Multiple sequence alignment - TraesCS2A01G242900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G242900 chr2A 100.000 6555 0 0 1 6555 338516458 338523012 0.000000e+00 12105.0
1 TraesCS2A01G242900 chr2A 94.444 72 3 1 3450 3521 684897688 684897758 6.950000e-20 110.0
2 TraesCS2A01G242900 chr2A 89.873 79 7 1 3348 3426 549981131 549981054 4.180000e-17 100.0
3 TraesCS2A01G242900 chr2A 100.000 35 0 0 5813 5847 772826806 772826772 1.530000e-06 65.8
4 TraesCS2A01G242900 chr7D 99.569 1393 2 1 2132 3520 379062551 379063943 0.000000e+00 2536.0
5 TraesCS2A01G242900 chr7D 99.428 1224 7 0 906 2129 379057449 379058672 0.000000e+00 2222.0
6 TraesCS2A01G242900 chr7D 98.980 980 9 1 4827 5806 379063946 379064924 0.000000e+00 1753.0
7 TraesCS2A01G242900 chr7D 95.105 715 17 4 5858 6555 379064909 379065622 0.000000e+00 1110.0
8 TraesCS2A01G242900 chr7D 88.336 643 67 7 1 636 250349643 250350284 0.000000e+00 765.0
9 TraesCS2A01G242900 chr7D 90.854 328 28 1 3521 3846 500955836 500956163 7.800000e-119 438.0
10 TraesCS2A01G242900 chr7D 90.164 244 22 2 3917 4159 500956646 500956888 3.810000e-82 316.0
11 TraesCS2A01G242900 chr7D 91.713 181 10 3 672 852 379057088 379057263 5.080000e-61 246.0
12 TraesCS2A01G242900 chr7D 78.088 251 42 11 2482 2729 565059753 565059993 5.300000e-31 147.0
13 TraesCS2A01G242900 chr7D 92.857 70 5 0 3080 3149 197305144 197305075 1.160000e-17 102.0
14 TraesCS2A01G242900 chr7D 80.357 112 20 2 2471 2580 623723555 623723666 4.210000e-12 84.2
15 TraesCS2A01G242900 chr7D 84.706 85 7 6 3342 3423 547264514 547264433 5.450000e-11 80.5
16 TraesCS2A01G242900 chr7B 92.401 1737 82 18 725 2441 374484388 374486094 0.000000e+00 2431.0
17 TraesCS2A01G242900 chr7B 94.530 914 47 2 4893 5806 374487732 374488642 0.000000e+00 1408.0
18 TraesCS2A01G242900 chr7B 89.062 640 59 9 1 633 150527486 150526851 0.000000e+00 784.0
19 TraesCS2A01G242900 chr7B 89.921 635 19 10 2467 3077 374486793 374487406 0.000000e+00 776.0
20 TraesCS2A01G242900 chr7B 89.549 421 38 4 6136 6554 374489273 374489689 4.500000e-146 529.0
21 TraesCS2A01G242900 chr7B 90.407 344 12 5 3139 3464 374487391 374487731 3.630000e-117 433.0
22 TraesCS2A01G242900 chr7B 84.429 289 19 9 5861 6133 374488630 374488908 1.810000e-65 261.0
23 TraesCS2A01G242900 chr7B 77.273 242 46 6 2490 2729 40294205 40293971 4.120000e-27 134.0
24 TraesCS2A01G242900 chr7B 96.825 63 2 0 3459 3521 417611286 417611224 8.990000e-19 106.0
25 TraesCS2A01G242900 chr7B 84.507 71 5 5 6390 6456 662308464 662308532 1.530000e-06 65.8
26 TraesCS2A01G242900 chr7B 100.000 29 0 0 6408 6436 643117242 643117214 3.000000e-03 54.7
27 TraesCS2A01G242900 chr3B 86.910 1314 139 26 3525 4825 826228890 826230183 0.000000e+00 1443.0
28 TraesCS2A01G242900 chr3B 83.736 910 109 30 3519 4403 134027884 134028779 0.000000e+00 824.0
29 TraesCS2A01G242900 chr3B 89.789 617 52 7 1 607 132078660 132079275 0.000000e+00 780.0
30 TraesCS2A01G242900 chr3B 93.197 441 28 1 4385 4825 134028796 134029234 0.000000e+00 647.0
31 TraesCS2A01G242900 chr3B 87.179 117 15 0 3343 3459 83913105 83913221 4.120000e-27 134.0
32 TraesCS2A01G242900 chr3B 98.333 60 1 0 3462 3521 545185560 545185501 8.990000e-19 106.0
33 TraesCS2A01G242900 chr7A 91.045 1005 59 14 2095 3077 427551626 427552621 0.000000e+00 1328.0
34 TraesCS2A01G242900 chr7A 91.557 912 59 6 4896 5806 427552968 427553862 0.000000e+00 1242.0
35 TraesCS2A01G242900 chr7A 87.996 1083 46 25 697 1748 427550562 427551591 0.000000e+00 1203.0
36 TraesCS2A01G242900 chr7A 92.722 316 23 0 4510 4825 48043252 48042937 2.150000e-124 457.0
37 TraesCS2A01G242900 chr7A 88.451 381 21 12 5858 6217 427553847 427554225 7.800000e-119 438.0
38 TraesCS2A01G242900 chr7A 92.780 277 13 1 4211 4480 48043522 48043246 1.710000e-105 394.0
39 TraesCS2A01G242900 chr7A 89.922 129 13 0 3077 3205 427552742 427552870 4.070000e-37 167.0
40 TraesCS2A01G242900 chr7A 89.815 108 8 3 681 788 427546915 427547019 1.150000e-27 135.0
41 TraesCS2A01G242900 chr7A 87.952 83 5 4 3442 3521 375886632 375886552 7.000000e-15 93.5
42 TraesCS2A01G242900 chr4A 97.078 616 15 2 4211 4826 148136080 148135468 0.000000e+00 1035.0
43 TraesCS2A01G242900 chr4A 94.340 583 31 1 3631 4211 148136693 148136111 0.000000e+00 893.0
44 TraesCS2A01G242900 chr4A 95.385 65 2 1 3077 3140 222305874 222305938 1.160000e-17 102.0
45 TraesCS2A01G242900 chr4A 84.615 91 14 0 1748 1838 407589680 407589770 2.520000e-14 91.6
46 TraesCS2A01G242900 chr1D 90.337 652 52 7 1 642 16204897 16205547 0.000000e+00 845.0
47 TraesCS2A01G242900 chr1D 89.886 613 51 8 1 605 423280450 423281059 0.000000e+00 778.0
48 TraesCS2A01G242900 chr1D 77.729 229 37 13 2486 2711 270227775 270227558 1.920000e-25 128.0
49 TraesCS2A01G242900 chr1D 86.275 102 12 2 3363 3464 12959782 12959881 6.950000e-20 110.0
50 TraesCS2A01G242900 chr5D 89.375 640 58 7 1 636 188387340 188387973 0.000000e+00 797.0
51 TraesCS2A01G242900 chr5D 90.123 243 23 1 3917 4159 239493321 239493562 1.370000e-81 315.0
52 TraesCS2A01G242900 chr5D 91.358 81 5 2 4826 4906 60253327 60253405 6.950000e-20 110.0
53 TraesCS2A01G242900 chrUn 88.889 648 64 6 1 640 29821244 29821891 0.000000e+00 791.0
54 TraesCS2A01G242900 chr1B 88.906 649 60 9 1 642 530956192 530955549 0.000000e+00 789.0
55 TraesCS2A01G242900 chr1B 91.640 311 25 1 4515 4825 592207148 592207457 4.700000e-116 429.0
56 TraesCS2A01G242900 chr1B 90.385 208 16 2 4302 4508 592180108 592180312 3.010000e-68 270.0
57 TraesCS2A01G242900 chr1B 93.056 72 4 1 4826 4897 229263202 229263272 3.230000e-18 104.0
58 TraesCS2A01G242900 chr1B 80.220 91 18 0 1748 1838 475287373 475287463 1.180000e-07 69.4
59 TraesCS2A01G242900 chr1B 82.667 75 10 3 1805 1877 681718691 681718764 5.490000e-06 63.9
60 TraesCS2A01G242900 chr6D 88.650 652 60 11 1 642 411995252 411994605 0.000000e+00 782.0
61 TraesCS2A01G242900 chr6D 87.832 641 73 4 3521 4159 351259237 351258600 0.000000e+00 747.0
62 TraesCS2A01G242900 chr6D 93.636 220 14 0 4607 4826 351258602 351258383 4.900000e-86 329.0
63 TraesCS2A01G242900 chr3D 87.885 454 41 10 3521 3970 569989889 569989446 7.530000e-144 521.0
64 TraesCS2A01G242900 chr3D 89.049 347 36 1 4481 4825 569989440 569989094 4.700000e-116 429.0
65 TraesCS2A01G242900 chr3D 78.486 251 42 10 2482 2729 3618867 3618626 3.170000e-33 154.0
66 TraesCS2A01G242900 chr3D 90.909 77 6 1 4826 4902 445035199 445035124 1.160000e-17 102.0
67 TraesCS2A01G242900 chr3D 93.939 66 3 1 3080 3145 372621401 372621337 1.500000e-16 99.0
68 TraesCS2A01G242900 chr3D 100.000 45 0 0 5812 5856 582147199 582147243 4.210000e-12 84.2
69 TraesCS2A01G242900 chr5B 92.722 316 23 0 4510 4825 698277641 698277326 2.150000e-124 457.0
70 TraesCS2A01G242900 chr5B 88.406 276 25 1 4211 4479 698277911 698277636 6.340000e-85 326.0
71 TraesCS2A01G242900 chr5B 78.166 229 40 7 2490 2715 693675469 693675248 3.190000e-28 137.0
72 TraesCS2A01G242900 chr5B 95.588 68 3 0 4824 4891 619116660 619116727 6.950000e-20 110.0
73 TraesCS2A01G242900 chr5B 91.139 79 5 2 4826 4904 623116143 623116067 8.990000e-19 106.0
74 TraesCS2A01G242900 chr5B 90.789 76 4 3 3447 3521 687803454 687803381 1.500000e-16 99.0
75 TraesCS2A01G242900 chr6B 91.515 330 24 3 3521 3846 683486782 683486453 1.000000e-122 451.0
76 TraesCS2A01G242900 chr6B 91.185 329 25 3 3522 3846 683411941 683411613 1.680000e-120 444.0
77 TraesCS2A01G242900 chr6B 91.185 329 25 3 3522 3846 683493624 683493296 1.680000e-120 444.0
78 TraesCS2A01G242900 chr6B 93.636 220 14 0 4607 4826 705880218 705879999 4.900000e-86 329.0
79 TraesCS2A01G242900 chr6B 90.535 243 22 1 3917 4159 683486002 683485761 2.950000e-83 320.0
80 TraesCS2A01G242900 chr6B 90.535 243 22 1 3917 4159 683491944 683492185 2.950000e-83 320.0
81 TraesCS2A01G242900 chr6B 90.535 243 22 1 3917 4159 683492843 683492602 2.950000e-83 320.0
82 TraesCS2A01G242900 chr5A 88.525 122 13 1 3343 3464 556721659 556721779 5.300000e-31 147.0
83 TraesCS2A01G242900 chr5A 90.164 61 5 1 6390 6449 182723176 182723116 1.960000e-10 78.7
84 TraesCS2A01G242900 chr5A 91.837 49 4 0 5808 5856 659138300 659138252 1.180000e-07 69.4
85 TraesCS2A01G242900 chr2D 96.970 66 2 0 4826 4891 120988296 120988231 1.930000e-20 111.0
86 TraesCS2A01G242900 chr2D 96.667 60 2 0 3077 3136 480396305 480396364 4.180000e-17 100.0
87 TraesCS2A01G242900 chr2D 90.541 74 5 2 3458 3530 249910780 249910708 5.410000e-16 97.1
88 TraesCS2A01G242900 chr2D 90.278 72 7 0 3080 3151 273951003 273950932 1.950000e-15 95.3
89 TraesCS2A01G242900 chr2D 76.510 149 33 2 2558 2705 14747948 14747801 5.450000e-11 80.5
90 TraesCS2A01G242900 chr2D 100.000 35 0 0 5813 5847 647563102 647563136 1.530000e-06 65.8
91 TraesCS2A01G242900 chr2D 90.000 50 4 1 6406 6454 589236568 589236617 5.490000e-06 63.9
92 TraesCS2A01G242900 chr2B 96.970 66 2 0 4826 4891 412778629 412778694 1.930000e-20 111.0
93 TraesCS2A01G242900 chr2B 81.343 134 14 5 3342 3464 516540852 516540985 1.500000e-16 99.0
94 TraesCS2A01G242900 chr2B 100.000 36 0 0 5812 5847 788494290 788494255 4.240000e-07 67.6
95 TraesCS2A01G242900 chr6A 88.764 89 9 1 3341 3429 183377449 183377362 2.500000e-19 108.0
96 TraesCS2A01G242900 chr4D 94.366 71 3 1 4826 4896 503357981 503357912 2.500000e-19 108.0
97 TraesCS2A01G242900 chr4D 94.203 69 4 0 3077 3145 8673483 8673551 8.990000e-19 106.0
98 TraesCS2A01G242900 chr4D 80.556 108 15 5 6401 6505 481577843 481577739 1.960000e-10 78.7
99 TraesCS2A01G242900 chr4B 95.522 67 2 1 3456 3521 564869460 564869526 8.990000e-19 106.0
100 TraesCS2A01G242900 chr1A 98.333 60 1 0 3462 3521 498452667 498452726 8.990000e-19 106.0
101 TraesCS2A01G242900 chr1A 100.000 45 0 0 5812 5856 489235878 489235922 4.210000e-12 84.2
102 TraesCS2A01G242900 chr3A 95.455 66 2 1 3080 3145 494032571 494032507 3.230000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G242900 chr2A 338516458 338523012 6554 False 12105.000000 12105 100.000000 1 6555 1 chr2A.!!$F1 6554
1 TraesCS2A01G242900 chr7D 379057088 379065622 8534 False 1573.400000 2536 96.959000 672 6555 5 chr7D.!!$F4 5883
2 TraesCS2A01G242900 chr7D 250349643 250350284 641 False 765.000000 765 88.336000 1 636 1 chr7D.!!$F1 635
3 TraesCS2A01G242900 chr7D 500955836 500956888 1052 False 377.000000 438 90.509000 3521 4159 2 chr7D.!!$F5 638
4 TraesCS2A01G242900 chr7B 374484388 374489689 5301 False 973.000000 2431 90.206167 725 6554 6 chr7B.!!$F2 5829
5 TraesCS2A01G242900 chr7B 150526851 150527486 635 True 784.000000 784 89.062000 1 633 1 chr7B.!!$R2 632
6 TraesCS2A01G242900 chr3B 826228890 826230183 1293 False 1443.000000 1443 86.910000 3525 4825 1 chr3B.!!$F3 1300
7 TraesCS2A01G242900 chr3B 132078660 132079275 615 False 780.000000 780 89.789000 1 607 1 chr3B.!!$F2 606
8 TraesCS2A01G242900 chr3B 134027884 134029234 1350 False 735.500000 824 88.466500 3519 4825 2 chr3B.!!$F4 1306
9 TraesCS2A01G242900 chr7A 427546915 427554225 7310 False 752.166667 1328 89.797667 681 6217 6 chr7A.!!$F1 5536
10 TraesCS2A01G242900 chr7A 48042937 48043522 585 True 425.500000 457 92.751000 4211 4825 2 chr7A.!!$R2 614
11 TraesCS2A01G242900 chr4A 148135468 148136693 1225 True 964.000000 1035 95.709000 3631 4826 2 chr4A.!!$R1 1195
12 TraesCS2A01G242900 chr1D 16204897 16205547 650 False 845.000000 845 90.337000 1 642 1 chr1D.!!$F2 641
13 TraesCS2A01G242900 chr1D 423280450 423281059 609 False 778.000000 778 89.886000 1 605 1 chr1D.!!$F3 604
14 TraesCS2A01G242900 chr5D 188387340 188387973 633 False 797.000000 797 89.375000 1 636 1 chr5D.!!$F2 635
15 TraesCS2A01G242900 chrUn 29821244 29821891 647 False 791.000000 791 88.889000 1 640 1 chrUn.!!$F1 639
16 TraesCS2A01G242900 chr1B 530955549 530956192 643 True 789.000000 789 88.906000 1 642 1 chr1B.!!$R1 641
17 TraesCS2A01G242900 chr6D 411994605 411995252 647 True 782.000000 782 88.650000 1 642 1 chr6D.!!$R1 641
18 TraesCS2A01G242900 chr6D 351258383 351259237 854 True 538.000000 747 90.734000 3521 4826 2 chr6D.!!$R2 1305
19 TraesCS2A01G242900 chr3D 569989094 569989889 795 True 475.000000 521 88.467000 3521 4825 2 chr3D.!!$R4 1304
20 TraesCS2A01G242900 chr5B 698277326 698277911 585 True 391.500000 457 90.564000 4211 4825 2 chr5B.!!$R4 614
21 TraesCS2A01G242900 chr6B 683485761 683486782 1021 True 385.500000 451 91.025000 3521 4159 2 chr6B.!!$R3 638
22 TraesCS2A01G242900 chr6B 683492602 683493624 1022 True 382.000000 444 90.860000 3522 4159 2 chr6B.!!$R4 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 688 0.036388 GGCCGTTGGAGATGTTCTCA 60.036 55.000 6.83 0.0 45.12 3.27 F
1070 4867 0.911525 CCATCACACCTCTCCCCAGT 60.912 60.000 0.00 0.0 0.00 4.00 F
2090 5909 7.746703 ACTAGAAAGGTTAATATGATGGGACC 58.253 38.462 0.00 0.0 0.00 4.46 F
3782 12348 0.820074 CCTCTACCGGAGTCAGCGAT 60.820 60.000 9.46 0.0 40.30 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2090 5909 5.687730 GTCGGTCATATGATAGAAGTGTGTG 59.312 44.000 9.02 0.0 0.00 3.82 R
3562 12126 4.569761 TCGACATGCAGTCCTATAGTTC 57.430 45.455 9.71 0.0 44.66 3.01 R
4574 13648 0.327924 TTCCACTCATGGCGGTCATT 59.672 50.000 0.00 0.0 46.80 2.57 R
6013 15106 0.108138 CCCCTCTCGCGATTTCACTT 60.108 55.000 10.36 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 1.140312 TGTGGAGAGAGCTTTTGGGT 58.860 50.000 0.00 0.00 0.00 4.51
193 196 9.069082 GCCAAGATTTAGACTACTCTCACTATA 57.931 37.037 0.00 0.00 0.00 1.31
211 214 5.069648 CACTATAAGCTCTTGAGACATCCCA 59.930 44.000 1.30 0.00 0.00 4.37
263 266 1.396996 CCGTTTTGTTGCCTCCTATCG 59.603 52.381 0.00 0.00 0.00 2.92
286 290 2.025870 TTCGACGTGCCGAAACGA 59.974 55.556 15.32 0.00 46.49 3.85
329 333 0.398522 ATCGAGGAGTGGTGGGCATA 60.399 55.000 0.00 0.00 0.00 3.14
372 376 6.006759 TCATGATTTGTGCGTTTGATGTTA 57.993 33.333 0.00 0.00 0.00 2.41
493 499 6.285224 TCGATCTTCTTAGTTGTGTTTGGAA 58.715 36.000 0.00 0.00 0.00 3.53
512 519 5.851720 TGGAATGCATATGTTGTTTGTGTT 58.148 33.333 0.00 0.00 0.00 3.32
615 637 2.583739 CGCGCAAAACAGATGATCAAA 58.416 42.857 8.75 0.00 0.00 2.69
658 680 3.458163 CTAGGCGGCCGTTGGAGA 61.458 66.667 28.70 5.58 0.00 3.71
659 681 2.762459 TAGGCGGCCGTTGGAGAT 60.762 61.111 28.70 7.50 0.00 2.75
660 682 2.978452 CTAGGCGGCCGTTGGAGATG 62.978 65.000 28.70 5.41 0.00 2.90
661 683 4.778143 GGCGGCCGTTGGAGATGT 62.778 66.667 28.70 0.00 0.00 3.06
662 684 2.746277 GCGGCCGTTGGAGATGTT 60.746 61.111 28.70 0.00 0.00 2.71
663 685 2.750888 GCGGCCGTTGGAGATGTTC 61.751 63.158 28.70 0.32 0.00 3.18
664 686 1.079127 CGGCCGTTGGAGATGTTCT 60.079 57.895 19.50 0.00 0.00 3.01
665 687 1.084370 CGGCCGTTGGAGATGTTCTC 61.084 60.000 19.50 0.00 42.66 2.87
666 688 0.036388 GGCCGTTGGAGATGTTCTCA 60.036 55.000 6.83 0.00 45.12 3.27
667 689 1.363744 GCCGTTGGAGATGTTCTCAG 58.636 55.000 6.83 0.00 45.12 3.35
668 690 1.363744 CCGTTGGAGATGTTCTCAGC 58.636 55.000 6.83 0.00 45.12 4.26
669 691 1.363744 CGTTGGAGATGTTCTCAGCC 58.636 55.000 6.83 0.00 45.12 4.85
670 692 1.363744 GTTGGAGATGTTCTCAGCCG 58.636 55.000 6.83 0.00 45.12 5.52
685 707 2.825836 CCGCTGTGAAGATGCCCC 60.826 66.667 0.00 0.00 0.00 5.80
729 4382 2.837883 GCGGCCACCATAGCACATG 61.838 63.158 2.24 0.00 0.00 3.21
766 4423 7.875554 CCCTCTAGTATTTCTCTTGCCTTTATC 59.124 40.741 0.00 0.00 0.00 1.75
788 4453 2.682858 CGTCCCCTCCATCCCTAAAAAC 60.683 54.545 0.00 0.00 0.00 2.43
789 4454 2.310647 GTCCCCTCCATCCCTAAAAACA 59.689 50.000 0.00 0.00 0.00 2.83
790 4455 2.997463 TCCCCTCCATCCCTAAAAACAA 59.003 45.455 0.00 0.00 0.00 2.83
798 4463 9.435688 CCTCCATCCCTAAAAACAAAATAAAAG 57.564 33.333 0.00 0.00 0.00 2.27
847 4512 2.049063 GCTGAGTGCGAACTCCGT 60.049 61.111 21.10 0.00 41.15 4.69
879 4544 2.358258 CTCTCCCTCTCTCTATCCCCT 58.642 57.143 0.00 0.00 0.00 4.79
880 4545 2.308866 CTCTCCCTCTCTCTATCCCCTC 59.691 59.091 0.00 0.00 0.00 4.30
881 4546 2.089059 TCTCCCTCTCTCTATCCCCTCT 60.089 54.545 0.00 0.00 0.00 3.69
882 4547 2.308866 CTCCCTCTCTCTATCCCCTCTC 59.691 59.091 0.00 0.00 0.00 3.20
883 4548 2.089059 TCCCTCTCTCTATCCCCTCTCT 60.089 54.545 0.00 0.00 0.00 3.10
884 4549 2.308866 CCCTCTCTCTATCCCCTCTCTC 59.691 59.091 0.00 0.00 0.00 3.20
885 4550 3.260205 CCTCTCTCTATCCCCTCTCTCT 58.740 54.545 0.00 0.00 0.00 3.10
886 4551 3.264450 CCTCTCTCTATCCCCTCTCTCTC 59.736 56.522 0.00 0.00 0.00 3.20
887 4552 4.171234 CTCTCTCTATCCCCTCTCTCTCT 58.829 52.174 0.00 0.00 0.00 3.10
888 4553 4.168101 TCTCTCTATCCCCTCTCTCTCTC 58.832 52.174 0.00 0.00 0.00 3.20
889 4554 4.140447 TCTCTCTATCCCCTCTCTCTCTCT 60.140 50.000 0.00 0.00 0.00 3.10
890 4555 4.168101 TCTCTATCCCCTCTCTCTCTCTC 58.832 52.174 0.00 0.00 0.00 3.20
891 4556 4.140447 TCTCTATCCCCTCTCTCTCTCTCT 60.140 50.000 0.00 0.00 0.00 3.10
892 4557 4.168101 TCTATCCCCTCTCTCTCTCTCTC 58.832 52.174 0.00 0.00 0.00 3.20
893 4558 2.587060 TCCCCTCTCTCTCTCTCTCT 57.413 55.000 0.00 0.00 0.00 3.10
1070 4867 0.911525 CCATCACACCTCTCCCCAGT 60.912 60.000 0.00 0.00 0.00 4.00
1867 5683 7.786046 TTACCAGATACTCCAAAGTGAGTTA 57.214 36.000 0.00 0.00 42.92 2.24
2090 5909 7.746703 ACTAGAAAGGTTAATATGATGGGACC 58.253 38.462 0.00 0.00 0.00 4.46
2512 10909 8.934023 ATTAATTGAAGTTCTAGGTTTGTCCA 57.066 30.769 4.17 0.00 39.02 4.02
3562 12126 3.761752 ACATCCAAACTAAATCCAACCCG 59.238 43.478 0.00 0.00 0.00 5.28
3582 12146 3.300857 CGAACTATAGGACTGCATGTCG 58.699 50.000 4.43 0.00 46.24 4.35
3716 12282 5.939883 TCCACAGATTCAAACCATAGACAAG 59.060 40.000 0.00 0.00 0.00 3.16
3782 12348 0.820074 CCTCTACCGGAGTCAGCGAT 60.820 60.000 9.46 0.00 40.30 4.58
3811 12379 3.983821 CCAGGGAGGTAGAAGTAGAACT 58.016 50.000 0.00 0.00 0.00 3.01
3905 12786 2.029666 GCCATAGTCGCGCATCCT 59.970 61.111 8.75 1.41 0.00 3.24
4013 12995 4.700365 TCGTCGCACTCCACGCTG 62.700 66.667 0.00 0.00 35.93 5.18
4128 13116 3.411517 ATGCGCTAGGCCTGGGTT 61.412 61.111 17.99 3.62 42.61 4.11
4129 13117 2.070039 ATGCGCTAGGCCTGGGTTA 61.070 57.895 17.99 7.94 42.61 2.85
4164 13153 6.216569 CGCTTCCATCTCAAAATACTAGCTA 58.783 40.000 0.00 0.00 0.00 3.32
4202 13191 1.966451 GCGCCTAGTGTTGTGCCTT 60.966 57.895 0.00 0.00 31.95 4.35
4233 13253 2.635915 ACCTTCCGGTGTTGTCTAATGA 59.364 45.455 0.00 0.00 43.51 2.57
4569 13643 2.265904 CCGTCGAGGACTGTGGTCA 61.266 63.158 6.70 0.00 45.00 4.02
4574 13648 0.603065 CGAGGACTGTGGTCATGTGA 59.397 55.000 0.00 0.00 43.77 3.58
4839 13914 6.269307 TCCCAGGTTTATATCTAGCACTAACC 59.731 42.308 0.00 0.00 35.06 2.85
4989 14065 1.415659 CTCAGGGATCTCGGCTTGATT 59.584 52.381 0.00 0.00 0.00 2.57
5006 14082 1.850998 GATTAACCCTTAGCCCCCTGT 59.149 52.381 0.00 0.00 0.00 4.00
5047 14123 3.368739 GCACAAAGGCCATGCTCTTAATT 60.369 43.478 5.01 0.00 36.40 1.40
5112 14188 7.448748 AGTGAATTATTGTGTCCAGGTTAAC 57.551 36.000 0.00 0.00 0.00 2.01
5667 14743 8.680903 ACCACAGATCTTTTTGTATTGATGATC 58.319 33.333 0.00 0.00 0.00 2.92
5793 14869 3.076621 CAGCCTGAATTACAGCAGAACA 58.923 45.455 0.00 0.00 44.52 3.18
5794 14870 3.693085 CAGCCTGAATTACAGCAGAACAT 59.307 43.478 0.00 0.00 44.52 2.71
5795 14871 3.693085 AGCCTGAATTACAGCAGAACATG 59.307 43.478 0.00 0.00 44.52 3.21
5796 14872 3.441572 GCCTGAATTACAGCAGAACATGT 59.558 43.478 0.00 0.00 44.52 3.21
5797 14873 4.082571 GCCTGAATTACAGCAGAACATGTT 60.083 41.667 11.78 11.78 44.52 2.71
5798 14874 5.565439 GCCTGAATTACAGCAGAACATGTTT 60.565 40.000 13.36 0.00 44.52 2.83
5799 14875 5.860182 CCTGAATTACAGCAGAACATGTTTG 59.140 40.000 13.36 13.29 44.52 2.93
5800 14876 6.389830 TGAATTACAGCAGAACATGTTTGT 57.610 33.333 13.36 14.83 37.82 2.83
5801 14877 6.919662 CTGAATTACAGCAGAACATGTTTGTT 59.080 34.615 16.51 10.40 43.00 2.83
5802 14878 7.935520 TGAATTACAGCAGAACATGTTTGTTA 58.064 30.769 16.51 9.81 46.01 2.41
5803 14879 8.575589 TGAATTACAGCAGAACATGTTTGTTAT 58.424 29.630 16.51 11.39 46.01 1.89
5804 14880 9.410556 GAATTACAGCAGAACATGTTTGTTATT 57.589 29.630 18.28 18.28 46.01 1.40
5805 14881 8.746922 ATTACAGCAGAACATGTTTGTTATTG 57.253 30.769 16.51 11.30 46.01 1.90
5806 14882 5.531634 ACAGCAGAACATGTTTGTTATTGG 58.468 37.500 13.36 1.27 46.01 3.16
5807 14883 5.068987 ACAGCAGAACATGTTTGTTATTGGT 59.931 36.000 13.36 7.58 46.01 3.67
5808 14884 5.984926 CAGCAGAACATGTTTGTTATTGGTT 59.015 36.000 13.36 0.00 46.01 3.67
5809 14885 6.479660 CAGCAGAACATGTTTGTTATTGGTTT 59.520 34.615 13.36 0.00 46.01 3.27
5810 14886 6.701400 AGCAGAACATGTTTGTTATTGGTTTC 59.299 34.615 13.36 0.00 46.01 2.78
5811 14887 6.701400 GCAGAACATGTTTGTTATTGGTTTCT 59.299 34.615 13.36 0.00 46.01 2.52
5812 14888 7.224557 GCAGAACATGTTTGTTATTGGTTTCTT 59.775 33.333 13.36 0.00 46.01 2.52
5813 14889 9.097257 CAGAACATGTTTGTTATTGGTTTCTTT 57.903 29.630 13.36 0.00 46.01 2.52
5814 14890 9.665719 AGAACATGTTTGTTATTGGTTTCTTTT 57.334 25.926 13.36 0.00 46.01 2.27
5839 14915 7.489574 TTTTGAATTGTTTGGATTGCTTACC 57.510 32.000 0.00 0.00 0.00 2.85
5840 14916 5.798125 TGAATTGTTTGGATTGCTTACCA 57.202 34.783 0.00 0.00 0.00 3.25
5841 14917 5.537188 TGAATTGTTTGGATTGCTTACCAC 58.463 37.500 0.00 0.00 35.81 4.16
5842 14918 5.069648 TGAATTGTTTGGATTGCTTACCACA 59.930 36.000 0.00 0.00 35.81 4.17
5843 14919 5.743636 ATTGTTTGGATTGCTTACCACAT 57.256 34.783 0.00 0.00 35.81 3.21
5844 14920 6.849085 ATTGTTTGGATTGCTTACCACATA 57.151 33.333 0.00 0.00 35.81 2.29
5845 14921 6.849085 TTGTTTGGATTGCTTACCACATAT 57.151 33.333 0.00 0.00 35.81 1.78
5846 14922 6.849085 TGTTTGGATTGCTTACCACATATT 57.151 33.333 0.00 0.00 35.81 1.28
5847 14923 7.238486 TGTTTGGATTGCTTACCACATATTT 57.762 32.000 0.00 0.00 35.81 1.40
5848 14924 7.319646 TGTTTGGATTGCTTACCACATATTTC 58.680 34.615 0.00 0.00 35.81 2.17
5849 14925 7.039434 TGTTTGGATTGCTTACCACATATTTCA 60.039 33.333 0.00 0.00 35.81 2.69
5850 14926 7.658525 TTGGATTGCTTACCACATATTTCAT 57.341 32.000 0.00 0.00 35.81 2.57
5851 14927 7.041635 TGGATTGCTTACCACATATTTCATG 57.958 36.000 0.00 0.00 0.00 3.07
5852 14928 6.606796 TGGATTGCTTACCACATATTTCATGT 59.393 34.615 0.00 0.00 0.00 3.21
5853 14929 6.919662 GGATTGCTTACCACATATTTCATGTG 59.080 38.462 9.84 9.84 46.49 3.21
5918 14994 9.908152 GGTTTTTATATATAAACTGATGTGCCC 57.092 33.333 20.92 5.22 35.22 5.36
5924 15017 2.664402 AAACTGATGTGCCCTCTTGT 57.336 45.000 0.00 0.00 0.00 3.16
6013 15106 1.605058 GGAAGCCGTGAGCCTGTAGA 61.605 60.000 0.00 0.00 45.47 2.59
6073 15170 0.169009 GCAGCGAGGGAAAATGTGTC 59.831 55.000 0.00 0.00 0.00 3.67
6186 15646 2.842496 TCTTGCCTCCATCTCATGAACT 59.158 45.455 0.00 0.00 0.00 3.01
6450 15911 2.777845 GCATCAATGCGATACAAACACG 59.222 45.455 0.00 0.00 44.67 4.49
6472 15933 6.198029 CACGATGAGTGTACATTCAATCTCTC 59.802 42.308 22.89 14.80 45.51 3.20
6486 15947 7.429374 TTCAATCTCTCCATGACTAAGATGT 57.571 36.000 0.00 0.00 0.00 3.06
6508 15969 2.202171 GATCAACACCAACGCGCG 60.202 61.111 30.96 30.96 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
193 196 2.683152 GCATGGGATGTCTCAAGAGCTT 60.683 50.000 0.00 0.00 0.00 3.74
286 290 7.376335 TGAGATCCTTCTGAAGATCATCATT 57.624 36.000 18.68 4.29 30.30 2.57
329 333 1.293179 GCTCTTTGCCGGCCATTTT 59.707 52.632 26.77 0.00 35.15 1.82
339 343 3.306166 GCACAAATCATGATGCTCTTTGC 59.694 43.478 9.46 8.77 43.25 3.68
470 474 6.539649 TTCCAAACACAACTAAGAAGATCG 57.460 37.500 0.00 0.00 0.00 3.69
493 499 6.324819 GCTCTAACACAAACAACATATGCAT 58.675 36.000 3.79 3.79 0.00 3.96
512 519 3.120338 GCAAAAATACTGCACACGCTCTA 60.120 43.478 0.00 0.00 39.69 2.43
608 630 1.752753 CGTTTGCAGCGTTTTGATCA 58.247 45.000 0.00 0.00 0.00 2.92
615 637 3.043340 AAAAAGCGTTTGCAGCGTT 57.957 42.105 12.97 5.62 46.23 4.84
642 664 2.762459 ATCTCCAACGGCCGCCTA 60.762 61.111 28.58 7.56 0.00 3.93
643 665 4.473520 CATCTCCAACGGCCGCCT 62.474 66.667 28.58 10.41 0.00 5.52
644 666 4.778143 ACATCTCCAACGGCCGCC 62.778 66.667 28.58 0.00 0.00 6.13
645 667 2.746277 AACATCTCCAACGGCCGC 60.746 61.111 28.58 0.00 0.00 6.53
646 668 1.079127 AGAACATCTCCAACGGCCG 60.079 57.895 26.86 26.86 0.00 6.13
647 669 0.036388 TGAGAACATCTCCAACGGCC 60.036 55.000 5.00 0.00 42.73 6.13
648 670 1.363744 CTGAGAACATCTCCAACGGC 58.636 55.000 5.00 0.00 42.73 5.68
649 671 1.363744 GCTGAGAACATCTCCAACGG 58.636 55.000 5.00 0.00 42.73 4.44
650 672 1.363744 GGCTGAGAACATCTCCAACG 58.636 55.000 5.00 0.00 42.73 4.10
651 673 1.363744 CGGCTGAGAACATCTCCAAC 58.636 55.000 5.00 0.00 42.73 3.77
652 674 0.391661 GCGGCTGAGAACATCTCCAA 60.392 55.000 0.00 0.00 42.73 3.53
653 675 1.219124 GCGGCTGAGAACATCTCCA 59.781 57.895 0.00 0.00 42.73 3.86
654 676 0.809241 CAGCGGCTGAGAACATCTCC 60.809 60.000 25.33 0.00 42.73 3.71
655 677 0.108424 ACAGCGGCTGAGAACATCTC 60.108 55.000 34.70 0.39 43.65 2.75
656 678 0.390866 CACAGCGGCTGAGAACATCT 60.391 55.000 34.70 8.34 35.18 2.90
657 679 0.390340 TCACAGCGGCTGAGAACATC 60.390 55.000 34.70 0.00 35.18 3.06
658 680 0.035317 TTCACAGCGGCTGAGAACAT 59.965 50.000 34.70 9.90 36.48 2.71
659 681 0.601046 CTTCACAGCGGCTGAGAACA 60.601 55.000 34.70 17.55 36.48 3.18
660 682 0.319900 TCTTCACAGCGGCTGAGAAC 60.320 55.000 34.70 0.00 36.48 3.01
661 683 0.610174 ATCTTCACAGCGGCTGAGAA 59.390 50.000 34.70 32.68 38.37 2.87
662 684 0.108472 CATCTTCACAGCGGCTGAGA 60.108 55.000 34.70 28.79 35.18 3.27
663 685 1.703438 GCATCTTCACAGCGGCTGAG 61.703 60.000 34.70 26.98 35.18 3.35
664 686 1.742880 GCATCTTCACAGCGGCTGA 60.743 57.895 34.70 13.78 35.18 4.26
665 687 2.758089 GGCATCTTCACAGCGGCTG 61.758 63.158 27.43 27.43 37.52 4.85
666 688 2.437359 GGCATCTTCACAGCGGCT 60.437 61.111 0.00 0.00 0.00 5.52
667 689 3.512516 GGGCATCTTCACAGCGGC 61.513 66.667 0.00 0.00 0.00 6.53
668 690 2.825836 GGGGCATCTTCACAGCGG 60.826 66.667 0.00 0.00 0.00 5.52
669 691 3.197790 CGGGGCATCTTCACAGCG 61.198 66.667 0.00 0.00 0.00 5.18
670 692 2.825836 CCGGGGCATCTTCACAGC 60.826 66.667 0.00 0.00 0.00 4.40
685 707 5.725316 GCTTTTTCTTCTTCTCGAATAGCCG 60.725 44.000 0.00 0.00 0.00 5.52
729 4382 4.932911 ATACTAGAGGGTAGGTAGGCTC 57.067 50.000 0.00 0.00 0.00 4.70
766 4423 0.693092 TTTAGGGATGGAGGGGACGG 60.693 60.000 0.00 0.00 0.00 4.79
788 4453 6.152831 AGGAGGGGACGATTTCTTTTATTTTG 59.847 38.462 0.00 0.00 0.00 2.44
789 4454 6.253758 AGGAGGGGACGATTTCTTTTATTTT 58.746 36.000 0.00 0.00 0.00 1.82
790 4455 5.827756 AGGAGGGGACGATTTCTTTTATTT 58.172 37.500 0.00 0.00 0.00 1.40
798 4463 0.102663 GACGAGGAGGGGACGATTTC 59.897 60.000 0.00 0.00 0.00 2.17
801 4466 2.516460 CGACGAGGAGGGGACGAT 60.516 66.667 0.00 0.00 0.00 3.73
847 4512 2.359404 GGAGAGGGGAGGACACGA 59.641 66.667 0.00 0.00 0.00 4.35
879 4544 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
880 4545 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
881 4546 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
882 4547 4.501229 GCAGAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
883 4548 3.386078 GCAGAGAGAGAGAGAGAGAGAGA 59.614 52.174 0.00 0.00 0.00 3.10
884 4549 3.387374 AGCAGAGAGAGAGAGAGAGAGAG 59.613 52.174 0.00 0.00 0.00 3.20
885 4550 3.378512 AGCAGAGAGAGAGAGAGAGAGA 58.621 50.000 0.00 0.00 0.00 3.10
886 4551 3.834489 AGCAGAGAGAGAGAGAGAGAG 57.166 52.381 0.00 0.00 0.00 3.20
887 4552 5.604231 AGATTAGCAGAGAGAGAGAGAGAGA 59.396 44.000 0.00 0.00 0.00 3.10
888 4553 5.699915 CAGATTAGCAGAGAGAGAGAGAGAG 59.300 48.000 0.00 0.00 0.00 3.20
889 4554 5.366477 TCAGATTAGCAGAGAGAGAGAGAGA 59.634 44.000 0.00 0.00 0.00 3.10
890 4555 5.614308 TCAGATTAGCAGAGAGAGAGAGAG 58.386 45.833 0.00 0.00 0.00 3.20
891 4556 5.130975 ACTCAGATTAGCAGAGAGAGAGAGA 59.869 44.000 0.00 0.00 34.50 3.10
892 4557 5.371526 ACTCAGATTAGCAGAGAGAGAGAG 58.628 45.833 0.00 0.00 34.50 3.20
893 4558 5.372343 ACTCAGATTAGCAGAGAGAGAGA 57.628 43.478 0.00 0.00 34.50 3.10
1070 4867 2.415608 CCGCAGAGGAAGCCGTCTA 61.416 63.158 0.00 0.00 45.00 2.59
2090 5909 5.687730 GTCGGTCATATGATAGAAGTGTGTG 59.312 44.000 9.02 0.00 0.00 3.82
3562 12126 4.569761 TCGACATGCAGTCCTATAGTTC 57.430 45.455 9.71 0.00 44.66 3.01
3582 12146 5.792741 TGGTTTGATTTGGTTTGGATGATC 58.207 37.500 0.00 0.00 0.00 2.92
3716 12282 6.401474 CGTTAGATAAGCATGTGCATATGGAC 60.401 42.308 22.93 19.53 45.16 4.02
3811 12379 1.663643 GATGGCGCGTGAAATCAACTA 59.336 47.619 8.43 0.00 0.00 2.24
3905 12786 1.153449 GATGGGACGTCGATGGCAA 60.153 57.895 13.63 0.00 0.00 4.52
4143 13131 6.216569 CGCTAGCTAGTATTTTGAGATGGAA 58.783 40.000 21.62 0.00 0.00 3.53
4287 13314 0.888619 AGAAATCACAGTCGGCGAGA 59.111 50.000 11.20 4.02 0.00 4.04
4426 13498 1.000739 CAGCCACAACCCCATCCAT 59.999 57.895 0.00 0.00 0.00 3.41
4569 13643 1.065199 ACTCATGGCGGTCATTCACAT 60.065 47.619 0.00 0.00 32.92 3.21
4574 13648 0.327924 TTCCACTCATGGCGGTCATT 59.672 50.000 0.00 0.00 46.80 2.57
4839 13914 5.614308 TCAAATGGATGTATCTAGCACCAG 58.386 41.667 0.00 0.00 0.00 4.00
4989 14065 0.996583 CAACAGGGGGCTAAGGGTTA 59.003 55.000 0.00 0.00 0.00 2.85
5667 14743 1.955529 GACGCCGCACATGTACACTG 61.956 60.000 0.00 0.52 0.00 3.66
5754 14830 6.816640 TCAGGCTGTTATACAACAATACACTC 59.183 38.462 15.27 0.00 43.92 3.51
5814 14890 7.554118 TGGTAAGCAATCCAAACAATTCAAAAA 59.446 29.630 0.00 0.00 0.00 1.94
5815 14891 7.011857 GTGGTAAGCAATCCAAACAATTCAAAA 59.988 33.333 0.00 0.00 35.38 2.44
5816 14892 6.481644 GTGGTAAGCAATCCAAACAATTCAAA 59.518 34.615 0.00 0.00 35.38 2.69
5817 14893 5.988561 GTGGTAAGCAATCCAAACAATTCAA 59.011 36.000 0.00 0.00 35.38 2.69
5818 14894 5.069648 TGTGGTAAGCAATCCAAACAATTCA 59.930 36.000 0.00 0.00 35.38 2.57
5819 14895 5.537188 TGTGGTAAGCAATCCAAACAATTC 58.463 37.500 0.00 0.00 35.38 2.17
5820 14896 5.543507 TGTGGTAAGCAATCCAAACAATT 57.456 34.783 0.00 0.00 35.38 2.32
5821 14897 5.743636 ATGTGGTAAGCAATCCAAACAAT 57.256 34.783 0.00 0.00 35.38 2.71
5822 14898 6.849085 ATATGTGGTAAGCAATCCAAACAA 57.151 33.333 0.00 0.00 35.38 2.83
5823 14899 6.849085 AATATGTGGTAAGCAATCCAAACA 57.151 33.333 0.00 0.00 35.38 2.83
5824 14900 7.319646 TGAAATATGTGGTAAGCAATCCAAAC 58.680 34.615 0.00 0.00 35.38 2.93
5825 14901 7.473735 TGAAATATGTGGTAAGCAATCCAAA 57.526 32.000 0.00 0.00 35.38 3.28
5826 14902 7.123997 ACATGAAATATGTGGTAAGCAATCCAA 59.876 33.333 0.00 0.00 35.38 3.53
5827 14903 6.606796 ACATGAAATATGTGGTAAGCAATCCA 59.393 34.615 0.00 0.00 0.00 3.41
5828 14904 6.919662 CACATGAAATATGTGGTAAGCAATCC 59.080 38.462 11.21 0.00 44.04 3.01
5829 14905 7.919313 CACATGAAATATGTGGTAAGCAATC 57.081 36.000 11.21 0.00 44.04 2.67
5857 14933 8.466798 GCTCCCAAGTACAATAACAAACATATT 58.533 33.333 0.00 0.00 0.00 1.28
5858 14934 7.834181 AGCTCCCAAGTACAATAACAAACATAT 59.166 33.333 0.00 0.00 0.00 1.78
5859 14935 7.172342 AGCTCCCAAGTACAATAACAAACATA 58.828 34.615 0.00 0.00 0.00 2.29
5918 14994 2.606725 GTCATGAATCTCGGCACAAGAG 59.393 50.000 0.00 0.00 0.00 2.85
5924 15017 0.528466 GCTCGTCATGAATCTCGGCA 60.528 55.000 0.00 0.00 0.00 5.69
6013 15106 0.108138 CCCCTCTCGCGATTTCACTT 60.108 55.000 10.36 0.00 0.00 3.16
6073 15170 3.499737 GATGCACGTTCCAGGCCG 61.500 66.667 0.00 0.00 0.00 6.13
6186 15646 1.604308 CCCATGACAACTGGCTGCA 60.604 57.895 0.50 0.00 32.08 4.41
6432 15893 3.929610 TCATCGTGTTTGTATCGCATTGA 59.070 39.130 0.00 0.00 0.00 2.57
6450 15911 6.577103 TGGAGAGATTGAATGTACACTCATC 58.423 40.000 7.99 7.99 0.00 2.92
6467 15928 4.026052 TGCACATCTTAGTCATGGAGAGA 58.974 43.478 0.00 0.00 0.00 3.10
6472 15933 5.061179 TGATCATGCACATCTTAGTCATGG 58.939 41.667 8.56 0.00 36.22 3.66
6486 15947 0.240678 GCGTTGGTGTTGATCATGCA 59.759 50.000 0.00 0.00 0.00 3.96
6508 15969 2.118228 TTGTCATTCTTTGTGTGCGC 57.882 45.000 0.00 0.00 0.00 6.09
6510 15971 3.981211 ACCATTGTCATTCTTTGTGTGC 58.019 40.909 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.