	712155460	4.060000e-13	86.1
15	TraesCS2A01G247600	chr7A	88.406	69	3	3	1284	1348	465441979	465442046	6.790000e-11	78.7
16	TraesCS2A01G247600	chr5D	94.819	386	18	2	1349	1733	7603747	7604131	3.260000e-168	601.0
17	TraesCS2A01G247600	chr5D	93.233	399	24	3	1341	1737	109044254	109044651	3.280000e-163	584.0
18	TraesCS2A01G247600	chr5D	90.441	136	11	2	993	1127	491102649	491102783	6.510000e-41	178.0
19	TraesCS2A01G247600	chr1A	93.734	399	22	3	1349	1744	560264768	560264370	1.520000e-166	595.0
20	TraesCS2A01G247600	chr1A	93.878	392	23	1	1343	1733	58172998	58173389	7.060000e-165	590.0
21	TraesCS2A01G247600	chr1A	89.560	182	18	1	1732	1913	546321160	546321340	1.770000e-56	230.0
22	TraesCS2A01G247600	chr5A	86.695	233	30	1	1681	1913	670102694	670102925	8.130000e-65	257.0
23	TraesCS2A01G247600	chr5A	87.940	199	23	1	1732	1930	111015565	111015762	1.370000e-57	233.0
24	TraesCS2A01G247600	chr5A	88.971	136	13	2	993	1127	613547184	613547318	1.410000e-37	167.0
25	TraesCS2A01G247600	chr5A	90.000	70	1	4	1282	1347	51462302	51462235	4.060000e-13	86.1
26	TraesCS2A01G247600	chr4A	88.119	202	20	2	1732	1930	601283092	601283292	1.060000e-58	237.0
27	TraesCS2A01G247600	chr4A	88.172	186	21	1	1731	1916	564645308	564645124	1.070000e-53	220.0
28	TraesCS2A01G247600	chr6D	87.374	198	24	1	1732	1929	353082324	353082520	2.290000e-55	226.0
29	TraesCS2A01G247600	chr6D	91.935	62	1	2	1290	1347	312130538	312130477	1.460000e-12	84.2
30	TraesCS2A01G247600	chr4D	86.070	201	27	1	1732	1932	329303950	329304149	4.960000e-52	215.0
31	TraesCS2A01G247600	chr5B	89.630	135	14	0	993	1127	605829466	605829600	3.030000e-39	172.0
32	TraesCS2A01G247600	chr3D	78.404	213	28	4	1737	1937	364739045	364739251	3.090000e-24	122.0
33	TraesCS2A01G247600	chr3D	76.682	223	26	12	1738	1936	94028062	94028282	1.450000e-17	100.0
34	TraesCS2A01G247600	chr3D	90.769	65	1	3	1287	1347	355714261	355714324	5.250000e-12	82.4
35	TraesCS2A01G247600	chr1D	90.411	73	3	3	1294	1362	416482136	416482208	2.430000e-15	93.5
36	TraesCS2A01G247600	chr3A	90.909	66	1	3	1286	1347	643458557	643458621	1.460000e-12	84.2
37	TraesCS2A01G247600	chr3A	83.529	85	7	6	1289	1368	625556611	625556693	3.160000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G247600	chr2A	367578841	367581134	2293	True	4237.0	4237	100.000	1	2294	1	chr2A.!!$R2	2293
1	TraesCS2A01G247600	chr2D	291853966	291855627	1661	True	1362.5	2209	94.931	2	2294	2	chr2D.!!$R2	2292
2	TraesCS2A01G247600	chr2B	368303699	368305212	1513	True	988.5	1570	93.550	1	1290	2	chr2B.!!$R2	1289
3	TraesCS2A01G247600	chr1B	453883099	453883727	628	False	747.0	747	88.310	1290	1913	1	chr1B.!!$F1	623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
309	310	0.254178	AATCAGCTCTGGCGTTCCAT	59.746	50.0	0.00	0.0	42.51	3.41	F
575	578	0.433115	GGAATTTTCCGCGCAAAACG	59.567	50.0	10.63	0.0	40.58	3.60	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1194	1427	0.391927	TCCGGACGCAATAAACCTGG	60.392	55.0	0.0	0.0	0.0	4.45	R
2241	2491	0.539051	CCCTCTCTTTGGCGTCTGAT	59.461	55.0	0.0	0.0	0.0	2.90	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
251	252	4.245660	GCCAAAGGAATTTCCAAAGCTAC	58.754	43.478	17.57	0.00	39.61	3.58
309	310	0.254178	AATCAGCTCTGGCGTTCCAT	59.746	50.000	0.00	0.00	42.51	3.41
513	516	2.880890	CCTTCTGCTGCTTGTAAACAGT	59.119	45.455	0.00	0.00	36.26	3.55
565	568	4.093261	CCAAATCATGCAACGGAATTTTCC	59.907	41.667	0.00	0.00	44.05	3.13
575	578	0.433115	GGAATTTTCCGCGCAAAACG	59.567	50.000	10.63	0.00	40.58	3.60
608	612	5.951747	ACTAATGGATGCAAACAGGTACAAT	59.048	36.000	0.00	0.00	0.00	2.71
877	881	5.489792	AATAACTGAAACTGAGGAGCTCA	57.510	39.130	17.19	0.00	38.25	4.26
1290	1533	1.959989	GCGTCCCAATCATTTTCCCCT	60.960	52.381	0.00	0.00	0.00	4.79
1291	1534	2.456577	CGTCCCAATCATTTTCCCCTT	58.543	47.619	0.00	0.00	0.00	3.95
1292	1535	3.626930	CGTCCCAATCATTTTCCCCTTA	58.373	45.455	0.00	0.00	0.00	2.69
1293	1536	4.020543	CGTCCCAATCATTTTCCCCTTAA	58.979	43.478	0.00	0.00	0.00	1.85
1294	1537	4.097892	CGTCCCAATCATTTTCCCCTTAAG	59.902	45.833	0.00	0.00	0.00	1.85
1304	1547	1.681229	TCCCCTTAAGGCTGGTCATT	58.319	50.000	16.70	0.00	0.00	2.57
1316	1563	4.475016	AGGCTGGTCATTGGAGTAACTTAT	59.525	41.667	0.00	0.00	0.00	1.73
1351	1598	9.684448	CATGTATATGACACTAGTCTAAAGTGG	57.316	37.037	7.52	0.00	46.97	4.00
1362	1609	5.112129	AGTCTAAAGTGGTGTTTGGTTCT	57.888	39.130	0.00	0.00	0.00	3.01
1363	1610	5.123936	AGTCTAAAGTGGTGTTTGGTTCTC	58.876	41.667	0.00	0.00	0.00	2.87
1364	1611	5.104485	AGTCTAAAGTGGTGTTTGGTTCTCT	60.104	40.000	0.00	0.00	0.00	3.10
1366	1613	6.764560	GTCTAAAGTGGTGTTTGGTTCTCTAA	59.235	38.462	0.00	0.00	0.00	2.10
1368	1615	7.996644	TCTAAAGTGGTGTTTGGTTCTCTAATT	59.003	33.333	0.00	0.00	0.00	1.40
1372	1619	7.690256	AGTGGTGTTTGGTTCTCTAATTCTAT	58.310	34.615	0.00	0.00	0.00	1.98
1375	1622	8.328758	TGGTGTTTGGTTCTCTAATTCTATGAT	58.671	33.333	0.00	0.00	0.00	2.45
1422	1670	5.788533	TCATTAGTCCCTAAAAAGTCCCTCA	59.211	40.000	0.00	0.00	29.35	3.86
1433	1681	4.718940	AAAGTCCCTCACTGTTTGTTTG	57.281	40.909	0.00	0.00	34.56	2.93
1444	1692	5.645929	TCACTGTTTGTTTGCAGAGACTAAA	59.354	36.000	0.00	0.00	36.62	1.85
1465	1713	6.860790	AAAAAGTCCCTAGTCTCTTCCTAG	57.139	41.667	0.00	0.00	33.23	3.02
1563	1811	1.380246	GTGCATGGAGGGGCATTGA	60.380	57.895	0.00	0.00	42.75	2.57
1584	1832	5.208121	TGATGGAAAAGTCCCAAAAAGTCT	58.792	37.500	0.00	0.00	44.23	3.24
1655	1904	6.124316	AGTTTAGTCCCTAAAAAGTCCCTC	57.876	41.667	0.00	0.00	37.62	4.30
1735	1985	3.032459	GTGGAAACAAACACCCCCTAAA	58.968	45.455	0.00	0.00	46.06	1.85
1739	1989	5.903589	TGGAAACAAACACCCCCTAAATTAA	59.096	36.000	0.00	0.00	37.44	1.40
1742	1992	8.764558	GGAAACAAACACCCCCTAAATTAATAT	58.235	33.333	0.00	0.00	0.00	1.28
1746	1996	9.197306	ACAAACACCCCCTAAATTAATATCTTC	57.803	33.333	0.00	0.00	0.00	2.87
1797	2047	8.796475	GTGTCATATATGGCTTCATTTAATGGT	58.204	33.333	17.81	0.00	32.56	3.55
1823	2073	7.873719	TGTAGACTCATTTTGTCTTGGAAAA	57.126	32.000	1.67	0.00	41.45	2.29
1824	2074	8.287439	TGTAGACTCATTTTGTCTTGGAAAAA	57.713	30.769	1.67	0.00	41.45	1.94
1825	2075	8.188139	TGTAGACTCATTTTGTCTTGGAAAAAC	58.812	33.333	1.67	0.00	41.45	2.43
1826	2076	6.265577	AGACTCATTTTGTCTTGGAAAAACG	58.734	36.000	0.00	0.00	41.45	3.60
1827	2077	6.094881	AGACTCATTTTGTCTTGGAAAAACGA	59.905	34.615	0.00	0.00	41.45	3.85
1878	2128	4.870426	ACTTCTCATTAACTACATGCCACG	59.130	41.667	0.00	0.00	0.00	4.94
1894	2144	4.295051	TGCCACGTAAGCAAAAATTTCTC	58.705	39.130	9.80	0.00	45.62	2.87
1895	2145	4.202060	TGCCACGTAAGCAAAAATTTCTCA	60.202	37.500	9.80	0.00	45.62	3.27
1900	2150	7.646130	CCACGTAAGCAAAAATTTCTCAAAGTA	59.354	33.333	0.00	0.00	45.62	2.24
1913	2163	7.807687	TTTCTCAAAGTACGCTATGTTACTC	57.192	36.000	0.00	0.00	0.00	2.59
1914	2164	5.888105	TCTCAAAGTACGCTATGTTACTCC	58.112	41.667	0.00	0.00	0.00	3.85
1915	2165	5.002464	TCAAAGTACGCTATGTTACTCCC	57.998	43.478	0.00	0.00	0.00	4.30
1916	2166	4.463539	TCAAAGTACGCTATGTTACTCCCA	59.536	41.667	0.00	0.00	0.00	4.37
1917	2167	4.382345	AAGTACGCTATGTTACTCCCAC	57.618	45.455	0.00	0.00	0.00	4.61
1918	2168	3.629087	AGTACGCTATGTTACTCCCACT	58.371	45.455	0.00	0.00	0.00	4.00
1919	2169	4.785301	AGTACGCTATGTTACTCCCACTA	58.215	43.478	0.00	0.00	0.00	2.74
1920	2170	5.383476	AGTACGCTATGTTACTCCCACTAT	58.617	41.667	0.00	0.00	0.00	2.12
1921	2171	4.585955	ACGCTATGTTACTCCCACTATG	57.414	45.455	0.00	0.00	0.00	2.23
1922	2172	4.212716	ACGCTATGTTACTCCCACTATGA	58.787	43.478	0.00	0.00	0.00	2.15
1923	2173	4.037684	ACGCTATGTTACTCCCACTATGAC	59.962	45.833	0.00	0.00	0.00	3.06
1924	2174	4.278669	CGCTATGTTACTCCCACTATGACT	59.721	45.833	0.00	0.00	0.00	3.41
1925	2175	5.472478	CGCTATGTTACTCCCACTATGACTA	59.528	44.000	0.00	0.00	0.00	2.59
1926	2176	6.348622	CGCTATGTTACTCCCACTATGACTAG	60.349	46.154	0.00	0.00	0.00	2.57
1927	2177	5.793030	ATGTTACTCCCACTATGACTAGC	57.207	43.478	0.00	0.00	0.00	3.42
1928	2178	3.958798	TGTTACTCCCACTATGACTAGCC	59.041	47.826	0.00	0.00	0.00	3.93
1938	2188	5.221541	CCACTATGACTAGCCTTAGGGAAAG	60.222	48.000	0.00	0.00	34.73	2.62
2046	2296	3.142951	CAAACCAAACATGACGACCCTA	58.857	45.455	0.00	0.00	0.00	3.53
2085	2335	9.482627	AGAAGAAAATCTCGCTAAACTATATGG	57.517	33.333	0.00	0.00	0.00	2.74
2086	2336	8.608844	AAGAAAATCTCGCTAAACTATATGGG	57.391	34.615	0.00	0.00	0.00	4.00
2109	2359	4.443621	TCAACATTGACCACACGACTTTA	58.556	39.130	0.00	0.00	31.01	1.85
2110	2360	5.060506	TCAACATTGACCACACGACTTTAT	58.939	37.500	0.00	0.00	31.01	1.40
2151	2401	7.010552	GTCGCTTTTGCTTTGATCTCTCTTATA	59.989	37.037	0.00	0.00	44.80	0.98
2201	2451	7.540055	GCCTAAAATGATCTCTTCAACAACTTG	59.460	37.037	0.00	0.00	38.03	3.16
2206	2456	7.572523	ATGATCTCTTCAACAACTTGTTTGA	57.427	32.000	4.30	4.05	38.77	2.69
2250	2500	3.496884	TGTGAAGTTGTAAATCAGACGCC	59.503	43.478	0.00	0.00	0.00	5.68
2287	2537	1.804151	GACACGCCATTGCTTTGAGTA	59.196	47.619	0.00	0.00	34.43	2.59

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
275	276	3.054878	GCTGATTTGGAGTTGCACAAAG	58.945	45.455	6.40	0.00	39.63	2.77
513	516	1.673920	GTTCGTTGGGCTTTTCTGTCA	59.326	47.619	0.00	0.00	0.00	3.58
565	568	2.091588	AGTCTGTTATACGTTTTGCGCG	59.908	45.455	0.00	0.00	46.11	6.86
573	576	6.156748	TGCATCCATTAGTCTGTTATACGT	57.843	37.500	0.00	0.00	0.00	3.57
575	578	8.208718	TGTTTGCATCCATTAGTCTGTTATAC	57.791	34.615	0.00	0.00	0.00	1.47
608	612	1.919816	TCCTGGGAGTGATGCTGCA	60.920	57.895	4.13	4.13	37.27	4.41
877	881	3.119225	GGGACCTCTAGATCGTGCT	57.881	57.895	10.23	0.00	0.00	4.40
927	931	0.951040	GTTTGGGTGACAGCCTCTCG	60.951	60.000	23.55	0.00	36.53	4.04
935	939	0.466555	CCCCTTTCGTTTGGGTGACA	60.467	55.000	8.15	0.00	41.82	3.58
976	980	2.202892	GTCCGTGATCCCGCCTTC	60.203	66.667	0.00	0.00	0.00	3.46
1134	1364	0.748729	CTAGCGGGTTCGAGGAGTCT	60.749	60.000	0.00	0.00	39.00	3.24
1136	1366	1.753463	CCTAGCGGGTTCGAGGAGT	60.753	63.158	0.00	0.00	39.00	3.85
1137	1367	2.491022	CCCTAGCGGGTTCGAGGAG	61.491	68.421	0.00	0.00	46.12	3.69
1138	1368	2.441532	CCCTAGCGGGTTCGAGGA	60.442	66.667	0.00	0.00	46.12	3.71
1194	1427	0.391927	TCCGGACGCAATAAACCTGG	60.392	55.000	0.00	0.00	0.00	4.45
1290	1533	4.288626	AGTTACTCCAATGACCAGCCTTAA	59.711	41.667	0.00	0.00	0.00	1.85
1291	1534	3.844211	AGTTACTCCAATGACCAGCCTTA	59.156	43.478	0.00	0.00	0.00	2.69
1292	1535	2.644798	AGTTACTCCAATGACCAGCCTT	59.355	45.455	0.00	0.00	0.00	4.35
1293	1536	2.269940	AGTTACTCCAATGACCAGCCT	58.730	47.619	0.00	0.00	0.00	4.58
1294	1537	2.789409	AGTTACTCCAATGACCAGCC	57.211	50.000	0.00	0.00	0.00	4.85
1304	1547	8.818622	ACATGACACTAGTATAAGTTACTCCA	57.181	34.615	0.00	0.00	0.00	3.86
1328	1575	8.684520	ACACCACTTTAGACTAGTGTCATATAC	58.315	37.037	0.00	0.00	45.20	1.47
1331	1578	7.534723	AACACCACTTTAGACTAGTGTCATA	57.465	36.000	0.00	0.00	45.20	2.15
1347	1594	5.941788	AGAATTAGAGAACCAAACACCACT	58.058	37.500	0.00	0.00	0.00	4.00
1349	1596	7.685481	TCATAGAATTAGAGAACCAAACACCA	58.315	34.615	0.00	0.00	0.00	4.17
1350	1597	8.738645	ATCATAGAATTAGAGAACCAAACACC	57.261	34.615	0.00	0.00	0.00	4.16
1400	1648	5.791141	AGTGAGGGACTTTTTAGGGACTAAT	59.209	40.000	0.00	0.00	46.66	1.73
1401	1649	5.012768	CAGTGAGGGACTTTTTAGGGACTAA	59.987	44.000	0.00	0.00	45.97	2.24
1422	1670	6.509418	TTTTAGTCTCTGCAAACAAACAGT	57.491	33.333	0.00	0.00	35.37	3.55
1444	1692	5.799978	TCTAGGAAGAGACTAGGGACTTT	57.200	43.478	0.00	0.00	41.75	2.66
1465	1713	7.315890	GGGCAACATGATTATTTAATAGCCTC	58.684	38.462	0.00	0.00	37.42	4.70
1469	1717	9.520515	ACTAGGGGCAACATGATTATTTAATAG	57.479	33.333	0.00	0.00	39.74	1.73
1478	1726	9.875708	TTTTTATATACTAGGGGCAACATGATT	57.124	29.630	0.00	0.00	39.74	2.57
1544	1792	2.042639	AATGCCCCTCCATGCACC	60.043	61.111	0.00	0.00	40.88	5.01
1545	1793	0.757935	ATCAATGCCCCTCCATGCAC	60.758	55.000	0.00	0.00	40.88	4.57
1563	1811	5.208121	TGAGACTTTTTGGGACTTTTCCAT	58.792	37.500	0.00	0.00	44.98	3.41
1605	1854	7.122799	AGGCATTTGGGACTAAATAAAGAAGAC	59.877	37.037	0.00	0.00	0.00	3.01
1613	1862	8.554011	ACTAAACTAGGCATTTGGGACTAAATA	58.446	33.333	0.00	0.00	0.00	1.40
1671	1921	7.412853	ACTAGAAAAAGTCCCTCATAGAGAC	57.587	40.000	0.00	0.00	0.00	3.36
1714	1964	2.368311	TAGGGGGTGTTTGTTTCCAC	57.632	50.000	0.00	0.00	0.00	4.02
1765	2015	9.797642	AAATGAAGCCATATATGACACTATCAA	57.202	29.630	14.54	0.00	34.90	2.57
1779	2029	8.682710	GTCTACAAACCATTAAATGAAGCCATA	58.317	33.333	0.00	0.00	31.59	2.74
1781	2031	6.719370	AGTCTACAAACCATTAAATGAAGCCA	59.281	34.615	0.00	0.00	0.00	4.75
1783	2033	7.816640	TGAGTCTACAAACCATTAAATGAAGC	58.183	34.615	0.00	0.00	0.00	3.86
1793	2043	7.255590	CCAAGACAAAATGAGTCTACAAACCAT	60.256	37.037	0.00	0.00	45.11	3.55
1795	2045	6.262273	TCCAAGACAAAATGAGTCTACAAACC	59.738	38.462	0.00	0.00	45.11	3.27
1797	2047	7.873719	TTCCAAGACAAAATGAGTCTACAAA	57.126	32.000	0.00	0.00	45.11	2.83
1810	2060	8.622157	TGTAACATATCGTTTTTCCAAGACAAA	58.378	29.630	0.00	0.00	39.14	2.83
1814	2064	7.972832	ACTGTAACATATCGTTTTTCCAAGA	57.027	32.000	0.00	0.00	39.14	3.02
1854	2104	6.040247	CGTGGCATGTAGTTAATGAGAAGTA	58.960	40.000	0.00	0.00	0.00	2.24
1867	2117	3.822594	TTTTGCTTACGTGGCATGTAG	57.177	42.857	18.21	13.67	39.54	2.74
1872	2122	4.202060	TGAGAAATTTTTGCTTACGTGGCA	60.202	37.500	12.76	12.76	37.97	4.92
1878	2128	7.378728	AGCGTACTTTGAGAAATTTTTGCTTAC	59.621	33.333	0.00	0.00	0.00	2.34
1894	2144	4.565564	GTGGGAGTAACATAGCGTACTTTG	59.434	45.833	0.00	0.00	0.00	2.77
1895	2145	4.465305	AGTGGGAGTAACATAGCGTACTTT	59.535	41.667	0.00	0.00	0.00	2.66
1900	2150	4.037684	GTCATAGTGGGAGTAACATAGCGT	59.962	45.833	0.00	0.00	0.00	5.07
1913	2163	2.900546	CCCTAAGGCTAGTCATAGTGGG	59.099	54.545	5.92	0.00	0.00	4.61
1914	2164	3.845860	TCCCTAAGGCTAGTCATAGTGG	58.154	50.000	5.92	6.78	0.00	4.00
1915	2165	5.221541	CCTTTCCCTAAGGCTAGTCATAGTG	60.222	48.000	5.92	0.00	46.66	2.74
1916	2166	4.902448	CCTTTCCCTAAGGCTAGTCATAGT	59.098	45.833	5.92	0.00	46.66	2.12
1917	2167	5.476091	CCTTTCCCTAAGGCTAGTCATAG	57.524	47.826	0.00	0.00	46.66	2.23
1928	2178	7.898014	AATATAAAGTTGGCCTTTCCCTAAG	57.102	36.000	3.32	0.00	42.44	2.18
1989	2239	4.964262	ACCCGAATTGTATCCCACTTACTA	59.036	41.667	0.00	0.00	0.00	1.82
2027	2277	3.071892	TCTTAGGGTCGTCATGTTTGGTT	59.928	43.478	0.00	0.00	0.00	3.67
2029	2279	3.328382	TCTTAGGGTCGTCATGTTTGG	57.672	47.619	0.00	0.00	0.00	3.28
2109	2359	9.612620	GCAAAAGCGACATTAGCTATATTTTAT	57.387	29.630	0.00	0.00	45.31	1.40
2110	2360	8.836413	AGCAAAAGCGACATTAGCTATATTTTA	58.164	29.630	0.00	0.00	45.31	1.52
2133	2383	8.646004	AGTGCTATTATAAGAGAGATCAAAGCA	58.354	33.333	11.29	0.00	33.07	3.91
2151	2401	5.046304	CAGCCATGGTACCTATAGTGCTATT	60.046	44.000	14.67	0.00	29.75	1.73
2163	2413	2.137810	TTTTAGGCAGCCATGGTACC	57.862	50.000	15.80	12.41	0.00	3.34
2171	2421	4.202441	TGAAGAGATCATTTTAGGCAGCC	58.798	43.478	1.84	1.84	31.50	4.85
2241	2491	0.539051	CCCTCTCTTTGGCGTCTGAT	59.461	55.000	0.00	0.00	0.00	2.90
2273	2523	2.801063	CGGCAATACTCAAAGCAATGG	58.199	47.619	0.00	0.00	0.00	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.