Multiple sequence alignment - TraesCS2A01G243600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G243600 chr2A 100.000 2881 0 0 1 2881 343417501 343420381 0.000000e+00 5321.0
1 TraesCS2A01G243600 chr2A 87.086 573 58 12 49 614 624480466 624479903 4.050000e-178 634.0
2 TraesCS2A01G243600 chr3B 91.889 2096 130 21 196 2282 781353558 781351494 0.000000e+00 2892.0
3 TraesCS2A01G243600 chr3B 90.888 2118 124 31 196 2282 85345606 85343527 0.000000e+00 2778.0
4 TraesCS2A01G243600 chr3B 88.136 118 9 3 2363 2475 85343529 85343412 5.010000e-28 135.0
5 TraesCS2A01G243600 chr7A 92.145 2037 109 24 279 2282 317897753 317895735 0.000000e+00 2828.0
6 TraesCS2A01G243600 chr7A 92.424 198 13 2 1 197 317897975 317897779 6.080000e-72 281.0
7 TraesCS2A01G243600 chr7A 88.983 118 8 3 2363 2475 317895737 317895620 1.080000e-29 141.0
8 TraesCS2A01G243600 chr7A 89.720 107 6 4 2269 2370 664477307 664477201 6.480000e-27 132.0
9 TraesCS2A01G243600 chr4A 90.793 2118 120 31 196 2282 726567035 726564962 0.000000e+00 2761.0
10 TraesCS2A01G243600 chr4A 93.866 701 35 7 583 1278 24020756 24020059 0.000000e+00 1050.0
11 TraesCS2A01G243600 chr4A 92.666 709 43 8 583 1284 2908464 2909170 0.000000e+00 1013.0
12 TraesCS2A01G243600 chr4A 90.538 613 51 6 1 611 726661963 726662570 0.000000e+00 804.0
13 TraesCS2A01G243600 chr4A 94.656 131 6 1 1 131 726567187 726567058 4.870000e-48 202.0
14 TraesCS2A01G243600 chr4A 88.136 118 9 3 2363 2475 726564964 726564847 5.010000e-28 135.0
15 TraesCS2A01G243600 chr4A 85.938 128 17 1 2754 2881 726664460 726664586 5.010000e-28 135.0
16 TraesCS2A01G243600 chr4A 85.714 126 11 5 2758 2881 2909501 2909621 3.010000e-25 126.0
17 TraesCS2A01G243600 chr4A 84.733 131 13 5 2753 2881 24019724 24019599 1.080000e-24 124.0
18 TraesCS2A01G243600 chr4A 91.071 56 3 1 2681 2734 2909248 2909303 1.110000e-09 75.0
19 TraesCS2A01G243600 chr7B 90.377 2120 121 38 196 2282 582699030 582696961 0.000000e+00 2708.0
20 TraesCS2A01G243600 chr7B 95.349 86 4 0 2281 2366 115386717 115386632 1.390000e-28 137.0
21 TraesCS2A01G243600 chr1B 91.155 2035 111 30 279 2282 512629012 512627016 0.000000e+00 2697.0
22 TraesCS2A01G243600 chr6B 92.368 1900 95 20 414 2282 300672072 300673952 0.000000e+00 2660.0
23 TraesCS2A01G243600 chr6B 90.882 1678 95 22 568 2231 720764062 720765695 0.000000e+00 2198.0
24 TraesCS2A01G243600 chr6B 89.723 613 47 6 1 611 720763459 720764057 0.000000e+00 769.0
25 TraesCS2A01G243600 chr6B 88.136 118 9 3 2363 2475 300673950 300674067 5.010000e-28 135.0
26 TraesCS2A01G243600 chr6B 91.753 97 8 0 2277 2373 416897321 416897417 5.010000e-28 135.0
27 TraesCS2A01G243600 chr6B 85.833 120 16 1 2762 2881 720765954 720766072 3.010000e-25 126.0
28 TraesCS2A01G243600 chr4D 95.122 1476 55 6 616 2086 211757210 211758673 0.000000e+00 2311.0
29 TraesCS2A01G243600 chr4D 93.137 612 39 3 1 611 211756521 211757130 0.000000e+00 894.0
30 TraesCS2A01G243600 chr1A 93.438 701 38 7 583 1278 549337125 549337822 0.000000e+00 1033.0
31 TraesCS2A01G243600 chr1A 91.883 616 43 6 1 614 22856693 22856083 0.000000e+00 854.0
32 TraesCS2A01G243600 chr1A 85.600 125 17 1 2757 2881 22854190 22854067 2.330000e-26 130.0
33 TraesCS2A01G243600 chr1A 84.733 131 13 5 2753 2881 549338157 549338282 1.080000e-24 124.0
34 TraesCS2A01G243600 chr1A 94.643 56 1 1 2681 2734 549337909 549337964 5.110000e-13 86.1
35 TraesCS2A01G243600 chr3A 90.523 612 46 8 1 611 109880235 109880835 0.000000e+00 798.0
36 TraesCS2A01G243600 chr3A 85.938 128 17 1 2754 2881 109882730 109882856 5.010000e-28 135.0
37 TraesCS2A01G243600 chr3A 84.921 126 12 5 2758 2881 572452762 572452882 1.400000e-23 121.0
38 TraesCS2A01G243600 chr3A 92.857 56 2 1 2681 2734 572452509 572452564 2.380000e-11 80.5
39 TraesCS2A01G243600 chr5A 90.686 612 31 13 1 611 577807937 577807351 0.000000e+00 791.0
40 TraesCS2A01G243600 chr5A 84.127 126 13 5 2758 2881 577806313 577806193 6.520000e-22 115.0
41 TraesCS2A01G243600 chr5A 94.643 56 1 1 2681 2734 577806566 577806511 5.110000e-13 86.1
42 TraesCS2A01G243600 chr7D 88.474 616 57 13 1 609 588566469 588567077 0.000000e+00 732.0
43 TraesCS2A01G243600 chr5D 91.104 326 16 6 2363 2682 553776778 553776460 2.050000e-116 429.0
44 TraesCS2A01G243600 chr5D 95.556 90 4 0 2281 2370 431293739 431293828 8.320000e-31 145.0
45 TraesCS2A01G243600 chr5D 93.750 96 4 2 2278 2372 373214569 373214663 2.990000e-30 143.0
46 TraesCS2A01G243600 chr1D 93.000 100 5 2 2268 2367 321678022 321677925 8.320000e-31 145.0
47 TraesCS2A01G243600 chr1D 95.556 90 3 1 2280 2368 473970180 473970269 2.990000e-30 143.0
48 TraesCS2A01G243600 chr5B 92.784 97 7 0 2276 2372 142701502 142701406 1.080000e-29 141.0
49 TraesCS2A01G243600 chr2D 93.617 94 5 1 2276 2368 544849961 544850054 3.870000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G243600 chr2A 343417501 343420381 2880 False 5321.000000 5321 100.000000 1 2881 1 chr2A.!!$F1 2880
1 TraesCS2A01G243600 chr2A 624479903 624480466 563 True 634.000000 634 87.086000 49 614 1 chr2A.!!$R1 565
2 TraesCS2A01G243600 chr3B 781351494 781353558 2064 True 2892.000000 2892 91.889000 196 2282 1 chr3B.!!$R1 2086
3 TraesCS2A01G243600 chr3B 85343412 85345606 2194 True 1456.500000 2778 89.512000 196 2475 2 chr3B.!!$R2 2279
4 TraesCS2A01G243600 chr7A 317895620 317897975 2355 True 1083.333333 2828 91.184000 1 2475 3 chr7A.!!$R2 2474
5 TraesCS2A01G243600 chr4A 726564847 726567187 2340 True 1032.666667 2761 91.195000 1 2475 3 chr4A.!!$R2 2474
6 TraesCS2A01G243600 chr4A 24019599 24020756 1157 True 587.000000 1050 89.299500 583 2881 2 chr4A.!!$R1 2298
7 TraesCS2A01G243600 chr4A 726661963 726664586 2623 False 469.500000 804 88.238000 1 2881 2 chr4A.!!$F2 2880
8 TraesCS2A01G243600 chr4A 2908464 2909621 1157 False 404.666667 1013 89.817000 583 2881 3 chr4A.!!$F1 2298
9 TraesCS2A01G243600 chr7B 582696961 582699030 2069 True 2708.000000 2708 90.377000 196 2282 1 chr7B.!!$R2 2086
10 TraesCS2A01G243600 chr1B 512627016 512629012 1996 True 2697.000000 2697 91.155000 279 2282 1 chr1B.!!$R1 2003
11 TraesCS2A01G243600 chr6B 300672072 300674067 1995 False 1397.500000 2660 90.252000 414 2475 2 chr6B.!!$F2 2061
12 TraesCS2A01G243600 chr6B 720763459 720766072 2613 False 1031.000000 2198 88.812667 1 2881 3 chr6B.!!$F3 2880
13 TraesCS2A01G243600 chr4D 211756521 211758673 2152 False 1602.500000 2311 94.129500 1 2086 2 chr4D.!!$F1 2085
14 TraesCS2A01G243600 chr1A 22854067 22856693 2626 True 492.000000 854 88.741500 1 2881 2 chr1A.!!$R1 2880
15 TraesCS2A01G243600 chr1A 549337125 549338282 1157 False 414.366667 1033 90.938000 583 2881 3 chr1A.!!$F1 2298
16 TraesCS2A01G243600 chr3A 109880235 109882856 2621 False 466.500000 798 88.230500 1 2881 2 chr3A.!!$F1 2880
17 TraesCS2A01G243600 chr5A 577806193 577807937 1744 True 330.700000 791 89.818667 1 2881 3 chr5A.!!$R1 2880
18 TraesCS2A01G243600 chr7D 588566469 588567077 608 False 732.000000 732 88.474000 1 609 1 chr7D.!!$F1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 578 2.677836 TGGATTTGCACTGTATTCGCTC 59.322 45.455 0.0 0.0 0.0 5.03 F
1019 1165 0.041238 ATGGGGAGACTCGTGAAGGA 59.959 55.000 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1469 1674 0.323302 TACCACATTGCGAGCTCCAA 59.677 50.0 16.66 16.66 0.00 3.53 R
2577 2835 0.321021 GCCCAAAATGCACATGGTCA 59.679 50.0 11.94 0.00 32.13 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.668576 TTCAGTCAATTCGAACAGATGC 57.331 40.909 0.00 0.00 0.00 3.91
134 144 8.117813 TCCTATTTTTGGATTTACAGTGGTTC 57.882 34.615 0.00 0.00 0.00 3.62
144 154 3.924238 CAGTGGTTCACAGTGCAAC 57.076 52.632 0.00 1.78 43.10 4.17
185 195 9.376075 AGAGTGATTTTCAGTGTATTCATACTG 57.624 33.333 0.00 0.00 43.30 2.74
188 198 9.113838 GTGATTTTCAGTGTATTCATACTGGAT 57.886 33.333 0.00 0.00 42.47 3.41
193 203 9.513906 TTTCAGTGTATTCATACTGGATTTTCA 57.486 29.630 0.00 0.00 42.47 2.69
194 204 9.685276 TTCAGTGTATTCATACTGGATTTTCAT 57.315 29.630 0.00 0.00 42.47 2.57
195 205 9.685276 TCAGTGTATTCATACTGGATTTTCATT 57.315 29.630 0.00 0.00 42.47 2.57
196 206 9.726232 CAGTGTATTCATACTGGATTTTCATTG 57.274 33.333 0.00 0.00 39.52 2.82
197 207 9.685276 AGTGTATTCATACTGGATTTTCATTGA 57.315 29.630 0.00 0.00 34.41 2.57
204 246 9.859427 TCATACTGGATTTTCATTGATTTTCAC 57.141 29.630 0.00 0.00 0.00 3.18
238 292 8.573035 TGTAGTTGATTTCCAGTGTAATTTTCC 58.427 33.333 0.00 0.00 0.00 3.13
333 387 8.076178 AGTGTAATTTCAGTGTATTTTGTCAGC 58.924 33.333 0.00 0.00 0.00 4.26
355 409 4.207019 GCGGATTTGCATTGTATTTGCTAC 59.793 41.667 0.00 0.00 40.77 3.58
362 416 5.893687 TGCATTGTATTTGCTACTGGAATG 58.106 37.500 0.00 0.00 40.77 2.67
399 461 7.064134 TGTCCTAATAGCAGTGTATTTTTGTCG 59.936 37.037 0.00 0.00 0.00 4.35
425 488 5.005094 GGGGTTGCACTGTATTTGTTAGTA 58.995 41.667 0.00 0.00 0.00 1.82
513 578 2.677836 TGGATTTGCACTGTATTCGCTC 59.322 45.455 0.00 0.00 0.00 5.03
632 774 4.083590 GCAGAGGAATTGTGACTGTTCTTC 60.084 45.833 0.00 5.13 0.00 2.87
652 794 2.931969 TCTGATGCATCGCTAGTTTGTG 59.068 45.455 21.34 2.40 0.00 3.33
948 1093 2.686915 CCCTTCTGCCATTTCATCTCAC 59.313 50.000 0.00 0.00 0.00 3.51
969 1115 6.754193 TCACACTTTTTGTCCTTTTCTTTGT 58.246 32.000 0.00 0.00 35.67 2.83
1012 1158 3.639094 AGATTGAAGTATGGGGAGACTCG 59.361 47.826 0.00 0.00 0.00 4.18
1019 1165 0.041238 ATGGGGAGACTCGTGAAGGA 59.959 55.000 0.00 0.00 0.00 3.36
1076 1222 3.301794 TTGTGATGATTCAGATGGGGG 57.698 47.619 0.00 0.00 30.85 5.40
1089 1235 0.780090 ATGGGGGTCCTTTTGTCCCT 60.780 55.000 0.00 0.00 40.88 4.20
1246 1430 3.582647 TCATCTGTTAACTGCAGGAAGGA 59.417 43.478 19.93 12.31 34.89 3.36
1315 1499 3.181455 TGTCTCATGTAAGTGTGGTGCTT 60.181 43.478 0.00 0.00 0.00 3.91
1321 1505 5.238432 TCATGTAAGTGTGGTGCTTTAGTTG 59.762 40.000 0.00 0.00 0.00 3.16
1345 1529 6.995686 TGATGCTTTTGTACCAGTTTCTTCTA 59.004 34.615 0.00 0.00 0.00 2.10
1463 1668 8.237267 AGTGAATTGCTTAAAACGGAAGATTAG 58.763 33.333 0.00 0.00 0.00 1.73
1469 1674 8.106247 TGCTTAAAACGGAAGATTAGAAATGT 57.894 30.769 0.00 0.00 0.00 2.71
1619 1832 7.111247 TCTTTTGTGGAATGGCTATTAATGG 57.889 36.000 0.00 0.00 0.00 3.16
1852 2075 5.230942 CAAGTCCGTGTTCTTCAGAGTTAT 58.769 41.667 0.00 0.00 0.00 1.89
1891 2114 6.194967 TCTCAAATATGTGAGGACAGAGGTA 58.805 40.000 20.62 0.00 44.40 3.08
2129 2355 9.017509 TCTTCTGCAATAAACTCAAATCTGAAT 57.982 29.630 0.00 0.00 0.00 2.57
2142 2368 8.692710 ACTCAAATCTGAATAATTGCATGATGT 58.307 29.630 0.00 0.00 0.00 3.06
2147 2373 7.734924 TCTGAATAATTGCATGATGTAGACC 57.265 36.000 0.00 0.00 0.00 3.85
2213 2439 4.281941 GTCCAAATTCAAGCCTTTCTCCTT 59.718 41.667 0.00 0.00 0.00 3.36
2292 2544 4.388378 GTACATTGGTACTCCCTCTGTC 57.612 50.000 0.00 0.00 45.19 3.51
2293 2545 2.188817 ACATTGGTACTCCCTCTGTCC 58.811 52.381 0.00 0.00 0.00 4.02
2294 2546 1.486726 CATTGGTACTCCCTCTGTCCC 59.513 57.143 0.00 0.00 0.00 4.46
2295 2547 0.490017 TTGGTACTCCCTCTGTCCCA 59.510 55.000 0.00 0.00 0.00 4.37
2296 2548 0.716591 TGGTACTCCCTCTGTCCCAT 59.283 55.000 0.00 0.00 0.00 4.00
2297 2549 1.934480 TGGTACTCCCTCTGTCCCATA 59.066 52.381 0.00 0.00 0.00 2.74
2298 2550 2.316677 TGGTACTCCCTCTGTCCCATAA 59.683 50.000 0.00 0.00 0.00 1.90
2299 2551 3.051341 TGGTACTCCCTCTGTCCCATAAT 60.051 47.826 0.00 0.00 0.00 1.28
2300 2552 4.171243 TGGTACTCCCTCTGTCCCATAATA 59.829 45.833 0.00 0.00 0.00 0.98
2301 2553 5.162760 TGGTACTCCCTCTGTCCCATAATAT 60.163 44.000 0.00 0.00 0.00 1.28
2302 2554 6.047479 TGGTACTCCCTCTGTCCCATAATATA 59.953 42.308 0.00 0.00 0.00 0.86
2303 2555 6.958192 GGTACTCCCTCTGTCCCATAATATAA 59.042 42.308 0.00 0.00 0.00 0.98
2304 2556 7.124448 GGTACTCCCTCTGTCCCATAATATAAG 59.876 44.444 0.00 0.00 0.00 1.73
2305 2557 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
2306 2558 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
2307 2559 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
2308 2560 6.210784 TCCCTCTGTCCCATAATATAAGAACG 59.789 42.308 0.00 0.00 0.00 3.95
2309 2561 6.014499 CCCTCTGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
2310 2562 7.442656 CCTCTGTCCCATAATATAAGAACGTT 58.557 38.462 0.00 0.00 0.00 3.99
2311 2563 7.931948 CCTCTGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
2312 2564 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
2313 2565 9.675464 TCTGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
2356 2608 8.446599 AAAAACACTCTTATATTATGGGACGG 57.553 34.615 0.00 0.00 0.00 4.79
2357 2609 6.989155 AACACTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
2358 2610 6.591750 ACACTCTTATATTATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
2359 2611 5.480772 ACACTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
2360 2612 5.024118 ACTCTTATATTATGGGACGGAGGG 58.976 45.833 0.00 0.00 0.00 4.30
2361 2613 5.222484 ACTCTTATATTATGGGACGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
2362 2614 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2363 2615 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2364 2616 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2384 2636 4.832266 AGTATATGAGAGTCTCCTTGGCAG 59.168 45.833 17.57 0.00 0.00 4.85
2399 2656 7.023171 TCCTTGGCAGTAAAGTTTAAGGATA 57.977 36.000 10.08 0.00 37.78 2.59
2418 2675 5.899299 GGATACTACGAAGGTTGCTTCTAA 58.101 41.667 0.00 0.00 0.00 2.10
2424 2681 5.916661 ACGAAGGTTGCTTCTAAGAGATA 57.083 39.130 0.00 0.00 0.00 1.98
2426 2683 6.334202 ACGAAGGTTGCTTCTAAGAGATAAG 58.666 40.000 0.00 0.00 0.00 1.73
2429 2686 5.983540 AGGTTGCTTCTAAGAGATAAGTGG 58.016 41.667 0.00 0.00 0.00 4.00
2469 2727 1.151668 GCATTCGCTGTGAGTCTTGT 58.848 50.000 0.00 0.00 34.30 3.16
2543 2801 9.729023 TTTTTGTGTGTAATGATGTTGAACTAG 57.271 29.630 0.00 0.00 0.00 2.57
2544 2802 6.480524 TGTGTGTAATGATGTTGAACTAGC 57.519 37.500 0.00 0.00 0.00 3.42
2545 2803 5.411361 TGTGTGTAATGATGTTGAACTAGCC 59.589 40.000 0.00 0.00 0.00 3.93
2546 2804 5.643777 GTGTGTAATGATGTTGAACTAGCCT 59.356 40.000 0.00 0.00 0.00 4.58
2547 2805 5.874810 TGTGTAATGATGTTGAACTAGCCTC 59.125 40.000 0.00 0.00 0.00 4.70
2548 2806 5.294552 GTGTAATGATGTTGAACTAGCCTCC 59.705 44.000 0.00 0.00 0.00 4.30
2549 2807 3.567478 ATGATGTTGAACTAGCCTCCC 57.433 47.619 0.00 0.00 0.00 4.30
2550 2808 1.559682 TGATGTTGAACTAGCCTCCCC 59.440 52.381 0.00 0.00 0.00 4.81
2551 2809 1.840635 GATGTTGAACTAGCCTCCCCT 59.159 52.381 0.00 0.00 0.00 4.79
2552 2810 1.742308 TGTTGAACTAGCCTCCCCTT 58.258 50.000 0.00 0.00 0.00 3.95
2553 2811 1.628846 TGTTGAACTAGCCTCCCCTTC 59.371 52.381 0.00 0.00 0.00 3.46
2554 2812 1.909986 GTTGAACTAGCCTCCCCTTCT 59.090 52.381 0.00 0.00 0.00 2.85
2555 2813 2.306219 GTTGAACTAGCCTCCCCTTCTT 59.694 50.000 0.00 0.00 0.00 2.52
2556 2814 2.632537 TGAACTAGCCTCCCCTTCTTT 58.367 47.619 0.00 0.00 0.00 2.52
2557 2815 2.986728 TGAACTAGCCTCCCCTTCTTTT 59.013 45.455 0.00 0.00 0.00 2.27
2558 2816 3.397955 TGAACTAGCCTCCCCTTCTTTTT 59.602 43.478 0.00 0.00 0.00 1.94
2559 2817 3.722908 ACTAGCCTCCCCTTCTTTTTC 57.277 47.619 0.00 0.00 0.00 2.29
2560 2818 3.261083 ACTAGCCTCCCCTTCTTTTTCT 58.739 45.455 0.00 0.00 0.00 2.52
2561 2819 2.593925 AGCCTCCCCTTCTTTTTCTG 57.406 50.000 0.00 0.00 0.00 3.02
2562 2820 0.891373 GCCTCCCCTTCTTTTTCTGC 59.109 55.000 0.00 0.00 0.00 4.26
2563 2821 1.548809 GCCTCCCCTTCTTTTTCTGCT 60.549 52.381 0.00 0.00 0.00 4.24
2564 2822 2.290960 GCCTCCCCTTCTTTTTCTGCTA 60.291 50.000 0.00 0.00 0.00 3.49
2565 2823 3.615155 CCTCCCCTTCTTTTTCTGCTAG 58.385 50.000 0.00 0.00 0.00 3.42
2566 2824 3.615155 CTCCCCTTCTTTTTCTGCTAGG 58.385 50.000 0.00 0.00 0.00 3.02
2567 2825 2.986728 TCCCCTTCTTTTTCTGCTAGGT 59.013 45.455 0.00 0.00 0.00 3.08
2568 2826 3.009143 TCCCCTTCTTTTTCTGCTAGGTC 59.991 47.826 0.00 0.00 0.00 3.85
2569 2827 3.009584 CCCCTTCTTTTTCTGCTAGGTCT 59.990 47.826 0.00 0.00 0.00 3.85
2570 2828 4.257731 CCCTTCTTTTTCTGCTAGGTCTC 58.742 47.826 0.00 0.00 0.00 3.36
2571 2829 4.263068 CCCTTCTTTTTCTGCTAGGTCTCA 60.263 45.833 0.00 0.00 0.00 3.27
2572 2830 5.495640 CCTTCTTTTTCTGCTAGGTCTCAT 58.504 41.667 0.00 0.00 0.00 2.90
2573 2831 6.352222 CCCTTCTTTTTCTGCTAGGTCTCATA 60.352 42.308 0.00 0.00 0.00 2.15
2574 2832 7.278875 CCTTCTTTTTCTGCTAGGTCTCATAT 58.721 38.462 0.00 0.00 0.00 1.78
2575 2833 7.440856 CCTTCTTTTTCTGCTAGGTCTCATATC 59.559 40.741 0.00 0.00 0.00 1.63
2576 2834 6.821388 TCTTTTTCTGCTAGGTCTCATATCC 58.179 40.000 0.00 0.00 0.00 2.59
2577 2835 6.613271 TCTTTTTCTGCTAGGTCTCATATCCT 59.387 38.462 0.00 0.00 37.80 3.24
2578 2836 5.798125 TTTCTGCTAGGTCTCATATCCTG 57.202 43.478 0.00 0.00 35.51 3.86
2579 2837 4.731313 TCTGCTAGGTCTCATATCCTGA 57.269 45.455 0.00 0.00 35.51 3.86
2580 2838 4.402829 TCTGCTAGGTCTCATATCCTGAC 58.597 47.826 0.00 0.00 35.51 3.51
2586 2844 4.000331 GGTCTCATATCCTGACCATGTG 58.000 50.000 11.38 0.00 46.79 3.21
2587 2845 3.397482 GTCTCATATCCTGACCATGTGC 58.603 50.000 0.00 0.00 0.00 4.57
2588 2846 3.040477 TCTCATATCCTGACCATGTGCA 58.960 45.455 0.00 0.00 0.00 4.57
2589 2847 3.649502 TCTCATATCCTGACCATGTGCAT 59.350 43.478 0.00 0.00 0.00 3.96
2590 2848 4.103627 TCTCATATCCTGACCATGTGCATT 59.896 41.667 0.00 0.00 0.00 3.56
2591 2849 4.795469 TCATATCCTGACCATGTGCATTT 58.205 39.130 0.00 0.00 0.00 2.32
2592 2850 5.202765 TCATATCCTGACCATGTGCATTTT 58.797 37.500 0.00 0.00 0.00 1.82
2593 2851 3.880047 ATCCTGACCATGTGCATTTTG 57.120 42.857 0.00 0.00 0.00 2.44
2594 2852 1.894466 TCCTGACCATGTGCATTTTGG 59.106 47.619 10.09 10.09 36.56 3.28
2595 2853 1.066716 CCTGACCATGTGCATTTTGGG 60.067 52.381 14.65 4.81 34.72 4.12
2596 2854 0.321021 TGACCATGTGCATTTTGGGC 59.679 50.000 14.65 12.72 39.14 5.36
2597 2855 0.609662 GACCATGTGCATTTTGGGCT 59.390 50.000 14.65 0.00 35.54 5.19
2598 2856 0.322322 ACCATGTGCATTTTGGGCTG 59.678 50.000 14.65 0.00 34.72 4.85
2599 2857 0.609151 CCATGTGCATTTTGGGCTGA 59.391 50.000 0.00 0.00 0.00 4.26
2600 2858 1.002201 CCATGTGCATTTTGGGCTGAA 59.998 47.619 0.00 0.00 0.00 3.02
2601 2859 2.355310 CCATGTGCATTTTGGGCTGAAT 60.355 45.455 0.00 0.00 0.00 2.57
2602 2860 3.340034 CATGTGCATTTTGGGCTGAATT 58.660 40.909 0.00 0.00 0.00 2.17
2603 2861 3.042871 TGTGCATTTTGGGCTGAATTC 57.957 42.857 0.00 0.00 0.00 2.17
2604 2862 2.633967 TGTGCATTTTGGGCTGAATTCT 59.366 40.909 7.05 0.00 0.00 2.40
2605 2863 3.256558 GTGCATTTTGGGCTGAATTCTC 58.743 45.455 7.05 0.00 0.00 2.87
2606 2864 3.056322 GTGCATTTTGGGCTGAATTCTCT 60.056 43.478 7.05 0.00 0.00 3.10
2607 2865 4.158394 GTGCATTTTGGGCTGAATTCTCTA 59.842 41.667 7.05 0.00 0.00 2.43
2608 2866 4.158394 TGCATTTTGGGCTGAATTCTCTAC 59.842 41.667 7.05 0.00 0.00 2.59
2609 2867 4.158394 GCATTTTGGGCTGAATTCTCTACA 59.842 41.667 7.05 0.00 0.00 2.74
2610 2868 5.163478 GCATTTTGGGCTGAATTCTCTACAT 60.163 40.000 7.05 0.00 0.00 2.29
2611 2869 5.902613 TTTTGGGCTGAATTCTCTACATG 57.097 39.130 7.05 0.00 0.00 3.21
2612 2870 4.842531 TTGGGCTGAATTCTCTACATGA 57.157 40.909 7.05 0.00 0.00 3.07
2613 2871 5.378230 TTGGGCTGAATTCTCTACATGAT 57.622 39.130 7.05 0.00 0.00 2.45
2614 2872 6.499106 TTGGGCTGAATTCTCTACATGATA 57.501 37.500 7.05 0.00 0.00 2.15
2615 2873 5.858381 TGGGCTGAATTCTCTACATGATAC 58.142 41.667 7.05 0.00 0.00 2.24
2616 2874 5.221722 TGGGCTGAATTCTCTACATGATACC 60.222 44.000 7.05 0.00 0.00 2.73
2617 2875 5.221722 GGGCTGAATTCTCTACATGATACCA 60.222 44.000 7.05 0.00 0.00 3.25
2618 2876 6.291377 GGCTGAATTCTCTACATGATACCAA 58.709 40.000 7.05 0.00 0.00 3.67
2619 2877 6.426328 GGCTGAATTCTCTACATGATACCAAG 59.574 42.308 7.05 0.00 0.00 3.61
2620 2878 6.073331 GCTGAATTCTCTACATGATACCAAGC 60.073 42.308 7.05 0.00 0.00 4.01
2621 2879 6.291377 TGAATTCTCTACATGATACCAAGCC 58.709 40.000 7.05 0.00 0.00 4.35
2622 2880 6.100279 TGAATTCTCTACATGATACCAAGCCT 59.900 38.462 7.05 0.00 0.00 4.58
2623 2881 7.290014 TGAATTCTCTACATGATACCAAGCCTA 59.710 37.037 7.05 0.00 0.00 3.93
2624 2882 6.656632 TTCTCTACATGATACCAAGCCTAG 57.343 41.667 0.00 0.00 0.00 3.02
2625 2883 5.080337 TCTCTACATGATACCAAGCCTAGG 58.920 45.833 3.67 3.67 0.00 3.02
2626 2884 4.160329 TCTACATGATACCAAGCCTAGGG 58.840 47.826 11.72 0.00 0.00 3.53
2627 2885 2.776665 ACATGATACCAAGCCTAGGGT 58.223 47.619 7.93 7.93 41.21 4.34
2628 2886 3.936461 ACATGATACCAAGCCTAGGGTA 58.064 45.455 15.26 5.97 43.38 3.69
2629 2887 3.646637 ACATGATACCAAGCCTAGGGTAC 59.353 47.826 15.26 0.00 42.12 3.34
2630 2888 3.700863 TGATACCAAGCCTAGGGTACT 57.299 47.619 15.26 0.00 42.12 2.73
2631 2889 4.003584 TGATACCAAGCCTAGGGTACTT 57.996 45.455 15.26 3.95 42.12 2.24
2632 2890 3.709653 TGATACCAAGCCTAGGGTACTTG 59.290 47.826 15.26 16.12 42.12 3.16
2633 2891 2.040342 ACCAAGCCTAGGGTACTTGT 57.960 50.000 15.26 6.35 39.30 3.16
2634 2892 1.907255 ACCAAGCCTAGGGTACTTGTC 59.093 52.381 15.26 0.00 39.30 3.18
2635 2893 2.188817 CCAAGCCTAGGGTACTTGTCT 58.811 52.381 15.26 0.00 39.30 3.41
2636 2894 2.093447 CCAAGCCTAGGGTACTTGTCTG 60.093 54.545 15.26 6.75 39.30 3.51
2637 2895 1.867363 AGCCTAGGGTACTTGTCTGG 58.133 55.000 12.99 0.00 0.00 3.86
2638 2896 1.361543 AGCCTAGGGTACTTGTCTGGA 59.638 52.381 12.99 0.00 0.00 3.86
2639 2897 1.757699 GCCTAGGGTACTTGTCTGGAG 59.242 57.143 11.72 0.00 0.00 3.86
2640 2898 2.623502 GCCTAGGGTACTTGTCTGGAGA 60.624 54.545 11.72 0.00 0.00 3.71
2641 2899 3.292460 CCTAGGGTACTTGTCTGGAGAG 58.708 54.545 0.00 0.00 0.00 3.20
2642 2900 2.239681 AGGGTACTTGTCTGGAGAGG 57.760 55.000 0.00 0.00 0.00 3.69
2643 2901 1.433592 AGGGTACTTGTCTGGAGAGGT 59.566 52.381 0.00 0.00 0.00 3.85
2644 2902 2.653366 AGGGTACTTGTCTGGAGAGGTA 59.347 50.000 0.00 0.00 0.00 3.08
2645 2903 3.077088 AGGGTACTTGTCTGGAGAGGTAA 59.923 47.826 0.00 0.00 0.00 2.85
2646 2904 4.031611 GGGTACTTGTCTGGAGAGGTAAT 58.968 47.826 0.00 0.00 0.00 1.89
2647 2905 5.043582 AGGGTACTTGTCTGGAGAGGTAATA 60.044 44.000 0.00 0.00 0.00 0.98
2648 2906 5.068855 GGGTACTTGTCTGGAGAGGTAATAC 59.931 48.000 0.00 0.00 0.00 1.89
2649 2907 5.655532 GGTACTTGTCTGGAGAGGTAATACA 59.344 44.000 0.00 0.00 0.00 2.29
2650 2908 5.923733 ACTTGTCTGGAGAGGTAATACAG 57.076 43.478 0.00 0.00 0.00 2.74
2651 2909 5.334421 ACTTGTCTGGAGAGGTAATACAGT 58.666 41.667 0.00 0.00 0.00 3.55
2652 2910 5.780793 ACTTGTCTGGAGAGGTAATACAGTT 59.219 40.000 0.00 0.00 0.00 3.16
2653 2911 6.952358 ACTTGTCTGGAGAGGTAATACAGTTA 59.048 38.462 0.00 0.00 0.00 2.24
2654 2912 7.453752 ACTTGTCTGGAGAGGTAATACAGTTAA 59.546 37.037 0.00 0.00 0.00 2.01
2655 2913 7.406031 TGTCTGGAGAGGTAATACAGTTAAG 57.594 40.000 0.00 0.00 0.00 1.85
2656 2914 6.127423 TGTCTGGAGAGGTAATACAGTTAAGC 60.127 42.308 0.00 0.00 0.00 3.09
2657 2915 5.955959 TCTGGAGAGGTAATACAGTTAAGCA 59.044 40.000 0.00 0.00 0.00 3.91
2658 2916 6.611642 TCTGGAGAGGTAATACAGTTAAGCAT 59.388 38.462 0.00 0.00 0.00 3.79
2659 2917 7.125811 TCTGGAGAGGTAATACAGTTAAGCATT 59.874 37.037 0.00 0.00 0.00 3.56
2660 2918 7.630082 TGGAGAGGTAATACAGTTAAGCATTT 58.370 34.615 0.00 0.00 0.00 2.32
2661 2919 7.769044 TGGAGAGGTAATACAGTTAAGCATTTC 59.231 37.037 0.00 0.00 0.00 2.17
2662 2920 7.988028 GGAGAGGTAATACAGTTAAGCATTTCT 59.012 37.037 0.00 0.00 0.00 2.52
2663 2921 8.950208 AGAGGTAATACAGTTAAGCATTTCTC 57.050 34.615 0.00 0.00 0.00 2.87
2664 2922 7.707035 AGAGGTAATACAGTTAAGCATTTCTCG 59.293 37.037 0.00 0.00 0.00 4.04
2665 2923 6.761714 AGGTAATACAGTTAAGCATTTCTCGG 59.238 38.462 0.00 0.00 0.00 4.63
2666 2924 6.759827 GGTAATACAGTTAAGCATTTCTCGGA 59.240 38.462 0.00 0.00 0.00 4.55
2667 2925 7.279313 GGTAATACAGTTAAGCATTTCTCGGAA 59.721 37.037 0.00 0.00 0.00 4.30
2668 2926 6.663944 ATACAGTTAAGCATTTCTCGGAAC 57.336 37.500 0.00 0.00 0.00 3.62
2669 2927 4.642429 ACAGTTAAGCATTTCTCGGAACT 58.358 39.130 0.00 0.00 0.00 3.01
2670 2928 5.790593 ACAGTTAAGCATTTCTCGGAACTA 58.209 37.500 0.00 0.00 0.00 2.24
2671 2929 5.869888 ACAGTTAAGCATTTCTCGGAACTAG 59.130 40.000 0.00 0.00 0.00 2.57
2672 2930 6.100004 CAGTTAAGCATTTCTCGGAACTAGA 58.900 40.000 0.00 0.00 0.00 2.43
2673 2931 6.758886 CAGTTAAGCATTTCTCGGAACTAGAT 59.241 38.462 0.00 0.00 27.78 1.98
2674 2932 7.921214 CAGTTAAGCATTTCTCGGAACTAGATA 59.079 37.037 0.00 0.00 27.78 1.98
2675 2933 8.475639 AGTTAAGCATTTCTCGGAACTAGATAA 58.524 33.333 0.00 0.00 27.78 1.75
2676 2934 8.756864 GTTAAGCATTTCTCGGAACTAGATAAG 58.243 37.037 0.00 0.00 27.78 1.73
2677 2935 6.716934 AGCATTTCTCGGAACTAGATAAGA 57.283 37.500 0.00 0.00 27.78 2.10
2678 2936 7.113658 AGCATTTCTCGGAACTAGATAAGAA 57.886 36.000 0.00 0.00 27.78 2.52
2679 2937 6.981559 AGCATTTCTCGGAACTAGATAAGAAC 59.018 38.462 0.00 0.00 27.78 3.01
2698 2956 7.839680 AAGAACAAGTGGATTTATTTCTGGT 57.160 32.000 0.00 0.00 0.00 4.00
2699 2957 7.454260 AGAACAAGTGGATTTATTTCTGGTC 57.546 36.000 0.00 0.00 0.00 4.02
2700 2958 7.004086 AGAACAAGTGGATTTATTTCTGGTCA 58.996 34.615 0.00 0.00 0.00 4.02
2701 2959 7.671398 AGAACAAGTGGATTTATTTCTGGTCAT 59.329 33.333 0.00 0.00 0.00 3.06
2702 2960 7.161773 ACAAGTGGATTTATTTCTGGTCATG 57.838 36.000 0.00 0.00 0.00 3.07
2704 2962 7.094205 ACAAGTGGATTTATTTCTGGTCATGTC 60.094 37.037 0.00 0.00 0.00 3.06
2707 2965 6.038714 GTGGATTTATTTCTGGTCATGTCCTC 59.961 42.308 10.43 0.00 0.00 3.71
2709 2967 6.830838 GGATTTATTTCTGGTCATGTCCTCTT 59.169 38.462 10.43 0.00 0.00 2.85
2710 2968 7.012799 GGATTTATTTCTGGTCATGTCCTCTTC 59.987 40.741 10.43 0.00 0.00 2.87
2711 2969 3.703001 TTTCTGGTCATGTCCTCTTCC 57.297 47.619 10.43 0.00 0.00 3.46
2712 2970 2.325661 TCTGGTCATGTCCTCTTCCA 57.674 50.000 10.43 0.86 0.00 3.53
2713 2971 2.182827 TCTGGTCATGTCCTCTTCCAG 58.817 52.381 10.43 9.21 42.36 3.86
2714 2972 1.905215 CTGGTCATGTCCTCTTCCAGT 59.095 52.381 10.43 0.00 38.01 4.00
2715 2973 2.304180 CTGGTCATGTCCTCTTCCAGTT 59.696 50.000 10.43 0.00 38.01 3.16
2716 2974 2.711009 TGGTCATGTCCTCTTCCAGTTT 59.289 45.455 10.43 0.00 0.00 2.66
2718 2976 4.145052 GGTCATGTCCTCTTCCAGTTTTT 58.855 43.478 1.28 0.00 0.00 1.94
2750 3008 9.147732 AGTCCCTGATAAAATGGATTTATTTCC 57.852 33.333 0.00 0.00 42.84 3.13
2751 3009 8.082242 GTCCCTGATAAAATGGATTTATTTCCG 58.918 37.037 0.00 0.00 42.84 4.30
2752 3010 6.868339 CCCTGATAAAATGGATTTATTTCCGC 59.132 38.462 0.00 0.00 42.84 5.54
2753 3011 7.255942 CCCTGATAAAATGGATTTATTTCCGCT 60.256 37.037 0.00 0.00 42.84 5.52
2754 3012 8.143835 CCTGATAAAATGGATTTATTTCCGCTT 58.856 33.333 0.00 0.00 42.84 4.68
2755 3013 8.870160 TGATAAAATGGATTTATTTCCGCTTG 57.130 30.769 0.00 0.00 42.84 4.01
2756 3014 7.437862 TGATAAAATGGATTTATTTCCGCTTGC 59.562 33.333 0.00 0.00 42.84 4.01
2764 3022 5.637006 TTTATTTCCGCTTGCAGTGTAAT 57.363 34.783 0.00 0.00 0.00 1.89
2775 3033 6.284459 GCTTGCAGTGTAATTCTAGGTAGAT 58.716 40.000 0.00 0.00 31.40 1.98
2825 3106 9.715121 TTACACTGTAATTCTAGGTCGATTTTT 57.285 29.630 0.00 0.00 0.00 1.94
2828 3109 8.318876 CACTGTAATTCTAGGTCGATTTTTACG 58.681 37.037 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.107017 CCGGGGAACAGAATGCATCT 60.107 55.000 0.00 0.00 42.53 2.90
28 29 0.611896 AAAGGCCGGGGAACAGAATG 60.612 55.000 2.18 0.00 46.00 2.67
40 41 1.766496 TGGTCTAGGGATTAAAGGCCG 59.234 52.381 0.00 0.00 0.00 6.13
131 141 0.827507 ATGGGGGTTGCACTGTGAAC 60.828 55.000 12.86 12.28 0.00 3.18
134 144 1.114722 ACAATGGGGGTTGCACTGTG 61.115 55.000 2.76 2.76 32.32 3.66
179 189 9.865321 AGTGAAAATCAATGAAAATCCAGTATG 57.135 29.630 0.00 0.00 0.00 2.39
180 190 9.865321 CAGTGAAAATCAATGAAAATCCAGTAT 57.135 29.630 1.83 0.00 44.38 2.12
181 191 8.859090 ACAGTGAAAATCAATGAAAATCCAGTA 58.141 29.630 13.94 0.00 44.38 2.74
182 192 7.729116 ACAGTGAAAATCAATGAAAATCCAGT 58.271 30.769 13.94 0.00 44.38 4.00
183 193 9.695526 TTACAGTGAAAATCAATGAAAATCCAG 57.304 29.630 13.94 0.00 44.38 3.86
191 201 9.725019 ACTACAGATTACAGTGAAAATCAATGA 57.275 29.630 13.94 0.00 44.38 2.57
194 204 9.554395 TCAACTACAGATTACAGTGAAAATCAA 57.446 29.630 18.61 8.14 35.07 2.57
195 205 9.725019 ATCAACTACAGATTACAGTGAAAATCA 57.275 29.630 18.61 4.59 35.07 2.57
199 209 8.999431 GGAAATCAACTACAGATTACAGTGAAA 58.001 33.333 0.00 0.00 34.78 2.69
204 246 7.604164 ACACTGGAAATCAACTACAGATTACAG 59.396 37.037 13.94 13.94 41.43 2.74
218 272 6.015519 CCACTGGAAAATTACACTGGAAATCA 60.016 38.462 0.00 0.00 29.37 2.57
333 387 5.456497 CAGTAGCAAATACAATGCAAATCCG 59.544 40.000 0.00 0.00 46.22 4.18
355 409 9.730705 ATTAGGACATATACATTGTCATTCCAG 57.269 33.333 7.16 0.00 44.22 3.86
362 416 9.144747 CACTGCTATTAGGACATATACATTGTC 57.855 37.037 0.00 0.00 42.20 3.18
382 443 2.552315 CCACCGACAAAAATACACTGCT 59.448 45.455 0.00 0.00 0.00 4.24
399 461 1.272212 CAAATACAGTGCAACCCCACC 59.728 52.381 0.00 0.00 37.80 4.61
434 497 6.115446 CACTGTACATCCCTGACAAATACAT 58.885 40.000 0.00 0.00 0.00 2.29
632 774 2.674852 ACACAAACTAGCGATGCATCAG 59.325 45.455 25.70 17.55 0.00 2.90
652 794 4.959596 ATCAGATGCATCACAAGAACAC 57.040 40.909 27.81 0.00 0.00 3.32
914 1059 4.638421 TGGCAGAAGGGATAAAACATAACG 59.362 41.667 0.00 0.00 0.00 3.18
948 1093 8.341903 ACAAAACAAAGAAAAGGACAAAAAGTG 58.658 29.630 0.00 0.00 0.00 3.16
1012 1158 5.567430 AGTACCCTTACCAAAATCCTTCAC 58.433 41.667 0.00 0.00 0.00 3.18
1019 1165 5.010282 CAGCAGAAGTACCCTTACCAAAAT 58.990 41.667 0.00 0.00 0.00 1.82
1076 1222 5.869344 GCAAAATCATTAGGGACAAAAGGAC 59.131 40.000 0.00 0.00 0.00 3.85
1089 1235 4.761739 GGATCATCCTCCGCAAAATCATTA 59.238 41.667 0.00 0.00 32.53 1.90
1218 1402 5.239306 TCCTGCAGTTAACAGATGAAACAAG 59.761 40.000 13.81 0.00 37.32 3.16
1246 1430 5.297776 GTCGAAATCAGGATCATCCATTTGT 59.702 40.000 6.42 0.00 39.61 2.83
1315 1499 6.952773 AACTGGTACAAAAGCATCAACTAA 57.047 33.333 0.00 0.00 38.70 2.24
1321 1505 6.319141 AGAAGAAACTGGTACAAAAGCATC 57.681 37.500 0.00 0.00 38.70 3.91
1364 1548 9.202273 TGCATTAACTGATACAAAAATGAAACC 57.798 29.630 0.00 0.00 0.00 3.27
1463 1668 2.095059 ACATTGCGAGCTCCAACATTTC 60.095 45.455 16.66 0.00 0.00 2.17
1469 1674 0.323302 TACCACATTGCGAGCTCCAA 59.677 50.000 16.66 16.66 0.00 3.53
1619 1832 8.697292 AGAACTATATGGAACTAGGTTCTTGTC 58.303 37.037 9.74 0.00 41.70 3.18
1875 2098 2.741145 GAGGTACCTCTGTCCTCACAT 58.259 52.381 31.12 0.00 44.85 3.21
2129 2355 7.936496 TGAAAAGGTCTACATCATGCAATTA 57.064 32.000 0.00 0.00 0.00 1.40
2136 2362 5.999044 AGCAGATGAAAAGGTCTACATCAT 58.001 37.500 0.00 0.00 40.74 2.45
2142 2368 5.645067 CACATGAAGCAGATGAAAAGGTCTA 59.355 40.000 0.00 0.00 0.00 2.59
2147 2373 6.252869 GCAATACACATGAAGCAGATGAAAAG 59.747 38.462 0.00 0.00 0.00 2.27
2213 2439 6.252233 TGAAAATGTGGAGATATTTGGGACA 58.748 36.000 0.00 0.00 0.00 4.02
2271 2523 3.132467 GGACAGAGGGAGTACCAATGTAC 59.868 52.174 1.62 0.00 46.36 2.90
2274 2526 1.486726 GGGACAGAGGGAGTACCAATG 59.513 57.143 0.00 0.00 43.89 2.82
2331 2583 8.269317 TCCGTCCCATAATATAAGAGTGTTTTT 58.731 33.333 0.00 0.00 0.00 1.94
2332 2584 7.798071 TCCGTCCCATAATATAAGAGTGTTTT 58.202 34.615 0.00 0.00 0.00 2.43
2333 2585 7.369551 TCCGTCCCATAATATAAGAGTGTTT 57.630 36.000 0.00 0.00 0.00 2.83
2334 2586 6.014499 CCTCCGTCCCATAATATAAGAGTGTT 60.014 42.308 0.00 0.00 0.00 3.32
2335 2587 5.480772 CCTCCGTCCCATAATATAAGAGTGT 59.519 44.000 0.00 0.00 0.00 3.55
2336 2588 5.105310 CCCTCCGTCCCATAATATAAGAGTG 60.105 48.000 0.00 0.00 0.00 3.51
2337 2589 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
2338 2590 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2339 2591 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2340 2592 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2341 2593 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2342 2594 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2343 2595 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2344 2596 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
2345 2597 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
2346 2598 4.044952 TCATATACTCCCTCCGTCCCATAA 59.955 45.833 0.00 0.00 0.00 1.90
2347 2599 3.594685 TCATATACTCCCTCCGTCCCATA 59.405 47.826 0.00 0.00 0.00 2.74
2348 2600 2.382305 TCATATACTCCCTCCGTCCCAT 59.618 50.000 0.00 0.00 0.00 4.00
2349 2601 1.784593 TCATATACTCCCTCCGTCCCA 59.215 52.381 0.00 0.00 0.00 4.37
2350 2602 2.041350 TCTCATATACTCCCTCCGTCCC 59.959 54.545 0.00 0.00 0.00 4.46
2351 2603 3.244981 ACTCTCATATACTCCCTCCGTCC 60.245 52.174 0.00 0.00 0.00 4.79
2352 2604 4.004982 GACTCTCATATACTCCCTCCGTC 58.995 52.174 0.00 0.00 0.00 4.79
2353 2605 3.653836 AGACTCTCATATACTCCCTCCGT 59.346 47.826 0.00 0.00 0.00 4.69
2354 2606 4.258543 GAGACTCTCATATACTCCCTCCG 58.741 52.174 0.76 0.00 0.00 4.63
2355 2607 4.291249 AGGAGACTCTCATATACTCCCTCC 59.709 50.000 8.35 0.00 45.53 4.30
2356 2608 5.514500 AGGAGACTCTCATATACTCCCTC 57.486 47.826 8.35 0.00 45.53 4.30
2357 2609 5.458948 CCAAGGAGACTCTCATATACTCCCT 60.459 48.000 8.35 0.00 45.53 4.20
2358 2610 4.770010 CCAAGGAGACTCTCATATACTCCC 59.230 50.000 8.35 0.00 45.53 4.30
2359 2611 4.219725 GCCAAGGAGACTCTCATATACTCC 59.780 50.000 8.35 0.00 44.97 3.85
2360 2612 4.830046 TGCCAAGGAGACTCTCATATACTC 59.170 45.833 8.35 0.00 42.68 2.59
2361 2613 4.809193 TGCCAAGGAGACTCTCATATACT 58.191 43.478 8.35 0.00 42.68 2.12
2362 2614 4.586841 ACTGCCAAGGAGACTCTCATATAC 59.413 45.833 8.35 0.00 42.68 1.47
2363 2615 4.809193 ACTGCCAAGGAGACTCTCATATA 58.191 43.478 8.35 0.00 42.68 0.86
2364 2616 3.652055 ACTGCCAAGGAGACTCTCATAT 58.348 45.455 8.35 0.00 42.68 1.78
2384 2636 9.645059 AACCTTCGTAGTATCCTTAAACTTTAC 57.355 33.333 0.00 0.00 0.00 2.01
2418 2675 2.292267 CGCCAAATGCCACTTATCTCT 58.708 47.619 0.00 0.00 36.24 3.10
2424 2681 1.367102 CAACCGCCAAATGCCACTT 59.633 52.632 0.00 0.00 36.24 3.16
2426 2683 1.372872 GACAACCGCCAAATGCCAC 60.373 57.895 0.00 0.00 36.24 5.01
2429 2686 0.878416 TAGTGACAACCGCCAAATGC 59.122 50.000 0.00 0.00 0.00 3.56
2517 2775 9.729023 CTAGTTCAACATCATTACACACAAAAA 57.271 29.630 0.00 0.00 0.00 1.94
2519 2777 7.359595 GCTAGTTCAACATCATTACACACAAA 58.640 34.615 0.00 0.00 0.00 2.83
2520 2778 6.072728 GGCTAGTTCAACATCATTACACACAA 60.073 38.462 0.00 0.00 0.00 3.33
2521 2779 5.411361 GGCTAGTTCAACATCATTACACACA 59.589 40.000 0.00 0.00 0.00 3.72
2522 2780 5.643777 AGGCTAGTTCAACATCATTACACAC 59.356 40.000 0.00 0.00 0.00 3.82
2524 2782 5.294552 GGAGGCTAGTTCAACATCATTACAC 59.705 44.000 0.00 0.00 0.00 2.90
2525 2783 5.428253 GGAGGCTAGTTCAACATCATTACA 58.572 41.667 0.00 0.00 0.00 2.41
2526 2784 4.816925 GGGAGGCTAGTTCAACATCATTAC 59.183 45.833 0.00 0.00 0.00 1.89
2527 2785 4.141482 GGGGAGGCTAGTTCAACATCATTA 60.141 45.833 0.00 0.00 0.00 1.90
2529 2787 2.173569 GGGGAGGCTAGTTCAACATCAT 59.826 50.000 0.00 0.00 0.00 2.45
2530 2788 1.559682 GGGGAGGCTAGTTCAACATCA 59.440 52.381 0.00 0.00 0.00 3.07
2531 2789 1.840635 AGGGGAGGCTAGTTCAACATC 59.159 52.381 0.00 0.00 0.00 3.06
2533 2791 1.628846 GAAGGGGAGGCTAGTTCAACA 59.371 52.381 0.00 0.00 0.00 3.33
2534 2792 1.909986 AGAAGGGGAGGCTAGTTCAAC 59.090 52.381 0.00 0.00 0.00 3.18
2536 2794 2.344093 AAGAAGGGGAGGCTAGTTCA 57.656 50.000 0.00 0.00 0.00 3.18
2537 2795 3.722908 AAAAGAAGGGGAGGCTAGTTC 57.277 47.619 0.00 0.00 0.00 3.01
2538 2796 3.658216 AGAAAAAGAAGGGGAGGCTAGTT 59.342 43.478 0.00 0.00 0.00 2.24
2539 2797 3.009584 CAGAAAAAGAAGGGGAGGCTAGT 59.990 47.826 0.00 0.00 0.00 2.57
2540 2798 3.615155 CAGAAAAAGAAGGGGAGGCTAG 58.385 50.000 0.00 0.00 0.00 3.42
2541 2799 2.290960 GCAGAAAAAGAAGGGGAGGCTA 60.291 50.000 0.00 0.00 0.00 3.93
2542 2800 1.548809 GCAGAAAAAGAAGGGGAGGCT 60.549 52.381 0.00 0.00 0.00 4.58
2543 2801 0.891373 GCAGAAAAAGAAGGGGAGGC 59.109 55.000 0.00 0.00 0.00 4.70
2544 2802 2.593925 AGCAGAAAAAGAAGGGGAGG 57.406 50.000 0.00 0.00 0.00 4.30
2545 2803 3.009584 ACCTAGCAGAAAAAGAAGGGGAG 59.990 47.826 0.00 0.00 0.00 4.30
2546 2804 2.986728 ACCTAGCAGAAAAAGAAGGGGA 59.013 45.455 0.00 0.00 0.00 4.81
2547 2805 3.009584 AGACCTAGCAGAAAAAGAAGGGG 59.990 47.826 0.00 0.00 0.00 4.79
2548 2806 4.257731 GAGACCTAGCAGAAAAAGAAGGG 58.742 47.826 0.00 0.00 0.00 3.95
2549 2807 4.899502 TGAGACCTAGCAGAAAAAGAAGG 58.100 43.478 0.00 0.00 0.00 3.46
2550 2808 7.440856 GGATATGAGACCTAGCAGAAAAAGAAG 59.559 40.741 0.00 0.00 0.00 2.85
2551 2809 7.126421 AGGATATGAGACCTAGCAGAAAAAGAA 59.874 37.037 0.00 0.00 34.47 2.52
2552 2810 6.613271 AGGATATGAGACCTAGCAGAAAAAGA 59.387 38.462 0.00 0.00 34.47 2.52
2553 2811 6.705381 CAGGATATGAGACCTAGCAGAAAAAG 59.295 42.308 0.00 0.00 34.87 2.27
2554 2812 6.384015 TCAGGATATGAGACCTAGCAGAAAAA 59.616 38.462 0.00 0.00 34.87 1.94
2555 2813 5.899547 TCAGGATATGAGACCTAGCAGAAAA 59.100 40.000 0.00 0.00 34.87 2.29
2556 2814 5.303078 GTCAGGATATGAGACCTAGCAGAAA 59.697 44.000 0.00 0.00 39.07 2.52
2557 2815 4.830046 GTCAGGATATGAGACCTAGCAGAA 59.170 45.833 0.00 0.00 39.07 3.02
2558 2816 4.402829 GTCAGGATATGAGACCTAGCAGA 58.597 47.826 0.00 0.00 39.07 4.26
2559 2817 3.509575 GGTCAGGATATGAGACCTAGCAG 59.490 52.174 0.00 0.00 46.45 4.24
2560 2818 3.501349 GGTCAGGATATGAGACCTAGCA 58.499 50.000 0.00 0.00 46.45 3.49
2566 2824 3.181462 TGCACATGGTCAGGATATGAGAC 60.181 47.826 0.00 0.00 39.07 3.36
2567 2825 3.040477 TGCACATGGTCAGGATATGAGA 58.960 45.455 0.00 0.00 39.07 3.27
2568 2826 3.480505 TGCACATGGTCAGGATATGAG 57.519 47.619 0.00 0.00 39.07 2.90
2569 2827 4.442401 AATGCACATGGTCAGGATATGA 57.558 40.909 0.00 0.00 34.79 2.15
2570 2828 5.286438 CAAAATGCACATGGTCAGGATATG 58.714 41.667 0.00 0.00 0.00 1.78
2571 2829 4.342951 CCAAAATGCACATGGTCAGGATAT 59.657 41.667 0.00 0.00 0.00 1.63
2572 2830 3.700539 CCAAAATGCACATGGTCAGGATA 59.299 43.478 0.00 0.00 0.00 2.59
2573 2831 2.498481 CCAAAATGCACATGGTCAGGAT 59.502 45.455 0.00 0.00 0.00 3.24
2574 2832 1.894466 CCAAAATGCACATGGTCAGGA 59.106 47.619 0.00 0.00 0.00 3.86
2575 2833 1.066716 CCCAAAATGCACATGGTCAGG 60.067 52.381 11.94 0.00 32.13 3.86
2576 2834 1.673626 GCCCAAAATGCACATGGTCAG 60.674 52.381 11.94 0.75 32.13 3.51
2577 2835 0.321021 GCCCAAAATGCACATGGTCA 59.679 50.000 11.94 0.00 32.13 4.02
2578 2836 0.609662 AGCCCAAAATGCACATGGTC 59.390 50.000 11.94 1.15 32.13 4.02
2579 2837 0.322322 CAGCCCAAAATGCACATGGT 59.678 50.000 11.94 0.00 32.13 3.55
2580 2838 0.609151 TCAGCCCAAAATGCACATGG 59.391 50.000 7.17 7.17 0.00 3.66
2581 2839 2.459060 TTCAGCCCAAAATGCACATG 57.541 45.000 0.00 0.00 0.00 3.21
2582 2840 3.262405 AGAATTCAGCCCAAAATGCACAT 59.738 39.130 8.44 0.00 0.00 3.21
2583 2841 2.633967 AGAATTCAGCCCAAAATGCACA 59.366 40.909 8.44 0.00 0.00 4.57
2584 2842 3.056322 AGAGAATTCAGCCCAAAATGCAC 60.056 43.478 8.44 0.00 0.00 4.57
2585 2843 3.167485 AGAGAATTCAGCCCAAAATGCA 58.833 40.909 8.44 0.00 0.00 3.96
2586 2844 3.881937 AGAGAATTCAGCCCAAAATGC 57.118 42.857 8.44 0.00 0.00 3.56
2587 2845 5.902613 TGTAGAGAATTCAGCCCAAAATG 57.097 39.130 8.44 0.00 0.00 2.32
2588 2846 6.189859 TCATGTAGAGAATTCAGCCCAAAAT 58.810 36.000 8.44 0.00 0.00 1.82
2589 2847 5.569355 TCATGTAGAGAATTCAGCCCAAAA 58.431 37.500 8.44 0.00 0.00 2.44
2590 2848 5.178096 TCATGTAGAGAATTCAGCCCAAA 57.822 39.130 8.44 0.00 0.00 3.28
2591 2849 4.842531 TCATGTAGAGAATTCAGCCCAA 57.157 40.909 8.44 0.00 0.00 4.12
2592 2850 5.221722 GGTATCATGTAGAGAATTCAGCCCA 60.222 44.000 8.44 0.00 0.00 5.36
2593 2851 5.221722 TGGTATCATGTAGAGAATTCAGCCC 60.222 44.000 8.44 0.00 0.00 5.19
2594 2852 5.858381 TGGTATCATGTAGAGAATTCAGCC 58.142 41.667 8.44 0.00 0.00 4.85
2595 2853 6.073331 GCTTGGTATCATGTAGAGAATTCAGC 60.073 42.308 8.44 0.00 0.00 4.26
2596 2854 6.426328 GGCTTGGTATCATGTAGAGAATTCAG 59.574 42.308 8.44 0.00 0.00 3.02
2597 2855 6.100279 AGGCTTGGTATCATGTAGAGAATTCA 59.900 38.462 8.44 0.00 0.00 2.57
2598 2856 6.529220 AGGCTTGGTATCATGTAGAGAATTC 58.471 40.000 0.00 0.00 0.00 2.17
2599 2857 6.506538 AGGCTTGGTATCATGTAGAGAATT 57.493 37.500 0.00 0.00 0.00 2.17
2600 2858 6.212388 CCTAGGCTTGGTATCATGTAGAGAAT 59.788 42.308 6.84 0.00 0.00 2.40
2601 2859 5.540337 CCTAGGCTTGGTATCATGTAGAGAA 59.460 44.000 6.84 0.00 0.00 2.87
2602 2860 5.080337 CCTAGGCTTGGTATCATGTAGAGA 58.920 45.833 6.84 0.00 0.00 3.10
2603 2861 4.221703 CCCTAGGCTTGGTATCATGTAGAG 59.778 50.000 13.93 0.00 0.00 2.43
2604 2862 4.160329 CCCTAGGCTTGGTATCATGTAGA 58.840 47.826 13.93 0.00 0.00 2.59
2605 2863 3.904339 ACCCTAGGCTTGGTATCATGTAG 59.096 47.826 13.93 0.00 31.61 2.74
2606 2864 3.936461 ACCCTAGGCTTGGTATCATGTA 58.064 45.455 13.93 0.00 31.61 2.29
2607 2865 2.776665 ACCCTAGGCTTGGTATCATGT 58.223 47.619 13.93 0.68 31.61 3.21
2608 2866 3.904339 AGTACCCTAGGCTTGGTATCATG 59.096 47.826 13.93 0.05 39.22 3.07
2609 2867 4.214993 AGTACCCTAGGCTTGGTATCAT 57.785 45.455 13.93 4.02 39.22 2.45
2610 2868 3.700863 AGTACCCTAGGCTTGGTATCA 57.299 47.619 13.93 0.00 39.22 2.15
2611 2869 3.710165 ACAAGTACCCTAGGCTTGGTATC 59.290 47.826 23.54 9.69 42.60 2.24
2612 2870 3.710165 GACAAGTACCCTAGGCTTGGTAT 59.290 47.826 23.54 9.55 42.60 2.73
2613 2871 3.102204 GACAAGTACCCTAGGCTTGGTA 58.898 50.000 23.54 12.11 42.60 3.25
2614 2872 1.907255 GACAAGTACCCTAGGCTTGGT 59.093 52.381 23.54 13.08 42.60 3.67
2615 2873 2.093447 CAGACAAGTACCCTAGGCTTGG 60.093 54.545 23.54 8.11 42.60 3.61
2616 2874 2.093447 CCAGACAAGTACCCTAGGCTTG 60.093 54.545 20.14 20.14 43.56 4.01
2617 2875 2.188817 CCAGACAAGTACCCTAGGCTT 58.811 52.381 2.05 0.00 0.00 4.35
2618 2876 1.361543 TCCAGACAAGTACCCTAGGCT 59.638 52.381 2.05 0.00 0.00 4.58
2619 2877 1.757699 CTCCAGACAAGTACCCTAGGC 59.242 57.143 2.05 0.00 0.00 3.93
2620 2878 3.292460 CTCTCCAGACAAGTACCCTAGG 58.708 54.545 0.06 0.06 0.00 3.02
2621 2879 3.292460 CCTCTCCAGACAAGTACCCTAG 58.708 54.545 0.00 0.00 0.00 3.02
2622 2880 2.653366 ACCTCTCCAGACAAGTACCCTA 59.347 50.000 0.00 0.00 0.00 3.53
2623 2881 1.433592 ACCTCTCCAGACAAGTACCCT 59.566 52.381 0.00 0.00 0.00 4.34
2624 2882 1.939980 ACCTCTCCAGACAAGTACCC 58.060 55.000 0.00 0.00 0.00 3.69
2625 2883 5.655532 TGTATTACCTCTCCAGACAAGTACC 59.344 44.000 0.00 0.00 0.00 3.34
2626 2884 6.377712 ACTGTATTACCTCTCCAGACAAGTAC 59.622 42.308 0.00 0.00 0.00 2.73
2627 2885 6.491383 ACTGTATTACCTCTCCAGACAAGTA 58.509 40.000 0.00 0.00 0.00 2.24
2628 2886 5.334421 ACTGTATTACCTCTCCAGACAAGT 58.666 41.667 0.00 0.00 0.00 3.16
2629 2887 5.923733 ACTGTATTACCTCTCCAGACAAG 57.076 43.478 0.00 0.00 0.00 3.16
2630 2888 7.578955 GCTTAACTGTATTACCTCTCCAGACAA 60.579 40.741 0.00 0.00 0.00 3.18
2631 2889 6.127423 GCTTAACTGTATTACCTCTCCAGACA 60.127 42.308 0.00 0.00 0.00 3.41
2632 2890 6.127423 TGCTTAACTGTATTACCTCTCCAGAC 60.127 42.308 0.00 0.00 0.00 3.51
2633 2891 5.955959 TGCTTAACTGTATTACCTCTCCAGA 59.044 40.000 0.00 0.00 0.00 3.86
2634 2892 6.222038 TGCTTAACTGTATTACCTCTCCAG 57.778 41.667 0.00 0.00 0.00 3.86
2635 2893 6.808321 ATGCTTAACTGTATTACCTCTCCA 57.192 37.500 0.00 0.00 0.00 3.86
2636 2894 7.988028 AGAAATGCTTAACTGTATTACCTCTCC 59.012 37.037 0.00 0.00 0.00 3.71
2637 2895 8.950208 AGAAATGCTTAACTGTATTACCTCTC 57.050 34.615 0.00 0.00 0.00 3.20
2638 2896 7.707035 CGAGAAATGCTTAACTGTATTACCTCT 59.293 37.037 0.00 0.00 0.00 3.69
2639 2897 7.042658 CCGAGAAATGCTTAACTGTATTACCTC 60.043 40.741 0.00 0.00 0.00 3.85
2640 2898 6.761714 CCGAGAAATGCTTAACTGTATTACCT 59.238 38.462 0.00 0.00 0.00 3.08
2641 2899 6.759827 TCCGAGAAATGCTTAACTGTATTACC 59.240 38.462 0.00 0.00 0.00 2.85
2642 2900 7.766219 TCCGAGAAATGCTTAACTGTATTAC 57.234 36.000 0.00 0.00 0.00 1.89
2643 2901 8.038944 AGTTCCGAGAAATGCTTAACTGTATTA 58.961 33.333 0.00 0.00 0.00 0.98
2644 2902 6.879458 AGTTCCGAGAAATGCTTAACTGTATT 59.121 34.615 0.00 0.00 0.00 1.89
2645 2903 6.407202 AGTTCCGAGAAATGCTTAACTGTAT 58.593 36.000 0.00 0.00 0.00 2.29
2646 2904 5.790593 AGTTCCGAGAAATGCTTAACTGTA 58.209 37.500 0.00 0.00 0.00 2.74
2647 2905 4.642429 AGTTCCGAGAAATGCTTAACTGT 58.358 39.130 0.00 0.00 0.00 3.55
2648 2906 6.100004 TCTAGTTCCGAGAAATGCTTAACTG 58.900 40.000 0.00 0.00 31.25 3.16
2649 2907 6.282199 TCTAGTTCCGAGAAATGCTTAACT 57.718 37.500 0.00 0.00 32.57 2.24
2650 2908 8.644318 TTATCTAGTTCCGAGAAATGCTTAAC 57.356 34.615 0.00 0.00 0.00 2.01
2651 2909 8.692710 TCTTATCTAGTTCCGAGAAATGCTTAA 58.307 33.333 0.00 0.00 0.00 1.85
2652 2910 8.234136 TCTTATCTAGTTCCGAGAAATGCTTA 57.766 34.615 0.00 0.00 0.00 3.09
2653 2911 7.113658 TCTTATCTAGTTCCGAGAAATGCTT 57.886 36.000 0.00 0.00 0.00 3.91
2654 2912 6.716934 TCTTATCTAGTTCCGAGAAATGCT 57.283 37.500 0.00 0.00 0.00 3.79
2655 2913 6.757010 TGTTCTTATCTAGTTCCGAGAAATGC 59.243 38.462 0.00 0.00 0.00 3.56
2656 2914 8.703604 TTGTTCTTATCTAGTTCCGAGAAATG 57.296 34.615 0.00 0.00 0.00 2.32
2657 2915 8.532819 ACTTGTTCTTATCTAGTTCCGAGAAAT 58.467 33.333 0.00 0.00 0.00 2.17
2658 2916 7.813148 CACTTGTTCTTATCTAGTTCCGAGAAA 59.187 37.037 0.00 0.00 0.00 2.52
2659 2917 7.313646 CACTTGTTCTTATCTAGTTCCGAGAA 58.686 38.462 0.00 0.00 0.00 2.87
2660 2918 6.127703 CCACTTGTTCTTATCTAGTTCCGAGA 60.128 42.308 0.00 0.00 0.00 4.04
2661 2919 6.037098 CCACTTGTTCTTATCTAGTTCCGAG 58.963 44.000 0.00 0.00 0.00 4.63
2662 2920 5.713389 TCCACTTGTTCTTATCTAGTTCCGA 59.287 40.000 0.00 0.00 0.00 4.55
2663 2921 5.962433 TCCACTTGTTCTTATCTAGTTCCG 58.038 41.667 0.00 0.00 0.00 4.30
2664 2922 8.794335 AAATCCACTTGTTCTTATCTAGTTCC 57.206 34.615 0.00 0.00 0.00 3.62
2672 2930 9.533831 ACCAGAAATAAATCCACTTGTTCTTAT 57.466 29.630 0.00 0.00 0.00 1.73
2673 2931 8.934023 ACCAGAAATAAATCCACTTGTTCTTA 57.066 30.769 0.00 0.00 0.00 2.10
2674 2932 7.505585 TGACCAGAAATAAATCCACTTGTTCTT 59.494 33.333 0.00 0.00 0.00 2.52
2675 2933 7.004086 TGACCAGAAATAAATCCACTTGTTCT 58.996 34.615 0.00 0.00 0.00 3.01
2676 2934 7.214467 TGACCAGAAATAAATCCACTTGTTC 57.786 36.000 0.00 0.00 0.00 3.18
2677 2935 7.233348 ACATGACCAGAAATAAATCCACTTGTT 59.767 33.333 0.00 0.00 0.00 2.83
2678 2936 6.721208 ACATGACCAGAAATAAATCCACTTGT 59.279 34.615 0.00 0.00 0.00 3.16
2679 2937 7.161773 ACATGACCAGAAATAAATCCACTTG 57.838 36.000 0.00 0.00 0.00 3.16
2692 2950 2.568956 CTGGAAGAGGACATGACCAGAA 59.431 50.000 16.63 0.00 45.02 3.02
2694 2952 1.905215 ACTGGAAGAGGACATGACCAG 59.095 52.381 16.63 14.64 46.78 4.00
2695 2953 2.030027 ACTGGAAGAGGACATGACCA 57.970 50.000 16.63 5.12 37.43 4.02
2696 2954 3.425162 AAACTGGAAGAGGACATGACC 57.575 47.619 6.05 6.05 37.43 4.02
2724 2982 9.147732 GGAAATAAATCCATTTTATCAGGGACT 57.852 33.333 0.00 0.00 39.15 3.85
2725 2983 8.082242 CGGAAATAAATCCATTTTATCAGGGAC 58.918 37.037 0.00 0.00 39.15 4.46
2726 2984 7.255801 GCGGAAATAAATCCATTTTATCAGGGA 60.256 37.037 0.00 0.00 39.15 4.20
2727 2985 6.868339 GCGGAAATAAATCCATTTTATCAGGG 59.132 38.462 0.00 0.00 39.15 4.45
2728 2986 7.661040 AGCGGAAATAAATCCATTTTATCAGG 58.339 34.615 0.00 0.00 39.15 3.86
2729 2987 8.971321 CAAGCGGAAATAAATCCATTTTATCAG 58.029 33.333 0.00 0.00 39.15 2.90
2730 2988 7.437862 GCAAGCGGAAATAAATCCATTTTATCA 59.562 33.333 0.00 0.00 39.15 2.15
2734 2992 5.486526 TGCAAGCGGAAATAAATCCATTTT 58.513 33.333 0.00 0.00 39.61 1.82
2735 2993 5.083533 TGCAAGCGGAAATAAATCCATTT 57.916 34.783 0.00 0.00 39.61 2.32
2737 2995 3.701040 ACTGCAAGCGGAAATAAATCCAT 59.299 39.130 8.05 0.00 37.08 3.41
2738 2996 3.088532 ACTGCAAGCGGAAATAAATCCA 58.911 40.909 8.05 0.00 37.08 3.41
2739 2997 3.119495 ACACTGCAAGCGGAAATAAATCC 60.119 43.478 8.05 0.00 37.60 3.01
2740 2998 4.096732 ACACTGCAAGCGGAAATAAATC 57.903 40.909 8.05 0.00 37.60 2.17
2741 2999 5.637006 TTACACTGCAAGCGGAAATAAAT 57.363 34.783 8.05 0.00 37.60 1.40
2742 3000 5.637006 ATTACACTGCAAGCGGAAATAAA 57.363 34.783 8.05 0.00 37.60 1.40
2743 3001 5.414454 AGAATTACACTGCAAGCGGAAATAA 59.586 36.000 8.05 3.75 37.60 1.40
2744 3002 4.941263 AGAATTACACTGCAAGCGGAAATA 59.059 37.500 8.05 0.00 37.60 1.40
2745 3003 3.758554 AGAATTACACTGCAAGCGGAAAT 59.241 39.130 8.05 2.07 37.60 2.17
2746 3004 3.146066 AGAATTACACTGCAAGCGGAAA 58.854 40.909 8.05 0.00 37.60 3.13
2747 3005 2.778299 AGAATTACACTGCAAGCGGAA 58.222 42.857 8.05 0.00 37.60 4.30
2748 3006 2.472695 AGAATTACACTGCAAGCGGA 57.527 45.000 8.05 0.00 37.60 5.54
2749 3007 2.609459 CCTAGAATTACACTGCAAGCGG 59.391 50.000 0.00 0.00 37.60 5.52
2750 3008 3.262420 ACCTAGAATTACACTGCAAGCG 58.738 45.455 0.00 0.00 37.60 4.68
2751 3009 5.661458 TCTACCTAGAATTACACTGCAAGC 58.339 41.667 0.00 0.00 37.60 4.01
2752 3010 8.723942 AAATCTACCTAGAATTACACTGCAAG 57.276 34.615 0.00 0.00 36.34 4.01
2753 3011 9.595823 GTAAATCTACCTAGAATTACACTGCAA 57.404 33.333 12.53 0.00 43.32 4.08
2754 3012 8.755028 TGTAAATCTACCTAGAATTACACTGCA 58.245 33.333 14.86 0.00 46.03 4.41
2755 3013 9.250624 CTGTAAATCTACCTAGAATTACACTGC 57.749 37.037 14.86 0.00 46.03 4.40
2792 3050 8.147244 ACCTAGAATTACAGTGTAAATCCACT 57.853 34.615 22.04 16.40 46.40 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.