Multiple sequence alignment - TraesCS2A01G244400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G244400 chr2A 100.000 2369 0 0 1 2369 349225902 349223534 0.000000e+00 4375.0
1 TraesCS2A01G244400 chr2A 98.747 958 11 1 598 1554 590787112 590786155 0.000000e+00 1701.0
2 TraesCS2A01G244400 chr2A 90.476 252 17 3 2118 2369 397630057 397630301 2.270000e-85 326.0
3 TraesCS2A01G244400 chr1B 99.041 1773 16 1 598 2369 235381986 235383758 0.000000e+00 3179.0
4 TraesCS2A01G244400 chr7B 99.062 959 7 2 596 1554 721298084 721299040 0.000000e+00 1720.0
5 TraesCS2A01G244400 chr7B 99.506 809 4 0 1561 2369 495191890 495191082 0.000000e+00 1472.0
6 TraesCS2A01G244400 chr7B 99.382 809 5 0 1561 2369 7017228 7018036 0.000000e+00 1467.0
7 TraesCS2A01G244400 chr3B 99.157 949 7 1 607 1554 793118618 793119566 0.000000e+00 1707.0
8 TraesCS2A01G244400 chr3B 98.537 957 13 1 599 1554 169349155 169348199 0.000000e+00 1688.0
9 TraesCS2A01G244400 chr6A 98.642 957 12 1 598 1554 462594587 462593632 0.000000e+00 1694.0
10 TraesCS2A01G244400 chr6A 99.506 809 4 0 1561 2369 606314357 606315165 0.000000e+00 1472.0
11 TraesCS2A01G244400 chr6A 85.503 338 39 9 1 335 352704445 352704115 6.270000e-91 344.0
12 TraesCS2A01G244400 chr6A 91.071 112 9 1 590 700 606313460 606313571 1.470000e-32 150.0
13 TraesCS2A01G244400 chr6A 84.722 144 18 4 591 731 589949718 589949860 8.830000e-30 141.0
14 TraesCS2A01G244400 chr6B 98.434 958 14 1 598 1554 474539979 474540936 0.000000e+00 1685.0
15 TraesCS2A01G244400 chr6B 98.105 950 15 3 607 1554 232741620 232742568 0.000000e+00 1652.0
16 TraesCS2A01G244400 chr6B 87.421 159 14 5 597 751 463395132 463395288 6.730000e-41 178.0
17 TraesCS2A01G244400 chr6B 84.713 157 23 1 597 753 690994571 690994416 3.150000e-34 156.0
18 TraesCS2A01G244400 chr3A 98.734 948 11 1 608 1554 721633093 721632146 0.000000e+00 1683.0
19 TraesCS2A01G244400 chr3A 84.726 347 46 6 3 345 352648644 352648987 8.110000e-90 340.0
20 TraesCS2A01G244400 chr4A 99.506 809 4 0 1561 2369 104128806 104127998 0.000000e+00 1472.0
21 TraesCS2A01G244400 chr4A 86.066 488 61 7 1629 2110 351156014 351155528 3.490000e-143 518.0
22 TraesCS2A01G244400 chr4A 75.246 610 110 34 1 599 56381865 56382444 3.910000e-63 252.0
23 TraesCS2A01G244400 chr4A 79.762 252 41 7 241 492 122117449 122117208 8.700000e-40 174.0
24 TraesCS2A01G244400 chr7A 86.146 563 56 18 1561 2110 11259209 11259762 2.620000e-164 588.0
25 TraesCS2A01G244400 chr7A 87.611 339 39 3 262 599 336068013 336067677 7.940000e-105 390.0
26 TraesCS2A01G244400 chr7A 87.021 339 38 6 1 337 374758730 374759064 6.180000e-101 377.0
27 TraesCS2A01G244400 chr7A 86.095 338 41 6 1 337 374767017 374767349 2.240000e-95 359.0
28 TraesCS2A01G244400 chr7A 84.573 363 47 6 243 599 336212845 336212486 3.750000e-93 351.0
29 TraesCS2A01G244400 chr3D 85.660 530 63 11 1588 2110 368184639 368184116 1.600000e-151 545.0
30 TraesCS2A01G244400 chr3D 91.700 253 13 6 2118 2369 141503822 141504067 6.270000e-91 344.0
31 TraesCS2A01G244400 chr5D 85.864 382 48 3 1705 2083 74363040 74362662 3.670000e-108 401.0
32 TraesCS2A01G244400 chr5A 87.164 335 39 4 1 334 319022632 319022301 6.180000e-101 377.0
33 TraesCS2A01G244400 chr1A 84.514 381 48 11 1 376 201278572 201278198 1.340000e-97 366.0
34 TraesCS2A01G244400 chr1A 84.085 377 51 9 1 374 132525923 132526293 2.900000e-94 355.0
35 TraesCS2A01G244400 chr1A 84.438 347 44 10 1 343 251996301 251996641 1.360000e-87 333.0
36 TraesCS2A01G244400 chr1A 83.898 354 49 8 1 351 309152521 309152173 4.880000e-87 331.0
37 TraesCS2A01G244400 chr1A 88.827 179 17 2 597 773 58297924 58297747 1.430000e-52 217.0
38 TraesCS2A01G244400 chr5B 91.700 253 13 6 2118 2369 71791499 71791744 6.270000e-91 344.0
39 TraesCS2A01G244400 chr2B 92.000 250 12 5 2121 2369 127154753 127154511 6.270000e-91 344.0
40 TraesCS2A01G244400 chr2B 71.835 387 81 25 1 373 228882769 228883141 4.200000e-13 86.1
41 TraesCS2A01G244400 chr4B 86.667 150 18 2 598 745 1878436 1878585 5.240000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G244400 chr2A 349223534 349225902 2368 True 4375 4375 100.0000 1 2369 1 chr2A.!!$R1 2368
1 TraesCS2A01G244400 chr2A 590786155 590787112 957 True 1701 1701 98.7470 598 1554 1 chr2A.!!$R2 956
2 TraesCS2A01G244400 chr1B 235381986 235383758 1772 False 3179 3179 99.0410 598 2369 1 chr1B.!!$F1 1771
3 TraesCS2A01G244400 chr7B 721298084 721299040 956 False 1720 1720 99.0620 596 1554 1 chr7B.!!$F2 958
4 TraesCS2A01G244400 chr7B 495191082 495191890 808 True 1472 1472 99.5060 1561 2369 1 chr7B.!!$R1 808
5 TraesCS2A01G244400 chr7B 7017228 7018036 808 False 1467 1467 99.3820 1561 2369 1 chr7B.!!$F1 808
6 TraesCS2A01G244400 chr3B 793118618 793119566 948 False 1707 1707 99.1570 607 1554 1 chr3B.!!$F1 947
7 TraesCS2A01G244400 chr3B 169348199 169349155 956 True 1688 1688 98.5370 599 1554 1 chr3B.!!$R1 955
8 TraesCS2A01G244400 chr6A 462593632 462594587 955 True 1694 1694 98.6420 598 1554 1 chr6A.!!$R2 956
9 TraesCS2A01G244400 chr6A 606313460 606315165 1705 False 811 1472 95.2885 590 2369 2 chr6A.!!$F2 1779
10 TraesCS2A01G244400 chr6B 474539979 474540936 957 False 1685 1685 98.4340 598 1554 1 chr6B.!!$F3 956
11 TraesCS2A01G244400 chr6B 232741620 232742568 948 False 1652 1652 98.1050 607 1554 1 chr6B.!!$F1 947
12 TraesCS2A01G244400 chr3A 721632146 721633093 947 True 1683 1683 98.7340 608 1554 1 chr3A.!!$R1 946
13 TraesCS2A01G244400 chr4A 104127998 104128806 808 True 1472 1472 99.5060 1561 2369 1 chr4A.!!$R1 808
14 TraesCS2A01G244400 chr4A 56381865 56382444 579 False 252 252 75.2460 1 599 1 chr4A.!!$F1 598
15 TraesCS2A01G244400 chr7A 11259209 11259762 553 False 588 588 86.1460 1561 2110 1 chr7A.!!$F1 549
16 TraesCS2A01G244400 chr3D 368184116 368184639 523 True 545 545 85.6600 1588 2110 1 chr3D.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 521 0.039472 TGGGGGTCCACATGTCATTG 59.961 55.0 0.0 0.0 38.32 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1657 2242 0.746659 GGCTTTTGTGTTGGAGCTGT 59.253 50.0 0.0 0.0 35.53 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.745116 GGGGGAACACAATAAATAACATAGC 58.255 40.000 0.00 0.00 0.00 2.97
46 47 8.254508 GGGGAACACAATAAATAACATAGCAAA 58.745 33.333 0.00 0.00 0.00 3.68
47 48 9.646427 GGGAACACAATAAATAACATAGCAAAA 57.354 29.630 0.00 0.00 0.00 2.44
67 68 5.351233 AAACAATTGCATCACAAAGCATG 57.649 34.783 5.05 0.00 42.86 4.06
68 69 3.331150 ACAATTGCATCACAAAGCATGG 58.669 40.909 5.05 0.00 42.86 3.66
77 78 0.397187 ACAAAGCATGGCATGGCAAA 59.603 45.000 27.04 3.46 0.00 3.68
79 80 1.198178 CAAAGCATGGCATGGCAAAAC 59.802 47.619 27.04 17.53 0.00 2.43
80 81 0.397187 AAGCATGGCATGGCAAAACA 59.603 45.000 27.04 1.72 0.00 2.83
81 82 0.616371 AGCATGGCATGGCAAAACAT 59.384 45.000 27.04 6.23 0.00 2.71
82 83 1.003812 AGCATGGCATGGCAAAACATT 59.996 42.857 27.04 5.40 0.00 2.71
87 88 1.227639 GCATGGCAAAACATTGTGCA 58.772 45.000 8.96 0.00 42.74 4.57
89 90 2.350007 GCATGGCAAAACATTGTGCAAG 60.350 45.455 8.96 0.00 42.74 4.01
93 94 1.866601 GCAAAACATTGTGCAAGGGAC 59.133 47.619 1.74 0.00 40.58 4.46
107 108 2.181021 GGACGACCCTACGCAGTG 59.819 66.667 0.00 0.00 45.73 3.66
111 112 1.226603 CGACCCTACGCAGTGCTAC 60.227 63.158 14.33 0.00 45.73 3.58
112 113 1.888018 GACCCTACGCAGTGCTACA 59.112 57.895 14.33 0.00 45.73 2.74
113 114 0.458025 GACCCTACGCAGTGCTACAC 60.458 60.000 14.33 0.00 45.73 2.90
114 115 1.183030 ACCCTACGCAGTGCTACACA 61.183 55.000 14.33 0.00 45.73 3.72
115 116 0.175760 CCCTACGCAGTGCTACACAT 59.824 55.000 14.33 0.00 45.73 3.21
116 117 1.405526 CCCTACGCAGTGCTACACATT 60.406 52.381 14.33 0.00 45.73 2.71
117 118 1.660607 CCTACGCAGTGCTACACATTG 59.339 52.381 14.33 0.00 45.73 2.82
122 123 2.888513 CAGTGCTACACATTGCAGAC 57.111 50.000 0.00 0.00 40.06 3.51
123 124 1.127397 CAGTGCTACACATTGCAGACG 59.873 52.381 0.00 0.00 40.06 4.18
124 125 1.000843 AGTGCTACACATTGCAGACGA 59.999 47.619 0.00 0.00 40.06 4.20
125 126 1.798223 GTGCTACACATTGCAGACGAA 59.202 47.619 0.00 0.00 40.06 3.85
126 127 2.068519 TGCTACACATTGCAGACGAAG 58.931 47.619 0.00 0.00 34.84 3.79
127 128 1.201965 GCTACACATTGCAGACGAAGC 60.202 52.381 0.00 0.00 0.00 3.86
128 129 2.068519 CTACACATTGCAGACGAAGCA 58.931 47.619 0.00 0.00 40.85 3.91
129 130 1.527034 ACACATTGCAGACGAAGCAT 58.473 45.000 0.00 0.00 42.33 3.79
130 131 2.698803 ACACATTGCAGACGAAGCATA 58.301 42.857 0.00 0.00 42.33 3.14
131 132 3.073678 ACACATTGCAGACGAAGCATAA 58.926 40.909 0.00 0.00 42.33 1.90
132 133 3.501828 ACACATTGCAGACGAAGCATAAA 59.498 39.130 0.00 0.00 42.33 1.40
133 134 4.023279 ACACATTGCAGACGAAGCATAAAA 60.023 37.500 0.00 0.00 42.33 1.52
134 135 5.097529 CACATTGCAGACGAAGCATAAAAT 58.902 37.500 0.00 0.00 42.33 1.82
135 136 5.574055 CACATTGCAGACGAAGCATAAAATT 59.426 36.000 0.00 0.00 42.33 1.82
136 137 6.746822 CACATTGCAGACGAAGCATAAAATTA 59.253 34.615 0.00 0.00 42.33 1.40
137 138 7.273164 CACATTGCAGACGAAGCATAAAATTAA 59.727 33.333 0.00 0.00 42.33 1.40
138 139 7.273381 ACATTGCAGACGAAGCATAAAATTAAC 59.727 33.333 0.00 0.00 42.33 2.01
139 140 6.494893 TGCAGACGAAGCATAAAATTAACT 57.505 33.333 0.00 0.00 37.02 2.24
140 141 6.314018 TGCAGACGAAGCATAAAATTAACTG 58.686 36.000 0.00 0.00 37.02 3.16
141 142 5.739161 GCAGACGAAGCATAAAATTAACTGG 59.261 40.000 0.00 0.00 0.00 4.00
142 143 6.403200 GCAGACGAAGCATAAAATTAACTGGA 60.403 38.462 0.00 0.00 0.00 3.86
143 144 7.526608 CAGACGAAGCATAAAATTAACTGGAA 58.473 34.615 0.00 0.00 0.00 3.53
144 145 7.481798 CAGACGAAGCATAAAATTAACTGGAAC 59.518 37.037 0.00 0.00 0.00 3.62
145 146 6.311723 ACGAAGCATAAAATTAACTGGAACG 58.688 36.000 0.00 0.00 0.00 3.95
146 147 6.072893 ACGAAGCATAAAATTAACTGGAACGT 60.073 34.615 0.00 0.00 0.00 3.99
147 148 6.799925 CGAAGCATAAAATTAACTGGAACGTT 59.200 34.615 0.00 0.00 0.00 3.99
148 149 7.325097 CGAAGCATAAAATTAACTGGAACGTTT 59.675 33.333 0.46 0.00 0.00 3.60
149 150 8.880878 AAGCATAAAATTAACTGGAACGTTTT 57.119 26.923 0.46 0.00 0.00 2.43
150 151 8.515473 AGCATAAAATTAACTGGAACGTTTTC 57.485 30.769 0.46 0.00 0.00 2.29
158 159 3.851620 GGAACGTTTTCCCGGTTTC 57.148 52.632 0.46 0.00 45.27 2.78
159 160 1.023502 GGAACGTTTTCCCGGTTTCA 58.976 50.000 0.46 0.00 45.27 2.69
160 161 1.404748 GGAACGTTTTCCCGGTTTCAA 59.595 47.619 0.46 0.00 45.27 2.69
161 162 2.159268 GGAACGTTTTCCCGGTTTCAAA 60.159 45.455 0.46 0.00 45.27 2.69
162 163 2.565210 ACGTTTTCCCGGTTTCAAAC 57.435 45.000 0.00 2.94 0.00 2.93
163 164 1.817447 ACGTTTTCCCGGTTTCAAACA 59.183 42.857 1.93 0.00 0.00 2.83
164 165 2.427812 ACGTTTTCCCGGTTTCAAACAT 59.572 40.909 1.93 0.00 0.00 2.71
165 166 3.047093 CGTTTTCCCGGTTTCAAACATC 58.953 45.455 1.93 0.00 0.00 3.06
166 167 3.243267 CGTTTTCCCGGTTTCAAACATCT 60.243 43.478 1.93 0.00 0.00 2.90
167 168 4.048504 GTTTTCCCGGTTTCAAACATCTG 58.951 43.478 1.93 0.00 0.00 2.90
168 169 2.649531 TCCCGGTTTCAAACATCTGT 57.350 45.000 1.93 0.00 0.00 3.41
169 170 2.500229 TCCCGGTTTCAAACATCTGTC 58.500 47.619 1.93 0.00 0.00 3.51
170 171 2.158740 TCCCGGTTTCAAACATCTGTCA 60.159 45.455 1.93 0.00 0.00 3.58
171 172 2.226437 CCCGGTTTCAAACATCTGTCAG 59.774 50.000 1.93 0.00 0.00 3.51
172 173 3.138304 CCGGTTTCAAACATCTGTCAGA 58.862 45.455 4.68 4.68 0.00 3.27
173 174 3.058914 CCGGTTTCAAACATCTGTCAGAC 60.059 47.826 4.21 0.00 0.00 3.51
174 175 3.559655 CGGTTTCAAACATCTGTCAGACA 59.440 43.478 4.21 2.48 0.00 3.41
185 186 1.627864 TGTCAGACAGATGAACCGGA 58.372 50.000 9.46 0.00 0.00 5.14
186 187 1.546029 TGTCAGACAGATGAACCGGAG 59.454 52.381 9.46 0.00 0.00 4.63
207 208 2.730550 GGAAGGTTCCATGTTTGCAG 57.269 50.000 3.73 0.00 46.76 4.41
208 209 1.963515 GGAAGGTTCCATGTTTGCAGT 59.036 47.619 3.73 0.00 46.76 4.40
209 210 2.288395 GGAAGGTTCCATGTTTGCAGTG 60.288 50.000 3.73 0.00 46.76 3.66
210 211 0.675633 AGGTTCCATGTTTGCAGTGC 59.324 50.000 8.58 8.58 0.00 4.40
211 212 0.675633 GGTTCCATGTTTGCAGTGCT 59.324 50.000 17.60 0.00 0.00 4.40
212 213 1.603678 GGTTCCATGTTTGCAGTGCTG 60.604 52.381 17.60 5.46 0.00 4.41
213 214 0.675083 TTCCATGTTTGCAGTGCTGG 59.325 50.000 17.60 14.97 0.00 4.85
214 215 0.178995 TCCATGTTTGCAGTGCTGGA 60.179 50.000 16.75 16.75 30.16 3.86
215 216 0.242825 CCATGTTTGCAGTGCTGGAG 59.757 55.000 17.60 1.49 31.08 3.86
216 217 0.242825 CATGTTTGCAGTGCTGGAGG 59.757 55.000 17.60 0.00 31.08 4.30
217 218 1.530013 ATGTTTGCAGTGCTGGAGGC 61.530 55.000 17.60 1.57 42.22 4.70
226 227 4.536316 GCTGGAGGCATCTGACAG 57.464 61.111 0.00 0.00 41.35 3.51
227 228 1.153208 GCTGGAGGCATCTGACAGG 60.153 63.158 1.81 0.00 41.35 4.00
228 229 1.908340 GCTGGAGGCATCTGACAGGT 61.908 60.000 1.81 0.00 41.35 4.00
229 230 1.489481 CTGGAGGCATCTGACAGGTA 58.511 55.000 1.81 0.00 0.00 3.08
230 231 2.045524 CTGGAGGCATCTGACAGGTAT 58.954 52.381 1.81 0.00 0.00 2.73
231 232 1.764723 TGGAGGCATCTGACAGGTATG 59.235 52.381 1.81 1.19 0.00 2.39
232 233 1.765314 GGAGGCATCTGACAGGTATGT 59.235 52.381 1.81 0.00 44.31 2.29
233 234 2.484417 GGAGGCATCTGACAGGTATGTG 60.484 54.545 1.81 0.00 40.68 3.21
234 235 1.487976 AGGCATCTGACAGGTATGTGG 59.512 52.381 1.81 0.00 40.68 4.17
235 236 1.486310 GGCATCTGACAGGTATGTGGA 59.514 52.381 1.81 0.00 40.68 4.02
236 237 2.105477 GGCATCTGACAGGTATGTGGAT 59.895 50.000 1.81 0.00 40.68 3.41
237 238 3.324846 GGCATCTGACAGGTATGTGGATA 59.675 47.826 1.81 0.00 40.68 2.59
238 239 4.562347 GGCATCTGACAGGTATGTGGATAG 60.562 50.000 1.81 0.00 40.68 2.08
239 240 4.039730 GCATCTGACAGGTATGTGGATAGT 59.960 45.833 1.81 0.00 40.68 2.12
240 241 5.536260 CATCTGACAGGTATGTGGATAGTG 58.464 45.833 1.81 0.00 40.68 2.74
241 242 4.610333 TCTGACAGGTATGTGGATAGTGT 58.390 43.478 1.81 0.00 40.68 3.55
242 243 5.762279 TCTGACAGGTATGTGGATAGTGTA 58.238 41.667 1.81 0.00 40.68 2.90
243 244 6.373759 TCTGACAGGTATGTGGATAGTGTAT 58.626 40.000 1.81 0.00 40.68 2.29
244 245 6.839134 TCTGACAGGTATGTGGATAGTGTATT 59.161 38.462 1.81 0.00 40.68 1.89
245 246 7.014326 TCTGACAGGTATGTGGATAGTGTATTC 59.986 40.741 1.81 0.00 40.68 1.75
246 247 6.085555 ACAGGTATGTGGATAGTGTATTCG 57.914 41.667 0.00 0.00 38.57 3.34
247 248 5.010719 ACAGGTATGTGGATAGTGTATTCGG 59.989 44.000 0.00 0.00 38.57 4.30
248 249 4.527038 AGGTATGTGGATAGTGTATTCGGG 59.473 45.833 0.00 0.00 0.00 5.14
249 250 4.282703 GGTATGTGGATAGTGTATTCGGGT 59.717 45.833 0.00 0.00 0.00 5.28
250 251 5.221581 GGTATGTGGATAGTGTATTCGGGTT 60.222 44.000 0.00 0.00 0.00 4.11
251 252 4.395959 TGTGGATAGTGTATTCGGGTTC 57.604 45.455 0.00 0.00 0.00 3.62
252 253 4.028131 TGTGGATAGTGTATTCGGGTTCT 58.972 43.478 0.00 0.00 0.00 3.01
253 254 4.468510 TGTGGATAGTGTATTCGGGTTCTT 59.531 41.667 0.00 0.00 0.00 2.52
254 255 5.048507 GTGGATAGTGTATTCGGGTTCTTC 58.951 45.833 0.00 0.00 0.00 2.87
255 256 4.960469 TGGATAGTGTATTCGGGTTCTTCT 59.040 41.667 0.00 0.00 0.00 2.85
256 257 5.068723 TGGATAGTGTATTCGGGTTCTTCTC 59.931 44.000 0.00 0.00 0.00 2.87
257 258 5.068723 GGATAGTGTATTCGGGTTCTTCTCA 59.931 44.000 0.00 0.00 0.00 3.27
258 259 6.239345 GGATAGTGTATTCGGGTTCTTCTCAT 60.239 42.308 0.00 0.00 0.00 2.90
259 260 5.422214 AGTGTATTCGGGTTCTTCTCATT 57.578 39.130 0.00 0.00 0.00 2.57
260 261 5.805728 AGTGTATTCGGGTTCTTCTCATTT 58.194 37.500 0.00 0.00 0.00 2.32
261 262 6.238648 AGTGTATTCGGGTTCTTCTCATTTT 58.761 36.000 0.00 0.00 0.00 1.82
262 263 6.715264 AGTGTATTCGGGTTCTTCTCATTTTT 59.285 34.615 0.00 0.00 0.00 1.94
263 264 7.021790 GTGTATTCGGGTTCTTCTCATTTTTC 58.978 38.462 0.00 0.00 0.00 2.29
264 265 6.940298 TGTATTCGGGTTCTTCTCATTTTTCT 59.060 34.615 0.00 0.00 0.00 2.52
265 266 5.689383 TTCGGGTTCTTCTCATTTTTCTG 57.311 39.130 0.00 0.00 0.00 3.02
266 267 4.968259 TCGGGTTCTTCTCATTTTTCTGA 58.032 39.130 0.00 0.00 0.00 3.27
267 268 5.560724 TCGGGTTCTTCTCATTTTTCTGAT 58.439 37.500 0.00 0.00 0.00 2.90
268 269 5.643777 TCGGGTTCTTCTCATTTTTCTGATC 59.356 40.000 0.00 0.00 0.00 2.92
269 270 5.412594 CGGGTTCTTCTCATTTTTCTGATCA 59.587 40.000 0.00 0.00 0.00 2.92
270 271 6.072508 CGGGTTCTTCTCATTTTTCTGATCAA 60.073 38.462 0.00 0.00 0.00 2.57
271 272 7.087007 GGGTTCTTCTCATTTTTCTGATCAAC 58.913 38.462 0.00 0.00 0.00 3.18
272 273 7.040132 GGGTTCTTCTCATTTTTCTGATCAACT 60.040 37.037 0.00 0.00 0.00 3.16
273 274 8.355913 GGTTCTTCTCATTTTTCTGATCAACTT 58.644 33.333 0.00 0.00 0.00 2.66
274 275 9.741647 GTTCTTCTCATTTTTCTGATCAACTTT 57.258 29.630 0.00 0.00 0.00 2.66
275 276 9.956720 TTCTTCTCATTTTTCTGATCAACTTTC 57.043 29.630 0.00 0.00 0.00 2.62
276 277 9.123902 TCTTCTCATTTTTCTGATCAACTTTCA 57.876 29.630 0.00 0.00 0.00 2.69
277 278 9.909644 CTTCTCATTTTTCTGATCAACTTTCAT 57.090 29.630 0.00 0.00 0.00 2.57
278 279 9.687210 TTCTCATTTTTCTGATCAACTTTCATG 57.313 29.630 0.00 0.00 0.00 3.07
279 280 8.853126 TCTCATTTTTCTGATCAACTTTCATGT 58.147 29.630 0.00 0.00 0.00 3.21
306 307 7.573968 AAAACTTTTTCATCTGAGCTACTGT 57.426 32.000 0.00 0.00 0.00 3.55
307 308 7.573968 AAACTTTTTCATCTGAGCTACTGTT 57.426 32.000 0.00 0.00 0.00 3.16
308 309 7.573968 AACTTTTTCATCTGAGCTACTGTTT 57.426 32.000 0.00 0.00 0.00 2.83
309 310 8.677148 AACTTTTTCATCTGAGCTACTGTTTA 57.323 30.769 0.00 0.00 0.00 2.01
310 311 8.854614 ACTTTTTCATCTGAGCTACTGTTTAT 57.145 30.769 0.00 0.00 0.00 1.40
311 312 9.289782 ACTTTTTCATCTGAGCTACTGTTTATT 57.710 29.630 0.00 0.00 0.00 1.40
315 316 9.507329 TTTCATCTGAGCTACTGTTTATTTTCT 57.493 29.630 0.00 0.00 0.00 2.52
401 402 9.880157 TGAAAACAGAATATACTAAGTGTACCC 57.120 33.333 0.00 0.00 33.45 3.69
402 403 9.880157 GAAAACAGAATATACTAAGTGTACCCA 57.120 33.333 0.00 0.00 33.45 4.51
403 404 9.886132 AAAACAGAATATACTAAGTGTACCCAG 57.114 33.333 0.00 0.00 33.45 4.45
404 405 7.598759 ACAGAATATACTAAGTGTACCCAGG 57.401 40.000 0.00 0.00 33.45 4.45
405 406 6.553852 ACAGAATATACTAAGTGTACCCAGGG 59.446 42.308 2.85 2.85 33.45 4.45
406 407 6.014499 CAGAATATACTAAGTGTACCCAGGGG 60.014 46.154 11.37 6.87 42.03 4.79
418 419 1.670059 CCCAGGGGTTTCCTAACTCT 58.330 55.000 0.00 0.00 46.12 3.24
419 420 2.841795 CCCAGGGGTTTCCTAACTCTA 58.158 52.381 0.00 0.00 46.12 2.43
420 421 2.504585 CCCAGGGGTTTCCTAACTCTAC 59.495 54.545 0.00 0.00 46.12 2.59
421 422 3.451890 CCAGGGGTTTCCTAACTCTACT 58.548 50.000 0.00 0.00 46.12 2.57
422 423 3.197983 CCAGGGGTTTCCTAACTCTACTG 59.802 52.174 0.00 0.00 46.12 2.74
423 424 3.838903 CAGGGGTTTCCTAACTCTACTGT 59.161 47.826 0.00 0.00 46.12 3.55
424 425 5.021458 CAGGGGTTTCCTAACTCTACTGTA 58.979 45.833 0.00 0.00 46.12 2.74
425 426 5.661759 CAGGGGTTTCCTAACTCTACTGTAT 59.338 44.000 0.00 0.00 46.12 2.29
426 427 5.661759 AGGGGTTTCCTAACTCTACTGTATG 59.338 44.000 0.00 0.00 45.98 2.39
427 428 5.163332 GGGGTTTCCTAACTCTACTGTATGG 60.163 48.000 0.00 0.00 35.00 2.74
428 429 5.358090 GGTTTCCTAACTCTACTGTATGGC 58.642 45.833 0.00 0.00 34.59 4.40
429 430 5.105064 GGTTTCCTAACTCTACTGTATGGCA 60.105 44.000 0.00 0.00 34.59 4.92
430 431 6.403878 GTTTCCTAACTCTACTGTATGGCAA 58.596 40.000 0.00 0.00 0.00 4.52
431 432 5.593679 TCCTAACTCTACTGTATGGCAAC 57.406 43.478 0.00 0.00 0.00 4.17
432 433 5.269991 TCCTAACTCTACTGTATGGCAACT 58.730 41.667 0.00 0.00 37.61 3.16
433 434 5.127194 TCCTAACTCTACTGTATGGCAACTG 59.873 44.000 0.00 0.00 37.61 3.16
434 435 5.127194 CCTAACTCTACTGTATGGCAACTGA 59.873 44.000 0.00 0.00 37.61 3.41
435 436 4.727507 ACTCTACTGTATGGCAACTGAG 57.272 45.455 0.00 0.00 37.61 3.35
436 437 3.449018 ACTCTACTGTATGGCAACTGAGG 59.551 47.826 0.00 0.00 37.61 3.86
437 438 2.168521 TCTACTGTATGGCAACTGAGGC 59.831 50.000 0.00 0.00 37.61 4.70
447 448 4.008933 ACTGAGGCCTCGGTGTGC 62.009 66.667 40.49 12.48 46.62 4.57
448 449 3.699894 CTGAGGCCTCGGTGTGCT 61.700 66.667 30.58 0.00 0.00 4.40
449 450 3.947132 CTGAGGCCTCGGTGTGCTG 62.947 68.421 30.58 5.68 0.00 4.41
450 451 3.695606 GAGGCCTCGGTGTGCTGA 61.696 66.667 19.06 0.00 0.00 4.26
451 452 3.655810 GAGGCCTCGGTGTGCTGAG 62.656 68.421 19.06 0.00 45.43 3.35
452 453 4.008933 GGCCTCGGTGTGCTGAGT 62.009 66.667 0.00 0.00 44.61 3.41
453 454 2.433318 GCCTCGGTGTGCTGAGTC 60.433 66.667 3.20 0.00 44.61 3.36
454 455 3.051210 CCTCGGTGTGCTGAGTCA 58.949 61.111 0.00 0.00 44.61 3.41
455 456 1.593787 CCTCGGTGTGCTGAGTCAT 59.406 57.895 0.00 0.00 44.61 3.06
456 457 0.459237 CCTCGGTGTGCTGAGTCATC 60.459 60.000 0.00 0.00 44.61 2.92
457 458 0.244721 CTCGGTGTGCTGAGTCATCA 59.755 55.000 0.00 0.00 41.91 3.07
458 459 0.678950 TCGGTGTGCTGAGTCATCAA 59.321 50.000 0.00 0.00 34.23 2.57
459 460 1.073964 CGGTGTGCTGAGTCATCAAG 58.926 55.000 0.00 0.00 34.23 3.02
460 461 1.606480 CGGTGTGCTGAGTCATCAAGT 60.606 52.381 0.00 0.00 34.23 3.16
461 462 2.072298 GGTGTGCTGAGTCATCAAGTC 58.928 52.381 0.00 0.00 34.23 3.01
462 463 2.548707 GGTGTGCTGAGTCATCAAGTCA 60.549 50.000 0.00 0.00 34.23 3.41
463 464 3.133691 GTGTGCTGAGTCATCAAGTCAA 58.866 45.455 0.00 0.00 36.88 3.18
464 465 3.059325 GTGTGCTGAGTCATCAAGTCAAC 60.059 47.826 0.00 0.00 36.88 3.18
465 466 3.133691 GTGCTGAGTCATCAAGTCAACA 58.866 45.455 0.00 0.00 36.88 3.33
466 467 3.186001 GTGCTGAGTCATCAAGTCAACAG 59.814 47.826 0.00 0.00 34.79 3.16
467 468 3.181462 TGCTGAGTCATCAAGTCAACAGT 60.181 43.478 0.00 0.00 36.88 3.55
468 469 3.431572 GCTGAGTCATCAAGTCAACAGTC 59.568 47.826 0.00 0.00 36.88 3.51
469 470 4.625028 CTGAGTCATCAAGTCAACAGTCA 58.375 43.478 0.00 0.00 36.88 3.41
470 471 5.022282 TGAGTCATCAAGTCAACAGTCAA 57.978 39.130 0.00 0.00 34.30 3.18
471 472 4.811024 TGAGTCATCAAGTCAACAGTCAAC 59.189 41.667 0.00 0.00 34.30 3.18
472 473 3.804325 AGTCATCAAGTCAACAGTCAACG 59.196 43.478 0.00 0.00 0.00 4.10
473 474 3.555956 GTCATCAAGTCAACAGTCAACGT 59.444 43.478 0.00 0.00 0.00 3.99
474 475 4.034048 GTCATCAAGTCAACAGTCAACGTT 59.966 41.667 0.00 0.00 0.00 3.99
475 476 4.033932 TCATCAAGTCAACAGTCAACGTTG 59.966 41.667 22.35 22.35 44.11 4.10
486 487 1.658994 TCAACGTTGACTGGGTTGAC 58.341 50.000 26.53 0.00 43.52 3.18
487 488 0.661020 CAACGTTGACTGGGTTGACC 59.339 55.000 23.90 0.00 42.70 4.02
488 489 4.321937 TCAACGTTGACTGGGTTGACCA 62.322 50.000 26.53 0.00 43.52 4.02
489 490 0.463116 ACGTTGACTGGGTTGACCAC 60.463 55.000 2.12 0.00 46.80 4.16
490 491 0.179056 CGTTGACTGGGTTGACCACT 60.179 55.000 2.12 0.00 46.80 4.00
491 492 1.069513 CGTTGACTGGGTTGACCACTA 59.930 52.381 2.12 0.00 46.80 2.74
492 493 2.490991 GTTGACTGGGTTGACCACTAC 58.509 52.381 2.12 0.00 46.80 2.73
493 494 1.796017 TGACTGGGTTGACCACTACA 58.204 50.000 2.12 0.00 46.80 2.74
494 495 1.691976 TGACTGGGTTGACCACTACAG 59.308 52.381 2.12 2.95 46.80 2.74
495 496 1.692519 GACTGGGTTGACCACTACAGT 59.307 52.381 8.83 8.83 46.80 3.55
496 497 1.416401 ACTGGGTTGACCACTACAGTG 59.584 52.381 8.42 2.23 46.80 3.66
497 498 0.107831 TGGGTTGACCACTACAGTGC 59.892 55.000 3.75 0.00 46.80 4.40
498 499 0.107831 GGGTTGACCACTACAGTGCA 59.892 55.000 3.75 0.00 44.34 4.57
499 500 1.271379 GGGTTGACCACTACAGTGCAT 60.271 52.381 3.75 0.00 44.34 3.96
500 501 1.806542 GGTTGACCACTACAGTGCATG 59.193 52.381 3.75 0.00 44.34 4.06
501 502 2.494059 GTTGACCACTACAGTGCATGT 58.506 47.619 3.75 0.00 44.34 3.21
502 503 2.168326 TGACCACTACAGTGCATGTG 57.832 50.000 3.75 5.02 43.80 3.21
504 505 2.858622 CCACTACAGTGCATGTGGG 58.141 57.895 17.16 8.67 44.30 4.61
505 506 0.677731 CCACTACAGTGCATGTGGGG 60.678 60.000 17.16 10.92 44.30 4.96
506 507 0.677731 CACTACAGTGCATGTGGGGG 60.678 60.000 13.97 5.38 44.30 5.40
507 508 1.133809 ACTACAGTGCATGTGGGGGT 61.134 55.000 13.97 3.95 44.30 4.95
508 509 0.392998 CTACAGTGCATGTGGGGGTC 60.393 60.000 10.77 0.00 43.80 4.46
509 510 1.847798 TACAGTGCATGTGGGGGTCC 61.848 60.000 10.77 0.00 43.80 4.46
510 511 2.858476 AGTGCATGTGGGGGTCCA 60.858 61.111 0.00 0.00 41.58 4.02
518 519 4.266939 TGGGGGTCCACATGTCAT 57.733 55.556 0.00 0.00 38.32 3.06
519 520 2.485396 TGGGGGTCCACATGTCATT 58.515 52.632 0.00 0.00 38.32 2.57
520 521 0.039472 TGGGGGTCCACATGTCATTG 59.961 55.000 0.00 0.00 38.32 2.82
521 522 0.039618 GGGGGTCCACATGTCATTGT 59.960 55.000 0.00 0.00 0.00 2.71
522 523 1.463674 GGGGTCCACATGTCATTGTC 58.536 55.000 0.00 0.00 0.00 3.18
523 524 1.004745 GGGGTCCACATGTCATTGTCT 59.995 52.381 0.00 0.00 0.00 3.41
524 525 2.238646 GGGGTCCACATGTCATTGTCTA 59.761 50.000 0.00 0.00 0.00 2.59
525 526 3.308117 GGGGTCCACATGTCATTGTCTAA 60.308 47.826 0.00 0.00 0.00 2.10
526 527 4.526970 GGGTCCACATGTCATTGTCTAAT 58.473 43.478 0.00 0.00 0.00 1.73
527 528 5.397447 GGGGTCCACATGTCATTGTCTAATA 60.397 44.000 0.00 0.00 0.00 0.98
528 529 6.299141 GGGTCCACATGTCATTGTCTAATAT 58.701 40.000 0.00 0.00 0.00 1.28
529 530 6.772716 GGGTCCACATGTCATTGTCTAATATT 59.227 38.462 0.00 0.00 0.00 1.28
530 531 7.285401 GGGTCCACATGTCATTGTCTAATATTT 59.715 37.037 0.00 0.00 0.00 1.40
531 532 9.337396 GGTCCACATGTCATTGTCTAATATTTA 57.663 33.333 0.00 0.00 0.00 1.40
556 557 6.827586 TTAAACACTATTTAGCAAGGGTGG 57.172 37.500 0.00 0.00 27.37 4.61
557 558 4.382386 AACACTATTTAGCAAGGGTGGT 57.618 40.909 0.00 0.00 39.33 4.16
558 559 4.382386 ACACTATTTAGCAAGGGTGGTT 57.618 40.909 0.00 0.00 36.66 3.67
559 560 4.332828 ACACTATTTAGCAAGGGTGGTTC 58.667 43.478 0.00 0.00 36.66 3.62
560 561 3.694566 CACTATTTAGCAAGGGTGGTTCC 59.305 47.826 0.00 0.00 36.66 3.62
561 562 2.990740 ATTTAGCAAGGGTGGTTCCA 57.009 45.000 0.00 0.00 36.66 3.53
562 563 1.989706 TTTAGCAAGGGTGGTTCCAC 58.010 50.000 12.99 12.99 36.66 4.02
563 564 0.847373 TTAGCAAGGGTGGTTCCACA 59.153 50.000 21.25 0.00 38.59 4.17
564 565 0.109723 TAGCAAGGGTGGTTCCACAC 59.890 55.000 21.25 18.61 40.40 3.82
565 566 2.551912 GCAAGGGTGGTTCCACACG 61.552 63.158 21.25 9.06 44.37 4.49
566 567 1.153046 CAAGGGTGGTTCCACACGT 60.153 57.895 21.25 14.54 44.37 4.49
567 568 1.147600 AAGGGTGGTTCCACACGTC 59.852 57.895 21.25 9.22 44.37 4.34
568 569 1.628238 AAGGGTGGTTCCACACGTCA 61.628 55.000 21.25 0.00 44.37 4.35
569 570 1.072505 GGGTGGTTCCACACGTCAT 59.927 57.895 21.25 0.00 42.23 3.06
570 571 0.536460 GGGTGGTTCCACACGTCATT 60.536 55.000 21.25 0.00 42.23 2.57
571 572 1.314730 GGTGGTTCCACACGTCATTT 58.685 50.000 21.25 0.00 42.23 2.32
572 573 1.001815 GGTGGTTCCACACGTCATTTG 60.002 52.381 21.25 0.00 42.23 2.32
573 574 0.665835 TGGTTCCACACGTCATTTGC 59.334 50.000 0.00 0.00 0.00 3.68
574 575 0.951558 GGTTCCACACGTCATTTGCT 59.048 50.000 0.00 0.00 0.00 3.91
575 576 2.147958 GGTTCCACACGTCATTTGCTA 58.852 47.619 0.00 0.00 0.00 3.49
576 577 2.747446 GGTTCCACACGTCATTTGCTAT 59.253 45.455 0.00 0.00 0.00 2.97
577 578 3.936453 GGTTCCACACGTCATTTGCTATA 59.064 43.478 0.00 0.00 0.00 1.31
578 579 4.574828 GGTTCCACACGTCATTTGCTATAT 59.425 41.667 0.00 0.00 0.00 0.86
579 580 5.065988 GGTTCCACACGTCATTTGCTATATT 59.934 40.000 0.00 0.00 0.00 1.28
580 581 5.984233 TCCACACGTCATTTGCTATATTC 57.016 39.130 0.00 0.00 0.00 1.75
581 582 5.670485 TCCACACGTCATTTGCTATATTCT 58.330 37.500 0.00 0.00 0.00 2.40
582 583 6.811954 TCCACACGTCATTTGCTATATTCTA 58.188 36.000 0.00 0.00 0.00 2.10
583 584 7.269316 TCCACACGTCATTTGCTATATTCTAA 58.731 34.615 0.00 0.00 0.00 2.10
584 585 7.931407 TCCACACGTCATTTGCTATATTCTAAT 59.069 33.333 0.00 0.00 0.00 1.73
585 586 8.559536 CCACACGTCATTTGCTATATTCTAATT 58.440 33.333 0.00 0.00 0.00 1.40
586 587 9.373750 CACACGTCATTTGCTATATTCTAATTG 57.626 33.333 0.00 0.00 0.00 2.32
587 588 9.109393 ACACGTCATTTGCTATATTCTAATTGT 57.891 29.630 0.00 0.00 0.00 2.71
714 716 1.408266 CCCTGTTTAAGTGGATCGGGG 60.408 57.143 0.00 0.00 38.19 5.73
990 1018 2.106332 CTACCGCCCGCTCGAAAT 59.894 61.111 0.00 0.00 0.00 2.17
992 1020 2.622903 CTACCGCCCGCTCGAAATGA 62.623 60.000 0.00 0.00 0.00 2.57
1311 1888 1.619654 CTTCCCATGCAGGTCAACAA 58.380 50.000 0.00 0.00 34.66 2.83
1657 2242 5.420421 AGAGTGAGCTTGCTGATTCTAACTA 59.580 40.000 5.44 0.00 0.00 2.24
1699 2286 4.836125 ACATCAACTCTTGCGATTTGTT 57.164 36.364 0.00 0.00 33.14 2.83
2097 2710 4.895668 AATTGTTTGGTGATCATGGCTT 57.104 36.364 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.469139 TTGTGATGCAATTGTTTTGCTATG 57.531 33.333 7.40 0.00 45.13 2.23
40 41 5.050227 GCTTTGTGATGCAATTGTTTTGCTA 60.050 36.000 7.40 0.00 45.13 3.49
42 43 3.969981 GCTTTGTGATGCAATTGTTTTGC 59.030 39.130 7.40 3.44 45.11 3.68
43 44 5.158101 TGCTTTGTGATGCAATTGTTTTG 57.842 34.783 7.40 0.00 36.89 2.44
46 47 3.749088 CCATGCTTTGTGATGCAATTGTT 59.251 39.130 7.40 0.00 42.74 2.83
47 48 3.331150 CCATGCTTTGTGATGCAATTGT 58.669 40.909 7.40 0.00 42.74 2.71
48 49 2.095213 GCCATGCTTTGTGATGCAATTG 59.905 45.455 0.00 0.00 42.74 2.32
51 52 0.680061 TGCCATGCTTTGTGATGCAA 59.320 45.000 0.00 0.00 42.74 4.08
52 53 0.899019 ATGCCATGCTTTGTGATGCA 59.101 45.000 0.00 0.00 43.67 3.96
53 54 1.286501 CATGCCATGCTTTGTGATGC 58.713 50.000 0.00 0.00 0.00 3.91
55 56 0.177141 GCCATGCCATGCTTTGTGAT 59.823 50.000 0.00 0.00 0.00 3.06
56 57 1.186267 TGCCATGCCATGCTTTGTGA 61.186 50.000 0.00 0.00 0.00 3.58
58 59 0.397187 TTTGCCATGCCATGCTTTGT 59.603 45.000 0.00 0.00 0.00 2.83
59 60 1.198178 GTTTTGCCATGCCATGCTTTG 59.802 47.619 0.00 0.00 0.00 2.77
60 61 1.202782 TGTTTTGCCATGCCATGCTTT 60.203 42.857 0.00 0.00 0.00 3.51
67 68 0.518195 GCACAATGTTTTGCCATGCC 59.482 50.000 0.00 0.00 36.22 4.40
68 69 1.227639 TGCACAATGTTTTGCCATGC 58.772 45.000 1.85 0.00 38.00 4.06
77 78 0.951558 GTCGTCCCTTGCACAATGTT 59.048 50.000 0.00 0.00 0.00 2.71
79 80 1.875963 GGTCGTCCCTTGCACAATG 59.124 57.895 0.00 0.00 0.00 2.82
80 81 4.397348 GGTCGTCCCTTGCACAAT 57.603 55.556 0.00 0.00 0.00 2.71
93 94 1.226603 GTAGCACTGCGTAGGGTCG 60.227 63.158 4.23 0.00 0.00 4.79
98 99 1.061131 GCAATGTGTAGCACTGCGTAG 59.939 52.381 0.00 0.00 35.11 3.51
99 100 1.075542 GCAATGTGTAGCACTGCGTA 58.924 50.000 0.00 0.00 35.11 4.42
104 105 1.000843 TCGTCTGCAATGTGTAGCACT 59.999 47.619 0.90 0.00 36.62 4.40
107 108 1.201965 GCTTCGTCTGCAATGTGTAGC 60.202 52.381 0.00 0.00 29.77 3.58
111 112 3.745332 TTATGCTTCGTCTGCAATGTG 57.255 42.857 4.23 0.00 44.01 3.21
112 113 4.764679 TTTTATGCTTCGTCTGCAATGT 57.235 36.364 4.23 0.00 44.01 2.71
113 114 7.485913 AGTTAATTTTATGCTTCGTCTGCAATG 59.514 33.333 4.23 0.00 44.01 2.82
114 115 7.485913 CAGTTAATTTTATGCTTCGTCTGCAAT 59.514 33.333 4.23 0.00 44.01 3.56
115 116 6.801377 CAGTTAATTTTATGCTTCGTCTGCAA 59.199 34.615 4.23 0.00 44.01 4.08
116 117 6.314018 CAGTTAATTTTATGCTTCGTCTGCA 58.686 36.000 0.00 0.00 44.95 4.41
117 118 5.739161 CCAGTTAATTTTATGCTTCGTCTGC 59.261 40.000 0.00 0.00 0.00 4.26
118 119 7.072177 TCCAGTTAATTTTATGCTTCGTCTG 57.928 36.000 0.00 0.00 0.00 3.51
119 120 7.527457 GTTCCAGTTAATTTTATGCTTCGTCT 58.473 34.615 0.00 0.00 0.00 4.18
120 121 6.464834 CGTTCCAGTTAATTTTATGCTTCGTC 59.535 38.462 0.00 0.00 0.00 4.20
121 122 6.072893 ACGTTCCAGTTAATTTTATGCTTCGT 60.073 34.615 0.00 0.00 0.00 3.85
122 123 6.311723 ACGTTCCAGTTAATTTTATGCTTCG 58.688 36.000 0.00 0.00 0.00 3.79
123 124 8.515473 AAACGTTCCAGTTAATTTTATGCTTC 57.485 30.769 0.00 0.00 33.41 3.86
124 125 8.880878 AAAACGTTCCAGTTAATTTTATGCTT 57.119 26.923 0.00 0.00 33.41 3.91
125 126 8.515473 GAAAACGTTCCAGTTAATTTTATGCT 57.485 30.769 0.00 0.00 33.41 3.79
141 142 2.847959 TTGAAACCGGGAAAACGTTC 57.152 45.000 6.32 0.00 0.00 3.95
142 143 2.230750 TGTTTGAAACCGGGAAAACGTT 59.769 40.909 6.32 0.00 35.71 3.99
143 144 1.817447 TGTTTGAAACCGGGAAAACGT 59.183 42.857 6.32 0.00 35.71 3.99
144 145 2.563471 TGTTTGAAACCGGGAAAACG 57.437 45.000 6.32 0.00 35.71 3.60
145 146 4.048504 CAGATGTTTGAAACCGGGAAAAC 58.951 43.478 6.32 11.13 33.98 2.43
146 147 3.702045 ACAGATGTTTGAAACCGGGAAAA 59.298 39.130 6.32 0.00 0.00 2.29
147 148 3.292460 ACAGATGTTTGAAACCGGGAAA 58.708 40.909 6.32 0.00 0.00 3.13
148 149 2.882137 GACAGATGTTTGAAACCGGGAA 59.118 45.455 6.32 0.00 0.00 3.97
149 150 2.158740 TGACAGATGTTTGAAACCGGGA 60.159 45.455 6.32 0.00 0.00 5.14
150 151 2.226330 TGACAGATGTTTGAAACCGGG 58.774 47.619 6.32 0.00 0.00 5.73
151 152 3.058914 GTCTGACAGATGTTTGAAACCGG 60.059 47.826 8.73 0.00 0.00 5.28
152 153 3.559655 TGTCTGACAGATGTTTGAAACCG 59.440 43.478 8.73 0.00 0.00 4.44
166 167 1.546029 CTCCGGTTCATCTGTCTGACA 59.454 52.381 10.50 10.50 0.00 3.58
167 168 1.134965 CCTCCGGTTCATCTGTCTGAC 60.135 57.143 0.00 0.00 0.00 3.51
168 169 1.186200 CCTCCGGTTCATCTGTCTGA 58.814 55.000 0.00 0.00 0.00 3.27
169 170 0.176680 CCCTCCGGTTCATCTGTCTG 59.823 60.000 0.00 0.00 0.00 3.51
170 171 0.978146 CCCCTCCGGTTCATCTGTCT 60.978 60.000 0.00 0.00 0.00 3.41
171 172 0.976073 TCCCCTCCGGTTCATCTGTC 60.976 60.000 0.00 0.00 0.00 3.51
172 173 0.546747 TTCCCCTCCGGTTCATCTGT 60.547 55.000 0.00 0.00 0.00 3.41
173 174 0.179000 CTTCCCCTCCGGTTCATCTG 59.821 60.000 0.00 0.00 0.00 2.90
174 175 0.983378 CCTTCCCCTCCGGTTCATCT 60.983 60.000 0.00 0.00 0.00 2.90
175 176 1.272554 ACCTTCCCCTCCGGTTCATC 61.273 60.000 0.00 0.00 0.00 2.92
176 177 0.845102 AACCTTCCCCTCCGGTTCAT 60.845 55.000 0.00 0.00 36.32 2.57
177 178 1.462627 AACCTTCCCCTCCGGTTCA 60.463 57.895 0.00 0.00 36.32 3.18
178 179 1.298993 GAACCTTCCCCTCCGGTTC 59.701 63.158 0.00 4.85 46.72 3.62
179 180 2.229203 GGAACCTTCCCCTCCGGTT 61.229 63.158 0.00 0.00 43.32 4.44
180 181 2.609921 GGAACCTTCCCCTCCGGT 60.610 66.667 0.00 0.00 41.62 5.28
189 190 2.863704 GCACTGCAAACATGGAACCTTC 60.864 50.000 0.00 0.00 0.00 3.46
190 191 1.069049 GCACTGCAAACATGGAACCTT 59.931 47.619 0.00 0.00 0.00 3.50
191 192 0.675633 GCACTGCAAACATGGAACCT 59.324 50.000 0.00 0.00 0.00 3.50
192 193 0.675633 AGCACTGCAAACATGGAACC 59.324 50.000 3.30 0.00 0.00 3.62
193 194 1.603678 CCAGCACTGCAAACATGGAAC 60.604 52.381 3.30 0.00 0.00 3.62
194 195 0.675083 CCAGCACTGCAAACATGGAA 59.325 50.000 3.30 0.00 0.00 3.53
195 196 0.178995 TCCAGCACTGCAAACATGGA 60.179 50.000 3.30 4.35 34.54 3.41
196 197 0.242825 CTCCAGCACTGCAAACATGG 59.757 55.000 3.30 1.81 0.00 3.66
197 198 0.242825 CCTCCAGCACTGCAAACATG 59.757 55.000 3.30 0.00 0.00 3.21
198 199 1.530013 GCCTCCAGCACTGCAAACAT 61.530 55.000 3.30 0.00 42.97 2.71
199 200 2.195567 GCCTCCAGCACTGCAAACA 61.196 57.895 3.30 0.00 42.97 2.83
200 201 2.647297 GCCTCCAGCACTGCAAAC 59.353 61.111 3.30 0.00 42.97 2.93
209 210 1.153208 CCTGTCAGATGCCTCCAGC 60.153 63.158 0.00 0.00 44.14 4.85
210 211 1.489481 TACCTGTCAGATGCCTCCAG 58.511 55.000 0.00 0.00 0.00 3.86
211 212 1.764723 CATACCTGTCAGATGCCTCCA 59.235 52.381 0.00 0.00 0.00 3.86
212 213 1.765314 ACATACCTGTCAGATGCCTCC 59.235 52.381 0.00 0.00 0.00 4.30
213 214 2.484417 CCACATACCTGTCAGATGCCTC 60.484 54.545 0.00 0.00 31.62 4.70
214 215 1.487976 CCACATACCTGTCAGATGCCT 59.512 52.381 0.00 0.00 31.62 4.75
215 216 1.486310 TCCACATACCTGTCAGATGCC 59.514 52.381 0.00 0.00 31.62 4.40
216 217 2.988010 TCCACATACCTGTCAGATGC 57.012 50.000 0.00 0.00 31.62 3.91
217 218 5.069648 ACACTATCCACATACCTGTCAGATG 59.930 44.000 0.00 0.56 31.62 2.90
218 219 5.211973 ACACTATCCACATACCTGTCAGAT 58.788 41.667 0.00 0.00 31.62 2.90
219 220 4.610333 ACACTATCCACATACCTGTCAGA 58.390 43.478 0.00 0.00 31.62 3.27
220 221 6.656632 ATACACTATCCACATACCTGTCAG 57.343 41.667 0.00 0.00 31.62 3.51
221 222 6.238925 CGAATACACTATCCACATACCTGTCA 60.239 42.308 0.00 0.00 31.62 3.58
222 223 6.150318 CGAATACACTATCCACATACCTGTC 58.850 44.000 0.00 0.00 31.62 3.51
223 224 5.010719 CCGAATACACTATCCACATACCTGT 59.989 44.000 0.00 0.00 35.44 4.00
224 225 5.470368 CCGAATACACTATCCACATACCTG 58.530 45.833 0.00 0.00 0.00 4.00
225 226 4.527038 CCCGAATACACTATCCACATACCT 59.473 45.833 0.00 0.00 0.00 3.08
226 227 4.282703 ACCCGAATACACTATCCACATACC 59.717 45.833 0.00 0.00 0.00 2.73
227 228 5.464030 ACCCGAATACACTATCCACATAC 57.536 43.478 0.00 0.00 0.00 2.39
228 229 5.836898 AGAACCCGAATACACTATCCACATA 59.163 40.000 0.00 0.00 0.00 2.29
229 230 4.654262 AGAACCCGAATACACTATCCACAT 59.346 41.667 0.00 0.00 0.00 3.21
230 231 4.028131 AGAACCCGAATACACTATCCACA 58.972 43.478 0.00 0.00 0.00 4.17
231 232 4.667519 AGAACCCGAATACACTATCCAC 57.332 45.455 0.00 0.00 0.00 4.02
232 233 4.960469 AGAAGAACCCGAATACACTATCCA 59.040 41.667 0.00 0.00 0.00 3.41
233 234 5.068723 TGAGAAGAACCCGAATACACTATCC 59.931 44.000 0.00 0.00 0.00 2.59
234 235 6.145338 TGAGAAGAACCCGAATACACTATC 57.855 41.667 0.00 0.00 0.00 2.08
235 236 6.732896 ATGAGAAGAACCCGAATACACTAT 57.267 37.500 0.00 0.00 0.00 2.12
236 237 6.540438 AATGAGAAGAACCCGAATACACTA 57.460 37.500 0.00 0.00 0.00 2.74
237 238 5.422214 AATGAGAAGAACCCGAATACACT 57.578 39.130 0.00 0.00 0.00 3.55
238 239 6.496338 AAAATGAGAAGAACCCGAATACAC 57.504 37.500 0.00 0.00 0.00 2.90
239 240 6.940298 AGAAAAATGAGAAGAACCCGAATACA 59.060 34.615 0.00 0.00 0.00 2.29
240 241 7.119262 TCAGAAAAATGAGAAGAACCCGAATAC 59.881 37.037 0.00 0.00 0.00 1.89
241 242 7.165485 TCAGAAAAATGAGAAGAACCCGAATA 58.835 34.615 0.00 0.00 0.00 1.75
242 243 6.003950 TCAGAAAAATGAGAAGAACCCGAAT 58.996 36.000 0.00 0.00 0.00 3.34
243 244 5.373222 TCAGAAAAATGAGAAGAACCCGAA 58.627 37.500 0.00 0.00 0.00 4.30
244 245 4.968259 TCAGAAAAATGAGAAGAACCCGA 58.032 39.130 0.00 0.00 0.00 5.14
245 246 5.412594 TGATCAGAAAAATGAGAAGAACCCG 59.587 40.000 0.00 0.00 31.44 5.28
246 247 6.824305 TGATCAGAAAAATGAGAAGAACCC 57.176 37.500 0.00 0.00 31.44 4.11
247 248 7.880105 AGTTGATCAGAAAAATGAGAAGAACC 58.120 34.615 0.00 0.00 31.44 3.62
248 249 9.741647 AAAGTTGATCAGAAAAATGAGAAGAAC 57.258 29.630 0.00 0.00 31.44 3.01
249 250 9.956720 GAAAGTTGATCAGAAAAATGAGAAGAA 57.043 29.630 0.00 0.00 31.44 2.52
250 251 9.123902 TGAAAGTTGATCAGAAAAATGAGAAGA 57.876 29.630 0.00 0.00 31.44 2.87
251 252 9.909644 ATGAAAGTTGATCAGAAAAATGAGAAG 57.090 29.630 0.00 0.00 31.44 2.85
252 253 9.687210 CATGAAAGTTGATCAGAAAAATGAGAA 57.313 29.630 0.00 0.00 31.44 2.87
253 254 8.853126 ACATGAAAGTTGATCAGAAAAATGAGA 58.147 29.630 0.00 0.00 31.44 3.27
281 282 8.000780 ACAGTAGCTCAGATGAAAAAGTTTTT 57.999 30.769 13.35 13.35 0.00 1.94
282 283 7.573968 ACAGTAGCTCAGATGAAAAAGTTTT 57.426 32.000 0.00 0.00 0.00 2.43
283 284 7.573968 AACAGTAGCTCAGATGAAAAAGTTT 57.426 32.000 0.00 0.00 0.00 2.66
284 285 7.573968 AAACAGTAGCTCAGATGAAAAAGTT 57.426 32.000 0.00 0.00 0.00 2.66
285 286 8.854614 ATAAACAGTAGCTCAGATGAAAAAGT 57.145 30.769 0.00 0.00 0.00 2.66
289 290 9.507329 AGAAAATAAACAGTAGCTCAGATGAAA 57.493 29.630 0.00 0.00 0.00 2.69
375 376 9.880157 GGGTACACTTAGTATATTCTGTTTTCA 57.120 33.333 0.00 0.00 34.67 2.69
376 377 9.880157 TGGGTACACTTAGTATATTCTGTTTTC 57.120 33.333 0.00 0.00 34.67 2.29
377 378 9.886132 CTGGGTACACTTAGTATATTCTGTTTT 57.114 33.333 0.00 0.00 34.67 2.43
378 379 8.483758 CCTGGGTACACTTAGTATATTCTGTTT 58.516 37.037 0.00 0.00 34.67 2.83
379 380 7.070821 CCCTGGGTACACTTAGTATATTCTGTT 59.929 40.741 3.97 0.00 34.67 3.16
380 381 6.553852 CCCTGGGTACACTTAGTATATTCTGT 59.446 42.308 3.97 0.00 34.67 3.41
381 382 6.014499 CCCCTGGGTACACTTAGTATATTCTG 60.014 46.154 12.71 0.00 34.67 3.02
382 383 6.082707 CCCCTGGGTACACTTAGTATATTCT 58.917 44.000 12.71 0.00 34.67 2.40
383 384 6.356186 CCCCTGGGTACACTTAGTATATTC 57.644 45.833 12.71 0.00 34.67 1.75
403 404 5.163332 CCATACAGTAGAGTTAGGAAACCCC 60.163 48.000 0.00 0.00 36.15 4.95
404 405 5.684291 GCCATACAGTAGAGTTAGGAAACCC 60.684 48.000 0.00 0.00 36.15 4.11
405 406 5.105064 TGCCATACAGTAGAGTTAGGAAACC 60.105 44.000 0.00 0.00 36.15 3.27
406 407 5.974108 TGCCATACAGTAGAGTTAGGAAAC 58.026 41.667 0.00 0.00 35.72 2.78
407 408 6.212791 AGTTGCCATACAGTAGAGTTAGGAAA 59.787 38.462 0.00 0.00 0.00 3.13
408 409 5.720041 AGTTGCCATACAGTAGAGTTAGGAA 59.280 40.000 0.00 0.00 0.00 3.36
409 410 5.127194 CAGTTGCCATACAGTAGAGTTAGGA 59.873 44.000 0.00 0.00 0.00 2.94
410 411 5.127194 TCAGTTGCCATACAGTAGAGTTAGG 59.873 44.000 0.00 0.00 0.00 2.69
411 412 6.208988 TCAGTTGCCATACAGTAGAGTTAG 57.791 41.667 0.00 0.00 0.00 2.34
412 413 5.127194 CCTCAGTTGCCATACAGTAGAGTTA 59.873 44.000 0.00 0.00 0.00 2.24
413 414 4.081420 CCTCAGTTGCCATACAGTAGAGTT 60.081 45.833 0.00 0.00 0.00 3.01
414 415 3.449018 CCTCAGTTGCCATACAGTAGAGT 59.551 47.826 0.00 0.00 0.00 3.24
415 416 3.739519 GCCTCAGTTGCCATACAGTAGAG 60.740 52.174 0.00 0.00 0.00 2.43
416 417 2.168521 GCCTCAGTTGCCATACAGTAGA 59.831 50.000 0.00 0.00 0.00 2.59
417 418 2.555199 GCCTCAGTTGCCATACAGTAG 58.445 52.381 0.00 0.00 0.00 2.57
418 419 2.691409 GCCTCAGTTGCCATACAGTA 57.309 50.000 0.00 0.00 0.00 2.74
419 420 3.558674 GCCTCAGTTGCCATACAGT 57.441 52.632 0.00 0.00 0.00 3.55
427 428 2.743928 CACCGAGGCCTCAGTTGC 60.744 66.667 31.67 5.08 0.00 4.17
428 429 1.669115 CACACCGAGGCCTCAGTTG 60.669 63.158 31.67 24.65 0.00 3.16
429 430 2.743718 CACACCGAGGCCTCAGTT 59.256 61.111 31.67 14.48 0.00 3.16
430 431 4.008933 GCACACCGAGGCCTCAGT 62.009 66.667 31.67 24.44 0.00 3.41
431 432 3.699894 AGCACACCGAGGCCTCAG 61.700 66.667 31.67 23.70 0.00 3.35
432 433 4.007644 CAGCACACCGAGGCCTCA 62.008 66.667 31.67 0.00 0.00 3.86
433 434 3.655810 CTCAGCACACCGAGGCCTC 62.656 68.421 23.79 23.79 0.00 4.70
434 435 3.699894 CTCAGCACACCGAGGCCT 61.700 66.667 3.86 3.86 0.00 5.19
435 436 3.941657 GACTCAGCACACCGAGGCC 62.942 68.421 0.00 0.00 30.45 5.19
436 437 2.433318 GACTCAGCACACCGAGGC 60.433 66.667 0.00 0.00 33.36 4.70
437 438 0.459237 GATGACTCAGCACACCGAGG 60.459 60.000 0.00 0.00 33.36 4.63
438 439 0.244721 TGATGACTCAGCACACCGAG 59.755 55.000 0.00 0.00 35.30 4.63
439 440 0.678950 TTGATGACTCAGCACACCGA 59.321 50.000 0.00 0.00 31.68 4.69
440 441 1.073964 CTTGATGACTCAGCACACCG 58.926 55.000 0.00 0.00 31.68 4.94
441 442 2.072298 GACTTGATGACTCAGCACACC 58.928 52.381 0.00 0.00 31.68 4.16
442 443 2.759191 TGACTTGATGACTCAGCACAC 58.241 47.619 0.00 0.00 31.68 3.82
443 444 3.133691 GTTGACTTGATGACTCAGCACA 58.866 45.455 0.00 0.00 31.68 4.57
444 445 3.133691 TGTTGACTTGATGACTCAGCAC 58.866 45.455 0.00 0.00 31.68 4.40
445 446 3.181462 ACTGTTGACTTGATGACTCAGCA 60.181 43.478 0.00 0.00 31.68 4.41
446 447 3.397482 ACTGTTGACTTGATGACTCAGC 58.603 45.455 0.00 0.00 31.68 4.26
447 448 4.625028 TGACTGTTGACTTGATGACTCAG 58.375 43.478 0.00 0.00 31.68 3.35
448 449 4.670896 TGACTGTTGACTTGATGACTCA 57.329 40.909 0.00 0.00 0.00 3.41
449 450 4.084849 CGTTGACTGTTGACTTGATGACTC 60.085 45.833 0.00 0.00 0.00 3.36
450 451 3.804325 CGTTGACTGTTGACTTGATGACT 59.196 43.478 0.00 0.00 0.00 3.41
451 452 3.555956 ACGTTGACTGTTGACTTGATGAC 59.444 43.478 0.00 0.00 0.00 3.06
452 453 3.792401 ACGTTGACTGTTGACTTGATGA 58.208 40.909 0.00 0.00 0.00 2.92
453 454 4.536364 AACGTTGACTGTTGACTTGATG 57.464 40.909 0.00 0.00 0.00 3.07
467 468 1.658994 GTCAACCCAGTCAACGTTGA 58.341 50.000 26.53 26.53 42.60 3.18
468 469 0.661020 GGTCAACCCAGTCAACGTTG 59.339 55.000 22.35 22.35 38.56 4.10
469 470 0.253610 TGGTCAACCCAGTCAACGTT 59.746 50.000 0.00 0.00 38.72 3.99
470 471 0.463116 GTGGTCAACCCAGTCAACGT 60.463 55.000 0.00 0.00 46.45 3.99
471 472 0.179056 AGTGGTCAACCCAGTCAACG 60.179 55.000 0.00 0.00 43.93 4.10
472 473 2.158871 TGTAGTGGTCAACCCAGTCAAC 60.159 50.000 0.00 0.00 43.93 3.18
473 474 2.104111 CTGTAGTGGTCAACCCAGTCAA 59.896 50.000 0.00 0.00 43.93 3.18
474 475 1.691976 CTGTAGTGGTCAACCCAGTCA 59.308 52.381 0.00 0.00 43.93 3.41
475 476 1.692519 ACTGTAGTGGTCAACCCAGTC 59.307 52.381 3.76 0.00 43.93 3.51
476 477 1.416401 CACTGTAGTGGTCAACCCAGT 59.584 52.381 4.10 3.76 46.45 4.00
477 478 1.878102 GCACTGTAGTGGTCAACCCAG 60.878 57.143 13.41 0.00 46.45 4.45
478 479 0.107831 GCACTGTAGTGGTCAACCCA 59.892 55.000 13.41 0.00 45.72 4.51
479 480 0.107831 TGCACTGTAGTGGTCAACCC 59.892 55.000 13.41 0.00 45.72 4.11
480 481 1.806542 CATGCACTGTAGTGGTCAACC 59.193 52.381 13.41 0.00 45.72 3.77
481 482 2.224079 CACATGCACTGTAGTGGTCAAC 59.776 50.000 13.41 0.00 45.72 3.18
482 483 2.493035 CACATGCACTGTAGTGGTCAA 58.507 47.619 13.41 0.00 45.72 3.18
483 484 1.270785 CCACATGCACTGTAGTGGTCA 60.271 52.381 13.41 4.75 44.95 4.02
484 485 1.442769 CCACATGCACTGTAGTGGTC 58.557 55.000 13.41 0.00 44.95 4.02
485 486 3.631453 CCACATGCACTGTAGTGGT 57.369 52.632 13.41 1.02 44.95 4.16
488 489 1.133809 ACCCCCACATGCACTGTAGT 61.134 55.000 0.00 0.00 35.91 2.73
489 490 0.392998 GACCCCCACATGCACTGTAG 60.393 60.000 0.00 0.00 35.91 2.74
490 491 1.682849 GACCCCCACATGCACTGTA 59.317 57.895 0.00 0.00 35.91 2.74
491 492 2.436109 GACCCCCACATGCACTGT 59.564 61.111 0.00 0.00 39.20 3.55
492 493 2.361610 GGACCCCCACATGCACTG 60.362 66.667 0.00 0.00 0.00 3.66
493 494 2.858476 TGGACCCCCACATGCACT 60.858 61.111 0.00 0.00 37.58 4.40
501 502 0.039472 CAATGACATGTGGACCCCCA 59.961 55.000 1.15 0.00 40.95 4.96
502 503 0.039618 ACAATGACATGTGGACCCCC 59.960 55.000 1.15 0.00 30.82 5.40
503 504 1.004745 AGACAATGACATGTGGACCCC 59.995 52.381 1.15 0.00 32.57 4.95
504 505 2.496899 AGACAATGACATGTGGACCC 57.503 50.000 1.15 0.00 32.57 4.46
505 506 7.807977 AATATTAGACAATGACATGTGGACC 57.192 36.000 1.15 0.00 32.57 4.46
530 531 8.962679 CCACCCTTGCTAAATAGTGTTTAATTA 58.037 33.333 0.00 0.00 0.00 1.40
531 532 7.453439 ACCACCCTTGCTAAATAGTGTTTAATT 59.547 33.333 0.00 0.00 0.00 1.40
532 533 6.951778 ACCACCCTTGCTAAATAGTGTTTAAT 59.048 34.615 0.00 0.00 0.00 1.40
533 534 6.308566 ACCACCCTTGCTAAATAGTGTTTAA 58.691 36.000 0.00 0.00 0.00 1.52
534 535 5.883180 ACCACCCTTGCTAAATAGTGTTTA 58.117 37.500 0.00 0.00 0.00 2.01
535 536 4.736473 ACCACCCTTGCTAAATAGTGTTT 58.264 39.130 0.00 0.00 0.00 2.83
536 537 4.382386 ACCACCCTTGCTAAATAGTGTT 57.618 40.909 0.00 0.00 0.00 3.32
537 538 4.332828 GAACCACCCTTGCTAAATAGTGT 58.667 43.478 0.00 0.00 0.00 3.55
538 539 3.694566 GGAACCACCCTTGCTAAATAGTG 59.305 47.826 0.00 0.00 0.00 2.74
539 540 3.332485 TGGAACCACCCTTGCTAAATAGT 59.668 43.478 0.00 0.00 38.00 2.12
540 541 3.694566 GTGGAACCACCCTTGCTAAATAG 59.305 47.826 12.42 0.00 40.79 1.73
541 542 3.074687 TGTGGAACCACCCTTGCTAAATA 59.925 43.478 19.39 0.00 45.63 1.40
542 543 2.158385 TGTGGAACCACCCTTGCTAAAT 60.158 45.455 19.39 0.00 45.63 1.40
543 544 1.215673 TGTGGAACCACCCTTGCTAAA 59.784 47.619 19.39 0.00 45.63 1.85
544 545 0.847373 TGTGGAACCACCCTTGCTAA 59.153 50.000 19.39 0.00 45.63 3.09
545 546 0.109723 GTGTGGAACCACCCTTGCTA 59.890 55.000 19.39 0.00 45.63 3.49
546 547 1.152756 GTGTGGAACCACCCTTGCT 60.153 57.895 19.39 0.00 45.63 3.91
547 548 2.551912 CGTGTGGAACCACCCTTGC 61.552 63.158 19.39 5.78 45.63 4.01
548 549 1.153046 ACGTGTGGAACCACCCTTG 60.153 57.895 19.39 9.94 45.63 3.61
549 550 1.147600 GACGTGTGGAACCACCCTT 59.852 57.895 19.39 3.49 45.63 3.95
550 551 1.415672 ATGACGTGTGGAACCACCCT 61.416 55.000 19.39 3.64 45.63 4.34
551 552 0.536460 AATGACGTGTGGAACCACCC 60.536 55.000 19.39 8.76 45.63 4.61
552 553 1.001815 CAAATGACGTGTGGAACCACC 60.002 52.381 19.39 10.82 45.63 4.61
553 554 1.599419 GCAAATGACGTGTGGAACCAC 60.599 52.381 16.05 16.05 46.33 4.16
554 555 0.665835 GCAAATGACGTGTGGAACCA 59.334 50.000 0.00 0.00 34.36 3.67
555 556 0.951558 AGCAAATGACGTGTGGAACC 59.048 50.000 0.00 0.00 34.36 3.62
556 557 5.734855 ATATAGCAAATGACGTGTGGAAC 57.265 39.130 0.00 0.00 37.35 3.62
557 558 6.112734 AGAATATAGCAAATGACGTGTGGAA 58.887 36.000 0.00 0.00 0.00 3.53
558 559 5.670485 AGAATATAGCAAATGACGTGTGGA 58.330 37.500 0.00 0.00 0.00 4.02
559 560 5.991328 AGAATATAGCAAATGACGTGTGG 57.009 39.130 0.00 0.00 0.00 4.17
560 561 9.373750 CAATTAGAATATAGCAAATGACGTGTG 57.626 33.333 0.00 0.00 0.00 3.82
561 562 9.109393 ACAATTAGAATATAGCAAATGACGTGT 57.891 29.630 0.00 0.00 0.00 4.49
990 1018 2.000701 CCTAGCCATGGGGGTGTCA 61.001 63.158 15.13 0.00 46.52 3.58
992 1020 2.696125 CCCTAGCCATGGGGGTGT 60.696 66.667 15.13 0.00 46.52 4.16
1311 1888 2.695585 CTTATGGCTAGGGTTCCTCCT 58.304 52.381 0.00 0.00 40.79 3.69
1657 2242 0.746659 GGCTTTTGTGTTGGAGCTGT 59.253 50.000 0.00 0.00 35.53 4.40
2097 2710 7.211573 GTGATTTATGGATGAAATTGGATGCA 58.788 34.615 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.