Multiple sequence alignment - TraesCS2A01G243400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G243400 chr2A 100.000 5039 0 0 1 5039 342547491 342542453 0.000000e+00 9306.0
1 TraesCS2A01G243400 chr2A 94.286 105 4 2 3179 3283 14024426 14024324 5.220000e-35 159.0
2 TraesCS2A01G243400 chr2D 94.831 3250 79 28 1 3190 291957064 291953844 0.000000e+00 4988.0
3 TraesCS2A01G243400 chr2D 89.964 1096 38 24 3277 4329 291953837 291952771 0.000000e+00 1349.0
4 TraesCS2A01G243400 chr2D 93.289 447 27 3 4330 4775 291952693 291952249 0.000000e+00 656.0
5 TraesCS2A01G243400 chr2D 87.891 256 30 1 4772 5026 44696540 44696285 2.950000e-77 300.0
6 TraesCS2A01G243400 chr2D 86.111 252 34 1 4777 5027 543172830 543173081 2.310000e-68 270.0
7 TraesCS2A01G243400 chr2D 90.588 85 8 0 3627 3711 641069924 641069840 4.120000e-21 113.0
8 TraesCS2A01G243400 chr2D 93.548 62 4 0 4714 4775 572917041 572916980 5.370000e-15 93.5
9 TraesCS2A01G243400 chr2B 92.417 2176 62 35 234 2325 368340297 368338141 0.000000e+00 3009.0
10 TraesCS2A01G243400 chr2B 90.926 551 28 17 2349 2885 368338039 368337497 0.000000e+00 721.0
11 TraesCS2A01G243400 chr2B 93.548 341 10 4 3739 4067 368336771 368336431 9.740000e-137 497.0
12 TraesCS2A01G243400 chr2B 96.996 233 7 0 2950 3182 368337409 368337177 4.730000e-105 392.0
13 TraesCS2A01G243400 chr2B 93.220 236 10 3 1 230 368340986 368340751 4.830000e-90 342.0
14 TraesCS2A01G243400 chr2B 85.385 260 28 7 3341 3596 368337092 368336839 1.390000e-65 261.0
15 TraesCS2A01G243400 chr2B 87.234 235 21 6 4330 4561 368335968 368335740 5.000000e-65 259.0
16 TraesCS2A01G243400 chr2B 85.020 247 10 5 4099 4321 368336286 368336043 5.080000e-55 226.0
17 TraesCS2A01G243400 chr2B 80.970 268 44 6 4776 5039 655019492 655019228 6.610000e-49 206.0
18 TraesCS2A01G243400 chr2B 92.593 108 7 1 3196 3303 5009053 5009159 2.430000e-33 154.0
19 TraesCS2A01G243400 chr5B 75.894 1091 215 31 1071 2131 605822430 605823502 9.670000e-142 514.0
20 TraesCS2A01G243400 chr5D 75.480 1093 216 34 1071 2131 491095719 491096791 2.110000e-133 486.0
21 TraesCS2A01G243400 chr5D 87.958 191 23 0 4578 4768 548858985 548858795 5.080000e-55 226.0
22 TraesCS2A01G243400 chr5A 75.413 1090 222 32 1071 2131 613540122 613541194 2.110000e-133 486.0
23 TraesCS2A01G243400 chr5A 88.258 264 30 1 4777 5039 676956278 676956541 1.050000e-81 315.0
24 TraesCS2A01G243400 chr5A 87.324 213 27 0 4777 4989 676959066 676958854 1.400000e-60 244.0
25 TraesCS2A01G243400 chr5A 91.667 96 7 1 3627 3722 40096850 40096756 1.140000e-26 132.0
26 TraesCS2A01G243400 chr5A 89.583 96 8 2 3618 3712 474540545 474540451 2.460000e-23 121.0
27 TraesCS2A01G243400 chr4A 89.098 266 28 1 4775 5039 684447204 684446939 3.760000e-86 329.0
28 TraesCS2A01G243400 chr3A 87.121 264 33 1 4777 5039 22120035 22120298 1.060000e-76 298.0
29 TraesCS2A01G243400 chr3A 93.519 108 3 4 3193 3299 123651366 123651470 1.880000e-34 158.0
30 TraesCS2A01G243400 chr3D 87.698 252 30 1 4777 5027 468549137 468548886 4.930000e-75 292.0
31 TraesCS2A01G243400 chr3D 95.098 102 5 0 3189 3290 331018054 331017953 1.450000e-35 161.0
32 TraesCS2A01G243400 chr3D 94.286 35 1 1 3678 3712 465788029 465788062 9.000000e-03 52.8
33 TraesCS2A01G243400 chr6B 90.547 201 17 2 4576 4775 163658114 163657915 1.080000e-66 265.0
34 TraesCS2A01G243400 chr6B 82.828 198 17 10 4578 4775 2635278 2635098 1.450000e-35 161.0
35 TraesCS2A01G243400 chr3B 90.000 200 16 3 4576 4775 825474134 825474329 6.470000e-64 255.0
36 TraesCS2A01G243400 chr3B 89.500 200 17 3 4576 4775 618007311 618007116 3.010000e-62 250.0
37 TraesCS2A01G243400 chr3B 96.000 100 2 2 3186 3285 777762471 777762568 1.450000e-35 161.0
38 TraesCS2A01G243400 chr3B 81.481 81 13 2 3627 3707 490589331 490589409 1.170000e-06 65.8
39 TraesCS2A01G243400 chr4B 89.950 199 14 5 4578 4775 21934284 21934091 8.370000e-63 252.0
40 TraesCS2A01G243400 chr4B 96.000 100 3 1 3182 3280 403270679 403270778 1.450000e-35 161.0
41 TraesCS2A01G243400 chr1D 86.937 222 27 2 4772 4992 234065769 234065549 1.080000e-61 248.0
42 TraesCS2A01G243400 chr6D 88.947 190 20 1 4586 4775 9873792 9873980 3.030000e-57 233.0
43 TraesCS2A01G243400 chr6D 88.764 178 20 0 4598 4775 27099868 27099691 8.490000e-53 219.0
44 TraesCS2A01G243400 chr6D 90.991 111 9 1 3185 3295 462231851 462231742 1.130000e-31 148.0
45 TraesCS2A01G243400 chr1A 81.783 258 44 2 3773 4030 444171335 444171081 3.950000e-51 213.0
46 TraesCS2A01G243400 chr7B 95.098 102 4 1 3189 3290 616553141 616553241 5.220000e-35 159.0
47 TraesCS2A01G243400 chr7B 89.412 85 9 0 3627 3711 704289168 704289252 1.920000e-19 108.0
48 TraesCS2A01G243400 chr7B 82.022 89 10 5 3627 3712 351982963 351982878 2.520000e-08 71.3
49 TraesCS2A01G243400 chr1B 93.458 107 5 2 3191 3296 654313665 654313560 1.880000e-34 158.0
50 TraesCS2A01G243400 chr4D 85.821 134 16 1 3897 4030 3385830 3385960 6.800000e-29 139.0
51 TraesCS2A01G243400 chr7D 91.011 89 8 0 3624 3712 467922506 467922594 2.460000e-23 121.0
52 TraesCS2A01G243400 chr7A 88.235 85 10 0 3627 3711 628670534 628670450 8.930000e-18 102.0
53 TraesCS2A01G243400 chr6A 90.909 66 6 0 3627 3692 475259449 475259514 6.950000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G243400 chr2A 342542453 342547491 5038 True 9306.000 9306 100.000000 1 5039 1 chr2A.!!$R2 5038
1 TraesCS2A01G243400 chr2D 291952249 291957064 4815 True 2331.000 4988 92.694667 1 4775 3 chr2D.!!$R4 4774
2 TraesCS2A01G243400 chr2B 368335740 368340986 5246 True 713.375 3009 90.593250 1 4561 8 chr2B.!!$R2 4560
3 TraesCS2A01G243400 chr5B 605822430 605823502 1072 False 514.000 514 75.894000 1071 2131 1 chr5B.!!$F1 1060
4 TraesCS2A01G243400 chr5D 491095719 491096791 1072 False 486.000 486 75.480000 1071 2131 1 chr5D.!!$F1 1060
5 TraesCS2A01G243400 chr5A 613540122 613541194 1072 False 486.000 486 75.413000 1071 2131 1 chr5A.!!$F1 1060

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 1015 0.104934 AAGGTGAGGTGAGGTGAGGT 60.105 55.000 0.00 0.0 0.00 3.85 F
555 1022 0.108019 GGTGAGGTGAGGTTCCGTTT 59.892 55.000 0.00 0.0 0.00 3.60 F
1419 1947 0.317160 TCGTCAACGTCAGCTCCAAT 59.683 50.000 2.09 0.0 40.80 3.16 F
1503 2031 1.075482 CCACAACATGCTGGGAGGT 59.925 57.895 0.00 0.0 0.00 3.85 F
2810 3496 1.214589 CCTCGACGATTCCACCGTT 59.785 57.895 0.00 0.0 40.67 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2576 0.458025 GTTGGCCGAGAAGAGTACCG 60.458 60.0 0.00 0.0 0.00 4.02 R
2367 3025 0.620030 TAGCAGCAGCATTCCTTCCA 59.380 50.0 3.17 0.0 45.49 3.53 R
2810 3496 0.251354 AGACGAGGTAGAGGTGCGTA 59.749 55.0 0.00 0.0 35.09 4.42 R
2894 3580 1.673767 ACAATGGAGGTGAGTGGGAT 58.326 50.0 0.00 0.0 0.00 3.85 R
4712 5711 0.528466 CGTGGACATGAGCTATGCGT 60.528 55.0 0.00 0.0 40.59 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.410555 ACCAGGAAACAAGAGAGATATCCC 59.589 45.833 0.00 0.00 0.00 3.85
109 110 7.733969 TGAAAATATTGAGAGAGATCCCAGAG 58.266 38.462 0.00 0.00 0.00 3.35
230 237 5.213868 AGATAGTGGAAAGGGAGAGAGAA 57.786 43.478 0.00 0.00 0.00 2.87
369 826 3.480133 GTGATGCCCCGCCTACCT 61.480 66.667 0.00 0.00 0.00 3.08
396 853 3.952323 TCTGCCACAGTGGAGTATACTAC 59.048 47.826 24.96 8.29 40.96 2.73
398 855 6.151090 TCTGCCACAGTGGAGTATACTACTC 61.151 48.000 24.96 12.43 40.96 2.59
399 856 8.279084 TCTGCCACAGTGGAGTATACTACTCT 62.279 46.154 24.96 14.52 40.96 3.24
400 857 9.004015 TCTGCCACAGTGGAGTATACTACTCTA 62.004 44.444 24.96 3.54 42.90 2.43
456 913 4.379302 AAGCATATGATTCCCTCCCTTC 57.621 45.455 6.97 0.00 0.00 3.46
547 1014 1.059913 AAAGGTGAGGTGAGGTGAGG 58.940 55.000 0.00 0.00 0.00 3.86
548 1015 0.104934 AAGGTGAGGTGAGGTGAGGT 60.105 55.000 0.00 0.00 0.00 3.85
549 1016 0.104934 AGGTGAGGTGAGGTGAGGTT 60.105 55.000 0.00 0.00 0.00 3.50
550 1017 0.321996 GGTGAGGTGAGGTGAGGTTC 59.678 60.000 0.00 0.00 0.00 3.62
551 1018 0.321996 GTGAGGTGAGGTGAGGTTCC 59.678 60.000 0.00 0.00 0.00 3.62
552 1019 1.185618 TGAGGTGAGGTGAGGTTCCG 61.186 60.000 0.00 0.00 0.00 4.30
553 1020 1.152312 AGGTGAGGTGAGGTTCCGT 60.152 57.895 0.00 0.00 0.00 4.69
554 1021 0.763223 AGGTGAGGTGAGGTTCCGTT 60.763 55.000 0.00 0.00 0.00 4.44
555 1022 0.108019 GGTGAGGTGAGGTTCCGTTT 59.892 55.000 0.00 0.00 0.00 3.60
556 1023 1.345415 GGTGAGGTGAGGTTCCGTTTA 59.655 52.381 0.00 0.00 0.00 2.01
559 1026 3.683340 GTGAGGTGAGGTTCCGTTTAATC 59.317 47.826 0.00 0.00 0.00 1.75
660 1138 3.795688 TCCTCTTGCCAGTTCTTCAAT 57.204 42.857 0.00 0.00 0.00 2.57
766 1256 1.300465 CCATCAGTCGGCCAGATCG 60.300 63.158 2.24 0.00 0.00 3.69
897 1400 1.947456 GTCCCAGTGTCCAACAACTTC 59.053 52.381 0.00 0.00 0.00 3.01
937 1446 0.531532 CCTGCGCTAGAATCCCACAG 60.532 60.000 9.73 0.00 0.00 3.66
942 1451 1.478510 CGCTAGAATCCCACAGTCACT 59.521 52.381 0.00 0.00 0.00 3.41
1064 1583 4.133373 ATTGCTGCCGGGAGCCAT 62.133 61.111 40.30 33.28 42.71 4.40
1419 1947 0.317160 TCGTCAACGTCAGCTCCAAT 59.683 50.000 2.09 0.00 40.80 3.16
1503 2031 1.075482 CCACAACATGCTGGGAGGT 59.925 57.895 0.00 0.00 0.00 3.85
1664 2201 2.125350 GAACCTGCCGGAGCTGAG 60.125 66.667 5.05 0.00 40.18 3.35
2367 3025 1.419762 GTTGGGTTGGGAGGCAAAAAT 59.580 47.619 0.00 0.00 0.00 1.82
2377 3035 3.369787 GGGAGGCAAAAATGGAAGGAATG 60.370 47.826 0.00 0.00 0.00 2.67
2610 3296 7.484140 TCTTATACTGTAGTGCTCAACTCATG 58.516 38.462 0.00 0.00 40.56 3.07
2611 3297 5.921962 ATACTGTAGTGCTCAACTCATGA 57.078 39.130 0.00 0.00 40.56 3.07
2810 3496 1.214589 CCTCGACGATTCCACCGTT 59.785 57.895 0.00 0.00 40.67 4.44
2938 3630 9.379791 GTTACCTAGCTAGTGTTTTTGTCATAT 57.620 33.333 19.31 0.00 0.00 1.78
2939 3631 7.849804 ACCTAGCTAGTGTTTTTGTCATATG 57.150 36.000 19.31 0.00 0.00 1.78
2940 3632 7.394816 ACCTAGCTAGTGTTTTTGTCATATGT 58.605 34.615 19.31 1.58 0.00 2.29
2942 3634 9.547753 CCTAGCTAGTGTTTTTGTCATATGTAT 57.452 33.333 19.31 0.00 0.00 2.29
2955 3664 6.697395 TGTCATATGTATAATCGGAAGTGGG 58.303 40.000 1.90 0.00 0.00 4.61
3156 3865 3.209410 CAGCTACAACATCCCCATTCTC 58.791 50.000 0.00 0.00 0.00 2.87
3200 3909 5.366477 AGGTACTCCACTAGACTAGTACTCC 59.634 48.000 14.79 11.09 42.45 3.85
3201 3910 4.776435 ACTCCACTAGACTAGTACTCCC 57.224 50.000 14.79 0.00 37.23 4.30
3202 3911 4.373495 ACTCCACTAGACTAGTACTCCCT 58.627 47.826 14.79 0.00 37.23 4.20
3203 3912 4.409901 ACTCCACTAGACTAGTACTCCCTC 59.590 50.000 14.79 0.00 37.23 4.30
3204 3913 3.715834 TCCACTAGACTAGTACTCCCTCC 59.284 52.174 14.79 0.00 37.23 4.30
3205 3914 3.494749 CCACTAGACTAGTACTCCCTCCG 60.495 56.522 14.79 0.00 37.23 4.63
3206 3915 3.134442 CACTAGACTAGTACTCCCTCCGT 59.866 52.174 14.79 0.00 37.23 4.69
3207 3916 4.343526 CACTAGACTAGTACTCCCTCCGTA 59.656 50.000 14.79 0.00 37.23 4.02
3208 3917 4.965532 ACTAGACTAGTACTCCCTCCGTAA 59.034 45.833 13.63 0.00 37.23 3.18
3209 3918 4.851639 AGACTAGTACTCCCTCCGTAAA 57.148 45.455 0.00 0.00 0.00 2.01
3210 3919 4.522114 AGACTAGTACTCCCTCCGTAAAC 58.478 47.826 0.00 0.00 0.00 2.01
3212 3921 5.426833 AGACTAGTACTCCCTCCGTAAACTA 59.573 44.000 0.00 0.00 0.00 2.24
3213 3922 6.067217 ACTAGTACTCCCTCCGTAAACTAA 57.933 41.667 0.00 0.00 0.00 2.24
3214 3923 6.667661 ACTAGTACTCCCTCCGTAAACTAAT 58.332 40.000 0.00 0.00 0.00 1.73
3216 3925 8.443979 ACTAGTACTCCCTCCGTAAACTAATAT 58.556 37.037 0.00 0.00 0.00 1.28
3217 3926 9.950496 CTAGTACTCCCTCCGTAAACTAATATA 57.050 37.037 0.00 0.00 0.00 0.86
3219 3928 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
3221 3930 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3222 3931 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
3223 3932 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
3224 3933 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
3225 3934 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
3274 3983 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3275 3984 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3388 4106 2.787473 CTGGAAGCAAGTATCCACCA 57.213 50.000 0.00 0.00 40.74 4.17
3415 4141 3.439129 GGTAGCCACTTAAACACATGGAC 59.561 47.826 0.00 0.00 33.80 4.02
3418 4144 4.579869 AGCCACTTAAACACATGGACTAG 58.420 43.478 0.00 0.00 33.80 2.57
3560 4286 2.440980 GCAGGCCCATCAGTTCCC 60.441 66.667 0.00 0.00 0.00 3.97
3625 4369 4.821805 TCCTTTCCTTGTCTTGTTGCTAAG 59.178 41.667 0.00 0.00 0.00 2.18
3630 4388 5.925509 TCCTTGTCTTGTTGCTAAGTACTT 58.074 37.500 13.68 13.68 0.00 2.24
3632 4390 5.758296 CCTTGTCTTGTTGCTAAGTACTTCA 59.242 40.000 12.39 1.75 0.00 3.02
3635 4393 5.932303 TGTCTTGTTGCTAAGTACTTCATCC 59.068 40.000 12.39 0.00 0.00 3.51
3652 4410 6.992715 ACTTCATCCGTCCCAAAATATAAGAG 59.007 38.462 0.00 0.00 0.00 2.85
3659 4417 5.737290 CGTCCCAAAATATAAGAGCGTTTTG 59.263 40.000 0.00 0.00 39.82 2.44
3660 4418 6.617879 GTCCCAAAATATAAGAGCGTTTTGT 58.382 36.000 8.15 0.00 38.97 2.83
3662 4420 8.403236 GTCCCAAAATATAAGAGCGTTTTGTAT 58.597 33.333 8.15 0.00 38.97 2.29
3672 4430 9.947669 ATAAGAGCGTTTTGTATACTAGTGTAG 57.052 33.333 5.39 0.00 31.51 2.74
3673 4431 7.388460 AGAGCGTTTTGTATACTAGTGTAGT 57.612 36.000 5.39 0.00 42.68 2.73
3674 4432 8.498054 AGAGCGTTTTGTATACTAGTGTAGTA 57.502 34.615 5.39 0.00 44.64 1.82
3676 4434 9.379811 GAGCGTTTTGTATACTAGTGTAGTATC 57.620 37.037 5.39 4.19 46.22 2.24
3700 4458 8.671384 TCAAAAACGGTCTTATATTATGGGAG 57.329 34.615 0.00 0.00 0.00 4.30
3701 4459 8.487848 TCAAAAACGGTCTTATATTATGGGAGA 58.512 33.333 0.00 0.00 0.00 3.71
3711 4469 9.086059 TCTTATATTATGGGAGAGAGGGAGTAT 57.914 37.037 0.00 0.00 0.00 2.12
3721 4479 9.760327 TGGGAGAGAGGGAGTATATTATATAGA 57.240 37.037 0.00 0.00 0.00 1.98
3801 4565 1.968540 GCTGACAGCACAAGGACCC 60.969 63.158 22.62 0.00 41.89 4.46
4026 4793 2.056223 GCAGCCCCATGCACAATCT 61.056 57.895 0.00 0.00 45.77 2.40
4088 4876 8.295288 ACGTCTAATACATCTAATAACTTCCCG 58.705 37.037 0.00 0.00 0.00 5.14
4090 4878 9.623350 GTCTAATACATCTAATAACTTCCCGAC 57.377 37.037 0.00 0.00 0.00 4.79
4256 5171 3.762288 GACCCCGTGATGCATATAGAGTA 59.238 47.826 0.00 0.00 0.00 2.59
4257 5172 3.510360 ACCCCGTGATGCATATAGAGTAC 59.490 47.826 0.00 0.00 0.00 2.73
4258 5173 3.764434 CCCCGTGATGCATATAGAGTACT 59.236 47.826 0.00 0.00 0.00 2.73
4259 5174 4.948004 CCCCGTGATGCATATAGAGTACTA 59.052 45.833 0.00 0.00 0.00 1.82
4260 5175 5.163642 CCCCGTGATGCATATAGAGTACTAC 60.164 48.000 0.00 0.00 0.00 2.73
4261 5176 5.414765 CCCGTGATGCATATAGAGTACTACA 59.585 44.000 0.00 0.00 0.00 2.74
4262 5177 6.403746 CCCGTGATGCATATAGAGTACTACAG 60.404 46.154 0.00 0.00 0.00 2.74
4263 5178 6.149640 CCGTGATGCATATAGAGTACTACAGT 59.850 42.308 0.00 0.00 0.00 3.55
4325 5243 8.392372 ACTTCTCAAATTAAGTAGAACCAACC 57.608 34.615 0.00 0.00 34.23 3.77
4375 5370 2.174639 TGTTCCCACAGTGTCCTGAAAT 59.825 45.455 0.00 0.00 41.50 2.17
4385 5380 5.067805 ACAGTGTCCTGAAATTTCCACTTTC 59.932 40.000 19.18 7.05 41.50 2.62
4483 5482 5.379706 AAAATAATGCTGCTACTCCCTCT 57.620 39.130 0.00 0.00 0.00 3.69
4629 5628 8.677300 TGAAATAACCATCTCACATCTAAAAGC 58.323 33.333 0.00 0.00 0.00 3.51
4679 5678 0.248825 TGTGCAAAACGTGATGGTGC 60.249 50.000 0.00 0.00 35.75 5.01
4712 5711 3.894257 CTCGTTGAGCCTTGTCTCA 57.106 52.632 0.00 0.00 40.99 3.27
4716 5715 0.880278 GTTGAGCCTTGTCTCACGCA 60.880 55.000 0.00 0.00 42.27 5.24
4730 5729 0.933097 CACGCATAGCTCATGTCCAC 59.067 55.000 0.00 0.00 36.95 4.02
4770 5769 1.568025 GGCCGTTGTCGTGTTTCTC 59.432 57.895 0.00 0.00 35.01 2.87
4775 5774 2.544277 CCGTTGTCGTGTTTCTCTGGTA 60.544 50.000 0.00 0.00 35.01 3.25
4776 5775 2.724690 CGTTGTCGTGTTTCTCTGGTAG 59.275 50.000 0.00 0.00 0.00 3.18
4777 5776 3.057734 GTTGTCGTGTTTCTCTGGTAGG 58.942 50.000 0.00 0.00 0.00 3.18
4778 5777 1.000506 TGTCGTGTTTCTCTGGTAGGC 59.999 52.381 0.00 0.00 0.00 3.93
4779 5778 1.000506 GTCGTGTTTCTCTGGTAGGCA 59.999 52.381 0.00 0.00 0.00 4.75
4780 5779 1.689813 TCGTGTTTCTCTGGTAGGCAA 59.310 47.619 0.00 0.00 0.00 4.52
4781 5780 2.103432 TCGTGTTTCTCTGGTAGGCAAA 59.897 45.455 0.00 0.00 0.00 3.68
4782 5781 3.074412 CGTGTTTCTCTGGTAGGCAAAT 58.926 45.455 0.00 0.00 0.00 2.32
4783 5782 3.502211 CGTGTTTCTCTGGTAGGCAAATT 59.498 43.478 0.00 0.00 0.00 1.82
4784 5783 4.693566 CGTGTTTCTCTGGTAGGCAAATTA 59.306 41.667 0.00 0.00 0.00 1.40
4785 5784 5.163854 CGTGTTTCTCTGGTAGGCAAATTAG 60.164 44.000 0.00 0.00 0.00 1.73
4786 5785 5.938125 GTGTTTCTCTGGTAGGCAAATTAGA 59.062 40.000 0.00 0.00 0.00 2.10
4787 5786 5.938125 TGTTTCTCTGGTAGGCAAATTAGAC 59.062 40.000 0.00 0.00 0.00 2.59
4788 5787 5.755409 TTCTCTGGTAGGCAAATTAGACA 57.245 39.130 0.00 0.00 0.00 3.41
4789 5788 5.755409 TCTCTGGTAGGCAAATTAGACAA 57.245 39.130 0.00 0.00 0.00 3.18
4790 5789 6.313519 TCTCTGGTAGGCAAATTAGACAAT 57.686 37.500 0.00 0.00 0.00 2.71
4791 5790 6.721318 TCTCTGGTAGGCAAATTAGACAATT 58.279 36.000 0.00 0.00 35.84 2.32
4792 5791 7.175104 TCTCTGGTAGGCAAATTAGACAATTT 58.825 34.615 0.00 0.00 43.59 1.82
4793 5792 7.669722 TCTCTGGTAGGCAAATTAGACAATTTT 59.330 33.333 0.00 0.00 41.41 1.82
4794 5793 7.601856 TCTGGTAGGCAAATTAGACAATTTTG 58.398 34.615 0.00 0.00 41.41 2.44
4795 5794 7.450014 TCTGGTAGGCAAATTAGACAATTTTGA 59.550 33.333 0.00 0.00 41.41 2.69
4796 5795 7.375053 TGGTAGGCAAATTAGACAATTTTGAC 58.625 34.615 0.00 0.00 41.41 3.18
4797 5796 6.811665 GGTAGGCAAATTAGACAATTTTGACC 59.188 38.462 0.00 0.00 41.41 4.02
4798 5797 6.670695 AGGCAAATTAGACAATTTTGACCT 57.329 33.333 0.00 0.00 41.41 3.85
4799 5798 7.775053 AGGCAAATTAGACAATTTTGACCTA 57.225 32.000 0.00 0.00 41.41 3.08
4800 5799 8.366359 AGGCAAATTAGACAATTTTGACCTAT 57.634 30.769 0.00 0.00 41.41 2.57
4801 5800 8.253113 AGGCAAATTAGACAATTTTGACCTATG 58.747 33.333 0.00 0.00 41.41 2.23
4802 5801 8.250332 GGCAAATTAGACAATTTTGACCTATGA 58.750 33.333 0.00 0.00 41.41 2.15
4803 5802 9.638239 GCAAATTAGACAATTTTGACCTATGAA 57.362 29.630 0.00 0.00 41.41 2.57
4805 5804 9.840427 AAATTAGACAATTTTGACCTATGAACG 57.160 29.630 0.00 0.00 40.67 3.95
4806 5805 8.786826 ATTAGACAATTTTGACCTATGAACGA 57.213 30.769 0.00 0.00 0.00 3.85
4807 5806 8.610248 TTAGACAATTTTGACCTATGAACGAA 57.390 30.769 0.00 0.00 0.00 3.85
4808 5807 7.504924 AGACAATTTTGACCTATGAACGAAA 57.495 32.000 0.00 0.00 0.00 3.46
4809 5808 7.936584 AGACAATTTTGACCTATGAACGAAAA 58.063 30.769 0.00 0.00 0.00 2.29
4810 5809 7.860872 AGACAATTTTGACCTATGAACGAAAAC 59.139 33.333 0.00 0.00 0.00 2.43
4811 5810 7.484975 ACAATTTTGACCTATGAACGAAAACA 58.515 30.769 0.00 0.00 0.00 2.83
4812 5811 8.141268 ACAATTTTGACCTATGAACGAAAACAT 58.859 29.630 0.00 0.00 0.00 2.71
4813 5812 8.977505 CAATTTTGACCTATGAACGAAAACATT 58.022 29.630 0.00 0.00 0.00 2.71
4814 5813 9.541143 AATTTTGACCTATGAACGAAAACATTT 57.459 25.926 0.00 0.00 0.00 2.32
4815 5814 8.934507 TTTTGACCTATGAACGAAAACATTTT 57.065 26.923 0.00 0.00 0.00 1.82
4817 5816 9.453325 TTTGACCTATGAACGAAAACATTTTAC 57.547 29.630 0.00 0.00 0.00 2.01
4818 5817 8.155821 TGACCTATGAACGAAAACATTTTACA 57.844 30.769 0.00 0.00 0.00 2.41
4819 5818 8.622157 TGACCTATGAACGAAAACATTTTACAA 58.378 29.630 0.00 0.00 0.00 2.41
4820 5819 9.453325 GACCTATGAACGAAAACATTTTACAAA 57.547 29.630 0.00 0.00 0.00 2.83
4821 5820 9.804758 ACCTATGAACGAAAACATTTTACAAAA 57.195 25.926 0.00 0.00 0.00 2.44
4856 5855 2.453983 AAAATGCACCCAATTGACCG 57.546 45.000 7.12 0.00 0.00 4.79
4857 5856 1.337118 AAATGCACCCAATTGACCGT 58.663 45.000 7.12 0.00 0.00 4.83
4858 5857 1.337118 AATGCACCCAATTGACCGTT 58.663 45.000 7.12 0.00 0.00 4.44
4859 5858 1.337118 ATGCACCCAATTGACCGTTT 58.663 45.000 7.12 0.00 0.00 3.60
4860 5859 1.115467 TGCACCCAATTGACCGTTTT 58.885 45.000 7.12 0.00 0.00 2.43
4861 5860 1.202463 TGCACCCAATTGACCGTTTTG 60.202 47.619 7.12 0.00 0.00 2.44
4862 5861 1.067821 GCACCCAATTGACCGTTTTGA 59.932 47.619 7.12 0.00 0.00 2.69
4863 5862 2.862140 GCACCCAATTGACCGTTTTGAG 60.862 50.000 7.12 0.00 0.00 3.02
4864 5863 2.360801 CACCCAATTGACCGTTTTGAGT 59.639 45.455 7.12 0.00 0.00 3.41
4865 5864 2.360801 ACCCAATTGACCGTTTTGAGTG 59.639 45.455 7.12 0.00 0.00 3.51
4866 5865 2.288152 CCCAATTGACCGTTTTGAGTGG 60.288 50.000 7.12 0.00 0.00 4.00
4867 5866 2.360801 CCAATTGACCGTTTTGAGTGGT 59.639 45.455 7.12 0.00 39.12 4.16
4868 5867 3.371168 CAATTGACCGTTTTGAGTGGTG 58.629 45.455 0.00 0.00 35.75 4.17
4869 5868 2.404923 TTGACCGTTTTGAGTGGTGA 57.595 45.000 0.00 0.00 35.75 4.02
4870 5869 1.658994 TGACCGTTTTGAGTGGTGAC 58.341 50.000 0.00 0.00 35.75 3.67
4871 5870 0.942252 GACCGTTTTGAGTGGTGACC 59.058 55.000 0.00 0.00 35.75 4.02
4872 5871 0.812412 ACCGTTTTGAGTGGTGACCG 60.812 55.000 0.00 0.00 33.91 4.79
4873 5872 0.531090 CCGTTTTGAGTGGTGACCGA 60.531 55.000 0.00 0.00 0.00 4.69
4874 5873 0.580104 CGTTTTGAGTGGTGACCGAC 59.420 55.000 0.00 0.00 0.00 4.79
4875 5874 1.658994 GTTTTGAGTGGTGACCGACA 58.341 50.000 0.00 0.00 0.00 4.35
4883 5882 3.103911 GTGACCGACACGAAGGCG 61.104 66.667 0.94 0.94 39.78 5.52
4889 5888 2.742372 GACACGAAGGCGCCACAT 60.742 61.111 31.54 14.90 42.48 3.21
4890 5889 2.281484 ACACGAAGGCGCCACATT 60.281 55.556 31.54 15.15 42.48 2.71
4891 5890 2.240612 GACACGAAGGCGCCACATTC 62.241 60.000 31.54 22.18 42.48 2.67
4892 5891 2.034879 CACGAAGGCGCCACATTCT 61.035 57.895 31.54 10.64 42.48 2.40
4893 5892 0.739462 CACGAAGGCGCCACATTCTA 60.739 55.000 31.54 0.00 42.48 2.10
4894 5893 0.739813 ACGAAGGCGCCACATTCTAC 60.740 55.000 31.54 8.98 42.48 2.59
4895 5894 1.752501 CGAAGGCGCCACATTCTACG 61.753 60.000 31.54 16.72 0.00 3.51
4896 5895 1.429148 GAAGGCGCCACATTCTACGG 61.429 60.000 31.54 0.00 0.00 4.02
4897 5896 2.125269 GGCGCCACATTCTACGGT 60.125 61.111 24.80 0.00 0.00 4.83
4898 5897 2.461110 GGCGCCACATTCTACGGTG 61.461 63.158 24.80 0.00 34.82 4.94
4899 5898 3.089784 CGCCACATTCTACGGTGC 58.910 61.111 0.00 0.00 33.72 5.01
4900 5899 1.739929 CGCCACATTCTACGGTGCA 60.740 57.895 0.00 0.00 33.72 4.57
4901 5900 1.695893 CGCCACATTCTACGGTGCAG 61.696 60.000 0.00 0.00 33.72 4.41
4902 5901 1.982073 GCCACATTCTACGGTGCAGC 61.982 60.000 5.64 5.64 33.72 5.25
4903 5902 1.695893 CCACATTCTACGGTGCAGCG 61.696 60.000 34.46 34.46 33.72 5.18
4904 5903 2.100631 ACATTCTACGGTGCAGCGC 61.101 57.895 35.78 0.00 0.00 5.92
4905 5904 2.511600 ATTCTACGGTGCAGCGCC 60.512 61.111 35.78 15.72 0.00 6.53
4906 5905 3.019003 ATTCTACGGTGCAGCGCCT 62.019 57.895 35.78 21.27 0.00 5.52
4907 5906 1.672854 ATTCTACGGTGCAGCGCCTA 61.673 55.000 35.78 21.25 0.00 3.93
4908 5907 2.278857 CTACGGTGCAGCGCCTAG 60.279 66.667 35.78 25.87 0.00 3.02
4923 5922 1.448985 CCTAGCTTTTAGGCGTTGCA 58.551 50.000 0.00 0.00 37.29 4.08
4924 5923 1.130561 CCTAGCTTTTAGGCGTTGCAC 59.869 52.381 0.00 0.00 37.29 4.57
4925 5924 0.793861 TAGCTTTTAGGCGTTGCACG 59.206 50.000 0.00 4.61 45.88 5.34
4926 5925 1.164041 AGCTTTTAGGCGTTGCACGT 61.164 50.000 9.76 0.00 44.73 4.49
4932 5931 2.661866 GGCGTTGCACGTCTGTCT 60.662 61.111 9.76 0.00 43.82 3.41
4933 5932 1.372499 GGCGTTGCACGTCTGTCTA 60.372 57.895 9.76 0.00 43.82 2.59
4934 5933 1.344942 GGCGTTGCACGTCTGTCTAG 61.345 60.000 9.76 0.00 43.82 2.43
4935 5934 1.945776 GCGTTGCACGTCTGTCTAGC 61.946 60.000 9.76 0.00 44.73 3.42
4936 5935 1.665544 CGTTGCACGTCTGTCTAGCG 61.666 60.000 0.00 0.00 36.74 4.26
4937 5936 0.663568 GTTGCACGTCTGTCTAGCGT 60.664 55.000 0.00 0.00 37.22 5.07
4938 5937 0.663269 TTGCACGTCTGTCTAGCGTG 60.663 55.000 13.44 13.44 46.91 5.34
4939 5938 1.801913 GCACGTCTGTCTAGCGTGG 60.802 63.158 17.64 4.35 45.65 4.94
4940 5939 1.801913 CACGTCTGTCTAGCGTGGC 60.802 63.158 10.79 0.00 43.81 5.01
4941 5940 2.265904 ACGTCTGTCTAGCGTGGCA 61.266 57.895 0.00 0.00 36.07 4.92
4942 5941 1.801913 CGTCTGTCTAGCGTGGCAC 60.802 63.158 7.79 7.79 0.00 5.01
4943 5942 1.587054 GTCTGTCTAGCGTGGCACT 59.413 57.895 16.72 0.00 0.00 4.40
4944 5943 0.456995 GTCTGTCTAGCGTGGCACTC 60.457 60.000 16.72 7.96 0.00 3.51
4945 5944 1.153745 CTGTCTAGCGTGGCACTCC 60.154 63.158 16.72 6.56 0.00 3.85
4946 5945 2.184579 GTCTAGCGTGGCACTCCC 59.815 66.667 16.72 3.92 0.00 4.30
4947 5946 3.449227 TCTAGCGTGGCACTCCCG 61.449 66.667 16.72 3.18 35.87 5.14
4948 5947 4.514577 CTAGCGTGGCACTCCCGG 62.515 72.222 16.72 0.00 35.87 5.73
4956 5955 4.459089 GCACTCCCGGCCTCACTC 62.459 72.222 0.00 0.00 0.00 3.51
4957 5956 4.135153 CACTCCCGGCCTCACTCG 62.135 72.222 0.00 0.00 0.00 4.18
4958 5957 4.680537 ACTCCCGGCCTCACTCGT 62.681 66.667 0.00 0.00 0.00 4.18
4959 5958 4.135153 CTCCCGGCCTCACTCGTG 62.135 72.222 0.00 0.00 0.00 4.35
4962 5961 4.003788 CCGGCCTCACTCGTGGTT 62.004 66.667 0.00 0.00 0.00 3.67
4963 5962 2.738521 CGGCCTCACTCGTGGTTG 60.739 66.667 0.00 0.00 0.00 3.77
4964 5963 2.426023 GGCCTCACTCGTGGTTGT 59.574 61.111 0.00 0.00 0.00 3.32
4965 5964 1.961277 GGCCTCACTCGTGGTTGTG 60.961 63.158 0.00 0.00 35.68 3.33
4966 5965 2.607892 GCCTCACTCGTGGTTGTGC 61.608 63.158 0.00 0.00 34.49 4.57
4967 5966 1.227527 CCTCACTCGTGGTTGTGCA 60.228 57.895 0.00 0.00 34.49 4.57
4968 5967 1.224069 CCTCACTCGTGGTTGTGCAG 61.224 60.000 0.00 0.00 34.49 4.41
4969 5968 1.835483 CTCACTCGTGGTTGTGCAGC 61.835 60.000 0.00 0.00 34.49 5.25
4970 5969 2.967076 ACTCGTGGTTGTGCAGCG 60.967 61.111 0.00 0.00 0.00 5.18
4971 5970 4.374702 CTCGTGGTTGTGCAGCGC 62.375 66.667 0.00 0.00 0.00 5.92
4974 5973 2.668212 GTGGTTGTGCAGCGCCTA 60.668 61.111 2.29 0.00 0.00 3.93
4975 5974 2.358615 TGGTTGTGCAGCGCCTAG 60.359 61.111 2.29 0.00 0.00 3.02
4985 5984 4.116878 GCGCCTAGCTGAAAGGAG 57.883 61.111 5.13 2.79 44.04 3.69
4986 5985 1.219393 GCGCCTAGCTGAAAGGAGT 59.781 57.895 5.13 0.00 44.04 3.85
4987 5986 0.391793 GCGCCTAGCTGAAAGGAGTT 60.392 55.000 5.13 0.00 44.04 3.01
4988 5987 1.363744 CGCCTAGCTGAAAGGAGTTG 58.636 55.000 5.13 0.00 36.08 3.16
4989 5988 1.338200 CGCCTAGCTGAAAGGAGTTGT 60.338 52.381 5.13 0.00 36.08 3.32
4990 5989 2.094182 CGCCTAGCTGAAAGGAGTTGTA 60.094 50.000 5.13 0.00 36.08 2.41
4991 5990 3.263261 GCCTAGCTGAAAGGAGTTGTAC 58.737 50.000 5.13 0.00 36.08 2.90
4992 5991 3.306780 GCCTAGCTGAAAGGAGTTGTACA 60.307 47.826 5.13 0.00 36.08 2.90
4993 5992 4.499183 CCTAGCTGAAAGGAGTTGTACAG 58.501 47.826 0.00 0.00 36.08 2.74
4994 5993 4.021016 CCTAGCTGAAAGGAGTTGTACAGT 60.021 45.833 0.00 0.00 36.08 3.55
4995 5994 3.733337 AGCTGAAAGGAGTTGTACAGTG 58.267 45.455 0.00 0.00 0.00 3.66
4996 5995 3.134804 AGCTGAAAGGAGTTGTACAGTGT 59.865 43.478 0.00 0.00 0.00 3.55
4997 5996 4.344102 AGCTGAAAGGAGTTGTACAGTGTA 59.656 41.667 0.00 0.00 0.00 2.90
4998 5997 4.686554 GCTGAAAGGAGTTGTACAGTGTAG 59.313 45.833 2.39 0.00 0.00 2.74
4999 5998 5.739358 GCTGAAAGGAGTTGTACAGTGTAGT 60.739 44.000 2.39 0.00 0.00 2.73
5000 5999 5.597806 TGAAAGGAGTTGTACAGTGTAGTG 58.402 41.667 2.39 0.00 0.00 2.74
5001 6000 3.662247 AGGAGTTGTACAGTGTAGTGC 57.338 47.619 2.39 0.00 0.00 4.40
5002 6001 2.963101 AGGAGTTGTACAGTGTAGTGCA 59.037 45.455 2.39 0.00 32.18 4.57
5003 6002 3.386726 AGGAGTTGTACAGTGTAGTGCAA 59.613 43.478 2.39 1.99 40.89 4.08
5006 6005 1.493772 TGTACAGTGTAGTGCAACGC 58.506 50.000 2.39 0.00 45.86 4.84
5007 6006 0.788391 GTACAGTGTAGTGCAACGCC 59.212 55.000 2.39 0.00 45.86 5.68
5008 6007 0.677288 TACAGTGTAGTGCAACGCCT 59.323 50.000 0.00 0.00 45.86 5.52
5009 6008 0.677288 ACAGTGTAGTGCAACGCCTA 59.323 50.000 0.00 0.00 45.86 3.93
5010 6009 1.336887 ACAGTGTAGTGCAACGCCTAG 60.337 52.381 0.00 0.00 45.86 3.02
5011 6010 0.389948 AGTGTAGTGCAACGCCTAGC 60.390 55.000 0.00 0.00 45.86 3.42
5012 6011 0.389948 GTGTAGTGCAACGCCTAGCT 60.390 55.000 0.00 0.00 45.86 3.32
5013 6012 0.389817 TGTAGTGCAACGCCTAGCTG 60.390 55.000 0.00 0.00 45.86 4.24
5014 6013 0.108804 GTAGTGCAACGCCTAGCTGA 60.109 55.000 0.00 0.00 45.86 4.26
5015 6014 0.606096 TAGTGCAACGCCTAGCTGAA 59.394 50.000 0.00 0.00 45.86 3.02
5016 6015 0.250295 AGTGCAACGCCTAGCTGAAA 60.250 50.000 0.00 0.00 45.86 2.69
5017 6016 0.166814 GTGCAACGCCTAGCTGAAAG 59.833 55.000 0.00 0.00 0.00 2.62
5018 6017 0.955428 TGCAACGCCTAGCTGAAAGG 60.955 55.000 0.00 0.00 37.17 3.11
5019 6018 0.673644 GCAACGCCTAGCTGAAAGGA 60.674 55.000 5.13 0.00 36.08 3.36
5020 6019 1.363744 CAACGCCTAGCTGAAAGGAG 58.636 55.000 5.13 4.23 39.58 3.69
5021 6020 2.672414 ACGCCTAGCTGAAAGGAGT 58.328 52.632 5.13 4.90 41.66 3.85
5022 6021 0.977395 ACGCCTAGCTGAAAGGAGTT 59.023 50.000 5.13 0.00 43.65 3.01
5023 6022 1.338200 ACGCCTAGCTGAAAGGAGTTG 60.338 52.381 5.13 0.00 43.65 3.16
5024 6023 1.090728 GCCTAGCTGAAAGGAGTTGC 58.909 55.000 5.13 0.00 36.08 4.17
5025 6024 1.611673 GCCTAGCTGAAAGGAGTTGCA 60.612 52.381 5.13 0.00 36.08 4.08
5026 6025 2.079925 CCTAGCTGAAAGGAGTTGCAC 58.920 52.381 0.00 0.00 36.08 4.57
5027 6026 2.289945 CCTAGCTGAAAGGAGTTGCACT 60.290 50.000 0.00 0.00 36.08 4.40
5028 6027 3.055819 CCTAGCTGAAAGGAGTTGCACTA 60.056 47.826 0.00 0.00 36.08 2.74
5029 6028 3.710209 AGCTGAAAGGAGTTGCACTAT 57.290 42.857 0.00 0.00 0.00 2.12
5030 6029 3.604582 AGCTGAAAGGAGTTGCACTATC 58.395 45.455 0.00 0.00 0.00 2.08
5031 6030 3.262915 AGCTGAAAGGAGTTGCACTATCT 59.737 43.478 0.00 0.00 0.00 1.98
5032 6031 4.006319 GCTGAAAGGAGTTGCACTATCTT 58.994 43.478 0.00 0.00 0.00 2.40
5033 6032 5.046304 AGCTGAAAGGAGTTGCACTATCTTA 60.046 40.000 0.00 0.00 0.00 2.10
5034 6033 5.819901 GCTGAAAGGAGTTGCACTATCTTAT 59.180 40.000 0.00 0.00 0.00 1.73
5035 6034 6.317391 GCTGAAAGGAGTTGCACTATCTTATT 59.683 38.462 0.00 0.00 0.00 1.40
5036 6035 7.148171 GCTGAAAGGAGTTGCACTATCTTATTT 60.148 37.037 0.00 0.00 0.00 1.40
5037 6036 8.635765 TGAAAGGAGTTGCACTATCTTATTTT 57.364 30.769 0.00 0.00 0.00 1.82
5038 6037 9.733556 TGAAAGGAGTTGCACTATCTTATTTTA 57.266 29.630 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 4.568152 TCTTTACTGCTTGTGCCTTTTC 57.432 40.909 0.00 0.00 38.71 2.29
149 151 3.440415 GGCGGGAAAAAGGGCTCG 61.440 66.667 0.00 0.00 0.00 5.03
369 826 1.824224 CTCCACTGTGGCAGAGCAGA 61.824 60.000 22.02 7.74 37.47 4.26
403 860 6.921857 GTCTAGTACTCTACTCTGCTCAGTAG 59.078 46.154 13.63 13.63 45.15 2.57
547 1014 5.358298 AAGTGCAAGAGATTAAACGGAAC 57.642 39.130 0.00 0.00 0.00 3.62
548 1015 5.763204 AGAAAGTGCAAGAGATTAAACGGAA 59.237 36.000 0.00 0.00 0.00 4.30
549 1016 5.305585 AGAAAGTGCAAGAGATTAAACGGA 58.694 37.500 0.00 0.00 0.00 4.69
550 1017 5.409826 AGAGAAAGTGCAAGAGATTAAACGG 59.590 40.000 0.00 0.00 0.00 4.44
551 1018 6.473397 AGAGAAAGTGCAAGAGATTAAACG 57.527 37.500 0.00 0.00 0.00 3.60
552 1019 7.413548 GCCTAGAGAAAGTGCAAGAGATTAAAC 60.414 40.741 0.00 0.00 0.00 2.01
553 1020 6.595716 GCCTAGAGAAAGTGCAAGAGATTAAA 59.404 38.462 0.00 0.00 0.00 1.52
554 1021 6.070538 AGCCTAGAGAAAGTGCAAGAGATTAA 60.071 38.462 0.00 0.00 0.00 1.40
555 1022 5.423610 AGCCTAGAGAAAGTGCAAGAGATTA 59.576 40.000 0.00 0.00 0.00 1.75
556 1023 4.224818 AGCCTAGAGAAAGTGCAAGAGATT 59.775 41.667 0.00 0.00 0.00 2.40
559 1026 3.608316 AGCCTAGAGAAAGTGCAAGAG 57.392 47.619 0.00 0.00 0.00 2.85
660 1138 5.716228 ACATCACCAGATTTGCATTCCTTTA 59.284 36.000 0.00 0.00 30.20 1.85
804 1294 7.201920 GGAGCTTGTACAGTTAATGGAGATAGA 60.202 40.741 0.00 0.00 0.00 1.98
937 1446 3.935828 GCTGAGGAACCAAGAATAGTGAC 59.064 47.826 0.00 0.00 0.00 3.67
942 1451 5.013079 TCAAGAAGCTGAGGAACCAAGAATA 59.987 40.000 0.00 0.00 0.00 1.75
1007 1521 2.017623 GCAAGATGAGCAGAGCATGGT 61.018 52.381 0.00 0.00 44.02 3.55
1045 1564 4.802051 GGCTCCCGGCAGCAATGA 62.802 66.667 21.34 0.00 41.65 2.57
1146 1665 3.125829 CGTAGCAGAAGTCGGTGTAGTTA 59.874 47.826 0.00 0.00 0.00 2.24
1267 1792 1.890894 CGTCGATGGAGAAGGTGGT 59.109 57.895 0.00 0.00 0.00 4.16
1374 1902 1.977293 GCTTCTGGAGGCGGGAGATT 61.977 60.000 0.00 0.00 0.00 2.40
1419 1947 4.651867 AGCTCGCCGTAGAGGTAA 57.348 55.556 7.21 0.00 45.86 2.85
2027 2576 0.458025 GTTGGCCGAGAAGAGTACCG 60.458 60.000 0.00 0.00 0.00 4.02
2031 2580 1.004440 GCAGTTGGCCGAGAAGAGT 60.004 57.895 0.00 0.00 36.11 3.24
2091 2646 2.282180 GCCTGGTTCCGGCAGAAA 60.282 61.111 8.95 0.00 46.77 2.52
2141 2696 2.192608 CTTGGCGCCACTCTTCTTGC 62.193 60.000 32.95 0.00 0.00 4.01
2177 2741 0.770499 TGCTCCCACAAGGACAATGA 59.230 50.000 0.00 0.00 40.93 2.57
2367 3025 0.620030 TAGCAGCAGCATTCCTTCCA 59.380 50.000 3.17 0.00 45.49 3.53
2377 3035 2.417719 ACACTACAAGTTAGCAGCAGC 58.582 47.619 0.00 0.00 42.56 5.25
2585 3271 7.339466 TCATGAGTTGAGCACTACAGTATAAGA 59.661 37.037 0.00 0.00 35.01 2.10
2586 3272 7.484140 TCATGAGTTGAGCACTACAGTATAAG 58.516 38.462 0.00 0.00 35.01 1.73
2588 3274 7.032377 CTCATGAGTTGAGCACTACAGTATA 57.968 40.000 14.95 0.00 45.16 1.47
2589 3275 5.900425 CTCATGAGTTGAGCACTACAGTAT 58.100 41.667 14.95 0.00 45.16 2.12
2590 3276 5.316327 CTCATGAGTTGAGCACTACAGTA 57.684 43.478 14.95 0.00 45.16 2.74
2610 3296 7.339466 ACCATCAACAACAATAATAACCTCCTC 59.661 37.037 0.00 0.00 0.00 3.71
2611 3297 7.182060 ACCATCAACAACAATAATAACCTCCT 58.818 34.615 0.00 0.00 0.00 3.69
2612 3298 7.122055 TGACCATCAACAACAATAATAACCTCC 59.878 37.037 0.00 0.00 0.00 4.30
2810 3496 0.251354 AGACGAGGTAGAGGTGCGTA 59.749 55.000 0.00 0.00 35.09 4.42
2885 3571 3.251484 AGGTGAGTGGGATTGAGAAGAA 58.749 45.455 0.00 0.00 0.00 2.52
2887 3573 2.093235 GGAGGTGAGTGGGATTGAGAAG 60.093 54.545 0.00 0.00 0.00 2.85
2888 3574 1.909302 GGAGGTGAGTGGGATTGAGAA 59.091 52.381 0.00 0.00 0.00 2.87
2891 3577 1.971149 ATGGAGGTGAGTGGGATTGA 58.029 50.000 0.00 0.00 0.00 2.57
2892 3578 2.291153 ACAATGGAGGTGAGTGGGATTG 60.291 50.000 0.00 0.00 0.00 2.67
2893 3579 1.995542 ACAATGGAGGTGAGTGGGATT 59.004 47.619 0.00 0.00 0.00 3.01
2894 3580 1.673767 ACAATGGAGGTGAGTGGGAT 58.326 50.000 0.00 0.00 0.00 3.85
2898 3584 3.703001 AGGTAACAATGGAGGTGAGTG 57.297 47.619 0.00 0.00 41.41 3.51
2938 3630 2.404559 AGCCCCACTTCCGATTATACA 58.595 47.619 0.00 0.00 0.00 2.29
2939 3631 3.487120 AAGCCCCACTTCCGATTATAC 57.513 47.619 0.00 0.00 30.77 1.47
2955 3664 2.675348 CGTTCCTTCTGAAGATGAAGCC 59.325 50.000 18.68 3.70 39.47 4.35
2987 3696 3.850098 CTTTGGCCCCACGACAGCT 62.850 63.158 0.00 0.00 0.00 4.24
3156 3865 4.161942 ACCTCTGATTTCATGGTCTCTGAG 59.838 45.833 0.00 0.00 35.00 3.35
3190 3899 4.582973 AGTTTACGGAGGGAGTACTAGT 57.417 45.455 0.00 0.00 0.00 2.57
3191 3900 8.860780 ATATTAGTTTACGGAGGGAGTACTAG 57.139 38.462 0.00 0.00 0.00 2.57
3194 3903 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
3196 3905 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
3198 3907 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
3200 3909 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
3248 3957 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3249 3958 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3250 3959 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3251 3960 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3252 3961 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3267 3976 9.317827 ACAAGTTAGTTAATTACTCCCTCTGTA 57.682 33.333 0.00 0.00 38.33 2.74
3268 3977 8.203681 ACAAGTTAGTTAATTACTCCCTCTGT 57.796 34.615 0.00 0.00 38.33 3.41
3269 3978 9.583765 GTACAAGTTAGTTAATTACTCCCTCTG 57.416 37.037 0.00 0.00 38.33 3.35
3270 3979 9.544579 AGTACAAGTTAGTTAATTACTCCCTCT 57.455 33.333 0.00 0.00 38.33 3.69
3388 4106 6.349300 CATGTGTTTAAGTGGCTACCTATCT 58.651 40.000 0.00 0.00 0.00 1.98
3399 4117 9.436957 AATAAGACTAGTCCATGTGTTTAAGTG 57.563 33.333 19.38 0.00 0.00 3.16
3560 4286 5.966742 TTCATCATCTCCACCTCGTATAG 57.033 43.478 0.00 0.00 0.00 1.31
3625 4369 7.929785 TCTTATATTTTGGGACGGATGAAGTAC 59.070 37.037 0.00 0.00 0.00 2.73
3630 4388 5.305585 GCTCTTATATTTTGGGACGGATGA 58.694 41.667 0.00 0.00 0.00 2.92
3632 4390 4.202326 ACGCTCTTATATTTTGGGACGGAT 60.202 41.667 0.00 0.00 0.00 4.18
3635 4393 5.479716 AAACGCTCTTATATTTTGGGACG 57.520 39.130 0.00 0.00 0.00 4.79
3662 4420 8.340618 AGACCGTTTTTGATACTACACTAGTA 57.659 34.615 0.00 0.00 44.64 1.82
3674 4432 9.284968 CTCCCATAATATAAGACCGTTTTTGAT 57.715 33.333 0.00 0.00 0.00 2.57
3676 4434 8.671384 TCTCCCATAATATAAGACCGTTTTTG 57.329 34.615 0.00 0.00 0.00 2.44
3682 4440 5.361285 CCCTCTCTCCCATAATATAAGACCG 59.639 48.000 0.00 0.00 0.00 4.79
3684 4442 7.186268 ACTCCCTCTCTCCCATAATATAAGAC 58.814 42.308 0.00 0.00 0.00 3.01
3719 4477 9.603189 ATTACAACAAGCCCTACTATATACTCT 57.397 33.333 0.00 0.00 0.00 3.24
3720 4478 9.857957 GATTACAACAAGCCCTACTATATACTC 57.142 37.037 0.00 0.00 0.00 2.59
3721 4479 8.521176 CGATTACAACAAGCCCTACTATATACT 58.479 37.037 0.00 0.00 0.00 2.12
3722 4480 7.758528 CCGATTACAACAAGCCCTACTATATAC 59.241 40.741 0.00 0.00 0.00 1.47
3723 4481 7.670979 TCCGATTACAACAAGCCCTACTATATA 59.329 37.037 0.00 0.00 0.00 0.86
3724 4482 6.495872 TCCGATTACAACAAGCCCTACTATAT 59.504 38.462 0.00 0.00 0.00 0.86
3725 4483 5.834742 TCCGATTACAACAAGCCCTACTATA 59.165 40.000 0.00 0.00 0.00 1.31
3733 4491 4.866921 ACTTTTTCCGATTACAACAAGCC 58.133 39.130 0.00 0.00 0.00 4.35
3736 4494 6.531948 CCACAAACTTTTTCCGATTACAACAA 59.468 34.615 0.00 0.00 0.00 2.83
3737 4495 6.037098 CCACAAACTTTTTCCGATTACAACA 58.963 36.000 0.00 0.00 0.00 3.33
3801 4565 0.879765 CCAAGTTGCTCCTCTTGCTG 59.120 55.000 0.00 0.00 39.47 4.41
3842 4606 2.418910 ATGGAGTCGTCGGAGCAGG 61.419 63.158 0.00 0.00 0.00 4.85
4026 4793 2.108157 GTGGGTCAGTCGTGTGCA 59.892 61.111 0.00 0.00 0.00 4.57
4088 4876 5.728898 GCACATTTCTTTGGAGATCATCGTC 60.729 44.000 0.00 0.00 0.00 4.20
4090 4878 4.095334 TGCACATTTCTTTGGAGATCATCG 59.905 41.667 0.00 0.00 0.00 3.84
4256 5171 2.870411 GCGTCTTGGTGAAAACTGTAGT 59.130 45.455 0.00 0.00 0.00 2.73
4257 5172 2.223377 GGCGTCTTGGTGAAAACTGTAG 59.777 50.000 0.00 0.00 0.00 2.74
4258 5173 2.215196 GGCGTCTTGGTGAAAACTGTA 58.785 47.619 0.00 0.00 0.00 2.74
4259 5174 1.021968 GGCGTCTTGGTGAAAACTGT 58.978 50.000 0.00 0.00 0.00 3.55
4260 5175 1.021202 TGGCGTCTTGGTGAAAACTG 58.979 50.000 0.00 0.00 0.00 3.16
4261 5176 1.021968 GTGGCGTCTTGGTGAAAACT 58.978 50.000 0.00 0.00 0.00 2.66
4262 5177 1.021968 AGTGGCGTCTTGGTGAAAAC 58.978 50.000 0.00 0.00 0.00 2.43
4263 5178 1.021202 CAGTGGCGTCTTGGTGAAAA 58.979 50.000 0.00 0.00 0.00 2.29
4325 5243 6.279513 TGGTTTTATGGGAGTGCATTAAAG 57.720 37.500 0.00 0.00 0.00 1.85
4464 5463 5.188751 GGATTAGAGGGAGTAGCAGCATTAT 59.811 44.000 0.00 0.00 0.00 1.28
4470 5469 5.559148 ATTTGGATTAGAGGGAGTAGCAG 57.441 43.478 0.00 0.00 0.00 4.24
4528 5527 3.924918 TTGGCGCTGCTTTTGTATAAA 57.075 38.095 7.64 0.00 0.00 1.40
4626 5625 2.641815 AGGTGATCCAAAGACTCTGCTT 59.358 45.455 0.00 0.00 35.89 3.91
4627 5626 2.027377 CAGGTGATCCAAAGACTCTGCT 60.027 50.000 0.00 0.00 35.89 4.24
4628 5627 2.289945 ACAGGTGATCCAAAGACTCTGC 60.290 50.000 0.00 0.00 35.89 4.26
4629 5628 3.692257 ACAGGTGATCCAAAGACTCTG 57.308 47.619 0.00 0.00 35.89 3.35
4685 5684 3.540014 CTCAACGAGCGAGCGCAG 61.540 66.667 17.68 12.53 44.88 5.18
4706 5705 1.478105 ACATGAGCTATGCGTGAGACA 59.522 47.619 0.00 0.00 40.59 3.41
4707 5706 2.123342 GACATGAGCTATGCGTGAGAC 58.877 52.381 0.00 0.00 40.59 3.36
4712 5711 0.528466 CGTGGACATGAGCTATGCGT 60.528 55.000 0.00 0.00 40.59 5.24
4716 5715 3.002791 CAACAACGTGGACATGAGCTAT 58.997 45.455 0.00 0.00 0.00 2.97
4730 5729 0.884704 ACCTGGCACTAGCAACAACG 60.885 55.000 0.00 0.00 44.61 4.10
4770 5769 7.542130 GTCAAAATTGTCTAATTTGCCTACCAG 59.458 37.037 0.00 0.00 43.74 4.00
4775 5774 6.670695 AGGTCAAAATTGTCTAATTTGCCT 57.329 33.333 0.00 0.00 43.74 4.75
4776 5775 8.250332 TCATAGGTCAAAATTGTCTAATTTGCC 58.750 33.333 0.00 0.00 43.74 4.52
4777 5776 9.638239 TTCATAGGTCAAAATTGTCTAATTTGC 57.362 29.630 0.00 0.00 43.74 3.68
4779 5778 9.840427 CGTTCATAGGTCAAAATTGTCTAATTT 57.160 29.630 0.00 0.00 45.82 1.82
4780 5779 9.226606 TCGTTCATAGGTCAAAATTGTCTAATT 57.773 29.630 0.00 0.00 38.11 1.40
4781 5780 8.786826 TCGTTCATAGGTCAAAATTGTCTAAT 57.213 30.769 0.00 0.00 0.00 1.73
4782 5781 8.610248 TTCGTTCATAGGTCAAAATTGTCTAA 57.390 30.769 0.00 0.00 0.00 2.10
4783 5782 8.610248 TTTCGTTCATAGGTCAAAATTGTCTA 57.390 30.769 0.00 0.00 0.00 2.59
4784 5783 7.504924 TTTCGTTCATAGGTCAAAATTGTCT 57.495 32.000 0.00 0.00 0.00 3.41
4785 5784 7.646130 TGTTTTCGTTCATAGGTCAAAATTGTC 59.354 33.333 0.00 0.00 0.00 3.18
4786 5785 7.484975 TGTTTTCGTTCATAGGTCAAAATTGT 58.515 30.769 0.00 0.00 0.00 2.71
4787 5786 7.922505 TGTTTTCGTTCATAGGTCAAAATTG 57.077 32.000 0.00 0.00 0.00 2.32
4788 5787 9.541143 AAATGTTTTCGTTCATAGGTCAAAATT 57.459 25.926 0.00 0.00 0.00 1.82
4789 5788 9.541143 AAAATGTTTTCGTTCATAGGTCAAAAT 57.459 25.926 0.00 0.00 0.00 1.82
4790 5789 8.934507 AAAATGTTTTCGTTCATAGGTCAAAA 57.065 26.923 0.00 0.00 0.00 2.44
4791 5790 9.453325 GTAAAATGTTTTCGTTCATAGGTCAAA 57.547 29.630 0.00 0.00 0.00 2.69
4792 5791 8.622157 TGTAAAATGTTTTCGTTCATAGGTCAA 58.378 29.630 0.00 0.00 0.00 3.18
4793 5792 8.155821 TGTAAAATGTTTTCGTTCATAGGTCA 57.844 30.769 0.00 0.00 0.00 4.02
4794 5793 9.453325 TTTGTAAAATGTTTTCGTTCATAGGTC 57.547 29.630 0.00 0.00 0.00 3.85
4795 5794 9.804758 TTTTGTAAAATGTTTTCGTTCATAGGT 57.195 25.926 0.00 0.00 0.00 3.08
4836 5835 2.103941 ACGGTCAATTGGGTGCATTTTT 59.896 40.909 5.42 0.00 0.00 1.94
4837 5836 1.691434 ACGGTCAATTGGGTGCATTTT 59.309 42.857 5.42 0.00 0.00 1.82
4838 5837 1.337118 ACGGTCAATTGGGTGCATTT 58.663 45.000 5.42 0.00 0.00 2.32
4839 5838 1.337118 AACGGTCAATTGGGTGCATT 58.663 45.000 5.42 0.00 0.00 3.56
4840 5839 1.337118 AAACGGTCAATTGGGTGCAT 58.663 45.000 5.42 0.00 0.00 3.96
4841 5840 1.115467 AAAACGGTCAATTGGGTGCA 58.885 45.000 5.42 0.00 0.00 4.57
4842 5841 1.067821 TCAAAACGGTCAATTGGGTGC 59.932 47.619 5.42 0.00 0.00 5.01
4843 5842 2.360801 ACTCAAAACGGTCAATTGGGTG 59.639 45.455 5.42 0.00 36.45 4.61
4844 5843 2.360801 CACTCAAAACGGTCAATTGGGT 59.639 45.455 5.42 0.00 38.25 4.51
4845 5844 2.288152 CCACTCAAAACGGTCAATTGGG 60.288 50.000 5.42 0.00 0.00 4.12
4846 5845 2.360801 ACCACTCAAAACGGTCAATTGG 59.639 45.455 5.42 0.00 0.00 3.16
4847 5846 3.066064 TCACCACTCAAAACGGTCAATTG 59.934 43.478 0.00 0.00 0.00 2.32
4848 5847 3.066203 GTCACCACTCAAAACGGTCAATT 59.934 43.478 0.00 0.00 0.00 2.32
4849 5848 2.616842 GTCACCACTCAAAACGGTCAAT 59.383 45.455 0.00 0.00 0.00 2.57
4850 5849 2.011222 GTCACCACTCAAAACGGTCAA 58.989 47.619 0.00 0.00 0.00 3.18
4851 5850 1.658994 GTCACCACTCAAAACGGTCA 58.341 50.000 0.00 0.00 0.00 4.02
4852 5851 0.942252 GGTCACCACTCAAAACGGTC 59.058 55.000 0.00 0.00 0.00 4.79
4853 5852 0.812412 CGGTCACCACTCAAAACGGT 60.812 55.000 0.00 0.00 0.00 4.83
4854 5853 0.531090 TCGGTCACCACTCAAAACGG 60.531 55.000 0.00 0.00 0.00 4.44
4855 5854 0.580104 GTCGGTCACCACTCAAAACG 59.420 55.000 0.00 0.00 0.00 3.60
4856 5855 1.329599 GTGTCGGTCACCACTCAAAAC 59.670 52.381 0.00 0.00 40.84 2.43
4857 5856 1.658994 GTGTCGGTCACCACTCAAAA 58.341 50.000 0.00 0.00 40.84 2.44
4858 5857 0.528901 CGTGTCGGTCACCACTCAAA 60.529 55.000 0.00 0.00 43.51 2.69
4859 5858 1.066752 CGTGTCGGTCACCACTCAA 59.933 57.895 0.00 0.00 43.51 3.02
4860 5859 1.385756 TTCGTGTCGGTCACCACTCA 61.386 55.000 0.00 0.00 43.51 3.41
4861 5860 0.663568 CTTCGTGTCGGTCACCACTC 60.664 60.000 0.00 0.00 43.51 3.51
4862 5861 1.362717 CTTCGTGTCGGTCACCACT 59.637 57.895 0.00 0.00 43.51 4.00
4863 5862 1.663702 CCTTCGTGTCGGTCACCAC 60.664 63.158 0.00 0.00 43.51 4.16
4864 5863 2.732016 CCTTCGTGTCGGTCACCA 59.268 61.111 0.00 0.00 43.51 4.17
4865 5864 2.737376 GCCTTCGTGTCGGTCACC 60.737 66.667 0.00 0.00 43.51 4.02
4866 5865 3.103911 CGCCTTCGTGTCGGTCAC 61.104 66.667 0.00 0.00 43.03 3.67
4872 5871 2.240612 GAATGTGGCGCCTTCGTGTC 62.241 60.000 29.70 13.36 38.14 3.67
4873 5872 2.281484 AATGTGGCGCCTTCGTGT 60.281 55.556 29.70 4.95 38.14 4.49
4874 5873 0.739462 TAGAATGTGGCGCCTTCGTG 60.739 55.000 29.70 0.00 38.14 4.35
4875 5874 0.739813 GTAGAATGTGGCGCCTTCGT 60.740 55.000 29.70 18.65 38.14 3.85
4876 5875 1.752501 CGTAGAATGTGGCGCCTTCG 61.753 60.000 29.70 11.93 39.07 3.79
4877 5876 1.429148 CCGTAGAATGTGGCGCCTTC 61.429 60.000 29.70 22.50 0.00 3.46
4878 5877 1.449601 CCGTAGAATGTGGCGCCTT 60.450 57.895 29.70 14.38 0.00 4.35
4879 5878 2.186903 CCGTAGAATGTGGCGCCT 59.813 61.111 29.70 6.86 0.00 5.52
4880 5879 2.125269 ACCGTAGAATGTGGCGCC 60.125 61.111 22.73 22.73 0.00 6.53
4881 5880 3.089784 CACCGTAGAATGTGGCGC 58.910 61.111 0.00 0.00 0.00 6.53
4882 5881 1.695893 CTGCACCGTAGAATGTGGCG 61.696 60.000 0.00 0.00 33.08 5.69
4883 5882 1.982073 GCTGCACCGTAGAATGTGGC 61.982 60.000 0.00 0.00 33.08 5.01
4884 5883 1.695893 CGCTGCACCGTAGAATGTGG 61.696 60.000 0.00 0.00 33.08 4.17
4885 5884 1.709760 CGCTGCACCGTAGAATGTG 59.290 57.895 0.00 0.00 35.58 3.21
4886 5885 2.100631 GCGCTGCACCGTAGAATGT 61.101 57.895 0.00 0.00 0.00 2.71
4887 5886 2.703409 GCGCTGCACCGTAGAATG 59.297 61.111 0.00 0.00 0.00 2.67
4888 5887 1.672854 TAGGCGCTGCACCGTAGAAT 61.673 55.000 7.64 0.00 0.00 2.40
4889 5888 2.279502 CTAGGCGCTGCACCGTAGAA 62.280 60.000 7.64 0.00 0.00 2.10
4890 5889 2.752640 TAGGCGCTGCACCGTAGA 60.753 61.111 7.64 0.00 0.00 2.59
4891 5890 2.278857 CTAGGCGCTGCACCGTAG 60.279 66.667 7.64 2.34 0.00 3.51
4892 5891 4.508128 GCTAGGCGCTGCACCGTA 62.508 66.667 7.64 0.00 35.14 4.02
4904 5903 1.130561 GTGCAACGCCTAAAAGCTAGG 59.869 52.381 0.00 0.00 37.75 3.02
4905 5904 2.527442 GTGCAACGCCTAAAAGCTAG 57.473 50.000 0.00 0.00 0.00 3.42
4918 5917 0.663568 ACGCTAGACAGACGTGCAAC 60.664 55.000 0.00 0.00 38.85 4.17
4919 5918 1.658114 ACGCTAGACAGACGTGCAA 59.342 52.632 0.00 0.00 38.85 4.08
4920 5919 3.351450 ACGCTAGACAGACGTGCA 58.649 55.556 0.00 0.00 38.85 4.57
4923 5922 2.265904 TGCCACGCTAGACAGACGT 61.266 57.895 0.00 0.00 41.45 4.34
4924 5923 1.801913 GTGCCACGCTAGACAGACG 60.802 63.158 0.00 0.00 0.00 4.18
4925 5924 0.456995 GAGTGCCACGCTAGACAGAC 60.457 60.000 0.00 0.00 0.00 3.51
4926 5925 1.595993 GGAGTGCCACGCTAGACAGA 61.596 60.000 0.00 0.00 0.00 3.41
4927 5926 1.153745 GGAGTGCCACGCTAGACAG 60.154 63.158 0.00 0.00 0.00 3.51
4928 5927 2.646175 GGGAGTGCCACGCTAGACA 61.646 63.158 0.00 0.00 35.15 3.41
4929 5928 2.184579 GGGAGTGCCACGCTAGAC 59.815 66.667 0.00 0.00 35.15 2.59
4930 5929 3.449227 CGGGAGTGCCACGCTAGA 61.449 66.667 0.08 0.00 35.15 2.43
4931 5930 4.514577 CCGGGAGTGCCACGCTAG 62.515 72.222 0.08 0.00 35.15 3.42
4939 5938 4.459089 GAGTGAGGCCGGGAGTGC 62.459 72.222 2.18 0.00 0.00 4.40
4940 5939 4.135153 CGAGTGAGGCCGGGAGTG 62.135 72.222 2.18 0.00 0.00 3.51
4941 5940 4.680537 ACGAGTGAGGCCGGGAGT 62.681 66.667 2.18 0.00 0.00 3.85
4942 5941 4.135153 CACGAGTGAGGCCGGGAG 62.135 72.222 2.18 0.00 0.00 4.30
4945 5944 4.003788 AACCACGAGTGAGGCCGG 62.004 66.667 4.59 0.00 0.00 6.13
4946 5945 2.738521 CAACCACGAGTGAGGCCG 60.739 66.667 4.59 0.00 0.00 6.13
4947 5946 1.961277 CACAACCACGAGTGAGGCC 60.961 63.158 4.59 0.00 37.97 5.19
4948 5947 2.607892 GCACAACCACGAGTGAGGC 61.608 63.158 4.59 0.00 37.97 4.70
4949 5948 1.224069 CTGCACAACCACGAGTGAGG 61.224 60.000 4.59 0.00 37.97 3.86
4950 5949 1.835483 GCTGCACAACCACGAGTGAG 61.835 60.000 4.59 0.00 37.97 3.51
4951 5950 1.887242 GCTGCACAACCACGAGTGA 60.887 57.895 4.59 0.00 37.97 3.41
4952 5951 2.633657 GCTGCACAACCACGAGTG 59.366 61.111 0.00 0.00 38.74 3.51
4953 5952 2.967076 CGCTGCACAACCACGAGT 60.967 61.111 0.00 0.00 0.00 4.18
4954 5953 4.374702 GCGCTGCACAACCACGAG 62.375 66.667 0.00 0.00 0.00 4.18
4957 5956 2.668212 TAGGCGCTGCACAACCAC 60.668 61.111 7.64 0.00 0.00 4.16
4958 5957 2.358615 CTAGGCGCTGCACAACCA 60.359 61.111 7.64 0.00 0.00 3.67
4959 5958 3.804193 GCTAGGCGCTGCACAACC 61.804 66.667 7.64 0.00 35.14 3.77
4968 5967 0.391793 AACTCCTTTCAGCTAGGCGC 60.392 55.000 0.00 0.00 39.57 6.53
4969 5968 1.338200 ACAACTCCTTTCAGCTAGGCG 60.338 52.381 0.00 0.00 32.59 5.52
4970 5969 2.481289 ACAACTCCTTTCAGCTAGGC 57.519 50.000 0.00 0.00 32.59 3.93
4971 5970 4.021016 ACTGTACAACTCCTTTCAGCTAGG 60.021 45.833 0.00 0.00 0.00 3.02
4972 5971 4.926238 CACTGTACAACTCCTTTCAGCTAG 59.074 45.833 0.00 0.00 0.00 3.42
4973 5972 4.344102 ACACTGTACAACTCCTTTCAGCTA 59.656 41.667 0.00 0.00 0.00 3.32
4974 5973 3.134804 ACACTGTACAACTCCTTTCAGCT 59.865 43.478 0.00 0.00 0.00 4.24
4975 5974 3.467803 ACACTGTACAACTCCTTTCAGC 58.532 45.455 0.00 0.00 0.00 4.26
4976 5975 5.692204 CACTACACTGTACAACTCCTTTCAG 59.308 44.000 0.00 0.00 0.00 3.02
4977 5976 5.597806 CACTACACTGTACAACTCCTTTCA 58.402 41.667 0.00 0.00 0.00 2.69
4978 5977 4.448060 GCACTACACTGTACAACTCCTTTC 59.552 45.833 0.00 0.00 0.00 2.62
4979 5978 4.141801 TGCACTACACTGTACAACTCCTTT 60.142 41.667 0.00 0.00 0.00 3.11
4980 5979 3.386726 TGCACTACACTGTACAACTCCTT 59.613 43.478 0.00 0.00 0.00 3.36
4981 5980 2.963101 TGCACTACACTGTACAACTCCT 59.037 45.455 0.00 0.00 0.00 3.69
4982 5981 3.380479 TGCACTACACTGTACAACTCC 57.620 47.619 0.00 0.00 0.00 3.85
4983 5982 3.181774 CGTTGCACTACACTGTACAACTC 59.818 47.826 14.51 0.00 40.27 3.01
4984 5983 3.120792 CGTTGCACTACACTGTACAACT 58.879 45.455 14.51 0.00 40.27 3.16
4985 5984 2.348218 GCGTTGCACTACACTGTACAAC 60.348 50.000 0.00 9.57 39.51 3.32
4986 5985 1.862201 GCGTTGCACTACACTGTACAA 59.138 47.619 0.00 0.00 0.00 2.41
4987 5986 1.493772 GCGTTGCACTACACTGTACA 58.506 50.000 0.00 0.00 0.00 2.90
4988 5987 0.788391 GGCGTTGCACTACACTGTAC 59.212 55.000 0.00 0.00 0.00 2.90
4989 5988 0.677288 AGGCGTTGCACTACACTGTA 59.323 50.000 0.00 0.00 0.00 2.74
4990 5989 0.677288 TAGGCGTTGCACTACACTGT 59.323 50.000 0.00 0.00 0.00 3.55
4991 5990 1.350193 CTAGGCGTTGCACTACACTG 58.650 55.000 0.00 0.00 0.00 3.66
4992 5991 0.389948 GCTAGGCGTTGCACTACACT 60.390 55.000 7.96 0.00 0.00 3.55
4993 5992 0.389948 AGCTAGGCGTTGCACTACAC 60.390 55.000 14.88 0.00 0.00 2.90
4994 5993 0.389817 CAGCTAGGCGTTGCACTACA 60.390 55.000 14.88 0.00 0.00 2.74
4995 5994 0.108804 TCAGCTAGGCGTTGCACTAC 60.109 55.000 14.88 0.00 0.00 2.73
4996 5995 0.606096 TTCAGCTAGGCGTTGCACTA 59.394 50.000 14.88 0.00 0.00 2.74
4997 5996 0.250295 TTTCAGCTAGGCGTTGCACT 60.250 50.000 14.88 0.00 0.00 4.40
4998 5997 0.166814 CTTTCAGCTAGGCGTTGCAC 59.833 55.000 14.88 0.00 0.00 4.57
4999 5998 0.955428 CCTTTCAGCTAGGCGTTGCA 60.955 55.000 14.88 0.00 0.00 4.08
5000 5999 0.673644 TCCTTTCAGCTAGGCGTTGC 60.674 55.000 4.63 4.63 32.59 4.17
5001 6000 1.338200 ACTCCTTTCAGCTAGGCGTTG 60.338 52.381 0.00 0.00 32.59 4.10
5002 6001 0.977395 ACTCCTTTCAGCTAGGCGTT 59.023 50.000 0.00 0.00 32.59 4.84
5003 6002 0.977395 AACTCCTTTCAGCTAGGCGT 59.023 50.000 0.00 0.00 32.26 5.68
5004 6003 1.363744 CAACTCCTTTCAGCTAGGCG 58.636 55.000 0.00 0.00 32.59 5.52
5005 6004 1.090728 GCAACTCCTTTCAGCTAGGC 58.909 55.000 0.00 0.00 32.59 3.93
5006 6005 2.079925 GTGCAACTCCTTTCAGCTAGG 58.920 52.381 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.