Multiple sequence alignment - TraesCS2A01G245400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G245400 chr2A 100.000 2342 0 0 1 2342 353301874 353304215 0.000000e+00 4325.0
1 TraesCS2A01G245400 chr2A 85.604 1938 194 49 1 1899 475479531 475481422 0.000000e+00 1954.0
2 TraesCS2A01G245400 chr2A 90.000 1280 106 15 1 1265 336659250 336660522 0.000000e+00 1635.0
3 TraesCS2A01G245400 chr2A 89.992 1249 110 9 1 1237 289999766 289998521 0.000000e+00 1600.0
4 TraesCS2A01G245400 chr2A 88.240 1301 137 9 1 1290 643640592 643641887 0.000000e+00 1541.0
5 TraesCS2A01G245400 chr2A 88.802 1277 111 19 1 1265 292256896 292258152 0.000000e+00 1537.0
6 TraesCS2A01G245400 chr2A 86.815 986 94 21 967 1923 354235426 354234448 0.000000e+00 1068.0
7 TraesCS2A01G245400 chr1A 92.166 2004 138 12 1 1990 236824846 236822848 0.000000e+00 2813.0
8 TraesCS2A01G245400 chr1A 90.718 1239 99 10 1 1226 76044378 76045613 0.000000e+00 1637.0
9 TraesCS2A01G245400 chr1A 85.401 1048 102 27 973 1989 252557163 252558190 0.000000e+00 1040.0
10 TraesCS2A01G245400 chr1A 83.097 988 112 26 1029 1989 175678769 175677810 0.000000e+00 848.0
11 TraesCS2A01G245400 chr1A 95.000 260 13 0 2008 2267 199915243 199915502 2.170000e-110 409.0
12 TraesCS2A01G245400 chr1A 95.000 260 13 0 2008 2267 210692268 210692527 2.170000e-110 409.0
13 TraesCS2A01G245400 chr1A 94.615 260 14 0 2008 2267 195378477 195378218 1.010000e-108 403.0
14 TraesCS2A01G245400 chr1A 94.615 260 14 0 2008 2267 210408759 210409018 1.010000e-108 403.0
15 TraesCS2A01G245400 chr1A 92.806 278 20 0 1990 2267 354200423 354200146 1.010000e-108 403.0
16 TraesCS2A01G245400 chr1A 95.890 73 3 0 2267 2339 229891234 229891306 4.090000e-23 119.0
17 TraesCS2A01G245400 chr1A 94.595 74 3 1 2267 2339 79251322 79251395 1.900000e-21 113.0
18 TraesCS2A01G245400 chr7A 91.238 2020 118 23 1 1990 345299258 345297268 0.000000e+00 2695.0
19 TraesCS2A01G245400 chr6A 88.072 2012 200 28 1 1989 180317266 180315272 0.000000e+00 2350.0
20 TraesCS2A01G245400 chr6A 95.385 260 12 0 2008 2267 287053922 287053663 4.660000e-112 414.0
21 TraesCS2A01G245400 chr6A 96.000 75 2 1 2267 2340 503860078 503860004 1.140000e-23 121.0
22 TraesCS2A01G245400 chr6A 94.595 74 3 1 2267 2339 286542667 286542594 1.900000e-21 113.0
23 TraesCS2A01G245400 chr5A 87.202 2055 191 35 1 1990 220546638 220548685 0.000000e+00 2272.0
24 TraesCS2A01G245400 chr5A 82.002 2028 235 82 1 1989 258748432 258750368 0.000000e+00 1604.0
25 TraesCS2A01G245400 chr5A 88.558 437 34 12 1560 1989 273566818 273566391 1.240000e-142 516.0
26 TraesCS2A01G245400 chr5A 95.769 260 11 0 2008 2267 263471591 263471850 1.000000e-113 420.0
27 TraesCS2A01G245400 chr4A 83.562 2038 232 46 1 1989 276954651 276952668 0.000000e+00 1812.0
28 TraesCS2A01G245400 chr4A 81.121 1070 136 41 972 1989 334563002 334564057 0.000000e+00 797.0
29 TraesCS2A01G245400 chr4A 88.101 437 41 11 1560 1989 302916510 302916942 2.080000e-140 508.0
30 TraesCS2A01G245400 chr4A 95.385 260 12 0 2008 2267 273388980 273389239 4.660000e-112 414.0
31 TraesCS2A01G245400 chr4A 95.385 260 12 0 2008 2267 275312249 275312508 4.660000e-112 414.0
32 TraesCS2A01G245400 chr4A 97.368 76 2 0 2267 2342 321754701 321754776 1.890000e-26 130.0
33 TraesCS2A01G245400 chr3A 86.609 1389 147 27 390 1751 378767952 378766576 0.000000e+00 1498.0
34 TraesCS2A01G245400 chr3A 88.539 1143 116 10 2 1132 329196644 329197783 0.000000e+00 1371.0
35 TraesCS2A01G245400 chr3A 96.000 75 1 2 2267 2339 413668133 413668059 1.140000e-23 121.0
36 TraesCS2A01G245400 chr3B 84.024 1183 170 17 1 1169 162416355 162417532 0.000000e+00 1120.0
37 TraesCS2A01G245400 chr3B 83.472 1204 170 26 1 1187 473130461 473131652 0.000000e+00 1094.0
38 TraesCS2A01G245400 chr3B 75.446 224 40 13 1273 1488 331731248 331731032 6.890000e-16 95.3
39 TraesCS2A01G245400 chr7B 83.456 1221 179 20 1 1202 226337711 226336495 0.000000e+00 1114.0
40 TraesCS2A01G245400 chr7B 95.890 73 2 1 2267 2338 298499052 298499124 1.470000e-22 117.0
41 TraesCS2A01G245400 chr6D 94.595 74 3 1 2267 2339 251070272 251070345 1.900000e-21 113.0
42 TraesCS2A01G245400 chr4B 93.506 77 4 1 2267 2342 441831445 441831369 1.900000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G245400 chr2A 353301874 353304215 2341 False 4325 4325 100.000 1 2342 1 chr2A.!!$F3 2341
1 TraesCS2A01G245400 chr2A 475479531 475481422 1891 False 1954 1954 85.604 1 1899 1 chr2A.!!$F4 1898
2 TraesCS2A01G245400 chr2A 336659250 336660522 1272 False 1635 1635 90.000 1 1265 1 chr2A.!!$F2 1264
3 TraesCS2A01G245400 chr2A 289998521 289999766 1245 True 1600 1600 89.992 1 1237 1 chr2A.!!$R1 1236
4 TraesCS2A01G245400 chr2A 643640592 643641887 1295 False 1541 1541 88.240 1 1290 1 chr2A.!!$F5 1289
5 TraesCS2A01G245400 chr2A 292256896 292258152 1256 False 1537 1537 88.802 1 1265 1 chr2A.!!$F1 1264
6 TraesCS2A01G245400 chr2A 354234448 354235426 978 True 1068 1068 86.815 967 1923 1 chr2A.!!$R2 956
7 TraesCS2A01G245400 chr1A 236822848 236824846 1998 True 2813 2813 92.166 1 1990 1 chr1A.!!$R3 1989
8 TraesCS2A01G245400 chr1A 76044378 76045613 1235 False 1637 1637 90.718 1 1226 1 chr1A.!!$F1 1225
9 TraesCS2A01G245400 chr1A 252557163 252558190 1027 False 1040 1040 85.401 973 1989 1 chr1A.!!$F7 1016
10 TraesCS2A01G245400 chr1A 175677810 175678769 959 True 848 848 83.097 1029 1989 1 chr1A.!!$R1 960
11 TraesCS2A01G245400 chr7A 345297268 345299258 1990 True 2695 2695 91.238 1 1990 1 chr7A.!!$R1 1989
12 TraesCS2A01G245400 chr6A 180315272 180317266 1994 True 2350 2350 88.072 1 1989 1 chr6A.!!$R1 1988
13 TraesCS2A01G245400 chr5A 220546638 220548685 2047 False 2272 2272 87.202 1 1990 1 chr5A.!!$F1 1989
14 TraesCS2A01G245400 chr5A 258748432 258750368 1936 False 1604 1604 82.002 1 1989 1 chr5A.!!$F2 1988
15 TraesCS2A01G245400 chr4A 276952668 276954651 1983 True 1812 1812 83.562 1 1989 1 chr4A.!!$R1 1988
16 TraesCS2A01G245400 chr4A 334563002 334564057 1055 False 797 797 81.121 972 1989 1 chr4A.!!$F5 1017
17 TraesCS2A01G245400 chr3A 378766576 378767952 1376 True 1498 1498 86.609 390 1751 1 chr3A.!!$R1 1361
18 TraesCS2A01G245400 chr3A 329196644 329197783 1139 False 1371 1371 88.539 2 1132 1 chr3A.!!$F1 1130
19 TraesCS2A01G245400 chr3B 162416355 162417532 1177 False 1120 1120 84.024 1 1169 1 chr3B.!!$F1 1168
20 TraesCS2A01G245400 chr3B 473130461 473131652 1191 False 1094 1094 83.472 1 1187 1 chr3B.!!$F2 1186
21 TraesCS2A01G245400 chr7B 226336495 226337711 1216 True 1114 1114 83.456 1 1202 1 chr7B.!!$R1 1201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
885 903 0.240411 GCGACAAGTACTCCGTGAGT 59.76 55.0 10.71 10.71 45.54 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2062 2294 0.033228 CGGATGATGAGGAGGAGTGC 59.967 60.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.027192 ACCAACCGATGCTCTACATGTT 60.027 45.455 2.30 0.00 39.84 2.71
328 329 7.501225 TCAAGTTCCTTAGTTACTTTTGGAAGG 59.499 37.037 11.53 8.50 37.19 3.46
397 398 2.330041 CACAAACCGACGGCCAAC 59.670 61.111 15.39 0.00 0.00 3.77
741 758 3.372206 GTCTTCAACATTGGTGATCTCGG 59.628 47.826 4.99 0.00 0.00 4.63
746 763 0.464373 CATTGGTGATCTCGGGTGGG 60.464 60.000 0.00 0.00 0.00 4.61
885 903 0.240411 GCGACAAGTACTCCGTGAGT 59.760 55.000 10.71 10.71 45.54 3.41
1258 1365 1.536662 AAAGTCTCCAGGCTCCGGT 60.537 57.895 0.00 0.00 0.00 5.28
1300 1425 4.361971 ACGACCTCCAGGCTCCGA 62.362 66.667 8.94 0.00 39.32 4.55
1307 1432 3.382832 CCAGGCTCCGAACGTCCT 61.383 66.667 0.00 0.00 0.00 3.85
1339 1464 0.815734 CGACCGACACTTCCATACCT 59.184 55.000 0.00 0.00 0.00 3.08
1371 1496 1.348008 ACAGACATCCGATGCCCCAT 61.348 55.000 8.36 0.00 0.00 4.00
1451 1607 1.602851 CCGAATCTACAGACGTCCGAT 59.397 52.381 13.01 6.68 0.00 4.18
1489 1645 3.764466 CTCGCAAGCCTCCGGACT 61.764 66.667 0.00 0.00 37.18 3.85
1537 1720 3.797353 CCGCAGCCCATGTACCCT 61.797 66.667 0.00 0.00 0.00 4.34
1541 1733 1.376609 GCAGCCCATGTACCCTTTCG 61.377 60.000 0.00 0.00 0.00 3.46
1712 1911 3.245407 CCCTTTGGATTCAAGACCTCCTT 60.245 47.826 0.00 0.00 33.98 3.36
1841 2068 7.942894 TGAACTCTTATGTATCCGAGGATCTAA 59.057 37.037 8.06 5.07 36.17 2.10
1942 2174 0.817654 TCGTGTTCATCGCAGGATCT 59.182 50.000 0.00 0.00 0.00 2.75
1990 2222 1.068741 GGGTTCCTAGCCTACATCACG 59.931 57.143 0.00 0.00 38.92 4.35
1991 2223 1.068741 GGTTCCTAGCCTACATCACGG 59.931 57.143 0.00 0.00 0.00 4.94
1992 2224 1.068741 GTTCCTAGCCTACATCACGGG 59.931 57.143 0.00 0.00 0.00 5.28
1993 2225 0.260816 TCCTAGCCTACATCACGGGT 59.739 55.000 0.00 0.00 34.91 5.28
1994 2226 0.674534 CCTAGCCTACATCACGGGTC 59.325 60.000 0.00 0.00 32.47 4.46
1995 2227 0.674534 CTAGCCTACATCACGGGTCC 59.325 60.000 0.00 0.00 32.47 4.46
1996 2228 0.260816 TAGCCTACATCACGGGTCCT 59.739 55.000 0.00 0.00 32.47 3.85
1997 2229 1.144057 GCCTACATCACGGGTCCTG 59.856 63.158 0.00 0.00 0.00 3.86
1998 2230 1.823295 CCTACATCACGGGTCCTGG 59.177 63.158 1.89 0.00 0.00 4.45
1999 2231 1.686325 CCTACATCACGGGTCCTGGG 61.686 65.000 1.89 0.00 0.00 4.45
2000 2232 0.686441 CTACATCACGGGTCCTGGGA 60.686 60.000 4.73 4.73 0.00 4.37
2001 2233 0.686441 TACATCACGGGTCCTGGGAG 60.686 60.000 9.02 3.54 0.00 4.30
2002 2234 2.365635 ATCACGGGTCCTGGGAGG 60.366 66.667 9.02 0.00 36.46 4.30
2003 2235 3.254035 ATCACGGGTCCTGGGAGGT 62.254 63.158 9.02 0.00 36.53 3.85
2004 2236 3.706373 CACGGGTCCTGGGAGGTG 61.706 72.222 1.89 0.00 36.53 4.00
2005 2237 4.250170 ACGGGTCCTGGGAGGTGT 62.250 66.667 1.89 0.00 36.53 4.16
2006 2238 3.391382 CGGGTCCTGGGAGGTGTC 61.391 72.222 0.00 0.00 36.53 3.67
2007 2239 2.122954 GGGTCCTGGGAGGTGTCT 59.877 66.667 0.00 0.00 36.53 3.41
2008 2240 1.990614 GGGTCCTGGGAGGTGTCTC 60.991 68.421 0.00 0.00 36.53 3.36
2016 2248 2.479650 GAGGTGTCTCCGTCGTCG 59.520 66.667 0.00 0.00 41.99 5.12
2017 2249 2.281345 AGGTGTCTCCGTCGTCGT 60.281 61.111 0.71 0.00 41.99 4.34
2018 2250 1.849976 GAGGTGTCTCCGTCGTCGTT 61.850 60.000 0.71 0.00 41.99 3.85
2019 2251 1.008079 GGTGTCTCCGTCGTCGTTT 60.008 57.895 0.71 0.00 35.01 3.60
2020 2252 1.000736 GGTGTCTCCGTCGTCGTTTC 61.001 60.000 0.71 0.00 35.01 2.78
2021 2253 1.000736 GTGTCTCCGTCGTCGTTTCC 61.001 60.000 0.71 0.00 35.01 3.13
2022 2254 1.283793 GTCTCCGTCGTCGTTTCCA 59.716 57.895 0.71 0.00 35.01 3.53
2023 2255 0.109412 GTCTCCGTCGTCGTTTCCAT 60.109 55.000 0.71 0.00 35.01 3.41
2024 2256 0.109458 TCTCCGTCGTCGTTTCCATG 60.109 55.000 0.71 0.00 35.01 3.66
2025 2257 1.683790 CTCCGTCGTCGTTTCCATGC 61.684 60.000 0.71 0.00 35.01 4.06
2026 2258 1.736645 CCGTCGTCGTTTCCATGCT 60.737 57.895 0.71 0.00 35.01 3.79
2027 2259 1.289109 CCGTCGTCGTTTCCATGCTT 61.289 55.000 0.71 0.00 35.01 3.91
2028 2260 0.093026 CGTCGTCGTTTCCATGCTTC 59.907 55.000 0.00 0.00 0.00 3.86
2029 2261 0.442699 GTCGTCGTTTCCATGCTTCC 59.557 55.000 0.00 0.00 0.00 3.46
2030 2262 0.672401 TCGTCGTTTCCATGCTTCCC 60.672 55.000 0.00 0.00 0.00 3.97
2031 2263 0.673644 CGTCGTTTCCATGCTTCCCT 60.674 55.000 0.00 0.00 0.00 4.20
2032 2264 1.087501 GTCGTTTCCATGCTTCCCTC 58.912 55.000 0.00 0.00 0.00 4.30
2033 2265 0.391130 TCGTTTCCATGCTTCCCTCG 60.391 55.000 0.00 0.00 0.00 4.63
2034 2266 1.803289 GTTTCCATGCTTCCCTCGC 59.197 57.895 0.00 0.00 0.00 5.03
2035 2267 1.745115 TTTCCATGCTTCCCTCGCG 60.745 57.895 0.00 0.00 0.00 5.87
2036 2268 3.680620 TTCCATGCTTCCCTCGCGG 62.681 63.158 6.13 0.00 0.00 6.46
2037 2269 4.161295 CCATGCTTCCCTCGCGGA 62.161 66.667 6.13 0.00 39.68 5.54
2038 2270 2.109799 CATGCTTCCCTCGCGGAT 59.890 61.111 6.13 0.00 41.63 4.18
2039 2271 2.109799 ATGCTTCCCTCGCGGATG 59.890 61.111 6.13 0.00 41.63 3.51
2040 2272 3.466791 ATGCTTCCCTCGCGGATGG 62.467 63.158 6.13 6.50 41.63 3.51
2041 2273 4.162690 GCTTCCCTCGCGGATGGT 62.163 66.667 6.13 0.00 41.63 3.55
2042 2274 2.202932 CTTCCCTCGCGGATGGTG 60.203 66.667 6.13 1.51 41.63 4.17
2043 2275 3.000819 TTCCCTCGCGGATGGTGT 61.001 61.111 6.13 0.00 41.63 4.16
2044 2276 1.672854 CTTCCCTCGCGGATGGTGTA 61.673 60.000 6.13 0.00 41.63 2.90
2045 2277 1.672854 TTCCCTCGCGGATGGTGTAG 61.673 60.000 6.13 0.00 41.63 2.74
2046 2278 2.423898 CCCTCGCGGATGGTGTAGT 61.424 63.158 6.13 0.00 0.00 2.73
2047 2279 1.515954 CCTCGCGGATGGTGTAGTT 59.484 57.895 6.13 0.00 0.00 2.24
2048 2280 0.806102 CCTCGCGGATGGTGTAGTTG 60.806 60.000 6.13 0.00 0.00 3.16
2049 2281 0.108804 CTCGCGGATGGTGTAGTTGT 60.109 55.000 6.13 0.00 0.00 3.32
2050 2282 0.319083 TCGCGGATGGTGTAGTTGTT 59.681 50.000 6.13 0.00 0.00 2.83
2051 2283 0.719465 CGCGGATGGTGTAGTTGTTC 59.281 55.000 0.00 0.00 0.00 3.18
2052 2284 1.084289 GCGGATGGTGTAGTTGTTCC 58.916 55.000 0.00 0.00 0.00 3.62
2053 2285 1.338769 GCGGATGGTGTAGTTGTTCCT 60.339 52.381 0.00 0.00 0.00 3.36
2054 2286 2.874457 GCGGATGGTGTAGTTGTTCCTT 60.874 50.000 0.00 0.00 0.00 3.36
2055 2287 2.742053 CGGATGGTGTAGTTGTTCCTTG 59.258 50.000 0.00 0.00 0.00 3.61
2056 2288 3.081804 GGATGGTGTAGTTGTTCCTTGG 58.918 50.000 0.00 0.00 0.00 3.61
2057 2289 1.975660 TGGTGTAGTTGTTCCTTGGC 58.024 50.000 0.00 0.00 0.00 4.52
2058 2290 0.872388 GGTGTAGTTGTTCCTTGGCG 59.128 55.000 0.00 0.00 0.00 5.69
2059 2291 0.237498 GTGTAGTTGTTCCTTGGCGC 59.763 55.000 0.00 0.00 0.00 6.53
2060 2292 0.107831 TGTAGTTGTTCCTTGGCGCT 59.892 50.000 7.64 0.00 0.00 5.92
2061 2293 1.235724 GTAGTTGTTCCTTGGCGCTT 58.764 50.000 7.64 0.00 0.00 4.68
2062 2294 1.069227 GTAGTTGTTCCTTGGCGCTTG 60.069 52.381 7.64 0.00 0.00 4.01
2063 2295 1.661509 GTTGTTCCTTGGCGCTTGC 60.662 57.895 7.64 0.00 38.11 4.01
2064 2296 2.124060 TTGTTCCTTGGCGCTTGCA 61.124 52.632 7.64 0.00 41.71 4.08
2065 2297 2.050077 GTTCCTTGGCGCTTGCAC 60.050 61.111 7.64 0.00 41.71 4.57
2066 2298 2.203337 TTCCTTGGCGCTTGCACT 60.203 55.556 7.64 0.00 41.71 4.40
2067 2299 2.260869 TTCCTTGGCGCTTGCACTC 61.261 57.895 7.64 0.00 41.71 3.51
2068 2300 3.741476 CCTTGGCGCTTGCACTCC 61.741 66.667 7.64 0.00 41.71 3.85
2069 2301 2.670934 CTTGGCGCTTGCACTCCT 60.671 61.111 7.64 0.00 41.71 3.69
2070 2302 2.669569 TTGGCGCTTGCACTCCTC 60.670 61.111 7.64 0.00 41.71 3.71
2071 2303 4.704833 TGGCGCTTGCACTCCTCC 62.705 66.667 7.64 0.00 41.71 4.30
2072 2304 4.400961 GGCGCTTGCACTCCTCCT 62.401 66.667 7.64 0.00 41.71 3.69
2073 2305 2.817396 GCGCTTGCACTCCTCCTC 60.817 66.667 0.00 0.00 38.92 3.71
2074 2306 2.659016 CGCTTGCACTCCTCCTCA 59.341 61.111 0.00 0.00 0.00 3.86
2075 2307 1.220206 CGCTTGCACTCCTCCTCAT 59.780 57.895 0.00 0.00 0.00 2.90
2076 2308 0.809241 CGCTTGCACTCCTCCTCATC 60.809 60.000 0.00 0.00 0.00 2.92
2077 2309 0.251354 GCTTGCACTCCTCCTCATCA 59.749 55.000 0.00 0.00 0.00 3.07
2078 2310 1.134159 GCTTGCACTCCTCCTCATCAT 60.134 52.381 0.00 0.00 0.00 2.45
2079 2311 2.836262 CTTGCACTCCTCCTCATCATC 58.164 52.381 0.00 0.00 0.00 2.92
2080 2312 1.126488 TGCACTCCTCCTCATCATCC 58.874 55.000 0.00 0.00 0.00 3.51
2081 2313 0.033228 GCACTCCTCCTCATCATCCG 59.967 60.000 0.00 0.00 0.00 4.18
2082 2314 0.033228 CACTCCTCCTCATCATCCGC 59.967 60.000 0.00 0.00 0.00 5.54
2083 2315 0.397675 ACTCCTCCTCATCATCCGCA 60.398 55.000 0.00 0.00 0.00 5.69
2084 2316 0.317799 CTCCTCCTCATCATCCGCAG 59.682 60.000 0.00 0.00 0.00 5.18
2085 2317 0.397675 TCCTCCTCATCATCCGCAGT 60.398 55.000 0.00 0.00 0.00 4.40
2086 2318 0.249784 CCTCCTCATCATCCGCAGTG 60.250 60.000 0.00 0.00 0.00 3.66
2087 2319 0.463204 CTCCTCATCATCCGCAGTGT 59.537 55.000 0.00 0.00 0.00 3.55
2088 2320 0.904649 TCCTCATCATCCGCAGTGTT 59.095 50.000 0.00 0.00 0.00 3.32
2089 2321 1.134699 TCCTCATCATCCGCAGTGTTC 60.135 52.381 0.00 0.00 0.00 3.18
2090 2322 1.293924 CTCATCATCCGCAGTGTTCC 58.706 55.000 0.00 0.00 0.00 3.62
2091 2323 0.460109 TCATCATCCGCAGTGTTCCG 60.460 55.000 0.00 0.00 0.00 4.30
2092 2324 0.460109 CATCATCCGCAGTGTTCCGA 60.460 55.000 0.00 0.00 0.00 4.55
2093 2325 0.460284 ATCATCCGCAGTGTTCCGAC 60.460 55.000 0.00 0.00 0.00 4.79
2094 2326 2.126071 ATCCGCAGTGTTCCGACG 60.126 61.111 0.00 0.00 0.00 5.12
2095 2327 2.632544 ATCCGCAGTGTTCCGACGA 61.633 57.895 0.00 0.00 0.00 4.20
2096 2328 1.945354 ATCCGCAGTGTTCCGACGAT 61.945 55.000 0.00 0.00 0.00 3.73
2097 2329 1.138036 CCGCAGTGTTCCGACGATA 59.862 57.895 0.00 0.00 0.00 2.92
2098 2330 1.138047 CCGCAGTGTTCCGACGATAC 61.138 60.000 0.00 0.00 0.00 2.24
2099 2331 0.455464 CGCAGTGTTCCGACGATACA 60.455 55.000 0.00 0.00 0.00 2.29
2100 2332 1.797713 CGCAGTGTTCCGACGATACAT 60.798 52.381 0.00 0.00 0.00 2.29
2101 2333 2.540157 CGCAGTGTTCCGACGATACATA 60.540 50.000 0.00 0.00 0.00 2.29
2102 2334 3.639538 GCAGTGTTCCGACGATACATAT 58.360 45.455 0.00 0.00 0.00 1.78
2103 2335 3.425525 GCAGTGTTCCGACGATACATATG 59.574 47.826 0.00 0.00 0.00 1.78
2104 2336 3.425525 CAGTGTTCCGACGATACATATGC 59.574 47.826 1.58 0.00 0.00 3.14
2105 2337 3.067601 AGTGTTCCGACGATACATATGCA 59.932 43.478 1.58 0.00 0.00 3.96
2106 2338 3.987868 GTGTTCCGACGATACATATGCAT 59.012 43.478 3.79 3.79 0.00 3.96
2107 2339 3.987220 TGTTCCGACGATACATATGCATG 59.013 43.478 10.16 0.00 38.21 4.06
2108 2340 2.606108 TCCGACGATACATATGCATGC 58.394 47.619 11.82 11.82 35.39 4.06
2109 2341 2.029470 TCCGACGATACATATGCATGCA 60.029 45.455 25.04 25.04 35.39 3.96
2110 2342 2.092681 CCGACGATACATATGCATGCAC 59.907 50.000 25.37 7.38 35.39 4.57
2111 2343 2.730928 CGACGATACATATGCATGCACA 59.269 45.455 25.37 13.37 35.39 4.57
2112 2344 3.422214 CGACGATACATATGCATGCACAC 60.422 47.826 25.37 8.31 35.39 3.82
2113 2345 2.476241 ACGATACATATGCATGCACACG 59.524 45.455 25.37 20.45 35.39 4.49
2114 2346 2.730928 CGATACATATGCATGCACACGA 59.269 45.455 25.37 9.29 35.39 4.35
2115 2347 3.181537 CGATACATATGCATGCACACGAG 60.182 47.826 25.37 13.70 35.39 4.18
2116 2348 2.314323 ACATATGCATGCACACGAGA 57.686 45.000 25.37 4.59 35.39 4.04
2117 2349 2.207590 ACATATGCATGCACACGAGAG 58.792 47.619 25.37 11.17 35.39 3.20
2118 2350 1.529865 CATATGCATGCACACGAGAGG 59.470 52.381 25.37 2.20 0.00 3.69
2119 2351 0.179076 TATGCATGCACACGAGAGGG 60.179 55.000 25.37 0.00 43.28 4.30
2120 2352 2.821366 GCATGCACACGAGAGGGG 60.821 66.667 14.21 0.00 40.46 4.79
2121 2353 2.665000 CATGCACACGAGAGGGGT 59.335 61.111 0.00 0.00 40.46 4.95
2122 2354 1.742880 CATGCACACGAGAGGGGTG 60.743 63.158 0.00 0.00 40.46 4.61
2124 2356 2.048127 GCACACGAGAGGGGTGTC 60.048 66.667 0.00 0.00 46.27 3.67
2125 2357 2.867855 GCACACGAGAGGGGTGTCA 61.868 63.158 0.00 0.00 46.27 3.58
2126 2358 1.745890 CACACGAGAGGGGTGTCAA 59.254 57.895 0.00 0.00 46.27 3.18
2127 2359 0.319900 CACACGAGAGGGGTGTCAAG 60.320 60.000 0.00 0.00 46.27 3.02
2128 2360 0.759436 ACACGAGAGGGGTGTCAAGT 60.759 55.000 0.00 0.00 44.93 3.16
2129 2361 1.254026 CACGAGAGGGGTGTCAAGTA 58.746 55.000 0.00 0.00 0.00 2.24
2130 2362 1.202582 CACGAGAGGGGTGTCAAGTAG 59.797 57.143 0.00 0.00 0.00 2.57
2131 2363 1.203025 ACGAGAGGGGTGTCAAGTAGT 60.203 52.381 0.00 0.00 0.00 2.73
2132 2364 2.040813 ACGAGAGGGGTGTCAAGTAGTA 59.959 50.000 0.00 0.00 0.00 1.82
2133 2365 3.288964 CGAGAGGGGTGTCAAGTAGTAT 58.711 50.000 0.00 0.00 0.00 2.12
2134 2366 4.080129 ACGAGAGGGGTGTCAAGTAGTATA 60.080 45.833 0.00 0.00 0.00 1.47
2135 2367 4.275443 CGAGAGGGGTGTCAAGTAGTATAC 59.725 50.000 0.00 0.00 43.47 1.47
2136 2368 4.544683 AGAGGGGTGTCAAGTAGTATACC 58.455 47.826 0.00 0.00 44.47 2.73
2137 2369 4.016851 AGAGGGGTGTCAAGTAGTATACCA 60.017 45.833 0.00 0.00 44.47 3.25
2138 2370 4.892198 AGGGGTGTCAAGTAGTATACCAT 58.108 43.478 0.00 0.00 44.47 3.55
2139 2371 4.900054 AGGGGTGTCAAGTAGTATACCATC 59.100 45.833 0.00 0.00 44.47 3.51
2140 2372 4.040095 GGGGTGTCAAGTAGTATACCATCC 59.960 50.000 0.00 0.00 44.47 3.51
2141 2373 4.900054 GGGTGTCAAGTAGTATACCATCCT 59.100 45.833 0.00 0.00 44.47 3.24
2142 2374 5.010820 GGGTGTCAAGTAGTATACCATCCTC 59.989 48.000 0.00 0.00 44.47 3.71
2143 2375 5.278364 GGTGTCAAGTAGTATACCATCCTCG 60.278 48.000 0.00 0.00 44.47 4.63
2144 2376 5.530171 GTGTCAAGTAGTATACCATCCTCGA 59.470 44.000 0.00 0.00 44.47 4.04
2145 2377 6.039047 GTGTCAAGTAGTATACCATCCTCGAA 59.961 42.308 0.00 0.00 44.47 3.71
2146 2378 6.262496 TGTCAAGTAGTATACCATCCTCGAAG 59.738 42.308 0.00 0.00 44.47 3.79
2147 2379 5.768662 TCAAGTAGTATACCATCCTCGAAGG 59.231 44.000 0.00 0.00 44.47 3.46
2148 2380 4.664392 AGTAGTATACCATCCTCGAAGGG 58.336 47.826 0.00 0.00 44.47 3.95
2149 2381 2.890814 AGTATACCATCCTCGAAGGGG 58.109 52.381 0.00 0.00 35.59 4.79
2150 2382 1.275573 GTATACCATCCTCGAAGGGGC 59.724 57.143 0.00 0.00 35.59 5.80
2151 2383 1.128188 ATACCATCCTCGAAGGGGCC 61.128 60.000 0.00 0.00 35.59 5.80
2152 2384 2.539277 TACCATCCTCGAAGGGGCCA 62.539 60.000 4.39 0.00 35.59 5.36
2153 2385 2.679342 CCATCCTCGAAGGGGCCAA 61.679 63.158 4.39 0.00 35.59 4.52
2154 2386 1.153086 CATCCTCGAAGGGGCCAAG 60.153 63.158 4.39 0.00 35.59 3.61
2155 2387 1.616628 ATCCTCGAAGGGGCCAAGT 60.617 57.895 4.39 0.00 35.59 3.16
2156 2388 1.915078 ATCCTCGAAGGGGCCAAGTG 61.915 60.000 4.39 0.00 35.59 3.16
2157 2389 2.592993 CCTCGAAGGGGCCAAGTGA 61.593 63.158 4.39 0.00 0.00 3.41
2158 2390 1.078848 CTCGAAGGGGCCAAGTGAG 60.079 63.158 4.39 3.07 0.00 3.51
2159 2391 2.747855 CGAAGGGGCCAAGTGAGC 60.748 66.667 4.39 0.00 0.00 4.26
2160 2392 2.436109 GAAGGGGCCAAGTGAGCA 59.564 61.111 4.39 0.00 0.00 4.26
2161 2393 1.973812 GAAGGGGCCAAGTGAGCAC 60.974 63.158 4.39 0.00 0.00 4.40
2162 2394 3.850098 AAGGGGCCAAGTGAGCACG 62.850 63.158 4.39 0.00 33.14 5.34
2163 2395 4.643387 GGGGCCAAGTGAGCACGT 62.643 66.667 4.39 0.00 33.14 4.49
2164 2396 3.357079 GGGCCAAGTGAGCACGTG 61.357 66.667 12.28 12.28 39.87 4.49
2165 2397 2.591715 GGCCAAGTGAGCACGTGT 60.592 61.111 18.38 3.69 38.78 4.49
2166 2398 1.301401 GGCCAAGTGAGCACGTGTA 60.301 57.895 18.38 1.01 38.78 2.90
2167 2399 0.882927 GGCCAAGTGAGCACGTGTAA 60.883 55.000 18.38 0.00 38.78 2.41
2168 2400 0.941542 GCCAAGTGAGCACGTGTAAA 59.058 50.000 18.38 0.00 38.78 2.01
2169 2401 1.069906 GCCAAGTGAGCACGTGTAAAG 60.070 52.381 18.38 1.24 38.78 1.85
2170 2402 1.531149 CCAAGTGAGCACGTGTAAAGG 59.469 52.381 18.38 6.74 38.78 3.11
2171 2403 2.479837 CAAGTGAGCACGTGTAAAGGA 58.520 47.619 18.38 0.00 36.33 3.36
2172 2404 2.440539 AGTGAGCACGTGTAAAGGAG 57.559 50.000 18.38 0.00 36.20 3.69
2173 2405 1.961394 AGTGAGCACGTGTAAAGGAGA 59.039 47.619 18.38 0.00 36.20 3.71
2174 2406 2.563179 AGTGAGCACGTGTAAAGGAGAT 59.437 45.455 18.38 0.00 36.20 2.75
2175 2407 2.668457 GTGAGCACGTGTAAAGGAGATG 59.332 50.000 18.38 0.00 0.00 2.90
2176 2408 2.560981 TGAGCACGTGTAAAGGAGATGA 59.439 45.455 18.38 0.00 0.00 2.92
2177 2409 3.195610 TGAGCACGTGTAAAGGAGATGAT 59.804 43.478 18.38 0.00 0.00 2.45
2178 2410 4.184629 GAGCACGTGTAAAGGAGATGATT 58.815 43.478 18.38 0.00 0.00 2.57
2179 2411 4.184629 AGCACGTGTAAAGGAGATGATTC 58.815 43.478 18.38 0.00 0.00 2.52
2180 2412 3.932710 GCACGTGTAAAGGAGATGATTCA 59.067 43.478 18.38 0.00 0.00 2.57
2181 2413 4.201724 GCACGTGTAAAGGAGATGATTCAC 60.202 45.833 18.38 0.00 0.00 3.18
2182 2414 4.330074 CACGTGTAAAGGAGATGATTCACC 59.670 45.833 7.58 0.00 33.15 4.02
2183 2415 4.223032 ACGTGTAAAGGAGATGATTCACCT 59.777 41.667 0.00 0.00 43.92 4.00
2188 2420 3.659183 AGGAGATGATTCACCTTTGGG 57.341 47.619 0.00 0.00 39.65 4.12
2189 2421 3.334881 AAGGAGATGATTCACCTTTGGGT 59.665 43.478 2.08 0.00 46.90 4.51
2190 2422 4.111577 AGGAGATGATTCACCTTTGGGTA 58.888 43.478 0.00 0.00 45.41 3.69
2191 2423 4.728860 AGGAGATGATTCACCTTTGGGTAT 59.271 41.667 0.00 0.00 45.41 2.73
2192 2424 4.823989 GGAGATGATTCACCTTTGGGTATG 59.176 45.833 0.00 0.00 45.41 2.39
2193 2425 5.440610 GAGATGATTCACCTTTGGGTATGT 58.559 41.667 0.00 0.00 45.41 2.29
2194 2426 5.440610 AGATGATTCACCTTTGGGTATGTC 58.559 41.667 0.00 0.00 45.41 3.06
2195 2427 4.649267 TGATTCACCTTTGGGTATGTCA 57.351 40.909 0.00 0.00 45.41 3.58
2196 2428 4.991776 TGATTCACCTTTGGGTATGTCAA 58.008 39.130 0.00 0.00 45.41 3.18
2197 2429 5.009631 TGATTCACCTTTGGGTATGTCAAG 58.990 41.667 0.00 0.00 45.41 3.02
2198 2430 4.447138 TTCACCTTTGGGTATGTCAAGT 57.553 40.909 0.00 0.00 45.41 3.16
2199 2431 5.570205 TTCACCTTTGGGTATGTCAAGTA 57.430 39.130 0.00 0.00 45.41 2.24
2200 2432 5.160607 TCACCTTTGGGTATGTCAAGTAG 57.839 43.478 0.00 0.00 45.41 2.57
2201 2433 4.841813 TCACCTTTGGGTATGTCAAGTAGA 59.158 41.667 0.00 0.00 45.41 2.59
2202 2434 5.487488 TCACCTTTGGGTATGTCAAGTAGAT 59.513 40.000 0.00 0.00 45.41 1.98
2203 2435 5.586243 CACCTTTGGGTATGTCAAGTAGATG 59.414 44.000 0.00 0.00 45.41 2.90
2204 2436 5.250774 ACCTTTGGGTATGTCAAGTAGATGT 59.749 40.000 0.00 0.00 45.32 3.06
2205 2437 6.180472 CCTTTGGGTATGTCAAGTAGATGTT 58.820 40.000 0.00 0.00 0.00 2.71
2206 2438 6.094048 CCTTTGGGTATGTCAAGTAGATGTTG 59.906 42.308 0.00 0.00 0.00 3.33
2207 2439 4.513442 TGGGTATGTCAAGTAGATGTTGC 58.487 43.478 0.00 0.00 0.00 4.17
2208 2440 4.019771 TGGGTATGTCAAGTAGATGTTGCA 60.020 41.667 0.00 0.00 0.00 4.08
2209 2441 4.332819 GGGTATGTCAAGTAGATGTTGCAC 59.667 45.833 0.00 0.00 0.00 4.57
2210 2442 4.032900 GGTATGTCAAGTAGATGTTGCACG 59.967 45.833 0.00 0.00 0.00 5.34
2211 2443 3.106242 TGTCAAGTAGATGTTGCACGT 57.894 42.857 0.00 0.00 0.00 4.49
2212 2444 2.799978 TGTCAAGTAGATGTTGCACGTG 59.200 45.455 12.28 12.28 0.00 4.49
2213 2445 2.800544 GTCAAGTAGATGTTGCACGTGT 59.199 45.455 18.38 0.00 0.00 4.49
2214 2446 3.057019 TCAAGTAGATGTTGCACGTGTC 58.943 45.455 18.38 10.14 0.00 3.67
2215 2447 2.799978 CAAGTAGATGTTGCACGTGTCA 59.200 45.455 18.38 12.78 0.00 3.58
2216 2448 2.404215 AGTAGATGTTGCACGTGTCAC 58.596 47.619 18.38 14.21 0.00 3.67
2217 2449 2.035961 AGTAGATGTTGCACGTGTCACT 59.964 45.455 18.38 14.37 0.00 3.41
2218 2450 1.502231 AGATGTTGCACGTGTCACTC 58.498 50.000 18.38 12.25 0.00 3.51
2219 2451 0.161658 GATGTTGCACGTGTCACTCG 59.838 55.000 18.38 0.00 0.00 4.18
2220 2452 1.831389 ATGTTGCACGTGTCACTCGC 61.831 55.000 18.38 0.47 0.00 5.03
2221 2453 2.964925 TTGCACGTGTCACTCGCC 60.965 61.111 18.38 0.00 0.00 5.54
2222 2454 3.724914 TTGCACGTGTCACTCGCCA 62.725 57.895 18.38 0.33 0.00 5.69
2223 2455 3.406361 GCACGTGTCACTCGCCAG 61.406 66.667 18.38 0.00 0.00 4.85
2224 2456 2.335011 CACGTGTCACTCGCCAGA 59.665 61.111 7.58 0.00 0.00 3.86
2225 2457 1.080501 CACGTGTCACTCGCCAGAT 60.081 57.895 7.58 0.00 0.00 2.90
2226 2458 1.080501 ACGTGTCACTCGCCAGATG 60.081 57.895 0.00 0.00 0.00 2.90
2227 2459 1.807165 CGTGTCACTCGCCAGATGG 60.807 63.158 0.65 0.00 38.53 3.51
2228 2460 1.591703 GTGTCACTCGCCAGATGGA 59.408 57.895 2.18 0.00 37.39 3.41
2229 2461 0.737715 GTGTCACTCGCCAGATGGAC 60.738 60.000 2.18 0.00 37.39 4.02
2230 2462 0.900182 TGTCACTCGCCAGATGGACT 60.900 55.000 2.18 0.00 37.39 3.85
2231 2463 0.179124 GTCACTCGCCAGATGGACTC 60.179 60.000 2.18 0.00 37.39 3.36
2232 2464 0.323816 TCACTCGCCAGATGGACTCT 60.324 55.000 2.18 0.00 37.39 3.24
2233 2465 0.534412 CACTCGCCAGATGGACTCTT 59.466 55.000 2.18 0.00 37.39 2.85
2234 2466 0.534412 ACTCGCCAGATGGACTCTTG 59.466 55.000 2.18 0.00 37.39 3.02
2235 2467 0.820226 CTCGCCAGATGGACTCTTGA 59.180 55.000 2.18 0.00 37.39 3.02
2236 2468 0.532573 TCGCCAGATGGACTCTTGAC 59.467 55.000 2.18 0.00 37.39 3.18
2237 2469 0.247460 CGCCAGATGGACTCTTGACA 59.753 55.000 2.18 0.00 37.39 3.58
2238 2470 1.134580 CGCCAGATGGACTCTTGACAT 60.135 52.381 2.18 0.00 37.39 3.06
2239 2471 2.286872 GCCAGATGGACTCTTGACATG 58.713 52.381 2.18 0.00 37.39 3.21
2240 2472 2.915349 CCAGATGGACTCTTGACATGG 58.085 52.381 0.00 0.00 37.39 3.66
2241 2473 2.238144 CCAGATGGACTCTTGACATGGT 59.762 50.000 0.00 0.00 37.39 3.55
2242 2474 3.268330 CAGATGGACTCTTGACATGGTG 58.732 50.000 0.00 0.00 29.16 4.17
2243 2475 3.055602 CAGATGGACTCTTGACATGGTGA 60.056 47.826 0.00 0.00 29.16 4.02
2244 2476 3.779183 AGATGGACTCTTGACATGGTGAT 59.221 43.478 0.00 0.00 0.00 3.06
2245 2477 3.339253 TGGACTCTTGACATGGTGATG 57.661 47.619 0.00 0.00 35.49 3.07
2246 2478 2.639347 TGGACTCTTGACATGGTGATGT 59.361 45.455 0.00 0.00 46.01 3.06
2256 2488 4.362470 ACATGGTGATGTCCATAGGATG 57.638 45.455 0.00 0.00 45.23 3.51
2257 2489 2.936919 TGGTGATGTCCATAGGATGC 57.063 50.000 0.00 0.00 32.73 3.91
2258 2490 2.411583 TGGTGATGTCCATAGGATGCT 58.588 47.619 0.00 0.00 32.73 3.79
2259 2491 2.369860 TGGTGATGTCCATAGGATGCTC 59.630 50.000 0.00 0.00 32.73 4.26
2260 2492 2.289945 GGTGATGTCCATAGGATGCTCC 60.290 54.545 0.00 0.00 36.58 4.70
2261 2493 1.620323 TGATGTCCATAGGATGCTCCG 59.380 52.381 0.00 0.00 42.75 4.63
2262 2494 0.322975 ATGTCCATAGGATGCTCCGC 59.677 55.000 0.00 0.00 42.75 5.54
2263 2495 1.048160 TGTCCATAGGATGCTCCGCA 61.048 55.000 0.00 0.00 42.75 5.69
2272 2504 4.919653 TGCTCCGCATCAAGAGTC 57.080 55.556 0.00 0.00 31.71 3.36
2273 2505 1.974543 TGCTCCGCATCAAGAGTCA 59.025 52.632 0.00 0.00 31.71 3.41
2274 2506 0.108472 TGCTCCGCATCAAGAGTCAG 60.108 55.000 0.00 0.00 31.71 3.51
2275 2507 0.809241 GCTCCGCATCAAGAGTCAGG 60.809 60.000 0.00 0.00 32.47 3.86
2276 2508 0.534412 CTCCGCATCAAGAGTCAGGT 59.466 55.000 0.00 0.00 0.00 4.00
2277 2509 1.751351 CTCCGCATCAAGAGTCAGGTA 59.249 52.381 0.00 0.00 0.00 3.08
2278 2510 2.166459 CTCCGCATCAAGAGTCAGGTAA 59.834 50.000 0.00 0.00 0.00 2.85
2279 2511 2.166459 TCCGCATCAAGAGTCAGGTAAG 59.834 50.000 0.00 0.00 0.00 2.34
2280 2512 2.166459 CCGCATCAAGAGTCAGGTAAGA 59.834 50.000 0.00 0.00 0.00 2.10
2281 2513 3.181471 CCGCATCAAGAGTCAGGTAAGAT 60.181 47.826 0.00 0.00 0.00 2.40
2282 2514 4.047822 CGCATCAAGAGTCAGGTAAGATC 58.952 47.826 0.00 0.00 0.00 2.75
2283 2515 4.376146 GCATCAAGAGTCAGGTAAGATCC 58.624 47.826 0.00 0.00 0.00 3.36
2284 2516 4.100808 GCATCAAGAGTCAGGTAAGATCCT 59.899 45.833 0.00 0.00 38.51 3.24
2285 2517 5.303078 GCATCAAGAGTCAGGTAAGATCCTA 59.697 44.000 0.00 0.00 35.87 2.94
2286 2518 6.516527 GCATCAAGAGTCAGGTAAGATCCTAG 60.517 46.154 0.00 0.00 35.87 3.02
2287 2519 5.450453 TCAAGAGTCAGGTAAGATCCTAGG 58.550 45.833 0.82 0.82 35.87 3.02
2288 2520 5.193930 TCAAGAGTCAGGTAAGATCCTAGGA 59.806 44.000 15.46 15.46 35.87 2.94
2289 2521 5.735733 AGAGTCAGGTAAGATCCTAGGAA 57.264 43.478 17.30 0.00 35.87 3.36
2290 2522 6.093617 AGAGTCAGGTAAGATCCTAGGAAA 57.906 41.667 17.30 0.00 35.87 3.13
2291 2523 6.503944 AGAGTCAGGTAAGATCCTAGGAAAA 58.496 40.000 17.30 0.00 35.87 2.29
2292 2524 6.609616 AGAGTCAGGTAAGATCCTAGGAAAAG 59.390 42.308 17.30 0.55 35.87 2.27
2293 2525 6.503944 AGTCAGGTAAGATCCTAGGAAAAGA 58.496 40.000 17.30 2.99 35.87 2.52
2294 2526 6.381707 AGTCAGGTAAGATCCTAGGAAAAGAC 59.618 42.308 17.30 14.16 35.87 3.01
2295 2527 6.154706 GTCAGGTAAGATCCTAGGAAAAGACA 59.845 42.308 17.30 0.00 35.87 3.41
2296 2528 6.903534 TCAGGTAAGATCCTAGGAAAAGACAT 59.096 38.462 17.30 7.06 35.87 3.06
2297 2529 6.989169 CAGGTAAGATCCTAGGAAAAGACATG 59.011 42.308 17.30 15.09 35.87 3.21
2298 2530 6.674419 AGGTAAGATCCTAGGAAAAGACATGT 59.326 38.462 17.30 0.00 35.87 3.21
2299 2531 6.763610 GGTAAGATCCTAGGAAAAGACATGTG 59.236 42.308 17.30 0.00 0.00 3.21
2300 2532 5.365021 AGATCCTAGGAAAAGACATGTGG 57.635 43.478 17.30 0.00 0.00 4.17
2301 2533 4.164988 AGATCCTAGGAAAAGACATGTGGG 59.835 45.833 17.30 0.00 0.00 4.61
2302 2534 3.256704 TCCTAGGAAAAGACATGTGGGT 58.743 45.455 9.71 0.00 0.00 4.51
2303 2535 3.655777 TCCTAGGAAAAGACATGTGGGTT 59.344 43.478 9.71 0.00 0.00 4.11
2304 2536 4.847512 TCCTAGGAAAAGACATGTGGGTTA 59.152 41.667 9.71 0.00 0.00 2.85
2305 2537 5.045869 TCCTAGGAAAAGACATGTGGGTTAG 60.046 44.000 9.71 0.00 0.00 2.34
2306 2538 4.034285 AGGAAAAGACATGTGGGTTAGG 57.966 45.455 1.15 0.00 0.00 2.69
2307 2539 3.089284 GGAAAAGACATGTGGGTTAGGG 58.911 50.000 1.15 0.00 0.00 3.53
2308 2540 2.215942 AAAGACATGTGGGTTAGGGC 57.784 50.000 1.15 0.00 0.00 5.19
2309 2541 0.331616 AAGACATGTGGGTTAGGGCC 59.668 55.000 1.15 0.00 0.00 5.80
2318 2550 3.757836 GGTTAGGGCCCACTGAAAA 57.242 52.632 27.56 5.03 0.00 2.29
2319 2551 1.545841 GGTTAGGGCCCACTGAAAAG 58.454 55.000 27.56 0.00 0.00 2.27
2320 2552 1.074889 GGTTAGGGCCCACTGAAAAGA 59.925 52.381 27.56 0.00 0.00 2.52
2321 2553 2.490168 GGTTAGGGCCCACTGAAAAGAA 60.490 50.000 27.56 0.15 0.00 2.52
2322 2554 3.227614 GTTAGGGCCCACTGAAAAGAAA 58.772 45.455 27.56 0.00 0.00 2.52
2323 2555 2.470057 AGGGCCCACTGAAAAGAAAA 57.530 45.000 27.56 0.00 0.00 2.29
2324 2556 2.758130 AGGGCCCACTGAAAAGAAAAA 58.242 42.857 27.56 0.00 0.00 1.94
2325 2557 2.434336 AGGGCCCACTGAAAAGAAAAAC 59.566 45.455 27.56 0.00 0.00 2.43
2326 2558 2.434336 GGGCCCACTGAAAAGAAAAACT 59.566 45.455 19.95 0.00 0.00 2.66
2327 2559 3.457234 GGCCCACTGAAAAGAAAAACTG 58.543 45.455 0.00 0.00 0.00 3.16
2328 2560 3.118775 GGCCCACTGAAAAGAAAAACTGT 60.119 43.478 0.00 0.00 0.00 3.55
2329 2561 4.503910 GCCCACTGAAAAGAAAAACTGTT 58.496 39.130 0.00 0.00 0.00 3.16
2330 2562 4.329801 GCCCACTGAAAAGAAAAACTGTTG 59.670 41.667 0.00 0.00 0.00 3.33
2331 2563 5.719173 CCCACTGAAAAGAAAAACTGTTGA 58.281 37.500 0.00 0.00 0.00 3.18
2332 2564 6.162777 CCCACTGAAAAGAAAAACTGTTGAA 58.837 36.000 0.00 0.00 0.00 2.69
2333 2565 6.818142 CCCACTGAAAAGAAAAACTGTTGAAT 59.182 34.615 0.00 0.00 0.00 2.57
2334 2566 7.201548 CCCACTGAAAAGAAAAACTGTTGAATG 60.202 37.037 0.00 0.00 0.00 2.67
2335 2567 7.545265 CCACTGAAAAGAAAAACTGTTGAATGA 59.455 33.333 0.00 0.00 0.00 2.57
2336 2568 9.090692 CACTGAAAAGAAAAACTGTTGAATGAT 57.909 29.630 0.00 0.00 0.00 2.45
2337 2569 9.657419 ACTGAAAAGAAAAACTGTTGAATGATT 57.343 25.926 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.586425 AGCTTTGGACTTAGCTTTGCA 58.414 42.857 0.00 0.00 45.03 4.08
200 201 4.002982 AGCATCGTCTATCTTGTTGCAAA 58.997 39.130 0.00 0.00 0.00 3.68
328 329 1.963338 CTAGCTTGGCGCATAGGGC 60.963 63.158 10.83 5.82 42.61 5.19
397 398 0.872388 GTGCGGTTGGTAACTTCTGG 59.128 55.000 0.00 0.00 37.61 3.86
885 903 7.392418 AGAGATCTTTGATGTTGAAGATGTCA 58.608 34.615 19.02 0.00 46.71 3.58
1233 1333 0.322975 GCCTGGAGACTTTGAGCAGA 59.677 55.000 0.00 0.00 0.00 4.26
1300 1425 3.382832 CGGAGGAGGCAGGACGTT 61.383 66.667 0.00 0.00 0.00 3.99
1339 1464 2.708216 TGTCTGTCTGTTTTGGCTCA 57.292 45.000 0.00 0.00 0.00 4.26
1415 1553 3.379445 GGCTCGGGTGGTCTTCGA 61.379 66.667 0.00 0.00 0.00 3.71
1537 1720 1.152652 TGCAAAAGAGGGGGCGAAA 60.153 52.632 0.00 0.00 0.00 3.46
1541 1733 1.177401 CTTAGTGCAAAAGAGGGGGC 58.823 55.000 4.40 0.00 0.00 5.80
1712 1911 2.612972 GGTCTTGATGTTCTTCTCCGCA 60.613 50.000 0.00 0.00 0.00 5.69
1841 2068 4.202357 ACCACAAGATAGTCACACATGTGT 60.202 41.667 25.76 25.76 45.76 3.72
1863 2090 6.619801 AACATGAGAGAAACACTAAACCAC 57.380 37.500 0.00 0.00 0.00 4.16
1942 2174 3.252701 GCCGATCTTTCACGATAGGAGTA 59.747 47.826 4.45 0.00 38.12 2.59
1949 2181 1.146263 GGGGCCGATCTTTCACGAT 59.854 57.895 0.00 0.00 0.00 3.73
1979 2211 1.144057 CAGGACCCGTGATGTAGGC 59.856 63.158 0.00 0.00 0.00 3.93
1990 2222 1.990614 GAGACACCTCCCAGGACCC 60.991 68.421 0.00 0.00 37.67 4.46
1991 2223 3.715015 GAGACACCTCCCAGGACC 58.285 66.667 0.00 0.00 37.67 4.46
1999 2231 1.849976 AACGACGACGGAGACACCTC 61.850 60.000 12.58 0.00 44.46 3.85
2000 2232 1.450531 AAACGACGACGGAGACACCT 61.451 55.000 12.58 0.00 44.46 4.00
2001 2233 1.000736 GAAACGACGACGGAGACACC 61.001 60.000 12.58 0.00 44.46 4.16
2002 2234 1.000736 GGAAACGACGACGGAGACAC 61.001 60.000 12.58 0.00 44.46 3.67
2003 2235 1.283793 GGAAACGACGACGGAGACA 59.716 57.895 12.58 0.00 44.46 3.41
2004 2236 0.109412 ATGGAAACGACGACGGAGAC 60.109 55.000 12.58 0.10 44.46 3.36
2005 2237 0.109458 CATGGAAACGACGACGGAGA 60.109 55.000 12.58 0.00 44.46 3.71
2006 2238 1.683790 GCATGGAAACGACGACGGAG 61.684 60.000 12.58 0.00 44.46 4.63
2007 2239 1.735198 GCATGGAAACGACGACGGA 60.735 57.895 12.58 0.00 44.46 4.69
2008 2240 1.289109 AAGCATGGAAACGACGACGG 61.289 55.000 12.58 0.00 44.46 4.79
2009 2241 0.093026 GAAGCATGGAAACGACGACG 59.907 55.000 5.58 5.58 45.75 5.12
2010 2242 0.442699 GGAAGCATGGAAACGACGAC 59.557 55.000 0.00 0.00 0.00 4.34
2011 2243 0.672401 GGGAAGCATGGAAACGACGA 60.672 55.000 0.00 0.00 0.00 4.20
2012 2244 0.673644 AGGGAAGCATGGAAACGACG 60.674 55.000 0.00 0.00 0.00 5.12
2013 2245 1.087501 GAGGGAAGCATGGAAACGAC 58.912 55.000 0.00 0.00 0.00 4.34
2014 2246 0.391130 CGAGGGAAGCATGGAAACGA 60.391 55.000 0.00 0.00 0.00 3.85
2015 2247 1.982073 GCGAGGGAAGCATGGAAACG 61.982 60.000 0.00 0.00 34.19 3.60
2016 2248 1.803289 GCGAGGGAAGCATGGAAAC 59.197 57.895 0.00 0.00 34.19 2.78
2017 2249 1.745115 CGCGAGGGAAGCATGGAAA 60.745 57.895 0.00 0.00 34.19 3.13
2018 2250 2.125147 CGCGAGGGAAGCATGGAA 60.125 61.111 0.00 0.00 34.19 3.53
2030 2262 0.108804 ACAACTACACCATCCGCGAG 60.109 55.000 8.23 0.00 0.00 5.03
2031 2263 0.319083 AACAACTACACCATCCGCGA 59.681 50.000 8.23 0.00 0.00 5.87
2032 2264 0.719465 GAACAACTACACCATCCGCG 59.281 55.000 0.00 0.00 0.00 6.46
2033 2265 1.084289 GGAACAACTACACCATCCGC 58.916 55.000 0.00 0.00 0.00 5.54
2034 2266 2.742053 CAAGGAACAACTACACCATCCG 59.258 50.000 0.00 0.00 32.22 4.18
2035 2267 3.081804 CCAAGGAACAACTACACCATCC 58.918 50.000 0.00 0.00 0.00 3.51
2036 2268 2.488153 GCCAAGGAACAACTACACCATC 59.512 50.000 0.00 0.00 0.00 3.51
2037 2269 2.514803 GCCAAGGAACAACTACACCAT 58.485 47.619 0.00 0.00 0.00 3.55
2038 2270 1.812324 CGCCAAGGAACAACTACACCA 60.812 52.381 0.00 0.00 0.00 4.17
2039 2271 0.872388 CGCCAAGGAACAACTACACC 59.128 55.000 0.00 0.00 0.00 4.16
2040 2272 0.237498 GCGCCAAGGAACAACTACAC 59.763 55.000 0.00 0.00 0.00 2.90
2041 2273 0.107831 AGCGCCAAGGAACAACTACA 59.892 50.000 2.29 0.00 0.00 2.74
2042 2274 1.069227 CAAGCGCCAAGGAACAACTAC 60.069 52.381 2.29 0.00 0.00 2.73
2043 2275 1.234821 CAAGCGCCAAGGAACAACTA 58.765 50.000 2.29 0.00 0.00 2.24
2044 2276 2.032981 CAAGCGCCAAGGAACAACT 58.967 52.632 2.29 0.00 0.00 3.16
2045 2277 1.661509 GCAAGCGCCAAGGAACAAC 60.662 57.895 2.29 0.00 0.00 3.32
2046 2278 2.124060 TGCAAGCGCCAAGGAACAA 61.124 52.632 2.29 0.00 37.32 2.83
2047 2279 2.518112 TGCAAGCGCCAAGGAACA 60.518 55.556 2.29 0.00 37.32 3.18
2048 2280 2.050077 GTGCAAGCGCCAAGGAAC 60.050 61.111 2.29 0.00 37.32 3.62
2049 2281 2.203337 AGTGCAAGCGCCAAGGAA 60.203 55.556 2.29 0.00 37.32 3.36
2050 2282 2.669569 GAGTGCAAGCGCCAAGGA 60.670 61.111 2.29 0.00 37.32 3.36
2051 2283 3.741476 GGAGTGCAAGCGCCAAGG 61.741 66.667 2.29 0.00 37.32 3.61
2052 2284 2.670934 AGGAGTGCAAGCGCCAAG 60.671 61.111 2.29 0.00 37.32 3.61
2053 2285 2.669569 GAGGAGTGCAAGCGCCAA 60.670 61.111 2.29 0.00 37.32 4.52
2054 2286 4.704833 GGAGGAGTGCAAGCGCCA 62.705 66.667 2.29 0.00 37.32 5.69
2055 2287 4.400961 AGGAGGAGTGCAAGCGCC 62.401 66.667 2.29 0.00 37.32 6.53
2056 2288 2.817396 GAGGAGGAGTGCAAGCGC 60.817 66.667 0.00 0.00 39.24 5.92
2057 2289 0.809241 GATGAGGAGGAGTGCAAGCG 60.809 60.000 0.00 0.00 0.00 4.68
2058 2290 0.251354 TGATGAGGAGGAGTGCAAGC 59.749 55.000 0.00 0.00 0.00 4.01
2059 2291 2.485124 GGATGATGAGGAGGAGTGCAAG 60.485 54.545 0.00 0.00 0.00 4.01
2060 2292 1.487976 GGATGATGAGGAGGAGTGCAA 59.512 52.381 0.00 0.00 0.00 4.08
2061 2293 1.126488 GGATGATGAGGAGGAGTGCA 58.874 55.000 0.00 0.00 0.00 4.57
2062 2294 0.033228 CGGATGATGAGGAGGAGTGC 59.967 60.000 0.00 0.00 0.00 4.40
2063 2295 0.033228 GCGGATGATGAGGAGGAGTG 59.967 60.000 0.00 0.00 0.00 3.51
2064 2296 0.397675 TGCGGATGATGAGGAGGAGT 60.398 55.000 0.00 0.00 0.00 3.85
2065 2297 0.317799 CTGCGGATGATGAGGAGGAG 59.682 60.000 0.00 0.00 0.00 3.69
2066 2298 0.397675 ACTGCGGATGATGAGGAGGA 60.398 55.000 0.00 0.00 0.00 3.71
2067 2299 0.249784 CACTGCGGATGATGAGGAGG 60.250 60.000 0.00 0.00 0.00 4.30
2068 2300 0.463204 ACACTGCGGATGATGAGGAG 59.537 55.000 0.00 0.00 0.00 3.69
2069 2301 0.904649 AACACTGCGGATGATGAGGA 59.095 50.000 0.00 0.00 0.00 3.71
2070 2302 1.293924 GAACACTGCGGATGATGAGG 58.706 55.000 0.00 0.00 0.00 3.86
2071 2303 1.293924 GGAACACTGCGGATGATGAG 58.706 55.000 0.00 0.00 0.00 2.90
2072 2304 0.460109 CGGAACACTGCGGATGATGA 60.460 55.000 0.00 0.00 31.86 2.92
2073 2305 0.460109 TCGGAACACTGCGGATGATG 60.460 55.000 0.00 0.00 36.95 3.07
2074 2306 0.460284 GTCGGAACACTGCGGATGAT 60.460 55.000 0.00 0.00 36.95 2.45
2075 2307 1.080093 GTCGGAACACTGCGGATGA 60.080 57.895 0.00 0.00 36.95 2.92
2076 2308 2.444624 CGTCGGAACACTGCGGATG 61.445 63.158 0.00 0.00 36.95 3.51
2077 2309 1.945354 ATCGTCGGAACACTGCGGAT 61.945 55.000 0.00 0.00 36.95 4.18
2078 2310 1.307355 TATCGTCGGAACACTGCGGA 61.307 55.000 0.00 0.00 36.95 5.54
2079 2311 1.138036 TATCGTCGGAACACTGCGG 59.862 57.895 0.00 0.00 36.95 5.69
2080 2312 0.455464 TGTATCGTCGGAACACTGCG 60.455 55.000 0.00 0.00 37.81 5.18
2081 2313 1.922570 ATGTATCGTCGGAACACTGC 58.077 50.000 3.22 0.00 0.00 4.40
2082 2314 3.425525 GCATATGTATCGTCGGAACACTG 59.574 47.826 4.29 5.69 0.00 3.66
2083 2315 3.067601 TGCATATGTATCGTCGGAACACT 59.932 43.478 4.29 0.00 0.00 3.55
2084 2316 3.377439 TGCATATGTATCGTCGGAACAC 58.623 45.455 4.29 0.00 0.00 3.32
2085 2317 3.719173 TGCATATGTATCGTCGGAACA 57.281 42.857 4.29 3.58 0.00 3.18
2086 2318 3.181530 GCATGCATATGTATCGTCGGAAC 60.182 47.826 14.21 0.00 36.65 3.62
2087 2319 2.993220 GCATGCATATGTATCGTCGGAA 59.007 45.455 14.21 0.00 36.65 4.30
2088 2320 2.029470 TGCATGCATATGTATCGTCGGA 60.029 45.455 18.46 0.00 36.65 4.55
2089 2321 2.092681 GTGCATGCATATGTATCGTCGG 59.907 50.000 25.64 0.00 36.65 4.79
2090 2322 2.730928 TGTGCATGCATATGTATCGTCG 59.269 45.455 25.64 0.00 36.65 5.12
2091 2323 3.422214 CGTGTGCATGCATATGTATCGTC 60.422 47.826 25.64 7.17 36.65 4.20
2092 2324 2.476241 CGTGTGCATGCATATGTATCGT 59.524 45.455 25.64 0.00 36.65 3.73
2093 2325 2.730928 TCGTGTGCATGCATATGTATCG 59.269 45.455 28.88 22.08 36.65 2.92
2094 2326 3.989817 TCTCGTGTGCATGCATATGTATC 59.010 43.478 28.88 14.40 36.65 2.24
2095 2327 3.992427 CTCTCGTGTGCATGCATATGTAT 59.008 43.478 28.88 1.99 36.65 2.29
2096 2328 3.383761 CTCTCGTGTGCATGCATATGTA 58.616 45.455 28.88 19.71 36.65 2.29
2097 2329 2.207590 CTCTCGTGTGCATGCATATGT 58.792 47.619 28.88 0.00 36.65 2.29
2098 2330 1.529865 CCTCTCGTGTGCATGCATATG 59.470 52.381 25.64 25.75 37.36 1.78
2099 2331 1.541889 CCCTCTCGTGTGCATGCATAT 60.542 52.381 25.64 0.00 0.00 1.78
2100 2332 0.179076 CCCTCTCGTGTGCATGCATA 60.179 55.000 25.64 19.63 0.00 3.14
2101 2333 1.450848 CCCTCTCGTGTGCATGCAT 60.451 57.895 25.64 0.00 0.00 3.96
2102 2334 2.046988 CCCTCTCGTGTGCATGCA 60.047 61.111 18.46 18.46 0.00 3.96
2103 2335 2.821366 CCCCTCTCGTGTGCATGC 60.821 66.667 11.82 11.82 0.00 4.06
2104 2336 1.742880 CACCCCTCTCGTGTGCATG 60.743 63.158 0.00 0.00 0.00 4.06
2105 2337 2.172483 GACACCCCTCTCGTGTGCAT 62.172 60.000 0.00 0.00 44.34 3.96
2106 2338 2.842462 ACACCCCTCTCGTGTGCA 60.842 61.111 0.00 0.00 42.75 4.57
2107 2339 2.048127 GACACCCCTCTCGTGTGC 60.048 66.667 0.00 0.00 44.34 4.57
2108 2340 0.319900 CTTGACACCCCTCTCGTGTG 60.320 60.000 0.00 0.00 44.34 3.82
2109 2341 0.759436 ACTTGACACCCCTCTCGTGT 60.759 55.000 0.00 0.00 46.91 4.49
2110 2342 1.202582 CTACTTGACACCCCTCTCGTG 59.797 57.143 0.00 0.00 37.26 4.35
2111 2343 1.203025 ACTACTTGACACCCCTCTCGT 60.203 52.381 0.00 0.00 0.00 4.18
2112 2344 1.546961 ACTACTTGACACCCCTCTCG 58.453 55.000 0.00 0.00 0.00 4.04
2113 2345 4.583907 GGTATACTACTTGACACCCCTCTC 59.416 50.000 2.25 0.00 0.00 3.20
2114 2346 4.016851 TGGTATACTACTTGACACCCCTCT 60.017 45.833 2.25 0.00 0.00 3.69
2115 2347 4.284178 TGGTATACTACTTGACACCCCTC 58.716 47.826 2.25 0.00 0.00 4.30
2116 2348 4.341863 TGGTATACTACTTGACACCCCT 57.658 45.455 2.25 0.00 0.00 4.79
2117 2349 4.040095 GGATGGTATACTACTTGACACCCC 59.960 50.000 2.25 0.00 0.00 4.95
2118 2350 4.900054 AGGATGGTATACTACTTGACACCC 59.100 45.833 2.25 0.00 0.00 4.61
2119 2351 5.278364 CGAGGATGGTATACTACTTGACACC 60.278 48.000 2.25 0.00 0.00 4.16
2120 2352 5.530171 TCGAGGATGGTATACTACTTGACAC 59.470 44.000 2.25 0.00 0.00 3.67
2121 2353 5.687780 TCGAGGATGGTATACTACTTGACA 58.312 41.667 2.25 0.00 0.00 3.58
2122 2354 6.294065 CCTTCGAGGATGGTATACTACTTGAC 60.294 46.154 2.25 0.00 37.67 3.18
2123 2355 5.768662 CCTTCGAGGATGGTATACTACTTGA 59.231 44.000 2.25 0.00 37.67 3.02
2124 2356 5.047943 CCCTTCGAGGATGGTATACTACTTG 60.048 48.000 2.25 0.00 37.67 3.16
2125 2357 5.078256 CCCTTCGAGGATGGTATACTACTT 58.922 45.833 2.25 0.00 37.67 2.24
2126 2358 4.508763 CCCCTTCGAGGATGGTATACTACT 60.509 50.000 2.25 0.00 37.67 2.57
2127 2359 3.762823 CCCCTTCGAGGATGGTATACTAC 59.237 52.174 2.25 0.00 37.67 2.73
2128 2360 3.816842 GCCCCTTCGAGGATGGTATACTA 60.817 52.174 2.25 0.00 37.67 1.82
2129 2361 2.890814 CCCCTTCGAGGATGGTATACT 58.109 52.381 2.25 0.00 37.67 2.12
2130 2362 1.275573 GCCCCTTCGAGGATGGTATAC 59.724 57.143 0.00 0.00 37.67 1.47
2131 2363 1.640917 GCCCCTTCGAGGATGGTATA 58.359 55.000 0.00 0.00 37.67 1.47
2132 2364 1.128188 GGCCCCTTCGAGGATGGTAT 61.128 60.000 0.00 0.00 37.67 2.73
2133 2365 1.764854 GGCCCCTTCGAGGATGGTA 60.765 63.158 0.00 0.00 37.67 3.25
2134 2366 3.090532 GGCCCCTTCGAGGATGGT 61.091 66.667 0.00 0.00 37.67 3.55
2135 2367 2.615227 CTTGGCCCCTTCGAGGATGG 62.615 65.000 0.00 0.00 37.67 3.51
2136 2368 1.153086 CTTGGCCCCTTCGAGGATG 60.153 63.158 0.00 0.00 37.67 3.51
2137 2369 1.616628 ACTTGGCCCCTTCGAGGAT 60.617 57.895 0.00 0.00 37.67 3.24
2138 2370 2.203938 ACTTGGCCCCTTCGAGGA 60.204 61.111 0.00 0.00 37.67 3.71
2139 2371 2.045926 CACTTGGCCCCTTCGAGG 60.046 66.667 0.00 0.00 34.30 4.63
2140 2372 1.078848 CTCACTTGGCCCCTTCGAG 60.079 63.158 0.00 0.00 0.00 4.04
2141 2373 3.068881 CTCACTTGGCCCCTTCGA 58.931 61.111 0.00 0.00 0.00 3.71
2142 2374 2.747855 GCTCACTTGGCCCCTTCG 60.748 66.667 0.00 0.00 0.00 3.79
2143 2375 1.973812 GTGCTCACTTGGCCCCTTC 60.974 63.158 0.00 0.00 0.00 3.46
2144 2376 2.116125 GTGCTCACTTGGCCCCTT 59.884 61.111 0.00 0.00 0.00 3.95
2145 2377 4.335647 CGTGCTCACTTGGCCCCT 62.336 66.667 0.00 0.00 0.00 4.79
2146 2378 4.643387 ACGTGCTCACTTGGCCCC 62.643 66.667 0.00 0.00 0.00 5.80
2147 2379 2.725203 TACACGTGCTCACTTGGCCC 62.725 60.000 17.22 0.00 35.21 5.80
2148 2380 0.882927 TTACACGTGCTCACTTGGCC 60.883 55.000 17.22 0.00 35.21 5.36
2149 2381 0.941542 TTTACACGTGCTCACTTGGC 59.058 50.000 17.22 0.00 35.21 4.52
2150 2382 1.531149 CCTTTACACGTGCTCACTTGG 59.469 52.381 17.22 5.33 35.21 3.61
2151 2383 2.476619 CTCCTTTACACGTGCTCACTTG 59.523 50.000 17.22 5.15 36.73 3.16
2152 2384 2.364324 TCTCCTTTACACGTGCTCACTT 59.636 45.455 17.22 0.00 0.00 3.16
2153 2385 1.961394 TCTCCTTTACACGTGCTCACT 59.039 47.619 17.22 0.00 0.00 3.41
2154 2386 2.433868 TCTCCTTTACACGTGCTCAC 57.566 50.000 17.22 0.00 0.00 3.51
2155 2387 2.560981 TCATCTCCTTTACACGTGCTCA 59.439 45.455 17.22 0.00 0.00 4.26
2156 2388 3.232213 TCATCTCCTTTACACGTGCTC 57.768 47.619 17.22 0.00 0.00 4.26
2157 2389 3.895232 ATCATCTCCTTTACACGTGCT 57.105 42.857 17.22 5.64 0.00 4.40
2158 2390 3.932710 TGAATCATCTCCTTTACACGTGC 59.067 43.478 17.22 0.00 0.00 5.34
2159 2391 4.330074 GGTGAATCATCTCCTTTACACGTG 59.670 45.833 15.48 15.48 36.49 4.49
2160 2392 4.223032 AGGTGAATCATCTCCTTTACACGT 59.777 41.667 0.00 0.00 45.13 4.49
2161 2393 4.759782 AGGTGAATCATCTCCTTTACACG 58.240 43.478 0.00 0.00 45.13 4.49
2181 2413 5.745227 ACATCTACTTGACATACCCAAAGG 58.255 41.667 0.00 0.00 40.04 3.11
2182 2414 6.403636 GCAACATCTACTTGACATACCCAAAG 60.404 42.308 0.00 0.00 0.00 2.77
2183 2415 5.414454 GCAACATCTACTTGACATACCCAAA 59.586 40.000 0.00 0.00 0.00 3.28
2184 2416 4.941263 GCAACATCTACTTGACATACCCAA 59.059 41.667 0.00 0.00 0.00 4.12
2185 2417 4.019771 TGCAACATCTACTTGACATACCCA 60.020 41.667 0.00 0.00 0.00 4.51
2186 2418 4.332819 GTGCAACATCTACTTGACATACCC 59.667 45.833 0.00 0.00 36.32 3.69
2187 2419 4.032900 CGTGCAACATCTACTTGACATACC 59.967 45.833 0.00 0.00 35.74 2.73
2188 2420 4.625742 ACGTGCAACATCTACTTGACATAC 59.374 41.667 0.00 0.00 35.74 2.39
2189 2421 4.625311 CACGTGCAACATCTACTTGACATA 59.375 41.667 0.82 0.00 35.74 2.29
2190 2422 3.433274 CACGTGCAACATCTACTTGACAT 59.567 43.478 0.82 0.00 35.74 3.06
2191 2423 2.799978 CACGTGCAACATCTACTTGACA 59.200 45.455 0.82 0.00 35.74 3.58
2192 2424 2.800544 ACACGTGCAACATCTACTTGAC 59.199 45.455 17.22 0.00 35.74 3.18
2193 2425 3.057019 GACACGTGCAACATCTACTTGA 58.943 45.455 17.22 0.00 35.74 3.02
2194 2426 2.799978 TGACACGTGCAACATCTACTTG 59.200 45.455 17.22 0.00 35.74 3.16
2195 2427 2.800544 GTGACACGTGCAACATCTACTT 59.199 45.455 17.22 0.00 35.74 2.24
2196 2428 2.035961 AGTGACACGTGCAACATCTACT 59.964 45.455 17.22 8.55 35.74 2.57
2197 2429 2.404215 AGTGACACGTGCAACATCTAC 58.596 47.619 17.22 6.53 35.74 2.59
2198 2430 2.672714 GAGTGACACGTGCAACATCTA 58.327 47.619 17.22 0.00 35.74 1.98
2199 2431 1.502231 GAGTGACACGTGCAACATCT 58.498 50.000 17.22 12.54 35.74 2.90
2200 2432 0.161658 CGAGTGACACGTGCAACATC 59.838 55.000 17.22 5.76 35.74 3.06
2201 2433 1.831389 GCGAGTGACACGTGCAACAT 61.831 55.000 17.22 4.37 35.74 2.71
2202 2434 2.521771 GCGAGTGACACGTGCAACA 61.522 57.895 17.22 10.95 35.74 3.33
2203 2435 2.245532 GCGAGTGACACGTGCAAC 59.754 61.111 17.22 14.22 0.00 4.17
2204 2436 2.964925 GGCGAGTGACACGTGCAA 60.965 61.111 17.22 0.00 0.00 4.08
2205 2437 4.214327 TGGCGAGTGACACGTGCA 62.214 61.111 17.22 12.06 0.00 4.57
2206 2438 3.406361 CTGGCGAGTGACACGTGC 61.406 66.667 17.22 14.42 0.00 5.34
2207 2439 1.080501 ATCTGGCGAGTGACACGTG 60.081 57.895 15.48 15.48 0.00 4.49
2208 2440 1.080501 CATCTGGCGAGTGACACGT 60.081 57.895 4.12 0.00 0.00 4.49
2209 2441 1.807165 CCATCTGGCGAGTGACACG 60.807 63.158 0.00 0.00 0.00 4.49
2210 2442 0.737715 GTCCATCTGGCGAGTGACAC 60.738 60.000 0.00 0.00 34.44 3.67
2211 2443 0.900182 AGTCCATCTGGCGAGTGACA 60.900 55.000 14.31 0.00 34.44 3.58
2212 2444 0.179124 GAGTCCATCTGGCGAGTGAC 60.179 60.000 0.00 2.09 34.44 3.67
2213 2445 0.323816 AGAGTCCATCTGGCGAGTGA 60.324 55.000 0.00 0.00 36.69 3.41
2214 2446 0.534412 AAGAGTCCATCTGGCGAGTG 59.466 55.000 0.00 0.00 38.67 3.51
2215 2447 0.534412 CAAGAGTCCATCTGGCGAGT 59.466 55.000 0.00 0.00 38.67 4.18
2216 2448 0.820226 TCAAGAGTCCATCTGGCGAG 59.180 55.000 0.00 0.00 38.67 5.03
2217 2449 0.532573 GTCAAGAGTCCATCTGGCGA 59.467 55.000 0.00 0.00 38.67 5.54
2218 2450 0.247460 TGTCAAGAGTCCATCTGGCG 59.753 55.000 0.00 0.00 38.67 5.69
2219 2451 2.286872 CATGTCAAGAGTCCATCTGGC 58.713 52.381 0.00 0.00 38.67 4.85
2220 2452 2.238144 ACCATGTCAAGAGTCCATCTGG 59.762 50.000 0.00 0.00 38.67 3.86
2221 2453 3.055602 TCACCATGTCAAGAGTCCATCTG 60.056 47.826 0.00 0.00 38.67 2.90
2222 2454 3.176411 TCACCATGTCAAGAGTCCATCT 58.824 45.455 0.00 0.00 41.27 2.90
2223 2455 3.616956 TCACCATGTCAAGAGTCCATC 57.383 47.619 0.00 0.00 0.00 3.51
2224 2456 3.265221 ACATCACCATGTCAAGAGTCCAT 59.735 43.478 0.00 0.00 39.15 3.41
2225 2457 2.639347 ACATCACCATGTCAAGAGTCCA 59.361 45.455 0.00 0.00 39.15 4.02
2226 2458 3.340814 ACATCACCATGTCAAGAGTCC 57.659 47.619 0.00 0.00 39.15 3.85
2238 2470 2.369860 GAGCATCCTATGGACATCACCA 59.630 50.000 0.00 0.00 44.41 4.17
2239 2471 3.051081 GAGCATCCTATGGACATCACC 57.949 52.381 0.00 0.00 32.98 4.02
2257 2489 0.534412 ACCTGACTCTTGATGCGGAG 59.466 55.000 0.00 0.00 35.86 4.63
2258 2490 1.847328 TACCTGACTCTTGATGCGGA 58.153 50.000 0.00 0.00 0.00 5.54
2259 2491 2.166459 TCTTACCTGACTCTTGATGCGG 59.834 50.000 0.00 0.00 0.00 5.69
2260 2492 3.510388 TCTTACCTGACTCTTGATGCG 57.490 47.619 0.00 0.00 0.00 4.73
2261 2493 4.100808 AGGATCTTACCTGACTCTTGATGC 59.899 45.833 0.00 0.00 39.01 3.91
2262 2494 5.867903 AGGATCTTACCTGACTCTTGATG 57.132 43.478 0.00 0.00 39.01 3.07
2263 2495 6.074648 CCTAGGATCTTACCTGACTCTTGAT 58.925 44.000 1.05 0.00 40.81 2.57
2264 2496 5.193930 TCCTAGGATCTTACCTGACTCTTGA 59.806 44.000 7.62 0.00 40.81 3.02
2265 2497 5.450453 TCCTAGGATCTTACCTGACTCTTG 58.550 45.833 7.62 0.00 40.81 3.02
2266 2498 5.735733 TCCTAGGATCTTACCTGACTCTT 57.264 43.478 7.62 0.00 40.81 2.85
2267 2499 5.735733 TTCCTAGGATCTTACCTGACTCT 57.264 43.478 13.57 0.00 40.81 3.24
2268 2500 6.608002 TCTTTTCCTAGGATCTTACCTGACTC 59.392 42.308 13.57 0.00 40.81 3.36
2269 2501 6.381707 GTCTTTTCCTAGGATCTTACCTGACT 59.618 42.308 13.57 0.00 40.81 3.41
2270 2502 6.154706 TGTCTTTTCCTAGGATCTTACCTGAC 59.845 42.308 13.57 12.26 40.81 3.51
2271 2503 6.261435 TGTCTTTTCCTAGGATCTTACCTGA 58.739 40.000 13.57 0.45 40.81 3.86
2272 2504 6.546428 TGTCTTTTCCTAGGATCTTACCTG 57.454 41.667 13.57 0.00 40.81 4.00
2273 2505 6.674419 ACATGTCTTTTCCTAGGATCTTACCT 59.326 38.462 13.57 0.00 43.32 3.08
2274 2506 6.763610 CACATGTCTTTTCCTAGGATCTTACC 59.236 42.308 13.57 0.21 0.00 2.85
2275 2507 6.763610 CCACATGTCTTTTCCTAGGATCTTAC 59.236 42.308 13.57 9.79 0.00 2.34
2276 2508 6.126768 CCCACATGTCTTTTCCTAGGATCTTA 60.127 42.308 13.57 0.00 0.00 2.10
2277 2509 5.339530 CCCACATGTCTTTTCCTAGGATCTT 60.340 44.000 13.57 0.00 0.00 2.40
2278 2510 4.164988 CCCACATGTCTTTTCCTAGGATCT 59.835 45.833 13.57 0.00 0.00 2.75
2279 2511 4.080299 ACCCACATGTCTTTTCCTAGGATC 60.080 45.833 13.57 2.22 0.00 3.36
2280 2512 3.852578 ACCCACATGTCTTTTCCTAGGAT 59.147 43.478 13.57 0.00 0.00 3.24
2281 2513 3.256704 ACCCACATGTCTTTTCCTAGGA 58.743 45.455 7.62 7.62 0.00 2.94
2282 2514 3.721087 ACCCACATGTCTTTTCCTAGG 57.279 47.619 0.82 0.82 0.00 3.02
2283 2515 5.186198 CCTAACCCACATGTCTTTTCCTAG 58.814 45.833 0.00 0.00 0.00 3.02
2284 2516 4.018779 CCCTAACCCACATGTCTTTTCCTA 60.019 45.833 0.00 0.00 0.00 2.94
2285 2517 3.245264 CCCTAACCCACATGTCTTTTCCT 60.245 47.826 0.00 0.00 0.00 3.36
2286 2518 3.089284 CCCTAACCCACATGTCTTTTCC 58.911 50.000 0.00 0.00 0.00 3.13
2287 2519 2.492088 GCCCTAACCCACATGTCTTTTC 59.508 50.000 0.00 0.00 0.00 2.29
2288 2520 2.525368 GCCCTAACCCACATGTCTTTT 58.475 47.619 0.00 0.00 0.00 2.27
2289 2521 1.272480 GGCCCTAACCCACATGTCTTT 60.272 52.381 0.00 0.00 0.00 2.52
2290 2522 0.331616 GGCCCTAACCCACATGTCTT 59.668 55.000 0.00 0.00 0.00 3.01
2291 2523 1.999346 GGCCCTAACCCACATGTCT 59.001 57.895 0.00 0.00 0.00 3.41
2292 2524 4.657952 GGCCCTAACCCACATGTC 57.342 61.111 0.00 0.00 0.00 3.06
2300 2532 1.074889 TCTTTTCAGTGGGCCCTAACC 59.925 52.381 25.70 8.33 0.00 2.85
2301 2533 2.579410 TCTTTTCAGTGGGCCCTAAC 57.421 50.000 25.70 14.47 0.00 2.34
2302 2534 3.603965 TTTCTTTTCAGTGGGCCCTAA 57.396 42.857 25.70 9.37 0.00 2.69
2303 2535 3.603965 TTTTCTTTTCAGTGGGCCCTA 57.396 42.857 25.70 6.58 0.00 3.53
2304 2536 2.434336 GTTTTTCTTTTCAGTGGGCCCT 59.566 45.455 25.70 0.00 0.00 5.19
2305 2537 2.434336 AGTTTTTCTTTTCAGTGGGCCC 59.566 45.455 17.59 17.59 0.00 5.80
2306 2538 3.118775 ACAGTTTTTCTTTTCAGTGGGCC 60.119 43.478 0.00 0.00 0.00 5.80
2307 2539 4.123497 ACAGTTTTTCTTTTCAGTGGGC 57.877 40.909 0.00 0.00 0.00 5.36
2308 2540 5.719173 TCAACAGTTTTTCTTTTCAGTGGG 58.281 37.500 0.00 0.00 0.00 4.61
2309 2541 7.545265 TCATTCAACAGTTTTTCTTTTCAGTGG 59.455 33.333 0.00 0.00 0.00 4.00
2310 2542 8.464770 TCATTCAACAGTTTTTCTTTTCAGTG 57.535 30.769 0.00 0.00 0.00 3.66
2311 2543 9.657419 AATCATTCAACAGTTTTTCTTTTCAGT 57.343 25.926 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.