Multiple sequence alignment - TraesCS2A01G247500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G247500 chr2A 100.000 3506 0 0 1 3506 366722279 366718774 0.000000e+00 6475.0
1 TraesCS2A01G247500 chr2A 88.089 1486 145 23 1 1464 60750504 60751979 0.000000e+00 1735.0
2 TraesCS2A01G247500 chr2A 89.880 751 50 13 1569 2293 568382369 568381619 0.000000e+00 942.0
3 TraesCS2A01G247500 chr2A 90.448 513 47 2 1569 2081 279749207 279748697 0.000000e+00 675.0
4 TraesCS2A01G247500 chr2A 94.495 327 16 2 2622 2947 30491863 30492188 1.450000e-138 503.0
5 TraesCS2A01G247500 chr2A 88.667 300 26 8 2619 2912 645271762 645271465 3.330000e-95 359.0
6 TraesCS2A01G247500 chr2A 83.979 387 46 15 2619 2993 271112270 271111888 1.200000e-94 357.0
7 TraesCS2A01G247500 chr2A 83.896 385 49 12 2619 2993 166388789 166389170 4.300000e-94 355.0
8 TraesCS2A01G247500 chr2A 83.679 386 48 14 2619 2993 271120430 271120049 2.000000e-92 350.0
9 TraesCS2A01G247500 chr2A 88.015 267 30 2 1302 1567 279749518 279749253 7.310000e-82 315.0
10 TraesCS2A01G247500 chr2A 86.408 206 25 2 1329 1531 335781314 335781109 4.550000e-54 222.0
11 TraesCS2A01G247500 chr5A 89.397 1575 124 25 1 1567 248360340 248358801 0.000000e+00 1943.0
12 TraesCS2A01G247500 chr5A 91.779 669 39 11 2671 3330 304713573 304714234 0.000000e+00 917.0
13 TraesCS2A01G247500 chr5A 91.799 378 31 0 1916 2293 248358532 248358155 8.620000e-146 527.0
14 TraesCS2A01G247500 chr5A 92.021 376 26 3 1627 2000 665072452 665072079 3.100000e-145 525.0
15 TraesCS2A01G247500 chr5A 91.005 378 30 3 1624 1998 610040713 610040337 1.120000e-139 507.0
16 TraesCS2A01G247500 chr5A 91.498 247 19 2 2206 2451 65908678 65908433 4.330000e-89 339.0
17 TraesCS2A01G247500 chr5A 82.552 384 50 17 2619 2990 233553622 233554000 4.370000e-84 322.0
18 TraesCS2A01G247500 chr5A 91.589 214 16 2 2422 2634 191313842 191313630 9.520000e-76 294.0
19 TraesCS2A01G247500 chr5A 91.121 214 17 2 2422 2634 191339174 191338962 4.430000e-74 289.0
20 TraesCS2A01G247500 chr5A 84.615 247 21 11 2146 2386 219842066 219841831 2.720000e-56 230.0
21 TraesCS2A01G247500 chr5A 94.574 129 5 2 2269 2395 410752300 410752172 7.680000e-47 198.0
22 TraesCS2A01G247500 chr5A 92.248 129 8 2 2269 2395 410739543 410739415 7.730000e-42 182.0
23 TraesCS2A01G247500 chr5A 85.526 152 17 5 2114 2261 666806766 666806616 1.690000e-33 154.0
24 TraesCS2A01G247500 chr5A 86.598 97 10 3 2028 2123 243367588 243367494 1.720000e-18 104.0
25 TraesCS2A01G247500 chr3A 87.466 1492 156 27 1 1473 352854161 352852682 0.000000e+00 1690.0
26 TraesCS2A01G247500 chr3A 90.061 1308 108 19 26 1319 418142619 418143918 0.000000e+00 1676.0
27 TraesCS2A01G247500 chr3A 85.470 1576 172 45 1 1536 144422993 144421435 0.000000e+00 1589.0
28 TraesCS2A01G247500 chr3A 88.164 414 48 1 1569 1981 335917768 335918181 3.140000e-135 492.0
29 TraesCS2A01G247500 chr3A 91.411 163 12 2 2118 2278 100337934 100337772 4.550000e-54 222.0
30 TraesCS2A01G247500 chr3A 91.489 94 4 4 2544 2634 145330798 145330706 3.670000e-25 126.0
31 TraesCS2A01G247500 chr3A 90.244 82 8 0 1437 1518 409277044 409276963 1.330000e-19 108.0
32 TraesCS2A01G247500 chr3A 93.220 59 2 2 2557 2614 683303286 683303343 6.240000e-13 86.1
33 TraesCS2A01G247500 chr7A 89.454 1337 123 16 1 1325 411498638 411499968 0.000000e+00 1672.0
34 TraesCS2A01G247500 chr7A 89.398 1330 125 14 1 1318 411513371 411514696 0.000000e+00 1661.0
35 TraesCS2A01G247500 chr7A 86.689 1480 167 27 1 1464 152813744 152815209 0.000000e+00 1615.0
36 TraesCS2A01G247500 chr7A 86.192 1434 173 21 1 1421 366605780 366607201 0.000000e+00 1528.0
37 TraesCS2A01G247500 chr7A 90.452 775 51 20 2748 3506 407272334 407271567 0.000000e+00 1000.0
38 TraesCS2A01G247500 chr7A 90.065 775 53 20 2748 3506 308592922 308592156 0.000000e+00 983.0
39 TraesCS2A01G247500 chr7A 83.117 385 52 13 2619 2993 682801033 682800652 4.330000e-89 339.0
40 TraesCS2A01G247500 chr7A 87.500 200 23 2 2094 2293 302239034 302238837 2.720000e-56 230.0
41 TraesCS2A01G247500 chr7A 85.027 187 19 8 2504 2684 591934135 591933952 7.730000e-42 182.0
42 TraesCS2A01G247500 chr7A 85.567 97 12 2 2028 2123 391344188 391344093 2.230000e-17 100.0
43 TraesCS2A01G247500 chr4A 88.982 1316 127 17 1 1309 429011772 429010468 0.000000e+00 1611.0
44 TraesCS2A01G247500 chr4A 90.553 434 33 6 3075 3506 166500301 166500728 5.080000e-158 568.0
45 TraesCS2A01G247500 chr4A 91.008 367 32 1 2085 2451 377335684 377336049 8.740000e-136 494.0
46 TraesCS2A01G247500 chr4A 85.567 97 12 2 2028 2123 321338788 321338693 2.230000e-17 100.0
47 TraesCS2A01G247500 chr1A 85.141 1595 193 33 1 1567 111966591 111965013 0.000000e+00 1592.0
48 TraesCS2A01G247500 chr1A 94.630 838 40 4 2671 3506 175865041 175864207 0.000000e+00 1293.0
49 TraesCS2A01G247500 chr1A 95.613 661 26 3 2671 3329 175840232 175839573 0.000000e+00 1057.0
50 TraesCS2A01G247500 chr1A 80.991 989 149 29 602 1567 111699509 111698537 0.000000e+00 749.0
51 TraesCS2A01G247500 chr1A 91.830 306 19 4 1569 1871 111964967 111964665 4.180000e-114 422.0
52 TraesCS2A01G247500 chr1A 91.803 305 20 4 1569 1871 111698491 111698190 1.500000e-113 420.0
53 TraesCS2A01G247500 chr1A 89.231 325 31 4 1665 1986 183215874 183216197 1.520000e-108 403.0
54 TraesCS2A01G247500 chr1A 87.500 128 15 1 2269 2395 473478627 473478754 2.820000e-31 147.0
55 TraesCS2A01G247500 chr1A 86.905 84 10 1 2139 2222 157401034 157400952 3.730000e-15 93.5
56 TraesCS2A01G247500 chrUn 91.274 848 44 18 2665 3506 318815239 318814416 0.000000e+00 1129.0
57 TraesCS2A01G247500 chr6A 88.546 777 60 21 2748 3506 282883767 282884532 0.000000e+00 915.0
58 TraesCS2A01G247500 chr6A 88.546 777 57 20 2748 3506 282910173 282910935 0.000000e+00 913.0
59 TraesCS2A01G247500 chr6A 86.486 777 74 22 2748 3506 167851578 167852341 0.000000e+00 824.0
60 TraesCS2A01G247500 chr6A 92.612 379 25 2 1624 2000 446715008 446714631 3.080000e-150 542.0
61 TraesCS2A01G247500 chr6A 90.508 295 23 5 2622 2913 259503317 259503609 5.490000e-103 385.0
62 TraesCS2A01G247500 chr6A 89.492 295 25 6 2622 2913 259496634 259496925 5.530000e-98 368.0
63 TraesCS2A01G247500 chr6A 84.579 214 30 3 2171 2382 367494453 367494241 3.550000e-50 209.0
64 TraesCS2A01G247500 chr4B 84.270 89 13 1 2139 2227 255374156 255374243 6.240000e-13 86.1
65 TraesCS2A01G247500 chr4D 94.118 51 3 0 2073 2123 254175965 254175915 1.040000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G247500 chr2A 366718774 366722279 3505 True 6475.0 6475 100.0000 1 3506 1 chr2A.!!$R4 3505
1 TraesCS2A01G247500 chr2A 60750504 60751979 1475 False 1735.0 1735 88.0890 1 1464 1 chr2A.!!$F2 1463
2 TraesCS2A01G247500 chr2A 568381619 568382369 750 True 942.0 942 89.8800 1569 2293 1 chr2A.!!$R5 724
3 TraesCS2A01G247500 chr2A 279748697 279749518 821 True 495.0 675 89.2315 1302 2081 2 chr2A.!!$R7 779
4 TraesCS2A01G247500 chr5A 248358155 248360340 2185 True 1235.0 1943 90.5980 1 2293 2 chr5A.!!$R11 2292
5 TraesCS2A01G247500 chr5A 304713573 304714234 661 False 917.0 917 91.7790 2671 3330 1 chr5A.!!$F2 659
6 TraesCS2A01G247500 chr3A 352852682 352854161 1479 True 1690.0 1690 87.4660 1 1473 1 chr3A.!!$R4 1472
7 TraesCS2A01G247500 chr3A 418142619 418143918 1299 False 1676.0 1676 90.0610 26 1319 1 chr3A.!!$F2 1293
8 TraesCS2A01G247500 chr3A 144421435 144422993 1558 True 1589.0 1589 85.4700 1 1536 1 chr3A.!!$R2 1535
9 TraesCS2A01G247500 chr7A 411498638 411499968 1330 False 1672.0 1672 89.4540 1 1325 1 chr7A.!!$F3 1324
10 TraesCS2A01G247500 chr7A 411513371 411514696 1325 False 1661.0 1661 89.3980 1 1318 1 chr7A.!!$F4 1317
11 TraesCS2A01G247500 chr7A 152813744 152815209 1465 False 1615.0 1615 86.6890 1 1464 1 chr7A.!!$F1 1463
12 TraesCS2A01G247500 chr7A 366605780 366607201 1421 False 1528.0 1528 86.1920 1 1421 1 chr7A.!!$F2 1420
13 TraesCS2A01G247500 chr7A 407271567 407272334 767 True 1000.0 1000 90.4520 2748 3506 1 chr7A.!!$R4 758
14 TraesCS2A01G247500 chr7A 308592156 308592922 766 True 983.0 983 90.0650 2748 3506 1 chr7A.!!$R2 758
15 TraesCS2A01G247500 chr4A 429010468 429011772 1304 True 1611.0 1611 88.9820 1 1309 1 chr4A.!!$R2 1308
16 TraesCS2A01G247500 chr1A 175864207 175865041 834 True 1293.0 1293 94.6300 2671 3506 1 chr1A.!!$R3 835
17 TraesCS2A01G247500 chr1A 175839573 175840232 659 True 1057.0 1057 95.6130 2671 3329 1 chr1A.!!$R2 658
18 TraesCS2A01G247500 chr1A 111964665 111966591 1926 True 1007.0 1592 88.4855 1 1871 2 chr1A.!!$R5 1870
19 TraesCS2A01G247500 chr1A 111698190 111699509 1319 True 584.5 749 86.3970 602 1871 2 chr1A.!!$R4 1269
20 TraesCS2A01G247500 chrUn 318814416 318815239 823 True 1129.0 1129 91.2740 2665 3506 1 chrUn.!!$R1 841
21 TraesCS2A01G247500 chr6A 282883767 282884532 765 False 915.0 915 88.5460 2748 3506 1 chr6A.!!$F4 758
22 TraesCS2A01G247500 chr6A 282910173 282910935 762 False 913.0 913 88.5460 2748 3506 1 chr6A.!!$F5 758
23 TraesCS2A01G247500 chr6A 167851578 167852341 763 False 824.0 824 86.4860 2748 3506 1 chr6A.!!$F1 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 487 1.337260 GCAAGGAAGAAGAGCGAGTCA 60.337 52.381 0.0 0.0 0.00 3.41 F
2240 2472 0.911769 TCCTGTTGGGCGATGAAGAT 59.088 50.000 0.0 0.0 34.39 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2434 2666 0.037232 GGACCGAATCGATCCCATCC 60.037 60.000 4.29 0.47 0.00 3.51 R
3284 3546 1.005215 CAGATGCCTTCCAGGGTTTCT 59.995 52.381 0.00 0.00 35.37 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 162 2.514803 CCTTCCACCCTTTACCAAGTG 58.485 52.381 0.00 0.00 0.00 3.16
279 293 3.909086 GAGGGGCTGAGCAAAGCGT 62.909 63.158 6.82 0.00 44.52 5.07
346 361 2.134354 TGACATGGCAATATGGGAGGA 58.866 47.619 0.00 0.00 32.32 3.71
375 390 2.027561 AGCAAGTGGTAGGTATCGCAAA 60.028 45.455 0.00 0.00 0.00 3.68
409 428 5.509622 CGAAAAACTAGCAAGCAAAGATAGC 59.490 40.000 0.00 0.00 0.00 2.97
468 487 1.337260 GCAAGGAAGAAGAGCGAGTCA 60.337 52.381 0.00 0.00 0.00 3.41
512 531 2.798283 GTCGAACGAATCCTCACAAACA 59.202 45.455 0.00 0.00 0.00 2.83
534 555 3.508744 GACGTTATCGGAACTAACCCA 57.491 47.619 0.00 0.00 41.85 4.51
688 711 9.515226 AACTACAAATTAAGTGGAGCTCAATAA 57.485 29.630 17.19 8.87 29.08 1.40
832 861 4.161377 GTCTAAGCAATTTAAATGGGGCCA 59.839 41.667 4.39 0.00 0.00 5.36
837 866 4.042684 AGCAATTTAAATGGGGCCAGAAAA 59.957 37.500 4.39 0.00 0.00 2.29
862 891 6.210287 TCAAACAACAATTCCGGTAAAACT 57.790 33.333 0.00 0.00 0.00 2.66
1014 1052 3.939564 GCCATGGCGGAAGGAAAT 58.060 55.556 23.48 0.00 36.56 2.17
1016 1054 1.037030 GCCATGGCGGAAGGAAATGA 61.037 55.000 23.48 0.00 36.56 2.57
1051 1090 3.700539 TGAATCCGAAAATGATGCCACAT 59.299 39.130 0.00 0.00 0.00 3.21
1098 1143 2.565841 GAGATAGCGGTGCAAAAGGAT 58.434 47.619 0.00 0.00 0.00 3.24
1192 1257 1.270465 TGAGAGACACTACGGACACGA 60.270 52.381 0.00 0.00 44.60 4.35
1222 1288 3.272574 AGGGTGCATCTCATACAACAG 57.727 47.619 0.00 0.00 0.00 3.16
1230 1297 5.416639 TGCATCTCATACAACAGAAGCAATT 59.583 36.000 0.00 0.00 39.68 2.32
1250 1319 2.439409 TGTTCTCGGACGGTCATCTTA 58.561 47.619 10.76 0.00 0.00 2.10
1269 1338 4.343239 TCTTAGGGTTATACCTTCGAAGCC 59.657 45.833 19.99 13.46 42.09 4.35
1331 1403 1.760479 TTCACGGGTCGTTGTGGGAT 61.760 55.000 0.00 0.00 38.32 3.85
1344 1416 3.973206 TGTGGGATGTAGTCGTTCATT 57.027 42.857 0.00 0.00 0.00 2.57
1373 1445 1.227321 TTCGGGGTCACGACACAAC 60.227 57.895 1.22 0.00 43.37 3.32
1448 1520 4.519437 GGCGGCGGTAGTGGTACC 62.519 72.222 9.78 4.43 44.99 3.34
1522 1595 2.721425 AAGGGTTTTCGGACTTGACA 57.279 45.000 0.00 0.00 0.00 3.58
1537 1610 2.363147 ACAGCTCCGAGTCCTCCC 60.363 66.667 0.00 0.00 0.00 4.30
1553 1627 3.512516 CCGGGGTCGACGGTAGTC 61.513 72.222 9.92 0.00 46.03 2.59
1567 1641 1.406069 GGTAGTCTCGTGGTACTCGGA 60.406 57.143 10.03 5.23 45.95 4.55
1589 1707 2.248487 GAAGTAGTTGTACTCGCGGTG 58.752 52.381 6.13 1.77 38.66 4.94
1661 1832 2.345991 CTTCGGGTTCGGCCTTGA 59.654 61.111 0.00 0.00 37.43 3.02
1662 1833 1.078426 CTTCGGGTTCGGCCTTGAT 60.078 57.895 0.00 0.00 37.43 2.57
1727 1899 2.156098 GGCAAAAATCCTGTGACGGTA 58.844 47.619 0.00 0.00 0.00 4.02
1814 1988 2.925170 AGAAGCACGAGGGGCACT 60.925 61.111 0.00 0.00 0.00 4.40
1912 2112 1.821753 CAGGGAATGACGAGTGAGACT 59.178 52.381 0.00 0.00 0.00 3.24
1925 2157 2.307392 AGTGAGACTGACAGAGGAGCTA 59.693 50.000 10.08 0.00 0.00 3.32
1957 2189 1.000521 CATGGGAGAAGGCAAGGCA 60.001 57.895 0.00 0.00 0.00 4.75
1982 2214 2.343758 GCTGGACGAACAGGAGCA 59.656 61.111 11.79 0.00 38.90 4.26
2004 2236 2.285442 GGAGGGCAGGGTGTAGGT 60.285 66.667 0.00 0.00 0.00 3.08
2021 2253 2.933287 TGAACCATGGAGGCCGGT 60.933 61.111 21.47 0.00 43.14 5.28
2092 2324 1.067582 CGGGGTAGATCTTGGTCGC 59.932 63.158 0.00 0.00 0.00 5.19
2194 2426 1.569548 TCCATCGGAGTAGGAAGGACT 59.430 52.381 0.00 0.00 0.00 3.85
2240 2472 0.911769 TCCTGTTGGGCGATGAAGAT 59.088 50.000 0.00 0.00 34.39 2.40
2364 2596 4.864334 GATGGCGGCACTGGAGGG 62.864 72.222 16.34 0.00 0.00 4.30
2372 2604 3.077556 CACTGGAGGGACGGGGAG 61.078 72.222 0.00 0.00 0.00 4.30
2373 2605 3.273654 ACTGGAGGGACGGGGAGA 61.274 66.667 0.00 0.00 0.00 3.71
2374 2606 2.443016 CTGGAGGGACGGGGAGAG 60.443 72.222 0.00 0.00 0.00 3.20
2375 2607 4.075793 TGGAGGGACGGGGAGAGG 62.076 72.222 0.00 0.00 0.00 3.69
2376 2608 4.862823 GGAGGGACGGGGAGAGGG 62.863 77.778 0.00 0.00 0.00 4.30
2377 2609 3.752167 GAGGGACGGGGAGAGGGA 61.752 72.222 0.00 0.00 0.00 4.20
2378 2610 3.742248 GAGGGACGGGGAGAGGGAG 62.742 73.684 0.00 0.00 0.00 4.30
2381 2613 4.816984 GACGGGGAGAGGGAGCGA 62.817 72.222 0.00 0.00 0.00 4.93
2382 2614 4.144727 ACGGGGAGAGGGAGCGAT 62.145 66.667 0.00 0.00 0.00 4.58
2383 2615 3.610669 CGGGGAGAGGGAGCGATG 61.611 72.222 0.00 0.00 0.00 3.84
2384 2616 3.934962 GGGGAGAGGGAGCGATGC 61.935 72.222 0.00 0.00 0.00 3.91
2385 2617 4.292178 GGGAGAGGGAGCGATGCG 62.292 72.222 0.00 0.00 0.00 4.73
2386 2618 4.292178 GGAGAGGGAGCGATGCGG 62.292 72.222 0.00 0.00 0.00 5.69
2387 2619 4.959596 GAGAGGGAGCGATGCGGC 62.960 72.222 0.00 0.00 0.00 6.53
2397 2629 4.899239 GATGCGGCGGAGTGGGAG 62.899 72.222 9.78 0.00 0.00 4.30
2403 2635 4.436998 GCGGAGTGGGAGGACGTG 62.437 72.222 0.00 0.00 0.00 4.49
2404 2636 2.675423 CGGAGTGGGAGGACGTGA 60.675 66.667 0.00 0.00 0.00 4.35
2405 2637 2.971452 GGAGTGGGAGGACGTGAC 59.029 66.667 0.00 0.00 0.00 3.67
2406 2638 2.567049 GAGTGGGAGGACGTGACG 59.433 66.667 2.24 2.24 0.00 4.35
2407 2639 1.970114 GAGTGGGAGGACGTGACGA 60.970 63.158 13.70 0.00 0.00 4.20
2408 2640 1.924320 GAGTGGGAGGACGTGACGAG 61.924 65.000 13.70 0.00 0.00 4.18
2409 2641 2.675423 TGGGAGGACGTGACGAGG 60.675 66.667 13.70 0.00 0.00 4.63
2410 2642 3.450115 GGGAGGACGTGACGAGGG 61.450 72.222 13.70 0.00 0.00 4.30
2411 2643 3.450115 GGAGGACGTGACGAGGGG 61.450 72.222 13.70 0.00 0.00 4.79
2412 2644 4.131088 GAGGACGTGACGAGGGGC 62.131 72.222 13.70 0.00 0.00 5.80
2413 2645 4.988716 AGGACGTGACGAGGGGCA 62.989 66.667 13.70 0.00 0.00 5.36
2414 2646 3.771160 GGACGTGACGAGGGGCAT 61.771 66.667 13.70 0.00 0.00 4.40
2415 2647 2.509336 GACGTGACGAGGGGCATG 60.509 66.667 13.70 0.00 0.00 4.06
2416 2648 3.296709 GACGTGACGAGGGGCATGT 62.297 63.158 13.70 0.00 36.99 3.21
2417 2649 2.815211 CGTGACGAGGGGCATGTG 60.815 66.667 0.00 0.00 0.00 3.21
2418 2650 2.347490 GTGACGAGGGGCATGTGT 59.653 61.111 0.00 0.00 0.00 3.72
2419 2651 2.034879 GTGACGAGGGGCATGTGTG 61.035 63.158 0.00 0.00 0.00 3.82
2429 2661 3.725459 CATGTGTGCGGCGCAGAA 61.725 61.111 37.27 24.04 40.08 3.02
2430 2662 3.425713 ATGTGTGCGGCGCAGAAG 61.426 61.111 37.27 0.00 40.08 2.85
2433 2665 4.617520 TGTGCGGCGCAGAAGGAA 62.618 61.111 37.27 13.79 40.08 3.36
2434 2666 3.793144 GTGCGGCGCAGAAGGAAG 61.793 66.667 37.27 0.00 40.08 3.46
2436 2668 4.760047 GCGGCGCAGAAGGAAGGA 62.760 66.667 29.21 0.00 0.00 3.36
2437 2669 2.187946 CGGCGCAGAAGGAAGGAT 59.812 61.111 10.83 0.00 0.00 3.24
2438 2670 2.176273 CGGCGCAGAAGGAAGGATG 61.176 63.158 10.83 0.00 0.00 3.51
2439 2671 1.821332 GGCGCAGAAGGAAGGATGG 60.821 63.158 10.83 0.00 0.00 3.51
2440 2672 1.821332 GCGCAGAAGGAAGGATGGG 60.821 63.158 0.30 0.00 0.00 4.00
2441 2673 1.907739 CGCAGAAGGAAGGATGGGA 59.092 57.895 0.00 0.00 0.00 4.37
2442 2674 0.471617 CGCAGAAGGAAGGATGGGAT 59.528 55.000 0.00 0.00 0.00 3.85
2443 2675 1.542108 CGCAGAAGGAAGGATGGGATC 60.542 57.143 0.00 0.00 0.00 3.36
2444 2676 1.542108 GCAGAAGGAAGGATGGGATCG 60.542 57.143 0.00 0.00 0.00 3.69
2445 2677 2.042464 CAGAAGGAAGGATGGGATCGA 58.958 52.381 0.00 0.00 0.00 3.59
2446 2678 2.636893 CAGAAGGAAGGATGGGATCGAT 59.363 50.000 0.00 0.00 0.00 3.59
2447 2679 3.072184 CAGAAGGAAGGATGGGATCGATT 59.928 47.826 0.00 0.00 0.00 3.34
2448 2680 3.326297 AGAAGGAAGGATGGGATCGATTC 59.674 47.826 0.00 0.00 0.00 2.52
2449 2681 1.620819 AGGAAGGATGGGATCGATTCG 59.379 52.381 0.00 0.00 30.68 3.34
2450 2682 1.338200 GGAAGGATGGGATCGATTCGG 60.338 57.143 6.18 0.00 30.68 4.30
2451 2683 1.344763 GAAGGATGGGATCGATTCGGT 59.655 52.381 6.18 0.00 0.00 4.69
2452 2684 0.969894 AGGATGGGATCGATTCGGTC 59.030 55.000 10.89 10.89 36.12 4.79
2458 2690 3.875838 GATCGATTCGGTCCCTCTG 57.124 57.895 8.15 0.00 29.89 3.35
2459 2691 0.315568 GATCGATTCGGTCCCTCTGG 59.684 60.000 8.15 0.00 29.89 3.86
2460 2692 0.397254 ATCGATTCGGTCCCTCTGGT 60.397 55.000 6.18 0.00 0.00 4.00
2461 2693 1.141881 CGATTCGGTCCCTCTGGTG 59.858 63.158 0.00 0.00 0.00 4.17
2462 2694 1.522569 GATTCGGTCCCTCTGGTGG 59.477 63.158 0.00 0.00 0.00 4.61
2463 2695 2.595009 GATTCGGTCCCTCTGGTGGC 62.595 65.000 0.00 0.00 0.00 5.01
2475 2707 4.489771 GGTGGCGGGGTGGAGATG 62.490 72.222 0.00 0.00 0.00 2.90
2476 2708 3.399181 GTGGCGGGGTGGAGATGA 61.399 66.667 0.00 0.00 0.00 2.92
2477 2709 3.083349 TGGCGGGGTGGAGATGAG 61.083 66.667 0.00 0.00 0.00 2.90
2478 2710 3.866582 GGCGGGGTGGAGATGAGG 61.867 72.222 0.00 0.00 0.00 3.86
2479 2711 3.866582 GCGGGGTGGAGATGAGGG 61.867 72.222 0.00 0.00 0.00 4.30
2480 2712 2.041922 CGGGGTGGAGATGAGGGA 60.042 66.667 0.00 0.00 0.00 4.20
2481 2713 1.689233 CGGGGTGGAGATGAGGGAA 60.689 63.158 0.00 0.00 0.00 3.97
2482 2714 1.271840 CGGGGTGGAGATGAGGGAAA 61.272 60.000 0.00 0.00 0.00 3.13
2483 2715 0.548510 GGGGTGGAGATGAGGGAAAG 59.451 60.000 0.00 0.00 0.00 2.62
2484 2716 0.548510 GGGTGGAGATGAGGGAAAGG 59.451 60.000 0.00 0.00 0.00 3.11
2485 2717 0.548510 GGTGGAGATGAGGGAAAGGG 59.451 60.000 0.00 0.00 0.00 3.95
2486 2718 1.584724 GTGGAGATGAGGGAAAGGGA 58.415 55.000 0.00 0.00 0.00 4.20
2487 2719 1.488393 GTGGAGATGAGGGAAAGGGAG 59.512 57.143 0.00 0.00 0.00 4.30
2488 2720 1.366082 TGGAGATGAGGGAAAGGGAGA 59.634 52.381 0.00 0.00 0.00 3.71
2489 2721 2.046292 GGAGATGAGGGAAAGGGAGAG 58.954 57.143 0.00 0.00 0.00 3.20
2490 2722 2.359781 GGAGATGAGGGAAAGGGAGAGA 60.360 54.545 0.00 0.00 0.00 3.10
2491 2723 3.586429 GAGATGAGGGAAAGGGAGAGAT 58.414 50.000 0.00 0.00 0.00 2.75
2492 2724 3.578282 GAGATGAGGGAAAGGGAGAGATC 59.422 52.174 0.00 0.00 0.00 2.75
2493 2725 1.781786 TGAGGGAAAGGGAGAGATCG 58.218 55.000 0.00 0.00 0.00 3.69
2494 2726 1.288037 TGAGGGAAAGGGAGAGATCGA 59.712 52.381 0.00 0.00 0.00 3.59
2495 2727 2.091055 TGAGGGAAAGGGAGAGATCGAT 60.091 50.000 0.00 0.00 0.00 3.59
2496 2728 2.560981 GAGGGAAAGGGAGAGATCGATC 59.439 54.545 17.91 17.91 0.00 3.69
2497 2729 1.271102 GGGAAAGGGAGAGATCGATCG 59.729 57.143 19.33 9.36 0.00 3.69
2498 2730 1.271102 GGAAAGGGAGAGATCGATCGG 59.729 57.143 19.33 0.00 0.00 4.18
2499 2731 1.271102 GAAAGGGAGAGATCGATCGGG 59.729 57.143 19.33 0.00 0.00 5.14
2500 2732 0.478942 AAGGGAGAGATCGATCGGGA 59.521 55.000 19.33 0.00 0.00 5.14
2501 2733 0.037590 AGGGAGAGATCGATCGGGAG 59.962 60.000 19.33 0.00 0.00 4.30
2502 2734 0.037017 GGGAGAGATCGATCGGGAGA 59.963 60.000 19.33 0.00 46.90 3.71
2513 2745 3.533697 TCGGGAGATGAGGGTTAGG 57.466 57.895 0.00 0.00 0.00 2.69
2514 2746 0.635009 TCGGGAGATGAGGGTTAGGT 59.365 55.000 0.00 0.00 0.00 3.08
2515 2747 1.007963 TCGGGAGATGAGGGTTAGGTT 59.992 52.381 0.00 0.00 0.00 3.50
2516 2748 2.245546 TCGGGAGATGAGGGTTAGGTTA 59.754 50.000 0.00 0.00 0.00 2.85
2517 2749 2.628657 CGGGAGATGAGGGTTAGGTTAG 59.371 54.545 0.00 0.00 0.00 2.34
2518 2750 2.973406 GGGAGATGAGGGTTAGGTTAGG 59.027 54.545 0.00 0.00 0.00 2.69
2519 2751 3.374984 GGGAGATGAGGGTTAGGTTAGGA 60.375 52.174 0.00 0.00 0.00 2.94
2520 2752 4.494591 GGAGATGAGGGTTAGGTTAGGAT 58.505 47.826 0.00 0.00 0.00 3.24
2521 2753 4.284746 GGAGATGAGGGTTAGGTTAGGATG 59.715 50.000 0.00 0.00 0.00 3.51
2522 2754 4.235372 AGATGAGGGTTAGGTTAGGATGG 58.765 47.826 0.00 0.00 0.00 3.51
2523 2755 3.788116 TGAGGGTTAGGTTAGGATGGA 57.212 47.619 0.00 0.00 0.00 3.41
2524 2756 4.295905 TGAGGGTTAGGTTAGGATGGAT 57.704 45.455 0.00 0.00 0.00 3.41
2525 2757 4.232091 TGAGGGTTAGGTTAGGATGGATC 58.768 47.826 0.00 0.00 0.00 3.36
2526 2758 3.240302 AGGGTTAGGTTAGGATGGATCG 58.760 50.000 0.00 0.00 0.00 3.69
2527 2759 2.302157 GGGTTAGGTTAGGATGGATCGG 59.698 54.545 0.00 0.00 0.00 4.18
2528 2760 2.302157 GGTTAGGTTAGGATGGATCGGG 59.698 54.545 0.00 0.00 0.00 5.14
2529 2761 1.640917 TAGGTTAGGATGGATCGGGC 58.359 55.000 0.00 0.00 0.00 6.13
2530 2762 0.399949 AGGTTAGGATGGATCGGGCA 60.400 55.000 0.00 0.00 0.00 5.36
2531 2763 0.250338 GGTTAGGATGGATCGGGCAC 60.250 60.000 0.00 0.00 0.00 5.01
2532 2764 0.600255 GTTAGGATGGATCGGGCACG 60.600 60.000 0.00 0.00 42.74 5.34
2533 2765 1.754380 TTAGGATGGATCGGGCACGG 61.754 60.000 9.32 0.00 41.39 4.94
2535 2767 4.241555 GATGGATCGGGCACGGCT 62.242 66.667 9.32 0.00 41.39 5.52
2536 2768 4.552365 ATGGATCGGGCACGGCTG 62.552 66.667 9.32 0.00 41.39 4.85
2579 2811 4.031129 CTGCTGCTGGGCCTGAGT 62.031 66.667 15.36 0.00 0.00 3.41
2580 2812 4.340246 TGCTGCTGGGCCTGAGTG 62.340 66.667 15.36 4.18 0.00 3.51
2599 2831 4.554036 CCTGCGGCTAAGGAGGCC 62.554 72.222 0.00 0.00 45.47 5.19
2600 2832 4.554036 CTGCGGCTAAGGAGGCCC 62.554 72.222 0.00 0.00 46.24 5.80
2602 2834 4.109675 GCGGCTAAGGAGGCCCAA 62.110 66.667 0.00 0.00 46.24 4.12
2603 2835 2.190578 CGGCTAAGGAGGCCCAAG 59.809 66.667 0.00 0.00 46.24 3.61
2604 2836 2.367202 CGGCTAAGGAGGCCCAAGA 61.367 63.158 0.00 0.00 46.24 3.02
2605 2837 1.529309 GGCTAAGGAGGCCCAAGAG 59.471 63.158 0.00 0.00 43.49 2.85
2606 2838 1.529309 GCTAAGGAGGCCCAAGAGG 59.471 63.158 0.00 0.00 39.47 3.69
2615 2847 3.612251 CCCAAGAGGCATGGCTTG 58.388 61.111 24.18 17.82 40.81 4.01
2616 2848 1.000521 CCCAAGAGGCATGGCTTGA 60.001 57.895 24.18 0.00 43.11 3.02
2617 2849 1.318158 CCCAAGAGGCATGGCTTGAC 61.318 60.000 24.18 10.82 43.11 3.18
2618 2850 1.318158 CCAAGAGGCATGGCTTGACC 61.318 60.000 24.18 10.44 43.11 4.02
2619 2851 1.000396 AAGAGGCATGGCTTGACCC 60.000 57.895 24.18 10.04 37.83 4.46
2620 2852 1.504275 AAGAGGCATGGCTTGACCCT 61.504 55.000 24.18 12.33 37.83 4.34
2621 2853 1.000396 GAGGCATGGCTTGACCCTT 60.000 57.895 24.18 0.00 37.83 3.95
2622 2854 0.613012 GAGGCATGGCTTGACCCTTT 60.613 55.000 24.18 0.00 37.83 3.11
2623 2855 0.613012 AGGCATGGCTTGACCCTTTC 60.613 55.000 17.44 0.00 37.83 2.62
2624 2856 0.613012 GGCATGGCTTGACCCTTTCT 60.613 55.000 12.86 0.00 37.83 2.52
2625 2857 0.529378 GCATGGCTTGACCCTTTCTG 59.471 55.000 4.32 0.00 37.83 3.02
2626 2858 1.915141 CATGGCTTGACCCTTTCTGT 58.085 50.000 0.00 0.00 37.83 3.41
2627 2859 1.815003 CATGGCTTGACCCTTTCTGTC 59.185 52.381 0.00 0.00 37.83 3.51
2628 2860 1.140312 TGGCTTGACCCTTTCTGTCT 58.860 50.000 0.00 0.00 37.83 3.41
2629 2861 1.072331 TGGCTTGACCCTTTCTGTCTC 59.928 52.381 0.00 0.00 37.83 3.36
2630 2862 1.611936 GGCTTGACCCTTTCTGTCTCC 60.612 57.143 0.00 0.00 33.83 3.71
2631 2863 1.611936 GCTTGACCCTTTCTGTCTCCC 60.612 57.143 0.00 0.00 33.83 4.30
2632 2864 1.981495 CTTGACCCTTTCTGTCTCCCT 59.019 52.381 0.00 0.00 33.83 4.20
2633 2865 2.118403 TGACCCTTTCTGTCTCCCTT 57.882 50.000 0.00 0.00 33.83 3.95
2634 2866 1.978580 TGACCCTTTCTGTCTCCCTTC 59.021 52.381 0.00 0.00 33.83 3.46
2635 2867 2.261729 GACCCTTTCTGTCTCCCTTCT 58.738 52.381 0.00 0.00 0.00 2.85
2636 2868 3.181410 TGACCCTTTCTGTCTCCCTTCTA 60.181 47.826 0.00 0.00 33.83 2.10
2637 2869 3.838903 GACCCTTTCTGTCTCCCTTCTAA 59.161 47.826 0.00 0.00 0.00 2.10
2638 2870 4.439860 ACCCTTTCTGTCTCCCTTCTAAT 58.560 43.478 0.00 0.00 0.00 1.73
2639 2871 4.852697 ACCCTTTCTGTCTCCCTTCTAATT 59.147 41.667 0.00 0.00 0.00 1.40
2640 2872 5.313506 ACCCTTTCTGTCTCCCTTCTAATTT 59.686 40.000 0.00 0.00 0.00 1.82
2641 2873 5.649831 CCCTTTCTGTCTCCCTTCTAATTTG 59.350 44.000 0.00 0.00 0.00 2.32
2642 2874 5.124617 CCTTTCTGTCTCCCTTCTAATTTGC 59.875 44.000 0.00 0.00 0.00 3.68
2643 2875 5.505181 TTCTGTCTCCCTTCTAATTTGCT 57.495 39.130 0.00 0.00 0.00 3.91
2644 2876 5.505181 TCTGTCTCCCTTCTAATTTGCTT 57.495 39.130 0.00 0.00 0.00 3.91
2645 2877 5.880901 TCTGTCTCCCTTCTAATTTGCTTT 58.119 37.500 0.00 0.00 0.00 3.51
2646 2878 7.016153 TCTGTCTCCCTTCTAATTTGCTTTA 57.984 36.000 0.00 0.00 0.00 1.85
2647 2879 7.458397 TCTGTCTCCCTTCTAATTTGCTTTAA 58.542 34.615 0.00 0.00 0.00 1.52
2648 2880 7.390718 TCTGTCTCCCTTCTAATTTGCTTTAAC 59.609 37.037 0.00 0.00 0.00 2.01
2649 2881 7.001674 TGTCTCCCTTCTAATTTGCTTTAACA 58.998 34.615 0.00 0.00 0.00 2.41
2650 2882 7.174946 TGTCTCCCTTCTAATTTGCTTTAACAG 59.825 37.037 0.00 0.00 0.00 3.16
2651 2883 7.390718 GTCTCCCTTCTAATTTGCTTTAACAGA 59.609 37.037 0.00 0.00 0.00 3.41
2652 2884 7.942341 TCTCCCTTCTAATTTGCTTTAACAGAA 59.058 33.333 0.00 0.00 0.00 3.02
2653 2885 8.472007 TCCCTTCTAATTTGCTTTAACAGAAA 57.528 30.769 0.00 0.00 0.00 2.52
2654 2886 8.919145 TCCCTTCTAATTTGCTTTAACAGAAAA 58.081 29.630 0.00 0.00 34.18 2.29
2655 2887 9.541143 CCCTTCTAATTTGCTTTAACAGAAAAA 57.459 29.630 0.00 0.00 33.29 1.94
2664 2896 9.567848 TTTGCTTTAACAGAAAAACAGTTAGAG 57.432 29.630 0.00 0.00 36.50 2.43
2665 2897 8.500753 TGCTTTAACAGAAAAACAGTTAGAGA 57.499 30.769 0.00 0.00 35.94 3.10
2666 2898 8.612619 TGCTTTAACAGAAAAACAGTTAGAGAG 58.387 33.333 0.00 0.00 35.94 3.20
2667 2899 8.070769 GCTTTAACAGAAAAACAGTTAGAGAGG 58.929 37.037 0.00 0.00 35.94 3.69
2668 2900 9.326413 CTTTAACAGAAAAACAGTTAGAGAGGA 57.674 33.333 0.00 0.00 35.94 3.71
2669 2901 8.888579 TTAACAGAAAAACAGTTAGAGAGGAG 57.111 34.615 0.00 0.00 33.37 3.69
2670 2902 6.732896 ACAGAAAAACAGTTAGAGAGGAGA 57.267 37.500 0.00 0.00 0.00 3.71
2671 2903 7.125792 ACAGAAAAACAGTTAGAGAGGAGAA 57.874 36.000 0.00 0.00 0.00 2.87
2672 2904 7.565680 ACAGAAAAACAGTTAGAGAGGAGAAA 58.434 34.615 0.00 0.00 0.00 2.52
2673 2905 8.047310 ACAGAAAAACAGTTAGAGAGGAGAAAA 58.953 33.333 0.00 0.00 0.00 2.29
2674 2906 8.893727 CAGAAAAACAGTTAGAGAGGAGAAAAA 58.106 33.333 0.00 0.00 0.00 1.94
2682 2914 8.364142 CAGTTAGAGAGGAGAAAAAGAAAGAGA 58.636 37.037 0.00 0.00 0.00 3.10
2690 2922 5.941058 GGAGAAAAAGAAAGAGAGGGTTAGG 59.059 44.000 0.00 0.00 0.00 2.69
2692 2924 5.611408 AGAAAAAGAAAGAGAGGGTTAGGGA 59.389 40.000 0.00 0.00 0.00 4.20
2693 2925 5.924769 AAAAGAAAGAGAGGGTTAGGGAA 57.075 39.130 0.00 0.00 0.00 3.97
2856 3090 5.278660 CCAAAACAAGTCCAAAGGATCTGAG 60.279 44.000 0.00 0.00 32.73 3.35
2877 3111 1.729586 TTTGGCAGAGAGGGTGTAGT 58.270 50.000 0.00 0.00 0.00 2.73
2995 3236 4.161189 TGAAATGGTTTGCACTTGGAGAAA 59.839 37.500 0.00 0.00 0.00 2.52
3284 3546 8.034215 AGAAAACAAATCACACAATGAAACTCA 58.966 29.630 0.00 0.00 41.93 3.41
3311 3573 3.347077 CTGGAAGGCATCTGAAACTCT 57.653 47.619 0.00 0.00 0.00 3.24
3390 3652 3.476552 GATGGCACCGGATAGAAAATGA 58.523 45.455 9.46 0.00 0.00 2.57
3440 3712 4.258543 TCTTTGACAAACGAGTGAAACCT 58.741 39.130 0.00 0.00 37.80 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 69 4.761975 TCATACCGGTGTTATGTTCCTTC 58.238 43.478 19.93 0.00 0.00 3.46
346 361 7.548097 CGATACCTACCACTTGCTATATCATT 58.452 38.462 0.00 0.00 0.00 2.57
375 390 6.554334 TTGCTAGTTTTTCGCTCTATTGTT 57.446 33.333 0.00 0.00 0.00 2.83
389 407 5.006386 ACTGCTATCTTTGCTTGCTAGTTT 58.994 37.500 0.00 0.00 0.00 2.66
409 428 3.118775 TGACCATACCCTCGAAATCACTG 60.119 47.826 0.00 0.00 0.00 3.66
461 480 4.732285 TTTGTCTTCTTCATTGACTCGC 57.268 40.909 0.00 0.00 0.00 5.03
468 487 6.231211 ACTACGTCCATTTGTCTTCTTCATT 58.769 36.000 0.00 0.00 0.00 2.57
534 555 4.440663 GCTTCTTTCCAGTGTTGCTTCTTT 60.441 41.667 0.00 0.00 0.00 2.52
766 792 4.832266 TCACCTCTTGCCATGTTTAACAAT 59.168 37.500 0.66 0.00 0.00 2.71
832 861 6.345298 ACCGGAATTGTTGTTTGATTTTTCT 58.655 32.000 9.46 0.00 0.00 2.52
837 866 7.269316 AGTTTTACCGGAATTGTTGTTTGATT 58.731 30.769 9.46 0.00 0.00 2.57
1014 1052 0.327924 ATTCATTGACGTGGCCCTCA 59.672 50.000 0.00 0.00 0.00 3.86
1016 1054 0.394352 GGATTCATTGACGTGGCCCT 60.394 55.000 0.00 0.00 0.00 5.19
1051 1090 3.448301 AGTTACCGGAACCGATATGTTGA 59.552 43.478 9.46 0.00 42.83 3.18
1098 1143 4.927782 GCACACTCCCGCCACACA 62.928 66.667 0.00 0.00 0.00 3.72
1192 1257 3.369042 ATGCACCCTTTGTCTGCAT 57.631 47.368 0.00 0.00 44.51 3.96
1222 1288 1.128692 CCGTCCGAGAACAATTGCTTC 59.871 52.381 5.05 8.75 0.00 3.86
1230 1297 1.254026 AAGATGACCGTCCGAGAACA 58.746 50.000 0.00 0.00 0.00 3.18
1250 1319 2.434702 CAGGCTTCGAAGGTATAACCCT 59.565 50.000 25.77 17.88 39.75 4.34
1269 1338 4.002267 TCGATACGCTTTGAAAATGCAG 57.998 40.909 0.00 0.00 46.23 4.41
1331 1403 5.106038 ACATCTACGGAAATGAACGACTACA 60.106 40.000 0.00 0.00 0.00 2.74
1373 1445 2.357034 CCCCGTGGACGTCAAGTG 60.357 66.667 18.91 1.15 37.74 3.16
1448 1520 4.036262 TCATCAAGTTCACCTTCAAAACGG 59.964 41.667 0.00 0.00 0.00 4.44
1488 1561 2.318908 ACCCTTAGTACCACGACAACA 58.681 47.619 0.00 0.00 0.00 3.33
1537 1610 2.437359 AGACTACCGTCGACCCCG 60.437 66.667 10.58 0.00 44.93 5.73
1553 1627 0.733729 CTTCCTCCGAGTACCACGAG 59.266 60.000 10.85 3.26 0.00 4.18
1567 1641 1.471684 CCGCGAGTACAACTACTTCCT 59.528 52.381 8.23 0.00 32.96 3.36
1589 1707 4.447365 CGACTACCGTCACCGAAC 57.553 61.111 0.00 0.00 40.23 3.95
1610 1728 3.737047 CGCCAAGTACCTTGTCGATACAT 60.737 47.826 1.55 0.00 43.97 2.29
1661 1832 6.129179 CCCCTTCTACCATGTACAAAATCAT 58.871 40.000 0.00 0.00 0.00 2.45
1662 1833 5.014755 ACCCCTTCTACCATGTACAAAATCA 59.985 40.000 0.00 0.00 0.00 2.57
1727 1899 5.768980 ATCCCGAACCAAGATCATCATAT 57.231 39.130 0.00 0.00 0.00 1.78
1814 1988 2.550277 TCTGAGCTCCATCCTAACCA 57.450 50.000 12.15 0.00 0.00 3.67
1982 2214 2.238319 TACACCCTGCCCTCCTCGAT 62.238 60.000 0.00 0.00 0.00 3.59
2004 2236 2.933287 ACCGGCCTCCATGGTTCA 60.933 61.111 12.58 0.00 38.35 3.18
2178 2410 1.030488 CGCAGTCCTTCCTACTCCGA 61.030 60.000 0.00 0.00 29.49 4.55
2188 2420 2.665185 GTTGTCGCCGCAGTCCTT 60.665 61.111 0.00 0.00 0.00 3.36
2347 2579 4.864334 CCCTCCAGTGCCGCCATC 62.864 72.222 0.00 0.00 0.00 3.51
2355 2587 3.077556 CTCCCCGTCCCTCCAGTG 61.078 72.222 0.00 0.00 0.00 3.66
2356 2588 3.273654 TCTCCCCGTCCCTCCAGT 61.274 66.667 0.00 0.00 0.00 4.00
2357 2589 2.443016 CTCTCCCCGTCCCTCCAG 60.443 72.222 0.00 0.00 0.00 3.86
2358 2590 4.075793 CCTCTCCCCGTCCCTCCA 62.076 72.222 0.00 0.00 0.00 3.86
2359 2591 4.862823 CCCTCTCCCCGTCCCTCC 62.863 77.778 0.00 0.00 0.00 4.30
2360 2592 3.742248 CTCCCTCTCCCCGTCCCTC 62.742 73.684 0.00 0.00 0.00 4.30
2361 2593 3.756783 CTCCCTCTCCCCGTCCCT 61.757 72.222 0.00 0.00 0.00 4.20
2364 2596 4.816984 TCGCTCCCTCTCCCCGTC 62.817 72.222 0.00 0.00 0.00 4.79
2365 2597 4.144727 ATCGCTCCCTCTCCCCGT 62.145 66.667 0.00 0.00 0.00 5.28
2366 2598 3.610669 CATCGCTCCCTCTCCCCG 61.611 72.222 0.00 0.00 0.00 5.73
2367 2599 3.934962 GCATCGCTCCCTCTCCCC 61.935 72.222 0.00 0.00 0.00 4.81
2368 2600 4.292178 CGCATCGCTCCCTCTCCC 62.292 72.222 0.00 0.00 0.00 4.30
2369 2601 4.292178 CCGCATCGCTCCCTCTCC 62.292 72.222 0.00 0.00 0.00 3.71
2370 2602 4.959596 GCCGCATCGCTCCCTCTC 62.960 72.222 0.00 0.00 0.00 3.20
2380 2612 4.899239 CTCCCACTCCGCCGCATC 62.899 72.222 0.00 0.00 0.00 3.91
2386 2618 4.436998 CACGTCCTCCCACTCCGC 62.437 72.222 0.00 0.00 0.00 5.54
2387 2619 2.675423 TCACGTCCTCCCACTCCG 60.675 66.667 0.00 0.00 0.00 4.63
2388 2620 2.971452 GTCACGTCCTCCCACTCC 59.029 66.667 0.00 0.00 0.00 3.85
2389 2621 1.924320 CTCGTCACGTCCTCCCACTC 61.924 65.000 0.00 0.00 0.00 3.51
2390 2622 1.972223 CTCGTCACGTCCTCCCACT 60.972 63.158 0.00 0.00 0.00 4.00
2391 2623 2.567049 CTCGTCACGTCCTCCCAC 59.433 66.667 0.00 0.00 0.00 4.61
2392 2624 2.675423 CCTCGTCACGTCCTCCCA 60.675 66.667 0.00 0.00 0.00 4.37
2393 2625 3.450115 CCCTCGTCACGTCCTCCC 61.450 72.222 0.00 0.00 0.00 4.30
2394 2626 3.450115 CCCCTCGTCACGTCCTCC 61.450 72.222 0.00 0.00 0.00 4.30
2395 2627 4.131088 GCCCCTCGTCACGTCCTC 62.131 72.222 0.00 0.00 0.00 3.71
2396 2628 4.988716 TGCCCCTCGTCACGTCCT 62.989 66.667 0.00 0.00 0.00 3.85
2397 2629 3.771160 ATGCCCCTCGTCACGTCC 61.771 66.667 0.00 0.00 0.00 4.79
2398 2630 2.509336 CATGCCCCTCGTCACGTC 60.509 66.667 0.00 0.00 0.00 4.34
2399 2631 3.311110 ACATGCCCCTCGTCACGT 61.311 61.111 0.00 0.00 0.00 4.49
2400 2632 2.815211 CACATGCCCCTCGTCACG 60.815 66.667 0.00 0.00 0.00 4.35
2401 2633 2.034879 CACACATGCCCCTCGTCAC 61.035 63.158 0.00 0.00 0.00 3.67
2402 2634 2.347114 CACACATGCCCCTCGTCA 59.653 61.111 0.00 0.00 0.00 4.35
2403 2635 3.127533 GCACACATGCCCCTCGTC 61.128 66.667 0.00 0.00 46.97 4.20
2412 2644 3.656243 CTTCTGCGCCGCACACATG 62.656 63.158 8.16 0.00 33.79 3.21
2413 2645 3.425713 CTTCTGCGCCGCACACAT 61.426 61.111 8.16 0.00 33.79 3.21
2416 2648 4.617520 TTCCTTCTGCGCCGCACA 62.618 61.111 8.16 0.00 33.79 4.57
2417 2649 3.793144 CTTCCTTCTGCGCCGCAC 61.793 66.667 8.16 0.00 33.79 5.34
2419 2651 4.760047 TCCTTCCTTCTGCGCCGC 62.760 66.667 4.18 0.00 0.00 6.53
2420 2652 2.176273 CATCCTTCCTTCTGCGCCG 61.176 63.158 4.18 0.00 0.00 6.46
2421 2653 1.821332 CCATCCTTCCTTCTGCGCC 60.821 63.158 4.18 0.00 0.00 6.53
2422 2654 1.821332 CCCATCCTTCCTTCTGCGC 60.821 63.158 0.00 0.00 0.00 6.09
2423 2655 0.471617 ATCCCATCCTTCCTTCTGCG 59.528 55.000 0.00 0.00 0.00 5.18
2424 2656 1.542108 CGATCCCATCCTTCCTTCTGC 60.542 57.143 0.00 0.00 0.00 4.26
2425 2657 2.042464 TCGATCCCATCCTTCCTTCTG 58.958 52.381 0.00 0.00 0.00 3.02
2426 2658 2.478872 TCGATCCCATCCTTCCTTCT 57.521 50.000 0.00 0.00 0.00 2.85
2427 2659 3.669536 GAATCGATCCCATCCTTCCTTC 58.330 50.000 0.00 0.00 0.00 3.46
2428 2660 2.037772 CGAATCGATCCCATCCTTCCTT 59.962 50.000 0.00 0.00 0.00 3.36
2429 2661 1.620819 CGAATCGATCCCATCCTTCCT 59.379 52.381 0.00 0.00 0.00 3.36
2430 2662 1.338200 CCGAATCGATCCCATCCTTCC 60.338 57.143 3.36 0.00 0.00 3.46
2431 2663 1.344763 ACCGAATCGATCCCATCCTTC 59.655 52.381 3.36 0.00 0.00 3.46
2432 2664 1.344763 GACCGAATCGATCCCATCCTT 59.655 52.381 3.36 0.00 0.00 3.36
2433 2665 0.969894 GACCGAATCGATCCCATCCT 59.030 55.000 3.36 0.00 0.00 3.24
2434 2666 0.037232 GGACCGAATCGATCCCATCC 60.037 60.000 4.29 0.47 0.00 3.51
2435 2667 3.516578 GGACCGAATCGATCCCATC 57.483 57.895 4.29 0.00 0.00 3.51
2439 2671 0.315568 CAGAGGGACCGAATCGATCC 59.684 60.000 7.70 7.70 0.00 3.36
2440 2672 0.315568 CCAGAGGGACCGAATCGATC 59.684 60.000 3.36 0.00 35.59 3.69
2441 2673 0.397254 ACCAGAGGGACCGAATCGAT 60.397 55.000 3.36 0.00 38.05 3.59
2442 2674 1.000019 ACCAGAGGGACCGAATCGA 60.000 57.895 3.36 0.00 38.05 3.59
2443 2675 1.141881 CACCAGAGGGACCGAATCG 59.858 63.158 0.00 0.00 38.05 3.34
2444 2676 1.522569 CCACCAGAGGGACCGAATC 59.477 63.158 0.00 0.00 38.05 2.52
2445 2677 2.670148 GCCACCAGAGGGACCGAAT 61.670 63.158 0.00 0.00 38.05 3.34
2446 2678 3.319198 GCCACCAGAGGGACCGAA 61.319 66.667 0.00 0.00 38.05 4.30
2458 2690 4.489771 CATCTCCACCCCGCCACC 62.490 72.222 0.00 0.00 0.00 4.61
2459 2691 3.391665 CTCATCTCCACCCCGCCAC 62.392 68.421 0.00 0.00 0.00 5.01
2460 2692 3.083349 CTCATCTCCACCCCGCCA 61.083 66.667 0.00 0.00 0.00 5.69
2461 2693 3.866582 CCTCATCTCCACCCCGCC 61.867 72.222 0.00 0.00 0.00 6.13
2462 2694 3.866582 CCCTCATCTCCACCCCGC 61.867 72.222 0.00 0.00 0.00 6.13
2463 2695 1.271840 TTTCCCTCATCTCCACCCCG 61.272 60.000 0.00 0.00 0.00 5.73
2464 2696 0.548510 CTTTCCCTCATCTCCACCCC 59.451 60.000 0.00 0.00 0.00 4.95
2465 2697 0.548510 CCTTTCCCTCATCTCCACCC 59.451 60.000 0.00 0.00 0.00 4.61
2466 2698 0.548510 CCCTTTCCCTCATCTCCACC 59.451 60.000 0.00 0.00 0.00 4.61
2467 2699 1.488393 CTCCCTTTCCCTCATCTCCAC 59.512 57.143 0.00 0.00 0.00 4.02
2468 2700 1.366082 TCTCCCTTTCCCTCATCTCCA 59.634 52.381 0.00 0.00 0.00 3.86
2469 2701 2.046292 CTCTCCCTTTCCCTCATCTCC 58.954 57.143 0.00 0.00 0.00 3.71
2470 2702 3.039252 TCTCTCCCTTTCCCTCATCTC 57.961 52.381 0.00 0.00 0.00 2.75
2471 2703 3.586429 GATCTCTCCCTTTCCCTCATCT 58.414 50.000 0.00 0.00 0.00 2.90
2472 2704 2.298729 CGATCTCTCCCTTTCCCTCATC 59.701 54.545 0.00 0.00 0.00 2.92
2473 2705 2.091055 TCGATCTCTCCCTTTCCCTCAT 60.091 50.000 0.00 0.00 0.00 2.90
2474 2706 1.288037 TCGATCTCTCCCTTTCCCTCA 59.712 52.381 0.00 0.00 0.00 3.86
2475 2707 2.074729 TCGATCTCTCCCTTTCCCTC 57.925 55.000 0.00 0.00 0.00 4.30
2476 2708 2.604139 GATCGATCTCTCCCTTTCCCT 58.396 52.381 18.29 0.00 0.00 4.20
2477 2709 1.271102 CGATCGATCTCTCCCTTTCCC 59.729 57.143 22.43 0.00 0.00 3.97
2478 2710 1.271102 CCGATCGATCTCTCCCTTTCC 59.729 57.143 22.43 0.00 0.00 3.13
2479 2711 1.271102 CCCGATCGATCTCTCCCTTTC 59.729 57.143 22.43 0.00 0.00 2.62
2480 2712 1.133450 TCCCGATCGATCTCTCCCTTT 60.133 52.381 22.43 0.00 0.00 3.11
2481 2713 0.478942 TCCCGATCGATCTCTCCCTT 59.521 55.000 22.43 0.00 0.00 3.95
2482 2714 0.037590 CTCCCGATCGATCTCTCCCT 59.962 60.000 22.43 0.00 0.00 4.20
2483 2715 0.037017 TCTCCCGATCGATCTCTCCC 59.963 60.000 22.43 0.00 0.00 4.30
2484 2716 1.742831 CATCTCCCGATCGATCTCTCC 59.257 57.143 22.43 0.00 0.00 3.71
2485 2717 2.677836 CTCATCTCCCGATCGATCTCTC 59.322 54.545 22.43 0.00 0.00 3.20
2486 2718 2.617788 CCTCATCTCCCGATCGATCTCT 60.618 54.545 22.43 0.00 0.00 3.10
2487 2719 1.742831 CCTCATCTCCCGATCGATCTC 59.257 57.143 22.43 0.00 0.00 2.75
2488 2720 1.615651 CCCTCATCTCCCGATCGATCT 60.616 57.143 22.43 0.09 0.00 2.75
2489 2721 0.814457 CCCTCATCTCCCGATCGATC 59.186 60.000 18.66 15.68 0.00 3.69
2490 2722 0.113385 ACCCTCATCTCCCGATCGAT 59.887 55.000 18.66 0.00 0.00 3.59
2491 2723 0.106167 AACCCTCATCTCCCGATCGA 60.106 55.000 18.66 0.00 0.00 3.59
2492 2724 1.542030 CTAACCCTCATCTCCCGATCG 59.458 57.143 8.51 8.51 0.00 3.69
2493 2725 1.896465 CCTAACCCTCATCTCCCGATC 59.104 57.143 0.00 0.00 0.00 3.69
2494 2726 1.220750 ACCTAACCCTCATCTCCCGAT 59.779 52.381 0.00 0.00 0.00 4.18
2495 2727 0.635009 ACCTAACCCTCATCTCCCGA 59.365 55.000 0.00 0.00 0.00 5.14
2496 2728 1.497161 AACCTAACCCTCATCTCCCG 58.503 55.000 0.00 0.00 0.00 5.14
2497 2729 2.973406 CCTAACCTAACCCTCATCTCCC 59.027 54.545 0.00 0.00 0.00 4.30
2498 2730 3.924922 TCCTAACCTAACCCTCATCTCC 58.075 50.000 0.00 0.00 0.00 3.71
2499 2731 4.284746 CCATCCTAACCTAACCCTCATCTC 59.715 50.000 0.00 0.00 0.00 2.75
2500 2732 4.077982 TCCATCCTAACCTAACCCTCATCT 60.078 45.833 0.00 0.00 0.00 2.90
2501 2733 4.232091 TCCATCCTAACCTAACCCTCATC 58.768 47.826 0.00 0.00 0.00 2.92
2502 2734 4.295905 TCCATCCTAACCTAACCCTCAT 57.704 45.455 0.00 0.00 0.00 2.90
2503 2735 3.788116 TCCATCCTAACCTAACCCTCA 57.212 47.619 0.00 0.00 0.00 3.86
2504 2736 3.258622 CGATCCATCCTAACCTAACCCTC 59.741 52.174 0.00 0.00 0.00 4.30
2505 2737 3.240302 CGATCCATCCTAACCTAACCCT 58.760 50.000 0.00 0.00 0.00 4.34
2506 2738 2.302157 CCGATCCATCCTAACCTAACCC 59.698 54.545 0.00 0.00 0.00 4.11
2507 2739 2.302157 CCCGATCCATCCTAACCTAACC 59.698 54.545 0.00 0.00 0.00 2.85
2508 2740 2.289506 GCCCGATCCATCCTAACCTAAC 60.290 54.545 0.00 0.00 0.00 2.34
2509 2741 1.975680 GCCCGATCCATCCTAACCTAA 59.024 52.381 0.00 0.00 0.00 2.69
2510 2742 1.132977 TGCCCGATCCATCCTAACCTA 60.133 52.381 0.00 0.00 0.00 3.08
2511 2743 0.399949 TGCCCGATCCATCCTAACCT 60.400 55.000 0.00 0.00 0.00 3.50
2512 2744 0.250338 GTGCCCGATCCATCCTAACC 60.250 60.000 0.00 0.00 0.00 2.85
2513 2745 0.600255 CGTGCCCGATCCATCCTAAC 60.600 60.000 0.00 0.00 35.63 2.34
2514 2746 1.745890 CGTGCCCGATCCATCCTAA 59.254 57.895 0.00 0.00 35.63 2.69
2515 2747 2.207229 CCGTGCCCGATCCATCCTA 61.207 63.158 0.00 0.00 35.63 2.94
2516 2748 3.550431 CCGTGCCCGATCCATCCT 61.550 66.667 0.00 0.00 35.63 3.24
2518 2750 4.241555 AGCCGTGCCCGATCCATC 62.242 66.667 0.00 0.00 35.63 3.51
2519 2751 4.552365 CAGCCGTGCCCGATCCAT 62.552 66.667 0.00 0.00 35.63 3.41
2562 2794 4.031129 ACTCAGGCCCAGCAGCAG 62.031 66.667 0.00 0.00 0.00 4.24
2563 2795 4.340246 CACTCAGGCCCAGCAGCA 62.340 66.667 0.00 0.00 0.00 4.41
2588 2820 1.529309 CCTCTTGGGCCTCCTTAGC 59.471 63.158 4.53 0.00 0.00 3.09
2598 2830 1.000521 TCAAGCCATGCCTCTTGGG 60.001 57.895 15.72 0.00 39.92 4.12
2599 2831 1.318158 GGTCAAGCCATGCCTCTTGG 61.318 60.000 15.72 0.00 39.92 3.61
2600 2832 1.318158 GGGTCAAGCCATGCCTCTTG 61.318 60.000 11.86 11.86 40.62 3.02
2601 2833 1.000396 GGGTCAAGCCATGCCTCTT 60.000 57.895 0.00 0.00 39.65 2.85
2602 2834 1.504275 AAGGGTCAAGCCATGCCTCT 61.504 55.000 0.44 0.00 39.65 3.69
2603 2835 0.613012 AAAGGGTCAAGCCATGCCTC 60.613 55.000 0.44 0.00 39.65 4.70
2604 2836 0.613012 GAAAGGGTCAAGCCATGCCT 60.613 55.000 0.44 0.00 39.65 4.75
2605 2837 0.613012 AGAAAGGGTCAAGCCATGCC 60.613 55.000 0.44 0.00 39.65 4.40
2606 2838 0.529378 CAGAAAGGGTCAAGCCATGC 59.471 55.000 0.44 0.00 39.65 4.06
2607 2839 1.815003 GACAGAAAGGGTCAAGCCATG 59.185 52.381 0.44 0.00 39.65 3.66
2608 2840 1.707427 AGACAGAAAGGGTCAAGCCAT 59.293 47.619 0.44 0.00 39.65 4.40
2609 2841 1.072331 GAGACAGAAAGGGTCAAGCCA 59.928 52.381 0.44 0.00 39.65 4.75
2610 2842 1.611936 GGAGACAGAAAGGGTCAAGCC 60.612 57.143 0.00 0.00 37.74 4.35
2611 2843 1.611936 GGGAGACAGAAAGGGTCAAGC 60.612 57.143 0.00 0.00 37.74 4.01
2612 2844 1.981495 AGGGAGACAGAAAGGGTCAAG 59.019 52.381 0.00 0.00 37.74 3.02
2613 2845 2.118403 AGGGAGACAGAAAGGGTCAA 57.882 50.000 0.00 0.00 37.74 3.18
2614 2846 1.978580 GAAGGGAGACAGAAAGGGTCA 59.021 52.381 0.00 0.00 37.74 4.02
2615 2847 2.261729 AGAAGGGAGACAGAAAGGGTC 58.738 52.381 0.00 0.00 35.50 4.46
2616 2848 2.424684 AGAAGGGAGACAGAAAGGGT 57.575 50.000 0.00 0.00 0.00 4.34
2617 2849 5.443230 AATTAGAAGGGAGACAGAAAGGG 57.557 43.478 0.00 0.00 0.00 3.95
2618 2850 5.124617 GCAAATTAGAAGGGAGACAGAAAGG 59.875 44.000 0.00 0.00 0.00 3.11
2619 2851 5.942826 AGCAAATTAGAAGGGAGACAGAAAG 59.057 40.000 0.00 0.00 0.00 2.62
2620 2852 5.880901 AGCAAATTAGAAGGGAGACAGAAA 58.119 37.500 0.00 0.00 0.00 2.52
2621 2853 5.505181 AGCAAATTAGAAGGGAGACAGAA 57.495 39.130 0.00 0.00 0.00 3.02
2622 2854 5.505181 AAGCAAATTAGAAGGGAGACAGA 57.495 39.130 0.00 0.00 0.00 3.41
2623 2855 7.174946 TGTTAAAGCAAATTAGAAGGGAGACAG 59.825 37.037 0.00 0.00 0.00 3.51
2624 2856 7.001674 TGTTAAAGCAAATTAGAAGGGAGACA 58.998 34.615 0.00 0.00 0.00 3.41
2625 2857 7.390718 TCTGTTAAAGCAAATTAGAAGGGAGAC 59.609 37.037 0.00 0.00 0.00 3.36
2626 2858 7.458397 TCTGTTAAAGCAAATTAGAAGGGAGA 58.542 34.615 0.00 0.00 0.00 3.71
2627 2859 7.687941 TCTGTTAAAGCAAATTAGAAGGGAG 57.312 36.000 0.00 0.00 0.00 4.30
2628 2860 8.472007 TTTCTGTTAAAGCAAATTAGAAGGGA 57.528 30.769 0.00 0.00 0.00 4.20
2629 2861 9.541143 TTTTTCTGTTAAAGCAAATTAGAAGGG 57.459 29.630 0.00 0.00 0.00 3.95
2638 2870 9.567848 CTCTAACTGTTTTTCTGTTAAAGCAAA 57.432 29.630 0.00 0.00 39.00 3.68
2639 2871 8.952278 TCTCTAACTGTTTTTCTGTTAAAGCAA 58.048 29.630 0.00 0.00 39.00 3.91
2640 2872 8.500753 TCTCTAACTGTTTTTCTGTTAAAGCA 57.499 30.769 0.00 0.00 39.00 3.91
2641 2873 8.070769 CCTCTCTAACTGTTTTTCTGTTAAAGC 58.929 37.037 0.00 0.00 39.00 3.51
2642 2874 9.326413 TCCTCTCTAACTGTTTTTCTGTTAAAG 57.674 33.333 0.00 0.00 39.00 1.85
2643 2875 9.326413 CTCCTCTCTAACTGTTTTTCTGTTAAA 57.674 33.333 0.00 0.00 39.00 1.52
2644 2876 8.701895 TCTCCTCTCTAACTGTTTTTCTGTTAA 58.298 33.333 0.00 0.00 39.00 2.01
2645 2877 8.246430 TCTCCTCTCTAACTGTTTTTCTGTTA 57.754 34.615 0.00 0.00 38.70 2.41
2646 2878 7.125792 TCTCCTCTCTAACTGTTTTTCTGTT 57.874 36.000 0.00 0.00 40.39 3.16
2647 2879 6.732896 TCTCCTCTCTAACTGTTTTTCTGT 57.267 37.500 0.00 0.00 0.00 3.41
2648 2880 8.438676 TTTTCTCCTCTCTAACTGTTTTTCTG 57.561 34.615 0.00 0.00 0.00 3.02
2649 2881 9.114952 CTTTTTCTCCTCTCTAACTGTTTTTCT 57.885 33.333 0.00 0.00 0.00 2.52
2650 2882 9.110502 TCTTTTTCTCCTCTCTAACTGTTTTTC 57.889 33.333 0.00 0.00 0.00 2.29
2651 2883 9.462606 TTCTTTTTCTCCTCTCTAACTGTTTTT 57.537 29.630 0.00 0.00 0.00 1.94
2652 2884 9.462606 TTTCTTTTTCTCCTCTCTAACTGTTTT 57.537 29.630 0.00 0.00 0.00 2.43
2653 2885 9.114952 CTTTCTTTTTCTCCTCTCTAACTGTTT 57.885 33.333 0.00 0.00 0.00 2.83
2654 2886 8.487028 TCTTTCTTTTTCTCCTCTCTAACTGTT 58.513 33.333 0.00 0.00 0.00 3.16
2655 2887 8.024145 TCTTTCTTTTTCTCCTCTCTAACTGT 57.976 34.615 0.00 0.00 0.00 3.55
2656 2888 8.364142 TCTCTTTCTTTTTCTCCTCTCTAACTG 58.636 37.037 0.00 0.00 0.00 3.16
2657 2889 8.485578 TCTCTTTCTTTTTCTCCTCTCTAACT 57.514 34.615 0.00 0.00 0.00 2.24
2658 2890 7.817478 CCTCTCTTTCTTTTTCTCCTCTCTAAC 59.183 40.741 0.00 0.00 0.00 2.34
2659 2891 7.038658 CCCTCTCTTTCTTTTTCTCCTCTCTAA 60.039 40.741 0.00 0.00 0.00 2.10
2660 2892 6.439058 CCCTCTCTTTCTTTTTCTCCTCTCTA 59.561 42.308 0.00 0.00 0.00 2.43
2661 2893 5.248248 CCCTCTCTTTCTTTTTCTCCTCTCT 59.752 44.000 0.00 0.00 0.00 3.10
2662 2894 5.012664 ACCCTCTCTTTCTTTTTCTCCTCTC 59.987 44.000 0.00 0.00 0.00 3.20
2663 2895 4.910913 ACCCTCTCTTTCTTTTTCTCCTCT 59.089 41.667 0.00 0.00 0.00 3.69
2664 2896 5.235850 ACCCTCTCTTTCTTTTTCTCCTC 57.764 43.478 0.00 0.00 0.00 3.71
2665 2897 5.654901 AACCCTCTCTTTCTTTTTCTCCT 57.345 39.130 0.00 0.00 0.00 3.69
2666 2898 5.941058 CCTAACCCTCTCTTTCTTTTTCTCC 59.059 44.000 0.00 0.00 0.00 3.71
2667 2899 5.941058 CCCTAACCCTCTCTTTCTTTTTCTC 59.059 44.000 0.00 0.00 0.00 2.87
2668 2900 5.611408 TCCCTAACCCTCTCTTTCTTTTTCT 59.389 40.000 0.00 0.00 0.00 2.52
2669 2901 5.877491 TCCCTAACCCTCTCTTTCTTTTTC 58.123 41.667 0.00 0.00 0.00 2.29
2670 2902 5.924769 TCCCTAACCCTCTCTTTCTTTTT 57.075 39.130 0.00 0.00 0.00 1.94
2671 2903 5.924769 TTCCCTAACCCTCTCTTTCTTTT 57.075 39.130 0.00 0.00 0.00 2.27
2672 2904 5.611408 TCTTTCCCTAACCCTCTCTTTCTTT 59.389 40.000 0.00 0.00 0.00 2.52
2673 2905 5.163390 TCTTTCCCTAACCCTCTCTTTCTT 58.837 41.667 0.00 0.00 0.00 2.52
2674 2906 4.764491 TCTTTCCCTAACCCTCTCTTTCT 58.236 43.478 0.00 0.00 0.00 2.52
2682 2914 7.525158 TCTGAAATATTCTTTCCCTAACCCT 57.475 36.000 0.00 0.00 0.00 4.34
2727 2959 3.745799 TCTATTTGTGCAAAGTTCCGGA 58.254 40.909 0.00 0.00 33.32 5.14
2856 3090 2.237392 ACTACACCCTCTCTGCCAAATC 59.763 50.000 0.00 0.00 0.00 2.17
2916 3150 4.568956 GCAAGTGGCATTATTTTGTTCCT 58.431 39.130 0.00 0.00 43.97 3.36
2995 3236 0.922626 GATCTTTCCTCCAAGGCCCT 59.077 55.000 0.00 0.00 34.61 5.19
3257 3517 8.188531 AGTTTCATTGTGTGATTTGTTTTCTG 57.811 30.769 0.00 0.00 36.54 3.02
3259 3519 8.183830 TGAGTTTCATTGTGTGATTTGTTTTC 57.816 30.769 0.00 0.00 36.54 2.29
3284 3546 1.005215 CAGATGCCTTCCAGGGTTTCT 59.995 52.381 0.00 0.00 35.37 2.52
3307 3569 2.526873 ACGCCCCAAGACCAGAGT 60.527 61.111 0.00 0.00 0.00 3.24
3311 3573 2.747443 TTGTGACGCCCCAAGACCA 61.747 57.895 0.00 0.00 0.00 4.02
3390 3652 7.630728 GCAACTTTGTTTTACCTCTTCCTCTTT 60.631 37.037 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.