Multiple sequence alignment - TraesCS2A01G246500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G246500 chr2A 100.000 4260 0 0 1 4260 360825767 360830026 0.000000e+00 7867.0
1 TraesCS2A01G246500 chr2A 96.744 3071 93 6 812 3877 514348792 514351860 0.000000e+00 5110.0
2 TraesCS2A01G246500 chr2A 93.586 1372 77 9 807 2174 395267148 395265784 0.000000e+00 2036.0
3 TraesCS2A01G246500 chr2A 93.450 1374 77 10 807 2174 405891154 405892520 0.000000e+00 2026.0
4 TraesCS2A01G246500 chr2A 94.068 1315 64 10 2569 3876 395265784 395264477 0.000000e+00 1984.0
5 TraesCS2A01G246500 chr2A 92.653 803 57 2 1 802 174299444 174300245 0.000000e+00 1155.0
6 TraesCS2A01G246500 chr2A 91.483 317 18 2 2289 2605 777014107 777014414 1.090000e-115 427.0
7 TraesCS2A01G246500 chr2A 85.526 76 9 2 3612 3687 777015784 777015711 1.270000e-10 78.7
8 TraesCS2A01G246500 chr7B 92.485 2515 140 27 807 3310 376400817 376398341 0.000000e+00 3552.0
9 TraesCS2A01G246500 chr7B 91.220 410 23 4 3468 3877 376398345 376397949 2.900000e-151 545.0
10 TraesCS2A01G246500 chr7B 85.088 114 15 2 803 915 717275465 717275353 9.680000e-22 115.0
11 TraesCS2A01G246500 chr1A 92.090 2086 143 13 1801 3877 249235027 249237099 0.000000e+00 2918.0
12 TraesCS2A01G246500 chr1A 91.515 931 64 7 807 1733 249234115 249235034 0.000000e+00 1267.0
13 TraesCS2A01G246500 chr3D 93.045 1596 77 11 2289 3876 429608449 429610018 0.000000e+00 2302.0
14 TraesCS2A01G246500 chr3D 92.727 1595 83 10 2289 3876 489594523 489596091 0.000000e+00 2272.0
15 TraesCS2A01G246500 chr3D 92.528 803 58 2 1 802 322347352 322346551 0.000000e+00 1149.0
16 TraesCS2A01G246500 chr3D 95.116 389 18 1 3873 4260 477442904 477442516 2.820000e-171 612.0
17 TraesCS2A01G246500 chr6A 92.688 1600 83 16 2289 3879 35314841 35313267 0.000000e+00 2276.0
18 TraesCS2A01G246500 chr6A 95.078 386 17 2 3877 4260 155881385 155881000 1.310000e-169 606.0
19 TraesCS2A01G246500 chr3B 92.683 1599 82 16 2289 3880 373192576 373194146 0.000000e+00 2272.0
20 TraesCS2A01G246500 chr3B 76.839 367 60 19 807 1165 770125632 770125981 2.620000e-42 183.0
21 TraesCS2A01G246500 chr2D 92.669 1596 84 11 2289 3877 607746058 607744489 0.000000e+00 2268.0
22 TraesCS2A01G246500 chr2D 92.403 803 57 4 1 802 435997437 435998236 0.000000e+00 1142.0
23 TraesCS2A01G246500 chr2D 92.289 804 58 4 1 802 614447321 614448122 0.000000e+00 1138.0
24 TraesCS2A01G246500 chr6D 92.495 1599 86 12 2289 3879 148847257 148845685 0.000000e+00 2257.0
25 TraesCS2A01G246500 chr6D 92.231 1596 89 14 2289 3876 385337442 385339010 0.000000e+00 2228.0
26 TraesCS2A01G246500 chr6D 91.917 1596 95 14 2289 3876 329379946 329381515 0.000000e+00 2202.0
27 TraesCS2A01G246500 chr6D 89.062 64 6 1 807 869 463721643 463721706 1.270000e-10 78.7
28 TraesCS2A01G246500 chr2B 92.544 1596 84 12 2289 3877 705902047 705900480 0.000000e+00 2255.0
29 TraesCS2A01G246500 chr2B 95.116 389 17 2 3874 4260 125116361 125116749 2.820000e-171 612.0
30 TraesCS2A01G246500 chr5D 92.476 1595 87 10 2289 3877 468506146 468507713 0.000000e+00 2250.0
31 TraesCS2A01G246500 chr5D 95.103 388 18 1 3874 4260 303955168 303955555 1.010000e-170 610.0
32 TraesCS2A01G246500 chr7D 91.855 1596 84 14 2289 3876 1787342 1788899 0.000000e+00 2185.0
33 TraesCS2A01G246500 chr7D 91.750 1600 85 11 2289 3880 285354450 285352890 0.000000e+00 2180.0
34 TraesCS2A01G246500 chr7D 92.413 804 58 3 1 802 385015114 385014312 0.000000e+00 1144.0
35 TraesCS2A01G246500 chr7D 92.289 804 58 4 1 802 273766479 273767280 0.000000e+00 1138.0
36 TraesCS2A01G246500 chr7D 95.361 388 17 1 3874 4260 217318586 217318973 2.180000e-172 616.0
37 TraesCS2A01G246500 chr3A 92.385 801 60 1 3 802 250014834 250015634 0.000000e+00 1140.0
38 TraesCS2A01G246500 chr4A 92.279 803 61 1 1 802 641115940 641115138 0.000000e+00 1138.0
39 TraesCS2A01G246500 chr1D 92.298 805 56 6 1 802 423174184 423173383 0.000000e+00 1138.0
40 TraesCS2A01G246500 chr1D 95.325 385 17 1 3877 4260 304346819 304346435 1.010000e-170 610.0
41 TraesCS2A01G246500 chr4D 95.103 388 18 1 3874 4260 363539716 363540103 1.010000e-170 610.0
42 TraesCS2A01G246500 chr4D 94.845 388 19 1 3874 4260 11811308 11810921 4.710000e-169 604.0
43 TraesCS2A01G246500 chr4D 94.845 388 19 1 3874 4260 416665147 416665534 4.710000e-169 604.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G246500 chr2A 360825767 360830026 4259 False 7867.0 7867 100.0000 1 4260 1 chr2A.!!$F2 4259
1 TraesCS2A01G246500 chr2A 514348792 514351860 3068 False 5110.0 5110 96.7440 812 3877 1 chr2A.!!$F4 3065
2 TraesCS2A01G246500 chr2A 405891154 405892520 1366 False 2026.0 2026 93.4500 807 2174 1 chr2A.!!$F3 1367
3 TraesCS2A01G246500 chr2A 395264477 395267148 2671 True 2010.0 2036 93.8270 807 3876 2 chr2A.!!$R2 3069
4 TraesCS2A01G246500 chr2A 174299444 174300245 801 False 1155.0 1155 92.6530 1 802 1 chr2A.!!$F1 801
5 TraesCS2A01G246500 chr7B 376397949 376400817 2868 True 2048.5 3552 91.8525 807 3877 2 chr7B.!!$R2 3070
6 TraesCS2A01G246500 chr1A 249234115 249237099 2984 False 2092.5 2918 91.8025 807 3877 2 chr1A.!!$F1 3070
7 TraesCS2A01G246500 chr3D 429608449 429610018 1569 False 2302.0 2302 93.0450 2289 3876 1 chr3D.!!$F1 1587
8 TraesCS2A01G246500 chr3D 489594523 489596091 1568 False 2272.0 2272 92.7270 2289 3876 1 chr3D.!!$F2 1587
9 TraesCS2A01G246500 chr3D 322346551 322347352 801 True 1149.0 1149 92.5280 1 802 1 chr3D.!!$R1 801
10 TraesCS2A01G246500 chr6A 35313267 35314841 1574 True 2276.0 2276 92.6880 2289 3879 1 chr6A.!!$R1 1590
11 TraesCS2A01G246500 chr3B 373192576 373194146 1570 False 2272.0 2272 92.6830 2289 3880 1 chr3B.!!$F1 1591
12 TraesCS2A01G246500 chr2D 607744489 607746058 1569 True 2268.0 2268 92.6690 2289 3877 1 chr2D.!!$R1 1588
13 TraesCS2A01G246500 chr2D 435997437 435998236 799 False 1142.0 1142 92.4030 1 802 1 chr2D.!!$F1 801
14 TraesCS2A01G246500 chr2D 614447321 614448122 801 False 1138.0 1138 92.2890 1 802 1 chr2D.!!$F2 801
15 TraesCS2A01G246500 chr6D 148845685 148847257 1572 True 2257.0 2257 92.4950 2289 3879 1 chr6D.!!$R1 1590
16 TraesCS2A01G246500 chr6D 385337442 385339010 1568 False 2228.0 2228 92.2310 2289 3876 1 chr6D.!!$F2 1587
17 TraesCS2A01G246500 chr6D 329379946 329381515 1569 False 2202.0 2202 91.9170 2289 3876 1 chr6D.!!$F1 1587
18 TraesCS2A01G246500 chr2B 705900480 705902047 1567 True 2255.0 2255 92.5440 2289 3877 1 chr2B.!!$R1 1588
19 TraesCS2A01G246500 chr5D 468506146 468507713 1567 False 2250.0 2250 92.4760 2289 3877 1 chr5D.!!$F2 1588
20 TraesCS2A01G246500 chr7D 1787342 1788899 1557 False 2185.0 2185 91.8550 2289 3876 1 chr7D.!!$F1 1587
21 TraesCS2A01G246500 chr7D 285352890 285354450 1560 True 2180.0 2180 91.7500 2289 3880 1 chr7D.!!$R1 1591
22 TraesCS2A01G246500 chr7D 385014312 385015114 802 True 1144.0 1144 92.4130 1 802 1 chr7D.!!$R2 801
23 TraesCS2A01G246500 chr7D 273766479 273767280 801 False 1138.0 1138 92.2890 1 802 1 chr7D.!!$F3 801
24 TraesCS2A01G246500 chr3A 250014834 250015634 800 False 1140.0 1140 92.3850 3 802 1 chr3A.!!$F1 799
25 TraesCS2A01G246500 chr4A 641115138 641115940 802 True 1138.0 1138 92.2790 1 802 1 chr4A.!!$R1 801
26 TraesCS2A01G246500 chr1D 423173383 423174184 801 True 1138.0 1138 92.2980 1 802 1 chr1D.!!$R2 801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
684 686 0.474184 CCGGTAGGCATCCCATCTTT 59.526 55.000 0.00 0.00 0.00 2.52 F
839 842 0.748450 ATTAGGCGTACGCTTAGGCA 59.252 50.000 36.24 20.52 40.28 4.75 F
940 943 1.016627 TAACGCGTACGCCTAGATGT 58.983 50.000 32.64 20.89 45.53 3.06 F
1328 1331 2.091541 GCGATTTCATTTGTCCCTCCA 58.908 47.619 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 2233 0.308684 CTGATGCGCACAACACAGTT 59.691 50.000 14.9 0.0 0.00 3.16 R
2469 2488 2.295909 GCTCGATACAGATCCAGAAGCT 59.704 50.000 0.0 0.0 0.00 3.74 R
2974 3176 4.378874 GCATTCTCTTCCTGCAACACTAAC 60.379 45.833 0.0 0.0 35.96 2.34 R
3315 3517 0.040958 CTTGTGTGGCTCAACGCTTC 60.041 55.000 0.0 0.0 39.13 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.616260 GCTTGGAGCGTCATTTTATTTTGTTG 60.616 38.462 0.00 0.00 0.00 3.33
50 51 9.129532 TCATTTTATTTTGTTGGGATTTGCTTT 57.870 25.926 0.00 0.00 0.00 3.51
191 192 7.042119 CGTTGTTGCAAAAATTCCCTAGAAAAT 60.042 33.333 5.11 0.00 35.09 1.82
256 258 9.151471 GCTCTGATAAATTTTCTACAGTGTGTA 57.849 33.333 5.88 0.00 0.00 2.90
349 351 3.365820 GCAGATTGCTGTTATGTTTGCAC 59.634 43.478 0.00 0.00 44.17 4.57
411 413 9.326489 TGAGGATAGGAGTATTAAATATGCAGT 57.674 33.333 0.00 0.00 0.00 4.40
414 416 8.540388 GGATAGGAGTATTAAATATGCAGTGGA 58.460 37.037 0.00 0.00 0.00 4.02
469 471 3.943381 TGATTTGCTGCAGTAGAGAATGG 59.057 43.478 16.64 0.00 0.00 3.16
498 500 8.643324 AGGTTTTTGCATTGGTTTATACTAACA 58.357 29.630 0.00 0.00 0.00 2.41
552 554 5.653769 TGGATGAAGCTTTTGAGATTTAGGG 59.346 40.000 0.00 0.00 0.00 3.53
589 591 8.383318 TGAGAAGAATTAAGGAGACACAAAAG 57.617 34.615 0.00 0.00 0.00 2.27
590 592 8.210946 TGAGAAGAATTAAGGAGACACAAAAGA 58.789 33.333 0.00 0.00 0.00 2.52
606 608 3.744940 AAAGATCAAGCTTGGGGATGA 57.255 42.857 25.73 6.28 0.00 2.92
615 617 2.095270 TTGGGGATGACCAAGGCAT 58.905 52.632 0.00 0.00 45.19 4.40
634 636 7.771927 AGGCATCCCAAGATAATATTTCAAG 57.228 36.000 0.00 0.00 0.00 3.02
655 657 8.011844 TCAAGAAGTATCAAGCATCTAAGCTA 57.988 34.615 0.00 0.00 45.89 3.32
680 682 2.854032 CCCCGGTAGGCATCCCAT 60.854 66.667 0.00 0.00 35.76 4.00
681 683 2.750350 CCCGGTAGGCATCCCATC 59.250 66.667 0.00 0.00 35.76 3.51
682 684 1.843376 CCCGGTAGGCATCCCATCT 60.843 63.158 0.00 0.00 35.76 2.90
683 685 1.418908 CCCGGTAGGCATCCCATCTT 61.419 60.000 0.00 0.00 35.76 2.40
684 686 0.474184 CCGGTAGGCATCCCATCTTT 59.526 55.000 0.00 0.00 0.00 2.52
685 687 1.543429 CCGGTAGGCATCCCATCTTTC 60.543 57.143 0.00 0.00 0.00 2.62
686 688 1.417890 CGGTAGGCATCCCATCTTTCT 59.582 52.381 0.00 0.00 0.00 2.52
687 689 2.158755 CGGTAGGCATCCCATCTTTCTT 60.159 50.000 0.00 0.00 0.00 2.52
688 690 3.481453 GGTAGGCATCCCATCTTTCTTC 58.519 50.000 0.00 0.00 0.00 2.87
689 691 3.137360 GGTAGGCATCCCATCTTTCTTCT 59.863 47.826 0.00 0.00 0.00 2.85
690 692 4.385754 GGTAGGCATCCCATCTTTCTTCTT 60.386 45.833 0.00 0.00 0.00 2.52
691 693 3.895998 AGGCATCCCATCTTTCTTCTTC 58.104 45.455 0.00 0.00 0.00 2.87
692 694 3.267812 AGGCATCCCATCTTTCTTCTTCA 59.732 43.478 0.00 0.00 0.00 3.02
693 695 4.019174 GGCATCCCATCTTTCTTCTTCAA 58.981 43.478 0.00 0.00 0.00 2.69
694 696 4.648307 GGCATCCCATCTTTCTTCTTCAAT 59.352 41.667 0.00 0.00 0.00 2.57
695 697 5.829924 GGCATCCCATCTTTCTTCTTCAATA 59.170 40.000 0.00 0.00 0.00 1.90
696 698 6.322201 GGCATCCCATCTTTCTTCTTCAATAA 59.678 38.462 0.00 0.00 0.00 1.40
697 699 7.015001 GGCATCCCATCTTTCTTCTTCAATAAT 59.985 37.037 0.00 0.00 0.00 1.28
698 700 8.419442 GCATCCCATCTTTCTTCTTCAATAATT 58.581 33.333 0.00 0.00 0.00 1.40
719 721 7.948278 AATTATCAGTTAGTATCGGTTGAGC 57.052 36.000 0.00 0.00 0.00 4.26
720 722 3.795623 TCAGTTAGTATCGGTTGAGCC 57.204 47.619 0.00 0.00 0.00 4.70
721 723 3.362706 TCAGTTAGTATCGGTTGAGCCT 58.637 45.455 0.00 0.00 34.25 4.58
722 724 4.529897 TCAGTTAGTATCGGTTGAGCCTA 58.470 43.478 0.00 0.00 34.25 3.93
723 725 4.951715 TCAGTTAGTATCGGTTGAGCCTAA 59.048 41.667 0.00 0.00 34.25 2.69
724 726 5.067413 TCAGTTAGTATCGGTTGAGCCTAAG 59.933 44.000 0.00 0.00 34.25 2.18
725 727 4.954826 AGTTAGTATCGGTTGAGCCTAAGT 59.045 41.667 0.00 0.00 34.25 2.24
726 728 5.421374 AGTTAGTATCGGTTGAGCCTAAGTT 59.579 40.000 0.00 0.00 34.25 2.66
727 729 4.820894 AGTATCGGTTGAGCCTAAGTTT 57.179 40.909 0.00 0.00 34.25 2.66
728 730 5.161943 AGTATCGGTTGAGCCTAAGTTTT 57.838 39.130 0.00 0.00 34.25 2.43
729 731 5.557866 AGTATCGGTTGAGCCTAAGTTTTT 58.442 37.500 0.00 0.00 34.25 1.94
730 732 4.766404 ATCGGTTGAGCCTAAGTTTTTG 57.234 40.909 0.00 0.00 34.25 2.44
731 733 3.811083 TCGGTTGAGCCTAAGTTTTTGA 58.189 40.909 0.00 0.00 34.25 2.69
732 734 4.394729 TCGGTTGAGCCTAAGTTTTTGAT 58.605 39.130 0.00 0.00 34.25 2.57
733 735 4.825085 TCGGTTGAGCCTAAGTTTTTGATT 59.175 37.500 0.00 0.00 34.25 2.57
734 736 5.048991 TCGGTTGAGCCTAAGTTTTTGATTC 60.049 40.000 0.00 0.00 34.25 2.52
735 737 5.048713 CGGTTGAGCCTAAGTTTTTGATTCT 60.049 40.000 0.00 0.00 34.25 2.40
736 738 6.515035 CGGTTGAGCCTAAGTTTTTGATTCTT 60.515 38.462 0.00 0.00 34.25 2.52
737 739 6.863645 GGTTGAGCCTAAGTTTTTGATTCTTC 59.136 38.462 0.00 0.00 0.00 2.87
738 740 7.425606 GTTGAGCCTAAGTTTTTGATTCTTCA 58.574 34.615 0.00 0.00 0.00 3.02
739 741 6.970484 TGAGCCTAAGTTTTTGATTCTTCAC 58.030 36.000 0.00 0.00 0.00 3.18
740 742 6.002062 AGCCTAAGTTTTTGATTCTTCACG 57.998 37.500 0.00 0.00 0.00 4.35
741 743 5.531287 AGCCTAAGTTTTTGATTCTTCACGT 59.469 36.000 0.00 0.00 0.00 4.49
742 744 5.625311 GCCTAAGTTTTTGATTCTTCACGTG 59.375 40.000 9.94 9.94 0.00 4.49
743 745 6.512741 GCCTAAGTTTTTGATTCTTCACGTGA 60.513 38.462 15.76 15.76 0.00 4.35
744 746 7.584987 CCTAAGTTTTTGATTCTTCACGTGAT 58.415 34.615 20.80 3.63 0.00 3.06
745 747 7.535258 CCTAAGTTTTTGATTCTTCACGTGATG 59.465 37.037 20.80 21.46 0.00 3.07
746 748 6.377327 AGTTTTTGATTCTTCACGTGATGT 57.623 33.333 25.38 11.74 0.00 3.06
760 762 6.944557 CACGTGATGTGTGTTATTCTTAGA 57.055 37.500 10.90 0.00 43.88 2.10
761 763 7.346208 CACGTGATGTGTGTTATTCTTAGAA 57.654 36.000 10.90 0.00 43.88 2.10
762 764 7.963981 CACGTGATGTGTGTTATTCTTAGAAT 58.036 34.615 10.90 12.39 43.88 2.40
763 765 7.899841 CACGTGATGTGTGTTATTCTTAGAATG 59.100 37.037 16.86 0.00 43.88 2.67
764 766 7.602644 ACGTGATGTGTGTTATTCTTAGAATGT 59.397 33.333 16.86 0.00 0.00 2.71
765 767 8.110612 CGTGATGTGTGTTATTCTTAGAATGTC 58.889 37.037 16.86 10.09 0.00 3.06
766 768 8.935844 GTGATGTGTGTTATTCTTAGAATGTCA 58.064 33.333 16.86 12.25 0.00 3.58
767 769 9.671279 TGATGTGTGTTATTCTTAGAATGTCAT 57.329 29.630 16.86 11.10 0.00 3.06
839 842 0.748450 ATTAGGCGTACGCTTAGGCA 59.252 50.000 36.24 20.52 40.28 4.75
938 941 1.262683 GAGTAACGCGTACGCCTAGAT 59.737 52.381 32.64 17.20 45.53 1.98
940 943 1.016627 TAACGCGTACGCCTAGATGT 58.983 50.000 32.64 20.89 45.53 3.06
958 961 9.716531 CCTAGATGTGATTATGCAATAGAAAGA 57.283 33.333 0.00 0.00 0.00 2.52
1218 1221 3.771577 AAAGATTCAACTCCTCCACGT 57.228 42.857 0.00 0.00 0.00 4.49
1328 1331 2.091541 GCGATTTCATTTGTCCCTCCA 58.908 47.619 0.00 0.00 0.00 3.86
1371 1375 9.742144 CTCTACTGTAGCCTATAGATTTTCCTA 57.258 37.037 9.98 0.00 0.00 2.94
1871 1881 7.655521 ACTGATAGGTTATACACTTGCACTA 57.344 36.000 0.00 0.00 0.00 2.74
1891 1901 7.147863 TGCACTAATTTGCTGATGGTCATTAAT 60.148 33.333 3.90 0.00 43.41 1.40
1897 1907 4.795469 TGCTGATGGTCATTAATGGTCAT 58.205 39.130 15.36 16.92 0.00 3.06
1921 1931 7.186570 TCTCAACTGGAATCATCAATAGACA 57.813 36.000 0.00 0.00 0.00 3.41
1991 2001 2.644798 ACAAGTTAATGAGGGCTGGTCT 59.355 45.455 0.00 0.00 0.00 3.85
2223 2233 7.554118 GGGATCATTTGTCTCTTCAAGTGAATA 59.446 37.037 8.23 0.00 43.41 1.75
2280 2290 6.281405 ACTTCCGTTATAAGTAGCATCTTGG 58.719 40.000 4.11 0.00 35.44 3.61
2521 2540 6.543735 ACCTTGCAGGACTAAATAAGTTTCT 58.456 36.000 8.91 0.00 39.07 2.52
2962 3164 4.858850 TGAGCATTTGTAGGATGTTGGAT 58.141 39.130 0.00 0.00 0.00 3.41
3012 3214 4.020128 AGAGAATGCCCGTAAGAGAAAGTT 60.020 41.667 0.00 0.00 43.02 2.66
3305 3507 2.695359 GTGTTGGAGATGCCGAAGTTA 58.305 47.619 0.00 0.00 40.66 2.24
3306 3508 2.415512 GTGTTGGAGATGCCGAAGTTAC 59.584 50.000 0.00 0.00 40.66 2.50
3307 3509 2.301870 TGTTGGAGATGCCGAAGTTACT 59.698 45.455 0.00 0.00 40.66 2.24
3308 3510 3.244422 TGTTGGAGATGCCGAAGTTACTT 60.244 43.478 0.00 0.00 40.66 2.24
3309 3511 2.972625 TGGAGATGCCGAAGTTACTTG 58.027 47.619 0.93 0.00 40.66 3.16
3310 3512 2.301870 TGGAGATGCCGAAGTTACTTGT 59.698 45.455 0.93 0.00 40.66 3.16
3311 3513 3.512329 TGGAGATGCCGAAGTTACTTGTA 59.488 43.478 0.93 0.00 40.66 2.41
3312 3514 4.161565 TGGAGATGCCGAAGTTACTTGTAT 59.838 41.667 0.93 0.00 40.66 2.29
3313 3515 5.116882 GGAGATGCCGAAGTTACTTGTATT 58.883 41.667 0.93 0.00 0.00 1.89
3314 3516 5.006746 GGAGATGCCGAAGTTACTTGTATTG 59.993 44.000 0.93 0.00 0.00 1.90
3315 3517 4.876107 AGATGCCGAAGTTACTTGTATTGG 59.124 41.667 0.93 0.00 0.00 3.16
3316 3518 4.274602 TGCCGAAGTTACTTGTATTGGA 57.725 40.909 0.93 0.00 0.00 3.53
3317 3519 4.643463 TGCCGAAGTTACTTGTATTGGAA 58.357 39.130 0.93 0.00 0.00 3.53
3318 3520 4.693566 TGCCGAAGTTACTTGTATTGGAAG 59.306 41.667 0.93 0.00 0.00 3.46
3319 3521 4.436986 GCCGAAGTTACTTGTATTGGAAGC 60.437 45.833 0.93 0.00 0.00 3.86
3320 3522 4.201685 CCGAAGTTACTTGTATTGGAAGCG 60.202 45.833 0.93 0.00 0.00 4.68
3321 3523 4.387862 CGAAGTTACTTGTATTGGAAGCGT 59.612 41.667 0.93 0.00 0.00 5.07
3322 3524 5.107220 CGAAGTTACTTGTATTGGAAGCGTT 60.107 40.000 0.93 0.00 0.00 4.84
3323 3525 5.607119 AGTTACTTGTATTGGAAGCGTTG 57.393 39.130 0.00 0.00 0.00 4.10
3324 3526 5.302360 AGTTACTTGTATTGGAAGCGTTGA 58.698 37.500 0.00 0.00 0.00 3.18
3325 3527 5.408604 AGTTACTTGTATTGGAAGCGTTGAG 59.591 40.000 0.00 0.00 0.00 3.02
3335 3537 3.731136 GCGTTGAGCCACACAAGA 58.269 55.556 0.00 0.00 40.81 3.02
3336 3538 2.247790 GCGTTGAGCCACACAAGAT 58.752 52.632 0.00 0.00 40.81 2.40
3337 3539 1.438651 GCGTTGAGCCACACAAGATA 58.561 50.000 0.00 0.00 40.81 1.98
3338 3540 1.394917 GCGTTGAGCCACACAAGATAG 59.605 52.381 0.00 0.00 40.81 2.08
3339 3541 2.002586 CGTTGAGCCACACAAGATAGG 58.997 52.381 0.00 0.00 0.00 2.57
3340 3542 2.612972 CGTTGAGCCACACAAGATAGGT 60.613 50.000 0.00 0.00 0.00 3.08
3341 3543 3.003480 GTTGAGCCACACAAGATAGGTC 58.997 50.000 0.00 0.00 0.00 3.85
3342 3544 1.555075 TGAGCCACACAAGATAGGTCC 59.445 52.381 0.00 0.00 0.00 4.46
3343 3545 0.912486 AGCCACACAAGATAGGTCCC 59.088 55.000 0.00 0.00 0.00 4.46
3344 3546 0.618458 GCCACACAAGATAGGTCCCA 59.382 55.000 0.00 0.00 0.00 4.37
3345 3547 1.212935 GCCACACAAGATAGGTCCCAT 59.787 52.381 0.00 0.00 0.00 4.00
3346 3548 2.357154 GCCACACAAGATAGGTCCCATT 60.357 50.000 0.00 0.00 0.00 3.16
3347 3549 3.282021 CCACACAAGATAGGTCCCATTG 58.718 50.000 0.00 0.00 0.00 2.82
3348 3550 3.054434 CCACACAAGATAGGTCCCATTGA 60.054 47.826 0.00 0.00 0.00 2.57
3349 3551 4.385643 CCACACAAGATAGGTCCCATTGAT 60.386 45.833 0.00 0.00 0.00 2.57
3350 3552 5.163205 CCACACAAGATAGGTCCCATTGATA 60.163 44.000 0.00 0.00 0.00 2.15
3351 3553 5.994054 CACACAAGATAGGTCCCATTGATAG 59.006 44.000 0.00 0.00 0.00 2.08
3352 3554 5.667626 ACACAAGATAGGTCCCATTGATAGT 59.332 40.000 0.00 0.00 0.00 2.12
3353 3555 5.994054 CACAAGATAGGTCCCATTGATAGTG 59.006 44.000 0.00 0.00 0.00 2.74
3354 3556 5.072329 ACAAGATAGGTCCCATTGATAGTGG 59.928 44.000 0.00 0.00 36.47 4.00
3355 3557 5.093236 AGATAGGTCCCATTGATAGTGGA 57.907 43.478 0.00 0.00 39.12 4.02
3356 3558 4.841246 AGATAGGTCCCATTGATAGTGGAC 59.159 45.833 0.00 0.00 45.25 4.02
3359 3561 2.550978 GTCCCATTGATAGTGGACACG 58.449 52.381 0.00 0.00 45.29 4.49
3360 3562 2.093658 GTCCCATTGATAGTGGACACGT 60.094 50.000 0.00 0.00 45.29 4.49
3361 3563 2.167693 TCCCATTGATAGTGGACACGTC 59.832 50.000 0.00 1.03 39.12 4.34
3374 3576 4.931661 GGACACGTCCTATTGATCCTAA 57.068 45.455 9.04 0.00 46.16 2.69
3375 3577 5.272283 GGACACGTCCTATTGATCCTAAA 57.728 43.478 9.04 0.00 46.16 1.85
3376 3578 5.855045 GGACACGTCCTATTGATCCTAAAT 58.145 41.667 9.04 0.00 46.16 1.40
3377 3579 6.289064 GGACACGTCCTATTGATCCTAAATT 58.711 40.000 9.04 0.00 46.16 1.82
3378 3580 7.439381 GGACACGTCCTATTGATCCTAAATTA 58.561 38.462 9.04 0.00 46.16 1.40
3379 3581 7.929785 GGACACGTCCTATTGATCCTAAATTAA 59.070 37.037 9.04 0.00 46.16 1.40
3380 3582 8.658499 ACACGTCCTATTGATCCTAAATTAAC 57.342 34.615 0.00 0.00 0.00 2.01
3381 3583 8.483758 ACACGTCCTATTGATCCTAAATTAACT 58.516 33.333 0.00 0.00 0.00 2.24
3382 3584 8.979574 CACGTCCTATTGATCCTAAATTAACTC 58.020 37.037 0.00 0.00 0.00 3.01
3383 3585 8.701895 ACGTCCTATTGATCCTAAATTAACTCA 58.298 33.333 0.00 0.00 0.00 3.41
3384 3586 9.542462 CGTCCTATTGATCCTAAATTAACTCAA 57.458 33.333 0.00 0.00 0.00 3.02
3391 3593 9.638239 TTGATCCTAAATTAACTCAAATTGTGC 57.362 29.630 0.00 0.00 0.00 4.57
3392 3594 7.967854 TGATCCTAAATTAACTCAAATTGTGCG 59.032 33.333 0.00 0.00 0.00 5.34
3393 3595 7.209471 TCCTAAATTAACTCAAATTGTGCGT 57.791 32.000 0.00 0.00 0.00 5.24
3394 3596 7.302524 TCCTAAATTAACTCAAATTGTGCGTC 58.697 34.615 0.00 0.00 0.00 5.19
3395 3597 7.174253 TCCTAAATTAACTCAAATTGTGCGTCT 59.826 33.333 0.00 0.00 0.00 4.18
3396 3598 6.991485 AAATTAACTCAAATTGTGCGTCTG 57.009 33.333 0.00 0.00 0.00 3.51
3397 3599 5.689383 ATTAACTCAAATTGTGCGTCTGT 57.311 34.783 0.00 0.00 0.00 3.41
3398 3600 3.338818 AACTCAAATTGTGCGTCTGTG 57.661 42.857 0.00 0.00 0.00 3.66
3399 3601 2.288666 ACTCAAATTGTGCGTCTGTGT 58.711 42.857 0.00 0.00 0.00 3.72
3400 3602 2.032054 ACTCAAATTGTGCGTCTGTGTG 59.968 45.455 0.00 0.00 0.00 3.82
3401 3603 1.333308 TCAAATTGTGCGTCTGTGTGG 59.667 47.619 0.00 0.00 0.00 4.17
3402 3604 1.333308 CAAATTGTGCGTCTGTGTGGA 59.667 47.619 0.00 0.00 0.00 4.02
3403 3605 1.674359 AATTGTGCGTCTGTGTGGAA 58.326 45.000 0.00 0.00 0.00 3.53
3404 3606 0.944386 ATTGTGCGTCTGTGTGGAAC 59.056 50.000 0.00 0.00 37.35 3.62
3405 3607 0.107897 TTGTGCGTCTGTGTGGAACT 60.108 50.000 0.00 0.00 38.04 3.01
3406 3608 0.747852 TGTGCGTCTGTGTGGAACTA 59.252 50.000 0.00 0.00 38.04 2.24
3407 3609 1.343142 TGTGCGTCTGTGTGGAACTAT 59.657 47.619 0.00 0.00 38.04 2.12
3408 3610 1.993370 GTGCGTCTGTGTGGAACTATC 59.007 52.381 0.00 0.00 38.04 2.08
3409 3611 1.067142 TGCGTCTGTGTGGAACTATCC 60.067 52.381 0.00 0.00 46.76 2.59
3410 3612 1.739371 GCGTCTGTGTGGAACTATCCC 60.739 57.143 0.00 0.00 45.95 3.85
3411 3613 1.825474 CGTCTGTGTGGAACTATCCCT 59.175 52.381 0.00 0.00 45.95 4.20
3412 3614 2.417379 CGTCTGTGTGGAACTATCCCTG 60.417 54.545 0.00 0.00 45.95 4.45
3413 3615 2.567615 GTCTGTGTGGAACTATCCCTGT 59.432 50.000 0.00 0.00 45.95 4.00
3414 3616 3.008049 GTCTGTGTGGAACTATCCCTGTT 59.992 47.826 0.00 0.00 45.95 3.16
3415 3617 3.007940 TCTGTGTGGAACTATCCCTGTTG 59.992 47.826 0.00 0.00 45.95 3.33
3416 3618 2.039746 TGTGTGGAACTATCCCTGTTGG 59.960 50.000 0.00 0.00 45.95 3.77
3429 3631 3.004752 CCTGTTGGGACTTGGGATAAG 57.995 52.381 0.00 0.00 37.23 1.73
3430 3632 2.308866 CCTGTTGGGACTTGGGATAAGT 59.691 50.000 0.00 0.00 37.23 2.24
3431 3633 3.610911 CTGTTGGGACTTGGGATAAGTC 58.389 50.000 10.49 10.49 44.38 3.01
3432 3634 3.256704 TGTTGGGACTTGGGATAAGTCT 58.743 45.455 16.55 0.00 44.49 3.24
3433 3635 3.655777 TGTTGGGACTTGGGATAAGTCTT 59.344 43.478 16.55 0.00 44.49 3.01
3434 3636 4.105697 TGTTGGGACTTGGGATAAGTCTTT 59.894 41.667 16.55 0.00 44.49 2.52
3435 3637 4.569719 TGGGACTTGGGATAAGTCTTTC 57.430 45.455 16.55 9.29 44.49 2.62
3436 3638 3.913799 TGGGACTTGGGATAAGTCTTTCA 59.086 43.478 16.55 11.13 44.49 2.69
3437 3639 4.352595 TGGGACTTGGGATAAGTCTTTCAA 59.647 41.667 16.55 0.00 44.49 2.69
3438 3640 5.163034 TGGGACTTGGGATAAGTCTTTCAAA 60.163 40.000 16.55 0.00 44.49 2.69
3439 3641 5.952347 GGGACTTGGGATAAGTCTTTCAAAT 59.048 40.000 16.55 0.00 44.49 2.32
3440 3642 7.116736 GGGACTTGGGATAAGTCTTTCAAATA 58.883 38.462 16.55 0.00 44.49 1.40
3441 3643 7.614192 GGGACTTGGGATAAGTCTTTCAAATAA 59.386 37.037 16.55 0.00 44.49 1.40
3442 3644 8.678199 GGACTTGGGATAAGTCTTTCAAATAAG 58.322 37.037 16.55 0.00 44.49 1.73
3443 3645 9.449719 GACTTGGGATAAGTCTTTCAAATAAGA 57.550 33.333 11.44 0.00 42.44 2.10
3444 3646 9.981460 ACTTGGGATAAGTCTTTCAAATAAGAT 57.019 29.630 0.00 0.00 36.60 2.40
3466 3668 9.702253 AAGATTCTAGGAATAGAGTACTTGTGA 57.298 33.333 0.00 0.00 0.00 3.58
3843 4272 1.028905 GCTAGGCAGAGAGTCATCGT 58.971 55.000 0.00 0.00 0.00 3.73
3881 4310 4.747605 GCGCTTTTTCCAACCTTGAATAAA 59.252 37.500 0.00 0.00 0.00 1.40
3882 4311 5.235401 GCGCTTTTTCCAACCTTGAATAAAA 59.765 36.000 0.00 0.00 0.00 1.52
3883 4312 6.073276 GCGCTTTTTCCAACCTTGAATAAAAT 60.073 34.615 0.00 0.00 0.00 1.82
3884 4313 7.117092 GCGCTTTTTCCAACCTTGAATAAAATA 59.883 33.333 0.00 0.00 0.00 1.40
3885 4314 8.432359 CGCTTTTTCCAACCTTGAATAAAATAC 58.568 33.333 0.00 0.00 0.00 1.89
3886 4315 9.489084 GCTTTTTCCAACCTTGAATAAAATACT 57.511 29.630 0.00 0.00 0.00 2.12
3933 4362 7.775053 AAATAAAGTCCTCAAATAGTTGCCA 57.225 32.000 0.00 0.00 34.50 4.92
3934 4363 7.396540 AATAAAGTCCTCAAATAGTTGCCAG 57.603 36.000 0.00 0.00 34.50 4.85
3935 4364 3.356529 AGTCCTCAAATAGTTGCCAGG 57.643 47.619 4.67 4.67 34.50 4.45
3936 4365 2.025887 AGTCCTCAAATAGTTGCCAGGG 60.026 50.000 9.90 4.85 32.15 4.45
3937 4366 2.026262 GTCCTCAAATAGTTGCCAGGGA 60.026 50.000 9.90 6.70 32.15 4.20
3938 4367 2.239654 TCCTCAAATAGTTGCCAGGGAG 59.760 50.000 9.90 0.00 32.15 4.30
3939 4368 2.648059 CTCAAATAGTTGCCAGGGAGG 58.352 52.381 0.00 0.00 41.84 4.30
3958 4387 2.739293 GCTAACTAAGCGGCATTCAC 57.261 50.000 1.45 0.00 42.53 3.18
3959 4388 2.006888 GCTAACTAAGCGGCATTCACA 58.993 47.619 1.45 0.00 42.53 3.58
3960 4389 2.614057 GCTAACTAAGCGGCATTCACAT 59.386 45.455 1.45 0.00 42.53 3.21
3961 4390 3.303395 GCTAACTAAGCGGCATTCACATC 60.303 47.826 1.45 0.00 42.53 3.06
3962 4391 1.668419 ACTAAGCGGCATTCACATCC 58.332 50.000 1.45 0.00 0.00 3.51
3963 4392 0.947244 CTAAGCGGCATTCACATCCC 59.053 55.000 1.45 0.00 0.00 3.85
3964 4393 0.813610 TAAGCGGCATTCACATCCCG 60.814 55.000 1.45 0.00 43.38 5.14
3965 4394 2.819984 AAGCGGCATTCACATCCCGT 62.820 55.000 1.45 0.00 42.54 5.28
3966 4395 2.823829 GCGGCATTCACATCCCGTC 61.824 63.158 0.00 0.00 42.54 4.79
3967 4396 1.449423 CGGCATTCACATCCCGTCA 60.449 57.895 0.00 0.00 36.18 4.35
3968 4397 1.024046 CGGCATTCACATCCCGTCAA 61.024 55.000 0.00 0.00 36.18 3.18
3969 4398 0.451783 GGCATTCACATCCCGTCAAC 59.548 55.000 0.00 0.00 0.00 3.18
3970 4399 0.096976 GCATTCACATCCCGTCAACG 59.903 55.000 0.00 0.00 39.44 4.10
3971 4400 1.720805 CATTCACATCCCGTCAACGA 58.279 50.000 3.71 0.00 43.02 3.85
3972 4401 2.073056 CATTCACATCCCGTCAACGAA 58.927 47.619 3.71 0.00 43.02 3.85
3973 4402 1.790755 TTCACATCCCGTCAACGAAG 58.209 50.000 3.71 0.00 43.02 3.79
3974 4403 0.669318 TCACATCCCGTCAACGAAGC 60.669 55.000 3.71 0.00 43.02 3.86
3975 4404 0.670546 CACATCCCGTCAACGAAGCT 60.671 55.000 3.71 0.00 43.02 3.74
3976 4405 0.389948 ACATCCCGTCAACGAAGCTC 60.390 55.000 3.71 0.00 43.02 4.09
3977 4406 0.108615 CATCCCGTCAACGAAGCTCT 60.109 55.000 3.71 0.00 43.02 4.09
3978 4407 0.608640 ATCCCGTCAACGAAGCTCTT 59.391 50.000 3.71 0.00 43.02 2.85
3979 4408 0.391597 TCCCGTCAACGAAGCTCTTT 59.608 50.000 3.71 0.00 43.02 2.52
3980 4409 1.202604 TCCCGTCAACGAAGCTCTTTT 60.203 47.619 3.71 0.00 43.02 2.27
3981 4410 1.194772 CCCGTCAACGAAGCTCTTTTC 59.805 52.381 3.71 0.00 43.02 2.29
3982 4411 2.135933 CCGTCAACGAAGCTCTTTTCT 58.864 47.619 3.71 0.00 43.02 2.52
3983 4412 3.314553 CCGTCAACGAAGCTCTTTTCTA 58.685 45.455 3.71 0.00 43.02 2.10
3984 4413 3.121445 CCGTCAACGAAGCTCTTTTCTAC 59.879 47.826 3.71 0.00 43.02 2.59
3985 4414 3.181552 CGTCAACGAAGCTCTTTTCTACG 60.182 47.826 0.00 0.00 43.02 3.51
3986 4415 3.121445 GTCAACGAAGCTCTTTTCTACGG 59.879 47.826 0.00 0.00 0.00 4.02
3987 4416 3.005050 TCAACGAAGCTCTTTTCTACGGA 59.995 43.478 0.00 0.00 0.00 4.69
3988 4417 3.655276 ACGAAGCTCTTTTCTACGGAA 57.345 42.857 0.00 0.00 0.00 4.30
3989 4418 4.189639 ACGAAGCTCTTTTCTACGGAAT 57.810 40.909 0.00 0.00 0.00 3.01
3990 4419 4.566987 ACGAAGCTCTTTTCTACGGAATT 58.433 39.130 0.00 0.00 0.00 2.17
3991 4420 4.389077 ACGAAGCTCTTTTCTACGGAATTG 59.611 41.667 0.00 0.00 0.00 2.32
3992 4421 4.653004 GAAGCTCTTTTCTACGGAATTGC 58.347 43.478 0.00 0.00 0.00 3.56
3993 4422 3.944087 AGCTCTTTTCTACGGAATTGCT 58.056 40.909 0.00 0.00 0.00 3.91
3994 4423 3.935828 AGCTCTTTTCTACGGAATTGCTC 59.064 43.478 0.00 0.00 0.00 4.26
3995 4424 3.935828 GCTCTTTTCTACGGAATTGCTCT 59.064 43.478 0.00 0.00 0.00 4.09
3996 4425 5.105310 AGCTCTTTTCTACGGAATTGCTCTA 60.105 40.000 0.00 0.00 0.00 2.43
3997 4426 5.233263 GCTCTTTTCTACGGAATTGCTCTAG 59.767 44.000 0.00 0.00 0.00 2.43
3998 4427 6.282199 TCTTTTCTACGGAATTGCTCTAGT 57.718 37.500 0.00 0.00 0.00 2.57
3999 4428 6.100004 TCTTTTCTACGGAATTGCTCTAGTG 58.900 40.000 0.00 0.00 0.00 2.74
4000 4429 3.438297 TCTACGGAATTGCTCTAGTGC 57.562 47.619 9.86 9.86 0.00 4.40
4001 4430 3.024547 TCTACGGAATTGCTCTAGTGCT 58.975 45.455 17.08 0.00 0.00 4.40
4002 4431 2.770164 ACGGAATTGCTCTAGTGCTT 57.230 45.000 17.08 4.82 0.00 3.91
4003 4432 2.622436 ACGGAATTGCTCTAGTGCTTC 58.378 47.619 17.08 12.74 0.00 3.86
4004 4433 2.028112 ACGGAATTGCTCTAGTGCTTCA 60.028 45.455 17.08 2.87 0.00 3.02
4005 4434 2.349886 CGGAATTGCTCTAGTGCTTCAC 59.650 50.000 17.08 7.07 34.10 3.18
4007 4436 4.006319 GGAATTGCTCTAGTGCTTCACTT 58.994 43.478 17.08 4.49 42.59 3.16
4008 4437 5.178797 GGAATTGCTCTAGTGCTTCACTTA 58.821 41.667 17.08 0.00 42.59 2.24
4009 4438 5.819901 GGAATTGCTCTAGTGCTTCACTTAT 59.180 40.000 17.08 0.00 42.59 1.73
4010 4439 6.986817 GGAATTGCTCTAGTGCTTCACTTATA 59.013 38.462 17.08 0.00 42.59 0.98
4011 4440 7.659390 GGAATTGCTCTAGTGCTTCACTTATAT 59.341 37.037 17.08 0.00 42.59 0.86
4012 4441 8.600449 AATTGCTCTAGTGCTTCACTTATATC 57.400 34.615 17.08 0.00 42.59 1.63
4013 4442 6.090483 TGCTCTAGTGCTTCACTTATATCC 57.910 41.667 17.08 0.00 42.59 2.59
4014 4443 5.835819 TGCTCTAGTGCTTCACTTATATCCT 59.164 40.000 17.08 0.00 42.59 3.24
4015 4444 7.004691 TGCTCTAGTGCTTCACTTATATCCTA 58.995 38.462 17.08 0.00 42.59 2.94
4016 4445 7.671819 TGCTCTAGTGCTTCACTTATATCCTAT 59.328 37.037 17.08 0.00 42.59 2.57
4017 4446 9.179909 GCTCTAGTGCTTCACTTATATCCTATA 57.820 37.037 9.52 0.00 42.59 1.31
4054 4483 9.642327 TGAATAAATTGAATGTCATGAAGTTGG 57.358 29.630 0.00 0.00 0.00 3.77
4055 4484 9.859427 GAATAAATTGAATGTCATGAAGTTGGA 57.141 29.630 0.00 0.00 0.00 3.53
4058 4487 8.767478 AAATTGAATGTCATGAAGTTGGAATC 57.233 30.769 0.00 0.00 0.00 2.52
4059 4488 6.897706 TTGAATGTCATGAAGTTGGAATCA 57.102 33.333 0.00 0.00 0.00 2.57
4060 4489 7.470935 TTGAATGTCATGAAGTTGGAATCAT 57.529 32.000 0.00 0.00 36.74 2.45
4061 4490 8.578448 TTGAATGTCATGAAGTTGGAATCATA 57.422 30.769 0.00 0.00 34.61 2.15
4062 4491 8.756486 TGAATGTCATGAAGTTGGAATCATAT 57.244 30.769 0.00 0.00 34.61 1.78
4063 4492 8.843262 TGAATGTCATGAAGTTGGAATCATATC 58.157 33.333 0.00 0.00 34.61 1.63
4064 4493 8.756486 AATGTCATGAAGTTGGAATCATATCA 57.244 30.769 0.00 0.00 34.61 2.15
4065 4494 8.935614 ATGTCATGAAGTTGGAATCATATCAT 57.064 30.769 0.00 0.00 34.61 2.45
4066 4495 8.161699 TGTCATGAAGTTGGAATCATATCATG 57.838 34.615 0.00 6.53 34.61 3.07
4067 4496 7.082602 GTCATGAAGTTGGAATCATATCATGC 58.917 38.462 0.00 1.41 34.61 4.06
4068 4497 6.208007 TCATGAAGTTGGAATCATATCATGCC 59.792 38.462 7.73 0.00 34.61 4.40
4069 4498 5.698104 TGAAGTTGGAATCATATCATGCCT 58.302 37.500 0.00 0.00 0.00 4.75
4070 4499 6.840527 TGAAGTTGGAATCATATCATGCCTA 58.159 36.000 0.00 0.00 0.00 3.93
4071 4500 6.938596 TGAAGTTGGAATCATATCATGCCTAG 59.061 38.462 0.00 0.00 0.00 3.02
4072 4501 6.445451 AGTTGGAATCATATCATGCCTAGT 57.555 37.500 0.00 0.00 0.00 2.57
4073 4502 6.236409 AGTTGGAATCATATCATGCCTAGTG 58.764 40.000 0.00 0.00 0.00 2.74
4074 4503 5.169992 TGGAATCATATCATGCCTAGTGG 57.830 43.478 0.00 0.00 0.00 4.00
4075 4504 4.598807 TGGAATCATATCATGCCTAGTGGT 59.401 41.667 0.00 0.00 35.27 4.16
4076 4505 5.784906 TGGAATCATATCATGCCTAGTGGTA 59.215 40.000 0.00 0.00 35.27 3.25
4077 4506 6.070596 TGGAATCATATCATGCCTAGTGGTAG 60.071 42.308 0.00 0.00 35.27 3.18
4078 4507 4.808414 TCATATCATGCCTAGTGGTAGC 57.192 45.455 0.00 0.00 35.27 3.58
4079 4508 4.420206 TCATATCATGCCTAGTGGTAGCT 58.580 43.478 0.00 0.00 35.27 3.32
4080 4509 4.840680 TCATATCATGCCTAGTGGTAGCTT 59.159 41.667 0.00 0.00 35.27 3.74
4081 4510 3.760580 ATCATGCCTAGTGGTAGCTTC 57.239 47.619 0.00 0.00 35.27 3.86
4082 4511 2.466846 TCATGCCTAGTGGTAGCTTCA 58.533 47.619 0.00 0.00 35.27 3.02
4083 4512 2.168521 TCATGCCTAGTGGTAGCTTCAC 59.831 50.000 10.73 10.73 35.27 3.18
4084 4513 1.639722 TGCCTAGTGGTAGCTTCACA 58.360 50.000 18.11 2.27 37.58 3.58
4085 4514 2.187958 TGCCTAGTGGTAGCTTCACAT 58.812 47.619 18.11 8.81 37.58 3.21
4086 4515 2.571653 TGCCTAGTGGTAGCTTCACATT 59.428 45.455 18.11 4.51 37.58 2.71
4087 4516 2.939103 GCCTAGTGGTAGCTTCACATTG 59.061 50.000 18.11 9.18 37.58 2.82
4088 4517 3.535561 CCTAGTGGTAGCTTCACATTGG 58.464 50.000 18.11 13.35 37.58 3.16
4089 4518 2.496899 AGTGGTAGCTTCACATTGGG 57.503 50.000 18.11 0.00 37.58 4.12
4090 4519 1.705186 AGTGGTAGCTTCACATTGGGT 59.295 47.619 18.11 0.00 37.58 4.51
4091 4520 2.108250 AGTGGTAGCTTCACATTGGGTT 59.892 45.455 18.11 0.00 37.58 4.11
4092 4521 2.890945 GTGGTAGCTTCACATTGGGTTT 59.109 45.455 13.02 0.00 35.39 3.27
4093 4522 4.076394 GTGGTAGCTTCACATTGGGTTTA 58.924 43.478 13.02 0.00 35.39 2.01
4094 4523 4.521256 GTGGTAGCTTCACATTGGGTTTAA 59.479 41.667 13.02 0.00 35.39 1.52
4095 4524 5.010213 GTGGTAGCTTCACATTGGGTTTAAA 59.990 40.000 13.02 0.00 35.39 1.52
4096 4525 5.598830 TGGTAGCTTCACATTGGGTTTAAAA 59.401 36.000 0.00 0.00 0.00 1.52
4097 4526 6.098409 TGGTAGCTTCACATTGGGTTTAAAAA 59.902 34.615 0.00 0.00 0.00 1.94
4098 4527 6.645003 GGTAGCTTCACATTGGGTTTAAAAAG 59.355 38.462 0.00 0.00 0.00 2.27
4099 4528 6.233905 AGCTTCACATTGGGTTTAAAAAGT 57.766 33.333 0.00 0.00 0.00 2.66
4100 4529 6.048509 AGCTTCACATTGGGTTTAAAAAGTG 58.951 36.000 0.00 0.00 0.00 3.16
4101 4530 6.045955 GCTTCACATTGGGTTTAAAAAGTGA 58.954 36.000 0.00 0.00 33.44 3.41
4102 4531 6.536941 GCTTCACATTGGGTTTAAAAAGTGAA 59.463 34.615 0.00 0.00 40.98 3.18
4103 4532 7.226523 GCTTCACATTGGGTTTAAAAAGTGAAT 59.773 33.333 8.18 0.00 41.92 2.57
4104 4533 8.655651 TTCACATTGGGTTTAAAAAGTGAATC 57.344 30.769 0.00 0.00 39.12 2.52
4105 4534 8.017418 TCACATTGGGTTTAAAAAGTGAATCT 57.983 30.769 0.00 0.00 32.46 2.40
4106 4535 8.482128 TCACATTGGGTTTAAAAAGTGAATCTT 58.518 29.630 0.00 0.00 38.10 2.40
4107 4536 9.108284 CACATTGGGTTTAAAAAGTGAATCTTT 57.892 29.630 0.00 0.00 46.86 2.52
4118 4547 5.444663 AAGTGAATCTTTTGAGGCTTGAC 57.555 39.130 0.00 0.00 31.57 3.18
4119 4548 4.464008 AGTGAATCTTTTGAGGCTTGACA 58.536 39.130 0.00 0.00 0.00 3.58
4120 4549 4.889409 AGTGAATCTTTTGAGGCTTGACAA 59.111 37.500 0.00 0.00 0.00 3.18
4121 4550 5.537674 AGTGAATCTTTTGAGGCTTGACAAT 59.462 36.000 0.00 0.00 0.00 2.71
4122 4551 5.860716 GTGAATCTTTTGAGGCTTGACAATC 59.139 40.000 0.00 0.00 0.00 2.67
4123 4552 5.535783 TGAATCTTTTGAGGCTTGACAATCA 59.464 36.000 0.00 0.00 0.00 2.57
4124 4553 4.836125 TCTTTTGAGGCTTGACAATCAC 57.164 40.909 0.00 0.00 0.00 3.06
4125 4554 4.206375 TCTTTTGAGGCTTGACAATCACA 58.794 39.130 0.00 0.00 0.00 3.58
4126 4555 4.644234 TCTTTTGAGGCTTGACAATCACAA 59.356 37.500 0.00 0.00 0.00 3.33
4127 4556 5.302568 TCTTTTGAGGCTTGACAATCACAAT 59.697 36.000 0.00 0.00 0.00 2.71
4128 4557 6.489700 TCTTTTGAGGCTTGACAATCACAATA 59.510 34.615 0.00 0.00 0.00 1.90
4129 4558 6.839124 TTTGAGGCTTGACAATCACAATAT 57.161 33.333 0.00 0.00 0.00 1.28
4130 4559 6.839124 TTGAGGCTTGACAATCACAATATT 57.161 33.333 0.00 0.00 0.00 1.28
4131 4560 6.198650 TGAGGCTTGACAATCACAATATTG 57.801 37.500 14.01 14.01 41.65 1.90
4132 4561 5.125900 TGAGGCTTGACAATCACAATATTGG 59.874 40.000 19.37 8.69 40.48 3.16
4133 4562 5.018809 AGGCTTGACAATCACAATATTGGT 58.981 37.500 19.37 7.15 40.48 3.67
4134 4563 5.126061 AGGCTTGACAATCACAATATTGGTC 59.874 40.000 19.37 15.34 40.48 4.02
4135 4564 5.105797 GGCTTGACAATCACAATATTGGTCA 60.106 40.000 19.37 17.44 40.48 4.02
4136 4565 6.406177 GGCTTGACAATCACAATATTGGTCAT 60.406 38.462 19.37 5.47 40.48 3.06
4137 4566 7.201812 GGCTTGACAATCACAATATTGGTCATA 60.202 37.037 19.37 11.23 40.48 2.15
4138 4567 8.355169 GCTTGACAATCACAATATTGGTCATAT 58.645 33.333 19.37 1.21 40.48 1.78
4142 4571 9.831737 GACAATCACAATATTGGTCATATAAGC 57.168 33.333 19.37 0.00 40.48 3.09
4143 4572 9.353431 ACAATCACAATATTGGTCATATAAGCA 57.647 29.630 19.37 0.00 40.48 3.91
4150 4579 9.333497 CAATATTGGTCATATAAGCAATTCACG 57.667 33.333 8.55 0.00 42.96 4.35
4151 4580 8.846943 ATATTGGTCATATAAGCAATTCACGA 57.153 30.769 8.55 0.00 42.96 4.35
4152 4581 6.993786 TTGGTCATATAAGCAATTCACGAA 57.006 33.333 0.00 0.00 32.06 3.85
4153 4582 7.566760 TTGGTCATATAAGCAATTCACGAAT 57.433 32.000 0.00 0.00 32.06 3.34
4154 4583 8.669946 TTGGTCATATAAGCAATTCACGAATA 57.330 30.769 0.00 0.00 32.06 1.75
4155 4584 8.669946 TGGTCATATAAGCAATTCACGAATAA 57.330 30.769 0.00 0.00 0.00 1.40
4156 4585 9.283768 TGGTCATATAAGCAATTCACGAATAAT 57.716 29.630 0.00 0.00 0.00 1.28
4184 4613 6.749923 ATAAGGAAGAGAACTTTCACATGC 57.250 37.500 0.00 0.00 36.39 4.06
4185 4614 4.090761 AGGAAGAGAACTTTCACATGCA 57.909 40.909 0.00 0.00 36.39 3.96
4186 4615 4.464008 AGGAAGAGAACTTTCACATGCAA 58.536 39.130 0.00 0.00 36.39 4.08
4187 4616 4.889409 AGGAAGAGAACTTTCACATGCAAA 59.111 37.500 0.00 0.00 36.39 3.68
4188 4617 5.537674 AGGAAGAGAACTTTCACATGCAAAT 59.462 36.000 0.00 0.00 36.39 2.32
4189 4618 6.716628 AGGAAGAGAACTTTCACATGCAAATA 59.283 34.615 0.00 0.00 36.39 1.40
4190 4619 6.803807 GGAAGAGAACTTTCACATGCAAATAC 59.196 38.462 0.00 0.00 36.39 1.89
4191 4620 6.882610 AGAGAACTTTCACATGCAAATACA 57.117 33.333 0.00 0.00 0.00 2.29
4192 4621 6.672147 AGAGAACTTTCACATGCAAATACAC 58.328 36.000 0.00 0.00 0.00 2.90
4193 4622 6.488006 AGAGAACTTTCACATGCAAATACACT 59.512 34.615 0.00 0.00 0.00 3.55
4194 4623 7.661437 AGAGAACTTTCACATGCAAATACACTA 59.339 33.333 0.00 0.00 0.00 2.74
4195 4624 8.340618 AGAACTTTCACATGCAAATACACTAT 57.659 30.769 0.00 0.00 0.00 2.12
4196 4625 8.454106 AGAACTTTCACATGCAAATACACTATC 58.546 33.333 0.00 0.00 0.00 2.08
4197 4626 7.686438 ACTTTCACATGCAAATACACTATCA 57.314 32.000 0.00 0.00 0.00 2.15
4198 4627 8.284945 ACTTTCACATGCAAATACACTATCAT 57.715 30.769 0.00 0.00 0.00 2.45
4199 4628 8.186163 ACTTTCACATGCAAATACACTATCATG 58.814 33.333 0.00 0.00 37.78 3.07
4200 4629 6.622833 TCACATGCAAATACACTATCATGG 57.377 37.500 0.00 0.00 36.54 3.66
4201 4630 6.355747 TCACATGCAAATACACTATCATGGA 58.644 36.000 0.00 0.00 36.54 3.41
4202 4631 6.827762 TCACATGCAAATACACTATCATGGAA 59.172 34.615 0.00 0.00 36.54 3.53
4203 4632 7.338957 TCACATGCAAATACACTATCATGGAAA 59.661 33.333 0.00 0.00 36.54 3.13
4204 4633 8.139350 CACATGCAAATACACTATCATGGAAAT 58.861 33.333 0.00 0.00 36.54 2.17
4205 4634 8.355169 ACATGCAAATACACTATCATGGAAATC 58.645 33.333 0.00 0.00 36.54 2.17
4206 4635 8.573885 CATGCAAATACACTATCATGGAAATCT 58.426 33.333 0.00 0.00 0.00 2.40
4207 4636 8.523915 TGCAAATACACTATCATGGAAATCTT 57.476 30.769 0.00 0.00 0.00 2.40
4208 4637 8.970020 TGCAAATACACTATCATGGAAATCTTT 58.030 29.630 0.00 0.00 0.00 2.52
4209 4638 9.807649 GCAAATACACTATCATGGAAATCTTTT 57.192 29.630 0.00 0.00 0.00 2.27
4211 4640 9.807649 AAATACACTATCATGGAAATCTTTTGC 57.192 29.630 0.00 0.00 0.00 3.68
4212 4641 5.883661 ACACTATCATGGAAATCTTTTGCG 58.116 37.500 0.00 0.00 0.00 4.85
4213 4642 5.647658 ACACTATCATGGAAATCTTTTGCGA 59.352 36.000 0.00 0.00 0.00 5.10
4214 4643 6.319658 ACACTATCATGGAAATCTTTTGCGAT 59.680 34.615 0.00 0.00 0.00 4.58
4215 4644 7.148018 ACACTATCATGGAAATCTTTTGCGATT 60.148 33.333 0.00 0.00 35.23 3.34
4216 4645 7.166970 CACTATCATGGAAATCTTTTGCGATTG 59.833 37.037 0.00 0.00 34.07 2.67
4217 4646 5.389859 TCATGGAAATCTTTTGCGATTGT 57.610 34.783 0.00 0.00 34.07 2.71
4218 4647 5.162794 TCATGGAAATCTTTTGCGATTGTG 58.837 37.500 0.00 0.00 34.07 3.33
4219 4648 4.844998 TGGAAATCTTTTGCGATTGTGA 57.155 36.364 0.00 0.00 34.07 3.58
4220 4649 4.797471 TGGAAATCTTTTGCGATTGTGAG 58.203 39.130 0.00 0.00 34.07 3.51
4221 4650 3.609807 GGAAATCTTTTGCGATTGTGAGC 59.390 43.478 0.00 0.00 34.07 4.26
4222 4651 2.927553 ATCTTTTGCGATTGTGAGCC 57.072 45.000 0.00 0.00 0.00 4.70
4223 4652 0.881118 TCTTTTGCGATTGTGAGCCC 59.119 50.000 0.00 0.00 0.00 5.19
4224 4653 0.109132 CTTTTGCGATTGTGAGCCCC 60.109 55.000 0.00 0.00 0.00 5.80
4225 4654 1.531739 TTTTGCGATTGTGAGCCCCC 61.532 55.000 0.00 0.00 0.00 5.40
4226 4655 2.705312 TTTGCGATTGTGAGCCCCCA 62.705 55.000 0.00 0.00 0.00 4.96
4227 4656 2.124151 GCGATTGTGAGCCCCCAT 60.124 61.111 0.00 0.00 0.00 4.00
4228 4657 2.189499 GCGATTGTGAGCCCCCATC 61.189 63.158 0.00 0.00 0.00 3.51
4229 4658 1.224315 CGATTGTGAGCCCCCATCA 59.776 57.895 0.00 0.00 0.00 3.07
4230 4659 0.394216 CGATTGTGAGCCCCCATCAA 60.394 55.000 0.00 0.00 0.00 2.57
4231 4660 1.851304 GATTGTGAGCCCCCATCAAA 58.149 50.000 0.00 0.00 0.00 2.69
4232 4661 2.178580 GATTGTGAGCCCCCATCAAAA 58.821 47.619 0.00 0.00 0.00 2.44
4233 4662 2.323999 TTGTGAGCCCCCATCAAAAT 57.676 45.000 0.00 0.00 0.00 1.82
4234 4663 3.464720 TTGTGAGCCCCCATCAAAATA 57.535 42.857 0.00 0.00 0.00 1.40
4235 4664 3.686227 TGTGAGCCCCCATCAAAATAT 57.314 42.857 0.00 0.00 0.00 1.28
4236 4665 3.992999 TGTGAGCCCCCATCAAAATATT 58.007 40.909 0.00 0.00 0.00 1.28
4237 4666 5.136068 TGTGAGCCCCCATCAAAATATTA 57.864 39.130 0.00 0.00 0.00 0.98
4238 4667 5.714863 TGTGAGCCCCCATCAAAATATTAT 58.285 37.500 0.00 0.00 0.00 1.28
4239 4668 6.857848 TGTGAGCCCCCATCAAAATATTATA 58.142 36.000 0.00 0.00 0.00 0.98
4240 4669 7.477864 TGTGAGCCCCCATCAAAATATTATAT 58.522 34.615 0.00 0.00 0.00 0.86
4241 4670 7.396907 TGTGAGCCCCCATCAAAATATTATATG 59.603 37.037 0.00 0.00 0.00 1.78
4242 4671 6.380846 TGAGCCCCCATCAAAATATTATATGC 59.619 38.462 0.00 0.00 0.00 3.14
4243 4672 5.662657 AGCCCCCATCAAAATATTATATGCC 59.337 40.000 0.00 0.00 0.00 4.40
4244 4673 5.424895 GCCCCCATCAAAATATTATATGCCA 59.575 40.000 0.00 0.00 0.00 4.92
4245 4674 6.070309 GCCCCCATCAAAATATTATATGCCAA 60.070 38.462 0.00 0.00 0.00 4.52
4246 4675 7.528543 GCCCCCATCAAAATATTATATGCCAAA 60.529 37.037 0.00 0.00 0.00 3.28
4247 4676 8.381636 CCCCCATCAAAATATTATATGCCAAAA 58.618 33.333 0.00 0.00 0.00 2.44
4248 4677 9.962809 CCCCATCAAAATATTATATGCCAAAAT 57.037 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.657368 GACGCTCCAAGCAAAACACG 60.657 55.000 0.00 0.00 42.58 4.49
103 104 7.093992 TGCAAAATAAACATGGTAAAGGCTAC 58.906 34.615 0.00 0.00 0.00 3.58
167 168 8.744568 AATTTTCTAGGGAATTTTTGCAACAA 57.255 26.923 0.00 0.00 0.00 2.83
310 312 4.948341 TCTGCCAAAACAGTACAGTCTA 57.052 40.909 0.00 0.00 38.84 2.59
436 438 9.793252 CTACTGCAGCAAATCACTAAAATTATT 57.207 29.630 15.27 0.00 0.00 1.40
449 451 3.960571 ACCATTCTCTACTGCAGCAAAT 58.039 40.909 15.27 3.81 0.00 2.32
456 458 6.612306 CAAAAACCTTACCATTCTCTACTGC 58.388 40.000 0.00 0.00 0.00 4.40
507 509 5.242838 TCCACACAAAACTCAACAAGAACTT 59.757 36.000 0.00 0.00 0.00 2.66
509 511 5.054390 TCCACACAAAACTCAACAAGAAC 57.946 39.130 0.00 0.00 0.00 3.01
552 554 8.552034 CCTTAATTCTTCTCATATCACGGTTTC 58.448 37.037 0.00 0.00 0.00 2.78
558 560 9.255304 GTGTCTCCTTAATTCTTCTCATATCAC 57.745 37.037 0.00 0.00 0.00 3.06
589 591 1.064463 TGGTCATCCCCAAGCTTGATC 60.064 52.381 28.05 7.61 0.00 2.92
590 592 1.002069 TGGTCATCCCCAAGCTTGAT 58.998 50.000 28.05 10.64 0.00 2.57
606 608 3.979501 ATTATCTTGGGATGCCTTGGT 57.020 42.857 4.35 0.00 33.71 3.67
634 636 6.162777 CCCTAGCTTAGATGCTTGATACTTC 58.837 44.000 0.00 0.00 43.74 3.01
639 641 3.591789 TCCCCTAGCTTAGATGCTTGAT 58.408 45.455 0.00 0.00 43.74 2.57
667 669 3.137360 AGAAGAAAGATGGGATGCCTACC 59.863 47.826 4.35 0.00 0.00 3.18
693 695 9.640963 GCTCAACCGATACTAACTGATAATTAT 57.359 33.333 0.00 0.00 0.00 1.28
694 696 8.086522 GGCTCAACCGATACTAACTGATAATTA 58.913 37.037 0.00 0.00 0.00 1.40
695 697 6.929606 GGCTCAACCGATACTAACTGATAATT 59.070 38.462 0.00 0.00 0.00 1.40
696 698 6.267928 AGGCTCAACCGATACTAACTGATAAT 59.732 38.462 0.00 0.00 46.52 1.28
697 699 5.597182 AGGCTCAACCGATACTAACTGATAA 59.403 40.000 0.00 0.00 46.52 1.75
698 700 5.138276 AGGCTCAACCGATACTAACTGATA 58.862 41.667 0.00 0.00 46.52 2.15
699 701 3.961408 AGGCTCAACCGATACTAACTGAT 59.039 43.478 0.00 0.00 46.52 2.90
700 702 3.362706 AGGCTCAACCGATACTAACTGA 58.637 45.455 0.00 0.00 46.52 3.41
701 703 3.802948 AGGCTCAACCGATACTAACTG 57.197 47.619 0.00 0.00 46.52 3.16
702 704 4.954826 ACTTAGGCTCAACCGATACTAACT 59.045 41.667 0.00 0.00 46.52 2.24
703 705 5.259832 ACTTAGGCTCAACCGATACTAAC 57.740 43.478 0.00 0.00 46.52 2.34
704 706 5.927281 AACTTAGGCTCAACCGATACTAA 57.073 39.130 0.00 0.00 46.52 2.24
705 707 5.927281 AAACTTAGGCTCAACCGATACTA 57.073 39.130 0.00 0.00 46.52 1.82
706 708 4.820894 AAACTTAGGCTCAACCGATACT 57.179 40.909 0.00 0.00 46.52 2.12
707 709 5.410439 TCAAAAACTTAGGCTCAACCGATAC 59.590 40.000 0.00 0.00 46.52 2.24
708 710 5.553123 TCAAAAACTTAGGCTCAACCGATA 58.447 37.500 0.00 0.00 46.52 2.92
709 711 4.394729 TCAAAAACTTAGGCTCAACCGAT 58.605 39.130 0.00 0.00 46.52 4.18
710 712 3.811083 TCAAAAACTTAGGCTCAACCGA 58.189 40.909 0.00 0.00 46.52 4.69
711 713 4.766404 ATCAAAAACTTAGGCTCAACCG 57.234 40.909 0.00 0.00 46.52 4.44
712 714 6.332735 AGAATCAAAAACTTAGGCTCAACC 57.667 37.500 0.00 0.00 39.61 3.77
713 715 7.379797 GTGAAGAATCAAAAACTTAGGCTCAAC 59.620 37.037 0.00 0.00 37.30 3.18
714 716 7.425606 GTGAAGAATCAAAAACTTAGGCTCAA 58.574 34.615 0.00 0.00 37.30 3.02
715 717 6.293407 CGTGAAGAATCAAAAACTTAGGCTCA 60.293 38.462 0.00 0.00 37.30 4.26
716 718 6.080406 CGTGAAGAATCAAAAACTTAGGCTC 58.920 40.000 0.00 0.00 37.30 4.70
717 719 5.531287 ACGTGAAGAATCAAAAACTTAGGCT 59.469 36.000 0.00 0.00 37.30 4.58
718 720 5.625311 CACGTGAAGAATCAAAAACTTAGGC 59.375 40.000 10.90 0.00 37.30 3.93
719 721 6.954944 TCACGTGAAGAATCAAAAACTTAGG 58.045 36.000 17.62 0.00 37.30 2.69
720 722 8.070171 ACATCACGTGAAGAATCAAAAACTTAG 58.930 33.333 26.09 1.89 37.30 2.18
721 723 7.925993 ACATCACGTGAAGAATCAAAAACTTA 58.074 30.769 26.09 0.00 37.30 2.24
722 724 6.795399 ACATCACGTGAAGAATCAAAAACTT 58.205 32.000 26.09 0.01 37.30 2.66
723 725 6.377327 ACATCACGTGAAGAATCAAAAACT 57.623 33.333 26.09 0.47 37.30 2.66
738 740 7.602644 ACATTCTAAGAATAACACACATCACGT 59.397 33.333 0.00 0.00 0.00 4.49
739 741 7.963981 ACATTCTAAGAATAACACACATCACG 58.036 34.615 0.00 0.00 0.00 4.35
740 742 8.935844 TGACATTCTAAGAATAACACACATCAC 58.064 33.333 0.00 0.00 0.00 3.06
741 743 9.671279 ATGACATTCTAAGAATAACACACATCA 57.329 29.630 0.00 0.00 0.00 3.07
781 783 9.593134 ACACTGATTTTATTAAAACAACAAGCA 57.407 25.926 3.78 0.00 32.37 3.91
791 793 8.973378 CGCTTTTCCAACACTGATTTTATTAAA 58.027 29.630 0.00 0.00 0.00 1.52
792 794 8.353684 TCGCTTTTCCAACACTGATTTTATTAA 58.646 29.630 0.00 0.00 0.00 1.40
793 795 7.877003 TCGCTTTTCCAACACTGATTTTATTA 58.123 30.769 0.00 0.00 0.00 0.98
794 796 6.744112 TCGCTTTTCCAACACTGATTTTATT 58.256 32.000 0.00 0.00 0.00 1.40
795 797 6.325919 TCGCTTTTCCAACACTGATTTTAT 57.674 33.333 0.00 0.00 0.00 1.40
796 798 5.759506 TCGCTTTTCCAACACTGATTTTA 57.240 34.783 0.00 0.00 0.00 1.52
797 799 4.647424 TCGCTTTTCCAACACTGATTTT 57.353 36.364 0.00 0.00 0.00 1.82
798 800 4.647424 TTCGCTTTTCCAACACTGATTT 57.353 36.364 0.00 0.00 0.00 2.17
799 801 4.647424 TTTCGCTTTTCCAACACTGATT 57.353 36.364 0.00 0.00 0.00 2.57
800 802 4.853924 ATTTCGCTTTTCCAACACTGAT 57.146 36.364 0.00 0.00 0.00 2.90
801 803 4.647424 AATTTCGCTTTTCCAACACTGA 57.353 36.364 0.00 0.00 0.00 3.41
802 804 4.917415 CCTAATTTCGCTTTTCCAACACTG 59.083 41.667 0.00 0.00 0.00 3.66
803 805 4.558697 GCCTAATTTCGCTTTTCCAACACT 60.559 41.667 0.00 0.00 0.00 3.55
804 806 3.673338 GCCTAATTTCGCTTTTCCAACAC 59.327 43.478 0.00 0.00 0.00 3.32
805 807 3.610585 CGCCTAATTTCGCTTTTCCAACA 60.611 43.478 0.00 0.00 0.00 3.33
816 818 2.470257 CCTAAGCGTACGCCTAATTTCG 59.530 50.000 34.88 18.08 43.17 3.46
921 924 1.016627 ACATCTAGGCGTACGCGTTA 58.983 50.000 36.23 26.32 43.06 3.18
938 941 5.237127 CGCCTCTTTCTATTGCATAATCACA 59.763 40.000 0.00 0.00 0.00 3.58
940 943 5.610398 TCGCCTCTTTCTATTGCATAATCA 58.390 37.500 0.00 0.00 0.00 2.57
1218 1221 1.318158 GGAGGAAGAAGTACGGGCGA 61.318 60.000 0.00 0.00 0.00 5.54
1328 1331 0.680061 GAGGACAAGACACGGGAAGT 59.320 55.000 0.00 0.00 0.00 3.01
1371 1375 4.414956 TCCGATGGGAGGGGCAGT 62.415 66.667 0.00 0.00 37.43 4.40
1871 1881 6.154877 TGACCATTAATGACCATCAGCAAATT 59.845 34.615 17.23 0.00 0.00 1.82
1891 1901 4.225717 TGATGATTCCAGTTGAGATGACCA 59.774 41.667 0.00 0.00 0.00 4.02
1897 1907 7.186570 TGTCTATTGATGATTCCAGTTGAGA 57.813 36.000 0.00 0.00 0.00 3.27
1961 1971 5.661458 CCCTCATTAACTTGTCGTATGAGT 58.339 41.667 0.00 0.00 37.16 3.41
1991 2001 8.812972 TCTTTAACTTCTTCAGGCACTAGATAA 58.187 33.333 0.00 0.00 36.02 1.75
2206 2216 6.582636 ACACAGTTATTCACTTGAAGAGACA 58.417 36.000 0.00 0.00 37.48 3.41
2223 2233 0.308684 CTGATGCGCACAACACAGTT 59.691 50.000 14.90 0.00 0.00 3.16
2280 2290 5.728351 TGTAGCACAAACTTCACTAACAC 57.272 39.130 0.00 0.00 0.00 3.32
2377 2388 4.883585 AGATTACCAGCAACCACATACATG 59.116 41.667 0.00 0.00 0.00 3.21
2469 2488 2.295909 GCTCGATACAGATCCAGAAGCT 59.704 50.000 0.00 0.00 0.00 3.74
2973 3175 4.415881 TTCTCTTCCTGCAACACTAACA 57.584 40.909 0.00 0.00 0.00 2.41
2974 3176 4.378874 GCATTCTCTTCCTGCAACACTAAC 60.379 45.833 0.00 0.00 35.96 2.34
3012 3214 1.142936 CTCCCATCCCACATCATCCA 58.857 55.000 0.00 0.00 0.00 3.41
3305 3507 2.484264 GCTCAACGCTTCCAATACAAGT 59.516 45.455 0.00 0.00 35.14 3.16
3306 3508 2.159517 GGCTCAACGCTTCCAATACAAG 60.160 50.000 0.00 0.00 39.13 3.16
3307 3509 1.810151 GGCTCAACGCTTCCAATACAA 59.190 47.619 0.00 0.00 39.13 2.41
3308 3510 1.271108 TGGCTCAACGCTTCCAATACA 60.271 47.619 0.00 0.00 39.13 2.29
3309 3511 1.130561 GTGGCTCAACGCTTCCAATAC 59.869 52.381 0.00 0.00 39.13 1.89
3310 3512 1.271108 TGTGGCTCAACGCTTCCAATA 60.271 47.619 0.00 0.00 39.13 1.90
3311 3513 0.537143 TGTGGCTCAACGCTTCCAAT 60.537 50.000 0.00 0.00 39.13 3.16
3312 3514 1.153066 TGTGGCTCAACGCTTCCAA 60.153 52.632 0.00 0.00 39.13 3.53
3313 3515 1.891919 GTGTGGCTCAACGCTTCCA 60.892 57.895 0.00 0.00 39.13 3.53
3314 3516 1.444119 TTGTGTGGCTCAACGCTTCC 61.444 55.000 0.00 0.00 39.13 3.46
3315 3517 0.040958 CTTGTGTGGCTCAACGCTTC 60.041 55.000 0.00 0.00 39.13 3.86
3316 3518 0.463654 TCTTGTGTGGCTCAACGCTT 60.464 50.000 0.00 0.00 39.13 4.68
3317 3519 0.250467 ATCTTGTGTGGCTCAACGCT 60.250 50.000 0.00 0.00 39.13 5.07
3318 3520 1.394917 CTATCTTGTGTGGCTCAACGC 59.605 52.381 0.00 0.00 38.13 4.84
3319 3521 2.002586 CCTATCTTGTGTGGCTCAACG 58.997 52.381 0.00 0.00 0.00 4.10
3320 3522 3.003480 GACCTATCTTGTGTGGCTCAAC 58.997 50.000 0.00 0.00 0.00 3.18
3321 3523 2.027192 GGACCTATCTTGTGTGGCTCAA 60.027 50.000 0.00 0.00 0.00 3.02
3322 3524 1.555075 GGACCTATCTTGTGTGGCTCA 59.445 52.381 0.00 0.00 0.00 4.26
3323 3525 1.134371 GGGACCTATCTTGTGTGGCTC 60.134 57.143 0.00 0.00 0.00 4.70
3324 3526 0.912486 GGGACCTATCTTGTGTGGCT 59.088 55.000 0.00 0.00 0.00 4.75
3325 3527 0.618458 TGGGACCTATCTTGTGTGGC 59.382 55.000 0.00 0.00 0.00 5.01
3326 3528 3.054434 TCAATGGGACCTATCTTGTGTGG 60.054 47.826 0.00 0.00 0.00 4.17
3327 3529 4.220693 TCAATGGGACCTATCTTGTGTG 57.779 45.455 0.00 0.00 0.00 3.82
3328 3530 5.667626 ACTATCAATGGGACCTATCTTGTGT 59.332 40.000 0.00 0.00 0.00 3.72
3329 3531 5.994054 CACTATCAATGGGACCTATCTTGTG 59.006 44.000 0.00 0.00 0.00 3.33
3330 3532 5.072329 CCACTATCAATGGGACCTATCTTGT 59.928 44.000 0.00 0.00 33.18 3.16
3331 3533 5.307976 TCCACTATCAATGGGACCTATCTTG 59.692 44.000 0.00 0.00 37.85 3.02
3332 3534 5.308237 GTCCACTATCAATGGGACCTATCTT 59.692 44.000 0.00 0.00 43.14 2.40
3333 3535 4.841246 GTCCACTATCAATGGGACCTATCT 59.159 45.833 0.00 0.00 43.14 1.98
3334 3536 5.153950 GTCCACTATCAATGGGACCTATC 57.846 47.826 0.00 0.00 43.14 2.08
3340 3542 2.167693 GACGTGTCCACTATCAATGGGA 59.832 50.000 0.00 0.00 37.85 4.37
3341 3543 2.550978 GACGTGTCCACTATCAATGGG 58.449 52.381 0.00 0.00 37.85 4.00
3354 3556 8.762426 GTTAATTTAGGATCAATAGGACGTGTC 58.238 37.037 0.00 0.00 0.00 3.67
3355 3557 8.483758 AGTTAATTTAGGATCAATAGGACGTGT 58.516 33.333 0.00 0.00 0.00 4.49
3356 3558 8.888579 AGTTAATTTAGGATCAATAGGACGTG 57.111 34.615 0.00 0.00 0.00 4.49
3357 3559 8.701895 TGAGTTAATTTAGGATCAATAGGACGT 58.298 33.333 0.00 0.00 0.00 4.34
3358 3560 9.542462 TTGAGTTAATTTAGGATCAATAGGACG 57.458 33.333 0.00 0.00 0.00 4.79
3365 3567 9.638239 GCACAATTTGAGTTAATTTAGGATCAA 57.362 29.630 2.79 0.00 0.00 2.57
3366 3568 7.967854 CGCACAATTTGAGTTAATTTAGGATCA 59.032 33.333 2.79 0.00 0.00 2.92
3367 3569 7.968405 ACGCACAATTTGAGTTAATTTAGGATC 59.032 33.333 2.79 0.00 33.93 3.36
3368 3570 7.826690 ACGCACAATTTGAGTTAATTTAGGAT 58.173 30.769 2.79 0.00 33.93 3.24
3369 3571 7.174253 AGACGCACAATTTGAGTTAATTTAGGA 59.826 33.333 2.79 0.00 38.54 2.94
3370 3572 7.271223 CAGACGCACAATTTGAGTTAATTTAGG 59.729 37.037 2.79 0.00 38.54 2.69
3371 3573 7.803189 ACAGACGCACAATTTGAGTTAATTTAG 59.197 33.333 2.79 0.00 38.54 1.85
3372 3574 7.589587 CACAGACGCACAATTTGAGTTAATTTA 59.410 33.333 2.79 0.00 38.54 1.40
3373 3575 6.417635 CACAGACGCACAATTTGAGTTAATTT 59.582 34.615 2.79 0.00 38.54 1.82
3374 3576 5.914635 CACAGACGCACAATTTGAGTTAATT 59.085 36.000 2.79 0.00 38.54 1.40
3375 3577 5.008613 ACACAGACGCACAATTTGAGTTAAT 59.991 36.000 2.79 0.00 38.54 1.40
3376 3578 4.334203 ACACAGACGCACAATTTGAGTTAA 59.666 37.500 2.79 0.00 38.54 2.01
3377 3579 3.874543 ACACAGACGCACAATTTGAGTTA 59.125 39.130 2.79 0.00 38.54 2.24
3378 3580 2.682856 ACACAGACGCACAATTTGAGTT 59.317 40.909 2.79 0.00 38.54 3.01
3379 3581 2.032054 CACACAGACGCACAATTTGAGT 59.968 45.455 2.79 0.32 41.61 3.41
3380 3582 2.602933 CCACACAGACGCACAATTTGAG 60.603 50.000 2.79 0.00 0.00 3.02
3381 3583 1.333308 CCACACAGACGCACAATTTGA 59.667 47.619 2.79 0.00 0.00 2.69
3382 3584 1.333308 TCCACACAGACGCACAATTTG 59.667 47.619 0.00 0.00 0.00 2.32
3383 3585 1.674359 TCCACACAGACGCACAATTT 58.326 45.000 0.00 0.00 0.00 1.82
3384 3586 1.333619 GTTCCACACAGACGCACAATT 59.666 47.619 0.00 0.00 0.00 2.32
3385 3587 0.944386 GTTCCACACAGACGCACAAT 59.056 50.000 0.00 0.00 0.00 2.71
3386 3588 0.107897 AGTTCCACACAGACGCACAA 60.108 50.000 0.00 0.00 0.00 3.33
3387 3589 0.747852 TAGTTCCACACAGACGCACA 59.252 50.000 0.00 0.00 0.00 4.57
3388 3590 1.993370 GATAGTTCCACACAGACGCAC 59.007 52.381 0.00 0.00 0.00 5.34
3389 3591 1.067142 GGATAGTTCCACACAGACGCA 60.067 52.381 0.00 0.00 42.12 5.24
3390 3592 1.641577 GGATAGTTCCACACAGACGC 58.358 55.000 0.00 0.00 42.12 5.19
3391 3593 1.825474 AGGGATAGTTCCACACAGACG 59.175 52.381 0.00 0.00 44.60 4.18
3392 3594 2.567615 ACAGGGATAGTTCCACACAGAC 59.432 50.000 0.00 0.00 44.60 3.51
3393 3595 2.902608 ACAGGGATAGTTCCACACAGA 58.097 47.619 0.00 0.00 44.60 3.41
3394 3596 3.338249 CAACAGGGATAGTTCCACACAG 58.662 50.000 0.00 0.00 44.60 3.66
3395 3597 2.039746 CCAACAGGGATAGTTCCACACA 59.960 50.000 0.00 0.00 44.60 3.72
3396 3598 2.618045 CCCAACAGGGATAGTTCCACAC 60.618 54.545 0.00 0.00 46.20 3.82
3397 3599 1.633432 CCCAACAGGGATAGTTCCACA 59.367 52.381 0.00 0.00 46.20 4.17
3398 3600 1.913419 TCCCAACAGGGATAGTTCCAC 59.087 52.381 0.00 0.00 46.79 4.02
3399 3601 2.352561 TCCCAACAGGGATAGTTCCA 57.647 50.000 0.00 0.00 46.79 3.53
3408 3610 1.295020 TATCCCAAGTCCCAACAGGG 58.705 55.000 0.00 0.00 44.52 4.45
3409 3611 2.308866 ACTTATCCCAAGTCCCAACAGG 59.691 50.000 0.00 0.00 0.00 4.00
3410 3612 3.264450 AGACTTATCCCAAGTCCCAACAG 59.736 47.826 12.32 0.00 45.82 3.16
3411 3613 3.256704 AGACTTATCCCAAGTCCCAACA 58.743 45.455 12.32 0.00 45.82 3.33
3412 3614 4.302559 AAGACTTATCCCAAGTCCCAAC 57.697 45.455 12.32 0.00 45.82 3.77
3413 3615 4.352595 TGAAAGACTTATCCCAAGTCCCAA 59.647 41.667 12.32 0.00 45.82 4.12
3414 3616 3.913799 TGAAAGACTTATCCCAAGTCCCA 59.086 43.478 12.32 6.87 45.82 4.37
3415 3617 4.569719 TGAAAGACTTATCCCAAGTCCC 57.430 45.455 12.32 4.80 45.82 4.46
3416 3618 8.575649 TTATTTGAAAGACTTATCCCAAGTCC 57.424 34.615 12.32 0.66 45.82 3.85
3417 3619 9.449719 TCTTATTTGAAAGACTTATCCCAAGTC 57.550 33.333 8.72 8.72 45.21 3.01
3418 3620 9.981460 ATCTTATTTGAAAGACTTATCCCAAGT 57.019 29.630 0.00 0.00 38.28 3.16
3440 3642 9.702253 TCACAAGTACTCTATTCCTAGAATCTT 57.298 33.333 0.00 0.00 33.59 2.40
3441 3643 9.702253 TTCACAAGTACTCTATTCCTAGAATCT 57.298 33.333 0.00 0.00 33.59 2.40
3442 3644 9.738832 GTTCACAAGTACTCTATTCCTAGAATC 57.261 37.037 0.00 0.00 33.59 2.52
3443 3645 9.482175 AGTTCACAAGTACTCTATTCCTAGAAT 57.518 33.333 0.00 0.00 33.59 2.40
3444 3646 8.880991 AGTTCACAAGTACTCTATTCCTAGAA 57.119 34.615 0.00 0.00 33.59 2.10
3445 3647 8.740906 CAAGTTCACAAGTACTCTATTCCTAGA 58.259 37.037 0.00 0.00 32.96 2.43
3446 3648 8.524487 ACAAGTTCACAAGTACTCTATTCCTAG 58.476 37.037 0.00 0.00 0.00 3.02
3447 3649 8.304596 CACAAGTTCACAAGTACTCTATTCCTA 58.695 37.037 0.00 0.00 0.00 2.94
3448 3650 7.155328 CACAAGTTCACAAGTACTCTATTCCT 58.845 38.462 0.00 0.00 0.00 3.36
3449 3651 6.128526 GCACAAGTTCACAAGTACTCTATTCC 60.129 42.308 0.00 0.00 0.00 3.01
3450 3652 6.647067 AGCACAAGTTCACAAGTACTCTATTC 59.353 38.462 0.00 0.00 0.00 1.75
3451 3653 6.525629 AGCACAAGTTCACAAGTACTCTATT 58.474 36.000 0.00 0.00 0.00 1.73
3452 3654 6.102897 AGCACAAGTTCACAAGTACTCTAT 57.897 37.500 0.00 0.00 0.00 1.98
3453 3655 5.068591 TGAGCACAAGTTCACAAGTACTCTA 59.931 40.000 0.00 0.00 29.40 2.43
3454 3656 4.141937 TGAGCACAAGTTCACAAGTACTCT 60.142 41.667 0.00 0.00 29.40 3.24
3455 3657 4.119862 TGAGCACAAGTTCACAAGTACTC 58.880 43.478 0.00 0.00 29.40 2.59
3456 3658 4.137116 TGAGCACAAGTTCACAAGTACT 57.863 40.909 0.00 0.00 29.40 2.73
3457 3659 6.539649 TTATGAGCACAAGTTCACAAGTAC 57.460 37.500 0.00 0.00 37.82 2.73
3458 3660 7.744087 AATTATGAGCACAAGTTCACAAGTA 57.256 32.000 0.00 0.00 37.82 2.24
3459 3661 6.639632 AATTATGAGCACAAGTTCACAAGT 57.360 33.333 0.00 0.00 37.82 3.16
3464 3666 9.734620 GCATTATAAATTATGAGCACAAGTTCA 57.265 29.630 0.00 0.00 39.38 3.18
3465 3667 9.956720 AGCATTATAAATTATGAGCACAAGTTC 57.043 29.630 0.00 0.00 0.00 3.01
3506 3932 2.557924 TGAGGCAAAAATCACGCAAGAT 59.442 40.909 0.00 0.00 43.62 2.40
3597 4024 2.073816 GGGAGTACATCACAACAACGG 58.926 52.381 0.00 0.00 0.00 4.44
3742 4171 3.561313 GGAGGACAATTTTGTGGCTAGGA 60.561 47.826 0.00 0.00 42.43 2.94
3751 4180 2.163613 GCGGGTTAGGAGGACAATTTTG 59.836 50.000 0.00 0.00 0.00 2.44
3913 4342 4.082125 CCTGGCAACTATTTGAGGACTTT 58.918 43.478 0.00 0.00 34.24 2.66
3914 4343 3.562176 CCCTGGCAACTATTTGAGGACTT 60.562 47.826 0.00 0.00 34.24 3.01
3915 4344 2.025887 CCCTGGCAACTATTTGAGGACT 60.026 50.000 0.00 0.00 34.24 3.85
3916 4345 2.026262 TCCCTGGCAACTATTTGAGGAC 60.026 50.000 0.00 0.00 34.24 3.85
3917 4346 2.239654 CTCCCTGGCAACTATTTGAGGA 59.760 50.000 0.00 0.00 34.24 3.71
3918 4347 2.648059 CTCCCTGGCAACTATTTGAGG 58.352 52.381 0.00 0.00 34.24 3.86
3919 4348 2.648059 CCTCCCTGGCAACTATTTGAG 58.352 52.381 0.00 0.00 34.24 3.02
3920 4349 2.806945 CCTCCCTGGCAACTATTTGA 57.193 50.000 0.00 0.00 34.24 2.69
3939 4368 2.006888 TGTGAATGCCGCTTAGTTAGC 58.993 47.619 0.00 0.00 46.83 3.09
3940 4369 3.248602 GGATGTGAATGCCGCTTAGTTAG 59.751 47.826 0.00 0.00 0.00 2.34
3941 4370 3.202906 GGATGTGAATGCCGCTTAGTTA 58.797 45.455 0.00 0.00 0.00 2.24
3942 4371 2.017049 GGATGTGAATGCCGCTTAGTT 58.983 47.619 0.00 0.00 0.00 2.24
3943 4372 1.668419 GGATGTGAATGCCGCTTAGT 58.332 50.000 0.00 0.00 0.00 2.24
3944 4373 0.947244 GGGATGTGAATGCCGCTTAG 59.053 55.000 0.00 0.00 0.00 2.18
3945 4374 3.094386 GGGATGTGAATGCCGCTTA 57.906 52.632 0.00 0.00 0.00 3.09
3946 4375 3.924507 GGGATGTGAATGCCGCTT 58.075 55.556 0.00 0.00 0.00 4.68
3950 4379 0.451783 GTTGACGGGATGTGAATGCC 59.548 55.000 0.00 0.00 0.00 4.40
3951 4380 0.096976 CGTTGACGGGATGTGAATGC 59.903 55.000 0.00 0.00 35.37 3.56
3952 4381 1.720805 TCGTTGACGGGATGTGAATG 58.279 50.000 3.48 0.00 40.29 2.67
3953 4382 2.346803 CTTCGTTGACGGGATGTGAAT 58.653 47.619 3.48 0.00 40.29 2.57
3954 4383 1.790755 CTTCGTTGACGGGATGTGAA 58.209 50.000 3.48 0.00 40.29 3.18
3955 4384 0.669318 GCTTCGTTGACGGGATGTGA 60.669 55.000 3.48 0.00 40.29 3.58
3956 4385 0.670546 AGCTTCGTTGACGGGATGTG 60.671 55.000 3.48 0.00 40.29 3.21
3957 4386 0.389948 GAGCTTCGTTGACGGGATGT 60.390 55.000 3.48 0.00 40.29 3.06
3958 4387 0.108615 AGAGCTTCGTTGACGGGATG 60.109 55.000 3.48 0.00 40.29 3.51
3959 4388 0.608640 AAGAGCTTCGTTGACGGGAT 59.391 50.000 3.48 0.00 40.29 3.85
3960 4389 0.391597 AAAGAGCTTCGTTGACGGGA 59.608 50.000 3.48 0.00 40.29 5.14
3961 4390 1.194772 GAAAAGAGCTTCGTTGACGGG 59.805 52.381 3.48 0.00 40.29 5.28
3962 4391 2.135933 AGAAAAGAGCTTCGTTGACGG 58.864 47.619 3.48 0.00 40.29 4.79
3963 4392 3.181552 CGTAGAAAAGAGCTTCGTTGACG 60.182 47.826 0.00 0.00 41.45 4.35
3964 4393 3.121445 CCGTAGAAAAGAGCTTCGTTGAC 59.879 47.826 0.00 0.00 0.00 3.18
3965 4394 3.005050 TCCGTAGAAAAGAGCTTCGTTGA 59.995 43.478 0.00 0.00 0.00 3.18
3966 4395 3.314553 TCCGTAGAAAAGAGCTTCGTTG 58.685 45.455 0.00 0.00 0.00 4.10
3967 4396 3.655276 TCCGTAGAAAAGAGCTTCGTT 57.345 42.857 0.00 0.00 0.00 3.85
3968 4397 3.655276 TTCCGTAGAAAAGAGCTTCGT 57.345 42.857 0.00 0.00 0.00 3.85
3969 4398 4.725169 GCAATTCCGTAGAAAAGAGCTTCG 60.725 45.833 0.00 0.00 35.09 3.79
3970 4399 4.393371 AGCAATTCCGTAGAAAAGAGCTTC 59.607 41.667 0.00 0.00 35.09 3.86
3971 4400 4.327680 AGCAATTCCGTAGAAAAGAGCTT 58.672 39.130 0.00 0.00 35.09 3.74
3972 4401 3.935828 GAGCAATTCCGTAGAAAAGAGCT 59.064 43.478 0.00 0.00 35.09 4.09
3973 4402 3.935828 AGAGCAATTCCGTAGAAAAGAGC 59.064 43.478 0.00 0.00 35.09 4.09
3974 4403 6.254589 CACTAGAGCAATTCCGTAGAAAAGAG 59.745 42.308 0.00 0.00 35.09 2.85
3975 4404 6.100004 CACTAGAGCAATTCCGTAGAAAAGA 58.900 40.000 0.00 0.00 35.09 2.52
3976 4405 5.220491 GCACTAGAGCAATTCCGTAGAAAAG 60.220 44.000 7.33 0.00 35.09 2.27
3977 4406 4.630069 GCACTAGAGCAATTCCGTAGAAAA 59.370 41.667 7.33 0.00 35.09 2.29
3978 4407 4.081642 AGCACTAGAGCAATTCCGTAGAAA 60.082 41.667 14.80 0.00 34.28 2.52
3979 4408 3.447586 AGCACTAGAGCAATTCCGTAGAA 59.552 43.478 14.80 0.00 36.85 2.10
3980 4409 3.024547 AGCACTAGAGCAATTCCGTAGA 58.975 45.455 14.80 0.00 36.85 2.59
3981 4410 3.444703 AGCACTAGAGCAATTCCGTAG 57.555 47.619 14.80 0.00 36.85 3.51
3982 4411 3.194755 TGAAGCACTAGAGCAATTCCGTA 59.805 43.478 14.80 0.00 36.85 4.02
3983 4412 2.028112 TGAAGCACTAGAGCAATTCCGT 60.028 45.455 14.80 0.00 36.85 4.69
3984 4413 2.349886 GTGAAGCACTAGAGCAATTCCG 59.650 50.000 14.80 0.00 36.85 4.30
3985 4414 3.604582 AGTGAAGCACTAGAGCAATTCC 58.395 45.455 14.80 5.15 43.46 3.01
3986 4415 6.917217 ATAAGTGAAGCACTAGAGCAATTC 57.083 37.500 14.80 10.42 44.62 2.17
3987 4416 7.659390 GGATATAAGTGAAGCACTAGAGCAATT 59.341 37.037 14.80 0.58 44.62 2.32
3988 4417 7.016072 AGGATATAAGTGAAGCACTAGAGCAAT 59.984 37.037 14.80 2.59 44.62 3.56
3989 4418 6.325028 AGGATATAAGTGAAGCACTAGAGCAA 59.675 38.462 14.80 0.00 44.62 3.91
3990 4419 5.835819 AGGATATAAGTGAAGCACTAGAGCA 59.164 40.000 14.80 0.00 44.62 4.26
3991 4420 6.339587 AGGATATAAGTGAAGCACTAGAGC 57.660 41.667 3.68 3.68 44.62 4.09
4028 4457 9.642327 CCAACTTCATGACATTCAATTTATTCA 57.358 29.630 0.00 0.00 0.00 2.57
4029 4458 9.859427 TCCAACTTCATGACATTCAATTTATTC 57.141 29.630 0.00 0.00 0.00 1.75
4032 4461 9.859427 GATTCCAACTTCATGACATTCAATTTA 57.141 29.630 0.00 0.00 0.00 1.40
4033 4462 8.369424 TGATTCCAACTTCATGACATTCAATTT 58.631 29.630 0.00 0.00 0.00 1.82
4034 4463 7.898918 TGATTCCAACTTCATGACATTCAATT 58.101 30.769 0.00 0.00 0.00 2.32
4035 4464 7.470935 TGATTCCAACTTCATGACATTCAAT 57.529 32.000 0.00 0.00 0.00 2.57
4036 4465 6.897706 TGATTCCAACTTCATGACATTCAA 57.102 33.333 0.00 0.00 0.00 2.69
4037 4466 8.756486 ATATGATTCCAACTTCATGACATTCA 57.244 30.769 0.00 0.00 34.52 2.57
4038 4467 8.843262 TGATATGATTCCAACTTCATGACATTC 58.157 33.333 0.00 0.00 34.52 2.67
4039 4468 8.756486 TGATATGATTCCAACTTCATGACATT 57.244 30.769 0.00 0.00 34.52 2.71
4040 4469 8.793592 CATGATATGATTCCAACTTCATGACAT 58.206 33.333 0.00 0.00 38.20 3.06
4041 4470 7.255346 GCATGATATGATTCCAACTTCATGACA 60.255 37.037 12.71 0.00 38.20 3.58
4042 4471 7.082602 GCATGATATGATTCCAACTTCATGAC 58.917 38.462 12.71 2.70 38.20 3.06
4043 4472 6.208007 GGCATGATATGATTCCAACTTCATGA 59.792 38.462 12.71 0.00 38.20 3.07
4044 4473 6.208797 AGGCATGATATGATTCCAACTTCATG 59.791 38.462 0.00 0.00 38.55 3.07
4045 4474 6.312529 AGGCATGATATGATTCCAACTTCAT 58.687 36.000 0.00 0.00 36.57 2.57
4046 4475 5.698104 AGGCATGATATGATTCCAACTTCA 58.302 37.500 0.00 0.00 0.00 3.02
4047 4476 6.939163 ACTAGGCATGATATGATTCCAACTTC 59.061 38.462 0.00 0.00 0.00 3.01
4048 4477 6.713903 CACTAGGCATGATATGATTCCAACTT 59.286 38.462 0.00 0.00 0.00 2.66
4049 4478 6.236409 CACTAGGCATGATATGATTCCAACT 58.764 40.000 0.00 0.00 0.00 3.16
4050 4479 5.413833 CCACTAGGCATGATATGATTCCAAC 59.586 44.000 0.00 0.00 0.00 3.77
4051 4480 5.073554 ACCACTAGGCATGATATGATTCCAA 59.926 40.000 0.00 0.00 39.06 3.53
4052 4481 4.598807 ACCACTAGGCATGATATGATTCCA 59.401 41.667 0.00 0.00 39.06 3.53
4053 4482 5.171339 ACCACTAGGCATGATATGATTCC 57.829 43.478 0.00 0.00 39.06 3.01
4054 4483 5.814705 GCTACCACTAGGCATGATATGATTC 59.185 44.000 0.00 0.00 39.06 2.52
4055 4484 5.486775 AGCTACCACTAGGCATGATATGATT 59.513 40.000 0.00 0.00 39.06 2.57
4056 4485 5.028802 AGCTACCACTAGGCATGATATGAT 58.971 41.667 0.00 0.00 39.06 2.45
4057 4486 4.420206 AGCTACCACTAGGCATGATATGA 58.580 43.478 0.00 0.00 39.06 2.15
4058 4487 4.815533 AGCTACCACTAGGCATGATATG 57.184 45.455 0.00 0.00 39.06 1.78
4059 4488 4.840680 TGAAGCTACCACTAGGCATGATAT 59.159 41.667 0.00 0.00 39.06 1.63
4060 4489 4.039245 GTGAAGCTACCACTAGGCATGATA 59.961 45.833 10.83 0.00 39.06 2.15
4061 4490 3.041211 TGAAGCTACCACTAGGCATGAT 58.959 45.455 0.00 0.00 39.06 2.45
4062 4491 2.168521 GTGAAGCTACCACTAGGCATGA 59.831 50.000 10.83 0.00 39.06 3.07
4063 4492 2.093500 TGTGAAGCTACCACTAGGCATG 60.093 50.000 16.87 0.00 39.06 4.06
4064 4493 2.187958 TGTGAAGCTACCACTAGGCAT 58.812 47.619 16.87 0.00 39.06 4.40
4065 4494 1.639722 TGTGAAGCTACCACTAGGCA 58.360 50.000 16.87 0.00 39.06 4.75
4066 4495 2.939103 CAATGTGAAGCTACCACTAGGC 59.061 50.000 16.87 0.00 39.06 3.93
4067 4496 3.535561 CCAATGTGAAGCTACCACTAGG 58.464 50.000 16.87 12.61 42.21 3.02
4068 4497 3.055094 ACCCAATGTGAAGCTACCACTAG 60.055 47.826 16.87 8.83 35.66 2.57
4069 4498 2.910319 ACCCAATGTGAAGCTACCACTA 59.090 45.455 16.87 7.06 35.66 2.74
4070 4499 1.705186 ACCCAATGTGAAGCTACCACT 59.295 47.619 16.87 3.99 35.66 4.00
4071 4500 2.200373 ACCCAATGTGAAGCTACCAC 57.800 50.000 11.10 11.10 35.23 4.16
4072 4501 2.969821 AACCCAATGTGAAGCTACCA 57.030 45.000 0.00 0.00 0.00 3.25
4073 4502 5.715434 TTTAAACCCAATGTGAAGCTACC 57.285 39.130 0.00 0.00 0.00 3.18
4074 4503 7.169140 CACTTTTTAAACCCAATGTGAAGCTAC 59.831 37.037 0.00 0.00 32.42 3.58
4075 4504 7.068839 TCACTTTTTAAACCCAATGTGAAGCTA 59.931 33.333 0.00 0.00 35.35 3.32
4076 4505 6.048509 CACTTTTTAAACCCAATGTGAAGCT 58.951 36.000 0.00 0.00 32.42 3.74
4077 4506 6.045955 TCACTTTTTAAACCCAATGTGAAGC 58.954 36.000 4.66 0.00 35.35 3.86
4078 4507 8.661352 ATTCACTTTTTAAACCCAATGTGAAG 57.339 30.769 17.17 6.93 44.08 3.02
4079 4508 8.482128 AGATTCACTTTTTAAACCCAATGTGAA 58.518 29.630 15.64 15.64 44.54 3.18
4080 4509 8.017418 AGATTCACTTTTTAAACCCAATGTGA 57.983 30.769 0.00 0.00 36.06 3.58
4081 4510 8.661352 AAGATTCACTTTTTAAACCCAATGTG 57.339 30.769 0.00 0.00 34.94 3.21
4096 4525 4.889409 TGTCAAGCCTCAAAAGATTCACTT 59.111 37.500 0.00 0.00 40.98 3.16
4097 4526 4.464008 TGTCAAGCCTCAAAAGATTCACT 58.536 39.130 0.00 0.00 0.00 3.41
4098 4527 4.836125 TGTCAAGCCTCAAAAGATTCAC 57.164 40.909 0.00 0.00 0.00 3.18
4099 4528 5.535783 TGATTGTCAAGCCTCAAAAGATTCA 59.464 36.000 0.00 0.00 0.00 2.57
4100 4529 5.860716 GTGATTGTCAAGCCTCAAAAGATTC 59.139 40.000 0.00 0.00 0.00 2.52
4101 4530 5.302568 TGTGATTGTCAAGCCTCAAAAGATT 59.697 36.000 0.00 0.00 0.00 2.40
4102 4531 4.828939 TGTGATTGTCAAGCCTCAAAAGAT 59.171 37.500 0.00 0.00 0.00 2.40
4103 4532 4.206375 TGTGATTGTCAAGCCTCAAAAGA 58.794 39.130 0.00 0.00 0.00 2.52
4104 4533 4.572985 TGTGATTGTCAAGCCTCAAAAG 57.427 40.909 0.00 0.00 0.00 2.27
4105 4534 4.998671 TTGTGATTGTCAAGCCTCAAAA 57.001 36.364 0.00 0.00 0.00 2.44
4106 4535 6.839124 ATATTGTGATTGTCAAGCCTCAAA 57.161 33.333 10.81 0.00 0.00 2.69
4107 4536 6.350361 CCAATATTGTGATTGTCAAGCCTCAA 60.350 38.462 14.25 9.70 35.42 3.02
4108 4537 5.125900 CCAATATTGTGATTGTCAAGCCTCA 59.874 40.000 14.25 0.00 35.42 3.86
4109 4538 5.126061 ACCAATATTGTGATTGTCAAGCCTC 59.874 40.000 14.25 0.00 35.42 4.70
4110 4539 5.018809 ACCAATATTGTGATTGTCAAGCCT 58.981 37.500 14.25 0.00 35.42 4.58
4111 4540 5.105797 TGACCAATATTGTGATTGTCAAGCC 60.106 40.000 17.06 0.00 35.42 4.35
4112 4541 5.953183 TGACCAATATTGTGATTGTCAAGC 58.047 37.500 17.06 0.00 35.42 4.01
4116 4545 9.831737 GCTTATATGACCAATATTGTGATTGTC 57.168 33.333 14.25 13.14 35.42 3.18
4117 4546 9.353431 TGCTTATATGACCAATATTGTGATTGT 57.647 29.630 14.25 4.50 35.42 2.71
4124 4553 9.333497 CGTGAATTGCTTATATGACCAATATTG 57.667 33.333 8.58 8.58 33.35 1.90
4125 4554 9.283768 TCGTGAATTGCTTATATGACCAATATT 57.716 29.630 0.00 0.00 33.35 1.28
4126 4555 8.846943 TCGTGAATTGCTTATATGACCAATAT 57.153 30.769 0.00 0.00 35.55 1.28
4127 4556 8.669946 TTCGTGAATTGCTTATATGACCAATA 57.330 30.769 0.00 0.00 0.00 1.90
4128 4557 7.566760 TTCGTGAATTGCTTATATGACCAAT 57.433 32.000 0.00 0.00 0.00 3.16
4129 4558 6.993786 TTCGTGAATTGCTTATATGACCAA 57.006 33.333 0.00 0.00 0.00 3.67
4130 4559 8.669946 TTATTCGTGAATTGCTTATATGACCA 57.330 30.769 0.00 0.00 32.50 4.02
4158 4587 7.550906 GCATGTGAAAGTTCTCTTCCTTATACT 59.449 37.037 0.00 0.00 32.90 2.12
4159 4588 7.334421 TGCATGTGAAAGTTCTCTTCCTTATAC 59.666 37.037 0.00 0.00 32.90 1.47
4160 4589 7.394016 TGCATGTGAAAGTTCTCTTCCTTATA 58.606 34.615 0.00 0.00 32.90 0.98
4161 4590 6.240894 TGCATGTGAAAGTTCTCTTCCTTAT 58.759 36.000 0.00 0.00 32.90 1.73
4162 4591 5.620206 TGCATGTGAAAGTTCTCTTCCTTA 58.380 37.500 0.00 0.00 32.90 2.69
4163 4592 4.464008 TGCATGTGAAAGTTCTCTTCCTT 58.536 39.130 0.00 0.00 32.90 3.36
4164 4593 4.090761 TGCATGTGAAAGTTCTCTTCCT 57.909 40.909 0.00 0.00 32.90 3.36
4165 4594 4.836125 TTGCATGTGAAAGTTCTCTTCC 57.164 40.909 0.00 0.00 32.90 3.46
4166 4595 7.324616 GTGTATTTGCATGTGAAAGTTCTCTTC 59.675 37.037 0.00 0.00 32.90 2.87
4167 4596 7.013655 AGTGTATTTGCATGTGAAAGTTCTCTT 59.986 33.333 0.00 0.00 35.14 2.85
4168 4597 6.488006 AGTGTATTTGCATGTGAAAGTTCTCT 59.512 34.615 0.00 0.00 0.00 3.10
4169 4598 6.672147 AGTGTATTTGCATGTGAAAGTTCTC 58.328 36.000 0.00 0.00 0.00 2.87
4170 4599 6.639632 AGTGTATTTGCATGTGAAAGTTCT 57.360 33.333 0.00 0.00 0.00 3.01
4171 4600 8.236586 TGATAGTGTATTTGCATGTGAAAGTTC 58.763 33.333 0.00 0.00 0.00 3.01
4172 4601 8.109705 TGATAGTGTATTTGCATGTGAAAGTT 57.890 30.769 0.00 0.00 0.00 2.66
4173 4602 7.686438 TGATAGTGTATTTGCATGTGAAAGT 57.314 32.000 0.00 0.00 0.00 2.66
4174 4603 7.646526 CCATGATAGTGTATTTGCATGTGAAAG 59.353 37.037 0.00 0.00 33.22 2.62
4175 4604 7.338957 TCCATGATAGTGTATTTGCATGTGAAA 59.661 33.333 0.00 0.00 33.22 2.69
4176 4605 6.827762 TCCATGATAGTGTATTTGCATGTGAA 59.172 34.615 0.00 0.00 33.22 3.18
4177 4606 6.355747 TCCATGATAGTGTATTTGCATGTGA 58.644 36.000 0.00 0.00 33.22 3.58
4178 4607 6.622833 TCCATGATAGTGTATTTGCATGTG 57.377 37.500 0.00 0.00 33.22 3.21
4179 4608 7.643569 TTTCCATGATAGTGTATTTGCATGT 57.356 32.000 0.00 0.00 33.22 3.21
4180 4609 8.573885 AGATTTCCATGATAGTGTATTTGCATG 58.426 33.333 0.00 0.00 34.47 4.06
4181 4610 8.701908 AGATTTCCATGATAGTGTATTTGCAT 57.298 30.769 0.00 0.00 0.00 3.96
4182 4611 8.523915 AAGATTTCCATGATAGTGTATTTGCA 57.476 30.769 0.00 0.00 0.00 4.08
4183 4612 9.807649 AAAAGATTTCCATGATAGTGTATTTGC 57.192 29.630 0.00 0.00 0.00 3.68
4185 4614 9.807649 GCAAAAGATTTCCATGATAGTGTATTT 57.192 29.630 0.00 0.00 0.00 1.40
4186 4615 8.131100 CGCAAAAGATTTCCATGATAGTGTATT 58.869 33.333 0.00 0.00 0.00 1.89
4187 4616 7.498900 TCGCAAAAGATTTCCATGATAGTGTAT 59.501 33.333 0.00 0.00 0.00 2.29
4188 4617 6.821160 TCGCAAAAGATTTCCATGATAGTGTA 59.179 34.615 0.00 0.00 0.00 2.90
4189 4618 5.647658 TCGCAAAAGATTTCCATGATAGTGT 59.352 36.000 0.00 0.00 0.00 3.55
4190 4619 6.122850 TCGCAAAAGATTTCCATGATAGTG 57.877 37.500 0.00 0.00 0.00 2.74
4191 4620 6.949352 ATCGCAAAAGATTTCCATGATAGT 57.051 33.333 0.00 0.00 0.00 2.12
4192 4621 7.166970 CACAATCGCAAAAGATTTCCATGATAG 59.833 37.037 0.00 0.00 38.66 2.08
4193 4622 6.974048 CACAATCGCAAAAGATTTCCATGATA 59.026 34.615 0.00 0.00 38.66 2.15
4194 4623 5.808540 CACAATCGCAAAAGATTTCCATGAT 59.191 36.000 0.00 0.00 38.66 2.45
4195 4624 5.048154 TCACAATCGCAAAAGATTTCCATGA 60.048 36.000 0.00 0.00 38.66 3.07
4196 4625 5.162794 TCACAATCGCAAAAGATTTCCATG 58.837 37.500 0.00 0.00 38.66 3.66
4197 4626 5.389859 TCACAATCGCAAAAGATTTCCAT 57.610 34.783 0.00 0.00 38.66 3.41
4198 4627 4.797471 CTCACAATCGCAAAAGATTTCCA 58.203 39.130 0.00 0.00 38.66 3.53
4199 4628 3.609807 GCTCACAATCGCAAAAGATTTCC 59.390 43.478 0.00 0.00 38.66 3.13
4200 4629 3.609807 GGCTCACAATCGCAAAAGATTTC 59.390 43.478 0.00 0.00 38.66 2.17
4201 4630 3.578688 GGCTCACAATCGCAAAAGATTT 58.421 40.909 0.00 0.00 38.66 2.17
4202 4631 2.094545 GGGCTCACAATCGCAAAAGATT 60.095 45.455 0.00 0.00 41.12 2.40
4203 4632 1.474077 GGGCTCACAATCGCAAAAGAT 59.526 47.619 0.00 0.00 0.00 2.40
4204 4633 0.881118 GGGCTCACAATCGCAAAAGA 59.119 50.000 0.00 0.00 0.00 2.52
4205 4634 0.109132 GGGGCTCACAATCGCAAAAG 60.109 55.000 0.00 0.00 0.00 2.27
4206 4635 1.531739 GGGGGCTCACAATCGCAAAA 61.532 55.000 0.00 0.00 0.00 2.44
4207 4636 1.976474 GGGGGCTCACAATCGCAAA 60.976 57.895 0.00 0.00 0.00 3.68
4208 4637 2.361104 GGGGGCTCACAATCGCAA 60.361 61.111 0.00 0.00 0.00 4.85
4209 4638 2.891941 GATGGGGGCTCACAATCGCA 62.892 60.000 0.00 0.00 0.00 5.10
4210 4639 2.124151 ATGGGGGCTCACAATCGC 60.124 61.111 0.00 0.00 0.00 4.58
4211 4640 0.394216 TTGATGGGGGCTCACAATCG 60.394 55.000 0.00 0.00 0.00 3.34
4212 4641 1.851304 TTTGATGGGGGCTCACAATC 58.149 50.000 0.00 0.00 0.00 2.67
4213 4642 2.323999 TTTTGATGGGGGCTCACAAT 57.676 45.000 0.00 0.00 0.00 2.71
4214 4643 2.323999 ATTTTGATGGGGGCTCACAA 57.676 45.000 0.00 0.00 0.00 3.33
4215 4644 3.686227 ATATTTTGATGGGGGCTCACA 57.314 42.857 0.00 0.00 0.00 3.58
4216 4645 7.631377 GCATATAATATTTTGATGGGGGCTCAC 60.631 40.741 0.00 0.00 0.00 3.51
4217 4646 6.380846 GCATATAATATTTTGATGGGGGCTCA 59.619 38.462 0.00 0.00 0.00 4.26
4218 4647 6.183360 GGCATATAATATTTTGATGGGGGCTC 60.183 42.308 0.00 0.00 0.00 4.70
4219 4648 5.662657 GGCATATAATATTTTGATGGGGGCT 59.337 40.000 0.00 0.00 0.00 5.19
4220 4649 5.424895 TGGCATATAATATTTTGATGGGGGC 59.575 40.000 0.00 0.00 0.00 5.80
4221 4650 7.493499 TTGGCATATAATATTTTGATGGGGG 57.507 36.000 0.00 0.00 0.00 5.40
4222 4651 9.962809 ATTTTGGCATATAATATTTTGATGGGG 57.037 29.630 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.