Multiple sequence alignment - TraesCS2A01G240600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G240600 chr2A 100.000 2240 0 0 1 2240 335820310 335818071 0.000000e+00 4137
1 TraesCS2A01G240600 chr2A 97.433 1519 38 1 1 1518 726903962 726902444 0.000000e+00 2588
2 TraesCS2A01G240600 chr2A 99.742 387 1 0 1854 2240 335810349 335809963 0.000000e+00 710
3 TraesCS2A01G240600 chr2A 98.454 388 6 0 1853 2240 113421242 113421629 0.000000e+00 684
4 TraesCS2A01G240600 chr3B 97.038 1519 44 1 1 1518 201572294 201570776 0.000000e+00 2555
5 TraesCS2A01G240600 chr3B 97.633 338 8 0 1516 1853 201547703 201547366 4.150000e-162 580
6 TraesCS2A01G240600 chr5D 97.038 1519 42 3 1 1518 503247765 503249281 0.000000e+00 2553
7 TraesCS2A01G240600 chr5D 97.038 1519 41 4 1 1518 503262283 503260768 0.000000e+00 2553
8 TraesCS2A01G240600 chr2D 96.972 1519 45 1 1 1518 591987102 591988620 0.000000e+00 2549
9 TraesCS2A01G240600 chr2D 96.840 1519 45 3 1 1518 272809753 272808237 0.000000e+00 2536
10 TraesCS2A01G240600 chr2D 97.633 338 8 0 1516 1853 591989716 591990053 4.150000e-162 580
11 TraesCS2A01G240600 chr7B 96.774 1519 48 1 1 1518 663096932 663095414 0.000000e+00 2532
12 TraesCS2A01G240600 chr7B 96.708 1519 49 1 1 1518 662729407 662730925 0.000000e+00 2527
13 TraesCS2A01G240600 chr3D 96.708 1519 48 2 1 1518 589261034 589259517 0.000000e+00 2527
14 TraesCS2A01G240600 chr3D 97.626 337 8 0 1516 1852 589259485 589259149 1.490000e-161 579
15 TraesCS2A01G240600 chrUn 99.742 387 1 0 1854 2240 330707547 330707161 0.000000e+00 710
16 TraesCS2A01G240600 chrUn 99.742 387 1 0 1854 2240 330749607 330749993 0.000000e+00 710
17 TraesCS2A01G240600 chrUn 97.633 338 8 0 1516 1853 392770253 392770590 4.150000e-162 580
18 TraesCS2A01G240600 chr1A 99.742 387 1 0 1854 2240 391715623 391715237 0.000000e+00 710
19 TraesCS2A01G240600 chr1A 99.742 387 1 0 1854 2240 391726105 391725719 0.000000e+00 710
20 TraesCS2A01G240600 chr1A 99.742 387 1 0 1854 2240 391815973 391815587 0.000000e+00 710
21 TraesCS2A01G240600 chr1A 97.633 338 8 0 1516 1853 554464285 554464622 4.150000e-162 580
22 TraesCS2A01G240600 chr4A 99.229 389 3 0 1852 2240 12429140 12428752 0.000000e+00 702
23 TraesCS2A01G240600 chr6B 96.124 387 14 1 1854 2240 336965275 336965660 4.060000e-177 630
24 TraesCS2A01G240600 chr7D 97.633 338 8 0 1516 1853 77234117 77233780 4.150000e-162 580
25 TraesCS2A01G240600 chr7D 97.898 333 7 0 1521 1853 231570727 231570395 5.360000e-161 577
26 TraesCS2A01G240600 chr7A 97.633 338 8 0 1516 1853 258306771 258306434 4.150000e-162 580
27 TraesCS2A01G240600 chr3A 97.076 342 9 1 1516 1856 695644428 695644769 1.930000e-160 575


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G240600 chr2A 335818071 335820310 2239 True 4137.0 4137 100.0000 1 2240 1 chr2A.!!$R2 2239
1 TraesCS2A01G240600 chr2A 726902444 726903962 1518 True 2588.0 2588 97.4330 1 1518 1 chr2A.!!$R3 1517
2 TraesCS2A01G240600 chr3B 201570776 201572294 1518 True 2555.0 2555 97.0380 1 1518 1 chr3B.!!$R2 1517
3 TraesCS2A01G240600 chr5D 503247765 503249281 1516 False 2553.0 2553 97.0380 1 1518 1 chr5D.!!$F1 1517
4 TraesCS2A01G240600 chr5D 503260768 503262283 1515 True 2553.0 2553 97.0380 1 1518 1 chr5D.!!$R1 1517
5 TraesCS2A01G240600 chr2D 272808237 272809753 1516 True 2536.0 2536 96.8400 1 1518 1 chr2D.!!$R1 1517
6 TraesCS2A01G240600 chr2D 591987102 591990053 2951 False 1564.5 2549 97.3025 1 1853 2 chr2D.!!$F1 1852
7 TraesCS2A01G240600 chr7B 663095414 663096932 1518 True 2532.0 2532 96.7740 1 1518 1 chr7B.!!$R1 1517
8 TraesCS2A01G240600 chr7B 662729407 662730925 1518 False 2527.0 2527 96.7080 1 1518 1 chr7B.!!$F1 1517
9 TraesCS2A01G240600 chr3D 589259149 589261034 1885 True 1553.0 2527 97.1670 1 1852 2 chr3D.!!$R1 1851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 516 1.078143 ATTGCTTCTCCACGAGGCC 60.078 57.895 0.0 0.0 43.56 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 2639 0.526662 GGACCGAACTGTCTCACGAT 59.473 55.0 0.0 0.0 35.54 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 4.652421 AGCTATGGGATGTCAAAATGCATT 59.348 37.500 5.99 5.99 0.00 3.56
191 192 3.395639 TGTCGGCTTGAGTAACGAAAAT 58.604 40.909 0.00 0.00 37.08 1.82
196 197 5.870433 TCGGCTTGAGTAACGAAAATATTGA 59.130 36.000 0.00 0.00 31.79 2.57
301 302 1.112113 AGGCGTAGTCGATGGACAAT 58.888 50.000 10.69 0.00 45.92 2.71
458 459 2.772691 GCCGAGGTCCGAGTACCAG 61.773 68.421 4.68 0.00 42.40 4.00
515 516 1.078143 ATTGCTTCTCCACGAGGCC 60.078 57.895 0.00 0.00 43.56 5.19
522 523 1.762460 CTCCACGAGGCCCATACCT 60.762 63.158 0.00 0.00 45.04 3.08
647 649 2.795960 AGGTAGAGAATACCTAGGGGCA 59.204 50.000 14.81 0.00 45.47 5.36
913 915 7.865707 CGTAACTATAACGGTCCTAACATAGT 58.134 38.462 0.00 0.00 36.71 2.12
1221 2287 3.370104 CAAGGGACAGTCTCAGGTAGAT 58.630 50.000 2.43 0.00 36.36 1.98
1234 2300 6.778559 GTCTCAGGTAGATAGTTTCTATGGGT 59.221 42.308 0.00 0.00 39.14 4.51
1242 2308 2.463752 AGTTTCTATGGGTCGTAGGCA 58.536 47.619 0.00 0.00 0.00 4.75
1386 2452 1.252215 TTAGTGATCCGACGGTGCCA 61.252 55.000 14.79 7.60 0.00 4.92
1518 2585 0.412244 ACCTGGAGCTGTAGGTGGTA 59.588 55.000 15.79 0.00 45.30 3.25
1519 2586 1.203262 ACCTGGAGCTGTAGGTGGTAA 60.203 52.381 15.79 0.00 45.30 2.85
1520 2587 1.482593 CCTGGAGCTGTAGGTGGTAAG 59.517 57.143 0.00 0.00 0.00 2.34
1521 2588 2.180276 CTGGAGCTGTAGGTGGTAAGT 58.820 52.381 0.00 0.00 0.00 2.24
1522 2589 1.899814 TGGAGCTGTAGGTGGTAAGTG 59.100 52.381 0.00 0.00 0.00 3.16
1523 2590 2.176889 GGAGCTGTAGGTGGTAAGTGA 58.823 52.381 0.00 0.00 0.00 3.41
1524 2591 2.094130 GGAGCTGTAGGTGGTAAGTGAC 60.094 54.545 0.00 0.00 0.00 3.67
1538 2639 1.507140 AGTGACCTGGGTTCAGAACA 58.493 50.000 15.36 0.00 43.49 3.18
1563 2664 3.381908 GTGAGACAGTTCGGTCCATATCT 59.618 47.826 0.02 0.00 38.59 1.98
1572 2673 1.213296 GGTCCATATCTGGTGTGGGT 58.787 55.000 3.72 0.00 43.61 4.51
1768 2869 1.272760 CCCTAGAGCCTCCGGTATCAT 60.273 57.143 0.00 0.00 0.00 2.45
1830 2931 5.105106 TGGAGCGACAGAAGTATGGAAATAA 60.105 40.000 0.00 0.00 0.00 1.40
1853 2954 3.507009 GGTAGCGGCGAGACGAGT 61.507 66.667 12.98 0.00 35.47 4.18
1854 2955 2.277373 GTAGCGGCGAGACGAGTG 60.277 66.667 12.98 0.00 35.47 3.51
1855 2956 2.745100 TAGCGGCGAGACGAGTGT 60.745 61.111 12.98 0.00 35.47 3.55
1856 2957 3.035576 TAGCGGCGAGACGAGTGTG 62.036 63.158 12.98 0.00 35.47 3.82
1857 2958 4.400109 GCGGCGAGACGAGTGTGA 62.400 66.667 12.98 0.00 35.47 3.58
1858 2959 2.502080 CGGCGAGACGAGTGTGAC 60.502 66.667 0.00 0.00 35.47 3.67
1859 2960 2.502080 GGCGAGACGAGTGTGACG 60.502 66.667 0.00 0.00 0.00 4.35
1860 2961 3.166630 GCGAGACGAGTGTGACGC 61.167 66.667 0.00 0.00 40.20 5.19
1861 2962 2.502080 CGAGACGAGTGTGACGCC 60.502 66.667 0.00 0.00 0.00 5.68
1862 2963 2.126424 GAGACGAGTGTGACGCCC 60.126 66.667 0.00 0.00 0.00 6.13
1863 2964 2.910479 AGACGAGTGTGACGCCCA 60.910 61.111 0.00 0.00 0.00 5.36
1864 2965 2.430921 GACGAGTGTGACGCCCAG 60.431 66.667 0.00 0.00 0.00 4.45
1865 2966 2.910479 ACGAGTGTGACGCCCAGA 60.910 61.111 0.00 0.00 0.00 3.86
1866 2967 2.214181 GACGAGTGTGACGCCCAGAT 62.214 60.000 0.00 0.00 0.00 2.90
1867 2968 0.963856 ACGAGTGTGACGCCCAGATA 60.964 55.000 0.00 0.00 0.00 1.98
1868 2969 0.248661 CGAGTGTGACGCCCAGATAG 60.249 60.000 0.00 0.00 0.00 2.08
1869 2970 0.818296 GAGTGTGACGCCCAGATAGT 59.182 55.000 0.00 0.00 0.00 2.12
1870 2971 1.204941 GAGTGTGACGCCCAGATAGTT 59.795 52.381 0.00 0.00 0.00 2.24
1871 2972 2.426024 GAGTGTGACGCCCAGATAGTTA 59.574 50.000 0.00 0.00 0.00 2.24
1872 2973 2.427453 AGTGTGACGCCCAGATAGTTAG 59.573 50.000 0.00 0.00 0.00 2.34
1873 2974 1.754803 TGTGACGCCCAGATAGTTAGG 59.245 52.381 0.00 0.00 0.00 2.69
1874 2975 0.750850 TGACGCCCAGATAGTTAGGC 59.249 55.000 0.00 0.00 42.18 3.93
1875 2976 1.041437 GACGCCCAGATAGTTAGGCT 58.959 55.000 0.00 0.00 43.48 4.58
1876 2977 2.236766 GACGCCCAGATAGTTAGGCTA 58.763 52.381 0.00 0.00 43.48 3.93
1877 2978 1.962100 ACGCCCAGATAGTTAGGCTAC 59.038 52.381 0.00 0.00 43.48 3.58
1878 2979 1.961394 CGCCCAGATAGTTAGGCTACA 59.039 52.381 0.00 0.00 43.48 2.74
1879 2980 2.029828 CGCCCAGATAGTTAGGCTACAG 60.030 54.545 0.00 0.00 43.48 2.74
1880 2981 2.966516 GCCCAGATAGTTAGGCTACAGT 59.033 50.000 0.00 0.00 42.34 3.55
1881 2982 4.150359 GCCCAGATAGTTAGGCTACAGTA 58.850 47.826 0.00 0.00 42.34 2.74
1882 2983 4.587684 GCCCAGATAGTTAGGCTACAGTAA 59.412 45.833 0.00 0.00 42.34 2.24
1883 2984 5.070047 GCCCAGATAGTTAGGCTACAGTAAA 59.930 44.000 0.00 0.00 42.34 2.01
1884 2985 6.407752 GCCCAGATAGTTAGGCTACAGTAAAA 60.408 42.308 0.00 0.00 42.34 1.52
1885 2986 6.985059 CCCAGATAGTTAGGCTACAGTAAAAC 59.015 42.308 0.00 0.00 31.59 2.43
1886 2987 6.985059 CCAGATAGTTAGGCTACAGTAAAACC 59.015 42.308 0.00 0.00 31.59 3.27
1887 2988 6.985059 CAGATAGTTAGGCTACAGTAAAACCC 59.015 42.308 0.00 0.00 31.59 4.11
1888 2989 6.901857 AGATAGTTAGGCTACAGTAAAACCCT 59.098 38.462 0.00 0.00 31.59 4.34
1889 2990 5.161943 AGTTAGGCTACAGTAAAACCCTG 57.838 43.478 0.00 0.00 36.01 4.45
1890 2991 2.491675 AGGCTACAGTAAAACCCTGC 57.508 50.000 0.00 0.00 33.09 4.85
1891 2992 1.985895 AGGCTACAGTAAAACCCTGCT 59.014 47.619 0.00 0.00 33.09 4.24
1892 2993 3.178865 AGGCTACAGTAAAACCCTGCTA 58.821 45.455 0.00 0.00 33.09 3.49
1893 2994 3.585732 AGGCTACAGTAAAACCCTGCTAA 59.414 43.478 0.00 0.00 33.09 3.09
1894 2995 4.227527 AGGCTACAGTAAAACCCTGCTAAT 59.772 41.667 0.00 0.00 33.09 1.73
1895 2996 4.335594 GGCTACAGTAAAACCCTGCTAATG 59.664 45.833 0.00 0.00 33.09 1.90
1896 2997 5.183228 GCTACAGTAAAACCCTGCTAATGA 58.817 41.667 0.00 0.00 33.09 2.57
1897 2998 5.823045 GCTACAGTAAAACCCTGCTAATGAT 59.177 40.000 0.00 0.00 33.09 2.45
1898 2999 6.238484 GCTACAGTAAAACCCTGCTAATGATG 60.238 42.308 0.00 0.00 33.09 3.07
1899 3000 4.399303 ACAGTAAAACCCTGCTAATGATGC 59.601 41.667 0.00 0.00 33.09 3.91
1900 3001 3.954258 AGTAAAACCCTGCTAATGATGCC 59.046 43.478 0.00 0.00 0.00 4.40
1901 3002 2.834638 AAACCCTGCTAATGATGCCT 57.165 45.000 0.00 0.00 0.00 4.75
1902 3003 2.834638 AACCCTGCTAATGATGCCTT 57.165 45.000 0.00 0.00 0.00 4.35
1903 3004 2.062971 ACCCTGCTAATGATGCCTTG 57.937 50.000 0.00 0.00 0.00 3.61
1904 3005 1.285962 ACCCTGCTAATGATGCCTTGT 59.714 47.619 0.00 0.00 0.00 3.16
1905 3006 1.952296 CCCTGCTAATGATGCCTTGTC 59.048 52.381 0.00 0.00 0.00 3.18
1906 3007 2.646930 CCTGCTAATGATGCCTTGTCA 58.353 47.619 0.00 0.00 0.00 3.58
1907 3008 2.357009 CCTGCTAATGATGCCTTGTCAC 59.643 50.000 0.00 0.00 0.00 3.67
1908 3009 2.357009 CTGCTAATGATGCCTTGTCACC 59.643 50.000 0.00 0.00 0.00 4.02
1909 3010 1.678101 GCTAATGATGCCTTGTCACCC 59.322 52.381 0.00 0.00 0.00 4.61
1910 3011 2.684927 GCTAATGATGCCTTGTCACCCT 60.685 50.000 0.00 0.00 0.00 4.34
1911 3012 2.610438 AATGATGCCTTGTCACCCTT 57.390 45.000 0.00 0.00 0.00 3.95
1912 3013 1.843368 ATGATGCCTTGTCACCCTTG 58.157 50.000 0.00 0.00 0.00 3.61
1913 3014 0.770499 TGATGCCTTGTCACCCTTGA 59.230 50.000 0.00 0.00 0.00 3.02
1925 3026 4.901197 TCACCCTTGACACTATTGCTAA 57.099 40.909 0.00 0.00 0.00 3.09
1926 3027 5.235850 TCACCCTTGACACTATTGCTAAA 57.764 39.130 0.00 0.00 0.00 1.85
1927 3028 5.001232 TCACCCTTGACACTATTGCTAAAC 58.999 41.667 0.00 0.00 0.00 2.01
1928 3029 4.759693 CACCCTTGACACTATTGCTAAACA 59.240 41.667 0.00 0.00 0.00 2.83
1929 3030 4.760204 ACCCTTGACACTATTGCTAAACAC 59.240 41.667 0.00 0.00 0.00 3.32
1930 3031 4.759693 CCCTTGACACTATTGCTAAACACA 59.240 41.667 0.00 0.00 0.00 3.72
1931 3032 5.415701 CCCTTGACACTATTGCTAAACACAT 59.584 40.000 0.00 0.00 0.00 3.21
1932 3033 6.317088 CCTTGACACTATTGCTAAACACATG 58.683 40.000 0.00 0.00 0.00 3.21
1933 3034 6.072508 CCTTGACACTATTGCTAAACACATGT 60.073 38.462 0.00 0.00 0.00 3.21
1934 3035 6.875948 TGACACTATTGCTAAACACATGTT 57.124 33.333 0.00 0.00 40.50 2.71
1935 3036 7.971183 TGACACTATTGCTAAACACATGTTA 57.029 32.000 0.00 0.00 37.25 2.41
1936 3037 8.028540 TGACACTATTGCTAAACACATGTTAG 57.971 34.615 0.00 0.00 37.25 2.34
1937 3038 7.875554 TGACACTATTGCTAAACACATGTTAGA 59.124 33.333 7.15 0.00 37.25 2.10
1938 3039 8.792830 ACACTATTGCTAAACACATGTTAGAT 57.207 30.769 7.15 0.00 37.25 1.98
1939 3040 8.883731 ACACTATTGCTAAACACATGTTAGATC 58.116 33.333 7.15 0.00 37.25 2.75
1940 3041 8.882736 CACTATTGCTAAACACATGTTAGATCA 58.117 33.333 7.15 0.00 37.25 2.92
1941 3042 9.448438 ACTATTGCTAAACACATGTTAGATCAA 57.552 29.630 7.15 3.80 37.25 2.57
1944 3045 8.795786 TTGCTAAACACATGTTAGATCAAAAC 57.204 30.769 7.15 0.00 37.25 2.43
1945 3046 7.935520 TGCTAAACACATGTTAGATCAAAACA 58.064 30.769 13.93 13.93 40.85 2.83
1946 3047 8.575589 TGCTAAACACATGTTAGATCAAAACAT 58.424 29.630 16.53 16.53 45.97 2.71
1947 3048 9.410556 GCTAAACACATGTTAGATCAAAACATT 57.589 29.630 18.63 10.77 43.31 2.71
1950 3051 9.814899 AAACACATGTTAGATCAAAACATTTCA 57.185 25.926 18.63 0.00 43.31 2.69
1951 3052 9.814899 AACACATGTTAGATCAAAACATTTCAA 57.185 25.926 18.63 0.00 43.31 2.69
1952 3053 9.814899 ACACATGTTAGATCAAAACATTTCAAA 57.185 25.926 18.63 0.00 43.31 2.69
1972 3073 7.593875 TCAAAATCAAATTTGGATTTAGGCG 57.406 32.000 17.90 10.98 42.48 5.52
1973 3074 7.382110 TCAAAATCAAATTTGGATTTAGGCGA 58.618 30.769 17.90 12.49 42.48 5.54
1974 3075 7.875041 TCAAAATCAAATTTGGATTTAGGCGAA 59.125 29.630 17.90 0.00 42.48 4.70
1975 3076 7.595311 AAATCAAATTTGGATTTAGGCGAAC 57.405 32.000 17.90 0.00 41.74 3.95
1976 3077 5.713792 TCAAATTTGGATTTAGGCGAACA 57.286 34.783 17.90 0.00 33.78 3.18
1977 3078 6.090483 TCAAATTTGGATTTAGGCGAACAA 57.910 33.333 17.90 0.00 33.78 2.83
1978 3079 5.923684 TCAAATTTGGATTTAGGCGAACAAC 59.076 36.000 17.90 0.00 33.78 3.32
1979 3080 5.461032 AATTTGGATTTAGGCGAACAACA 57.539 34.783 0.00 0.00 0.00 3.33
1980 3081 4.920640 TTTGGATTTAGGCGAACAACAA 57.079 36.364 0.00 0.00 0.00 2.83
1981 3082 4.920640 TTGGATTTAGGCGAACAACAAA 57.079 36.364 0.00 0.00 0.00 2.83
1982 3083 4.920640 TGGATTTAGGCGAACAACAAAA 57.079 36.364 0.00 0.00 0.00 2.44
1983 3084 4.865776 TGGATTTAGGCGAACAACAAAAG 58.134 39.130 0.00 0.00 0.00 2.27
1984 3085 4.339814 TGGATTTAGGCGAACAACAAAAGT 59.660 37.500 0.00 0.00 0.00 2.66
1985 3086 5.163499 TGGATTTAGGCGAACAACAAAAGTT 60.163 36.000 0.00 0.00 0.00 2.66
1986 3087 5.751509 GGATTTAGGCGAACAACAAAAGTTT 59.248 36.000 0.00 0.00 0.00 2.66
1987 3088 6.256975 GGATTTAGGCGAACAACAAAAGTTTT 59.743 34.615 0.00 0.00 0.00 2.43
1988 3089 6.635166 TTTAGGCGAACAACAAAAGTTTTC 57.365 33.333 0.00 0.00 0.00 2.29
1989 3090 4.181309 AGGCGAACAACAAAAGTTTTCA 57.819 36.364 0.00 0.00 0.00 2.69
1990 3091 4.561105 AGGCGAACAACAAAAGTTTTCAA 58.439 34.783 0.00 0.00 0.00 2.69
1991 3092 4.991687 AGGCGAACAACAAAAGTTTTCAAA 59.008 33.333 0.00 0.00 0.00 2.69
1992 3093 5.076765 GGCGAACAACAAAAGTTTTCAAAC 58.923 37.500 0.00 0.00 39.17 2.93
1993 3094 5.333416 GGCGAACAACAAAAGTTTTCAAACA 60.333 36.000 0.00 0.00 41.30 2.83
1994 3095 6.303370 GCGAACAACAAAAGTTTTCAAACAT 58.697 32.000 0.00 0.00 41.30 2.71
1995 3096 6.794636 GCGAACAACAAAAGTTTTCAAACATT 59.205 30.769 0.00 0.00 41.30 2.71
1996 3097 7.952637 GCGAACAACAAAAGTTTTCAAACATTA 59.047 29.630 0.00 0.00 41.30 1.90
1997 3098 9.798885 CGAACAACAAAAGTTTTCAAACATTAA 57.201 25.926 0.00 0.00 41.30 1.40
2022 3123 9.442047 AAAACTAAAATGTCCAAAATGTGTCAA 57.558 25.926 0.00 0.00 0.00 3.18
2023 3124 9.442047 AAACTAAAATGTCCAAAATGTGTCAAA 57.558 25.926 0.00 0.00 0.00 2.69
2024 3125 9.612066 AACTAAAATGTCCAAAATGTGTCAAAT 57.388 25.926 0.00 0.00 0.00 2.32
2030 3131 9.775854 AATGTCCAAAATGTGTCAAATAAATCA 57.224 25.926 0.00 0.00 0.00 2.57
2031 3132 9.947433 ATGTCCAAAATGTGTCAAATAAATCAT 57.053 25.926 0.00 0.00 0.00 2.45
2032 3133 9.205719 TGTCCAAAATGTGTCAAATAAATCATG 57.794 29.630 0.00 0.00 0.00 3.07
2033 3134 8.658609 GTCCAAAATGTGTCAAATAAATCATGG 58.341 33.333 0.00 0.00 0.00 3.66
2034 3135 7.823310 TCCAAAATGTGTCAAATAAATCATGGG 59.177 33.333 0.00 0.00 0.00 4.00
2035 3136 7.607223 CCAAAATGTGTCAAATAAATCATGGGT 59.393 33.333 0.00 0.00 0.00 4.51
2036 3137 9.650539 CAAAATGTGTCAAATAAATCATGGGTA 57.349 29.630 0.00 0.00 0.00 3.69
2041 3142 9.693739 TGTGTCAAATAAATCATGGGTAATACT 57.306 29.630 0.00 0.00 0.00 2.12
2049 3150 7.931015 AAATCATGGGTAATACTAGTGGAGA 57.069 36.000 5.39 0.00 0.00 3.71
2050 3151 7.931015 AATCATGGGTAATACTAGTGGAGAA 57.069 36.000 5.39 0.00 0.00 2.87
2051 3152 7.931015 ATCATGGGTAATACTAGTGGAGAAA 57.069 36.000 5.39 0.00 0.00 2.52
2052 3153 7.120923 TCATGGGTAATACTAGTGGAGAAAC 57.879 40.000 5.39 0.00 0.00 2.78
2053 3154 5.945144 TGGGTAATACTAGTGGAGAAACC 57.055 43.478 5.39 4.59 39.54 3.27
2102 3203 8.841300 AGGCTCTAAACTAATTAAAATAGCAGC 58.159 33.333 0.00 0.00 0.00 5.25
2103 3204 8.841300 GGCTCTAAACTAATTAAAATAGCAGCT 58.159 33.333 0.00 0.00 0.00 4.24
2122 3223 8.807667 AGCAGCTATGACAATTAATTAAATGC 57.192 30.769 12.27 6.88 0.00 3.56
2123 3224 7.869429 AGCAGCTATGACAATTAATTAAATGCC 59.131 33.333 12.27 3.25 0.00 4.40
2124 3225 7.869429 GCAGCTATGACAATTAATTAAATGCCT 59.131 33.333 12.27 1.86 0.00 4.75
2125 3226 9.754382 CAGCTATGACAATTAATTAAATGCCTT 57.246 29.630 12.27 3.80 0.00 4.35
2176 3277 8.950208 TTTTAATTAGGTGTCAAACTTTTGGG 57.050 30.769 1.94 0.00 38.66 4.12
2177 3278 5.545063 AATTAGGTGTCAAACTTTTGGGG 57.455 39.130 1.94 0.00 38.66 4.96
2178 3279 1.119684 AGGTGTCAAACTTTTGGGGC 58.880 50.000 1.94 0.00 38.66 5.80
2179 3280 0.827368 GGTGTCAAACTTTTGGGGCA 59.173 50.000 1.94 0.00 38.66 5.36
2180 3281 1.202521 GGTGTCAAACTTTTGGGGCAG 60.203 52.381 1.94 0.00 38.66 4.85
2181 3282 1.480545 GTGTCAAACTTTTGGGGCAGT 59.519 47.619 1.94 0.00 38.66 4.40
2182 3283 2.691011 GTGTCAAACTTTTGGGGCAGTA 59.309 45.455 1.94 0.00 38.66 2.74
2183 3284 2.955660 TGTCAAACTTTTGGGGCAGTAG 59.044 45.455 1.94 0.00 38.66 2.57
2184 3285 3.219281 GTCAAACTTTTGGGGCAGTAGA 58.781 45.455 1.94 0.00 38.66 2.59
2185 3286 3.634910 GTCAAACTTTTGGGGCAGTAGAA 59.365 43.478 1.94 0.00 38.66 2.10
2186 3287 4.280929 GTCAAACTTTTGGGGCAGTAGAAT 59.719 41.667 1.94 0.00 38.66 2.40
2187 3288 5.475564 GTCAAACTTTTGGGGCAGTAGAATA 59.524 40.000 1.94 0.00 38.66 1.75
2188 3289 6.015772 GTCAAACTTTTGGGGCAGTAGAATAA 60.016 38.462 1.94 0.00 38.66 1.40
2189 3290 6.551601 TCAAACTTTTGGGGCAGTAGAATAAA 59.448 34.615 1.94 0.00 38.66 1.40
2190 3291 7.234577 TCAAACTTTTGGGGCAGTAGAATAAAT 59.765 33.333 1.94 0.00 38.66 1.40
2191 3292 7.553504 AACTTTTGGGGCAGTAGAATAAATT 57.446 32.000 0.00 0.00 0.00 1.82
2192 3293 8.658840 AACTTTTGGGGCAGTAGAATAAATTA 57.341 30.769 0.00 0.00 0.00 1.40
2193 3294 8.838649 ACTTTTGGGGCAGTAGAATAAATTAT 57.161 30.769 0.00 0.00 0.00 1.28
2194 3295 9.930158 ACTTTTGGGGCAGTAGAATAAATTATA 57.070 29.630 0.00 0.00 0.00 0.98
2197 3298 9.702253 TTTGGGGCAGTAGAATAAATTATAACA 57.298 29.630 0.00 0.00 0.00 2.41
2198 3299 9.875708 TTGGGGCAGTAGAATAAATTATAACAT 57.124 29.630 0.00 0.00 0.00 2.71
2199 3300 9.875708 TGGGGCAGTAGAATAAATTATAACATT 57.124 29.630 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.751437 GCTTAGCCCCGTTCATCTTT 58.249 50.000 0.00 0.00 0.00 2.52
81 82 3.520317 ACCAATGCATTTTGACATCCCAT 59.480 39.130 9.83 0.00 0.00 4.00
191 192 4.410099 GGGGCATTGGATTCTCATCAATA 58.590 43.478 0.00 0.00 0.00 1.90
196 197 0.846015 TCGGGGCATTGGATTCTCAT 59.154 50.000 0.00 0.00 0.00 2.90
301 302 8.253541 AGGGGTAGTATAGGAATATTGACCTA 57.746 38.462 5.60 5.60 41.99 3.08
363 364 9.239551 GTGTCCTTAAACCTATAACCATCTTTT 57.760 33.333 0.00 0.00 0.00 2.27
643 645 4.580835 GAGAGTTGTCTCGTGCCC 57.419 61.111 0.00 0.00 44.65 5.36
712 714 3.680786 GCGGCCCCCTTTTGTGAC 61.681 66.667 0.00 0.00 0.00 3.67
737 739 3.154584 TAAATAGTCGCCCGGGCCG 62.155 63.158 39.24 31.53 37.98 6.13
751 753 4.277423 CGGAGACCTGTGTTTTTGGTAAAT 59.723 41.667 0.00 0.00 33.74 1.40
828 830 3.748568 GTCATCAGTTCACCAACTTCCTC 59.251 47.826 0.00 0.00 41.24 3.71
908 910 4.261801 ACCCGACAAGGAATTTCACTATG 58.738 43.478 0.00 0.00 45.00 2.23
909 911 4.569719 ACCCGACAAGGAATTTCACTAT 57.430 40.909 0.00 0.00 45.00 2.12
913 915 4.360951 ACTTACCCGACAAGGAATTTCA 57.639 40.909 0.00 0.00 45.00 2.69
959 961 1.153489 CCGAGACAGTGCCCAGATG 60.153 63.158 0.00 0.00 0.00 2.90
989 991 7.012138 GCATCTTCACAGACATGTCTATTTCAT 59.988 37.037 27.44 12.60 37.65 2.57
1085 1087 1.144057 CCACCTAAGCTACGCAGGG 59.856 63.158 8.09 0.00 33.48 4.45
1092 2158 1.480954 CTTCGCCTTCCACCTAAGCTA 59.519 52.381 0.00 0.00 0.00 3.32
1221 2287 3.634504 TGCCTACGACCCATAGAAACTA 58.365 45.455 0.00 0.00 0.00 2.24
1234 2300 0.988832 ACCTTTTGGGATGCCTACGA 59.011 50.000 4.35 0.00 46.08 3.43
1242 2308 2.618045 CGCCTCTGTTACCTTTTGGGAT 60.618 50.000 0.00 0.00 46.08 3.85
1386 2452 4.660938 GTGGCGGCCCTTCCACTT 62.661 66.667 22.42 0.00 46.90 3.16
1400 2466 5.721232 AGAGTAACTTTATCCGTTGAGTGG 58.279 41.667 0.00 0.00 0.00 4.00
1402 2468 6.096564 CCCTAGAGTAACTTTATCCGTTGAGT 59.903 42.308 0.00 0.00 0.00 3.41
1518 2585 1.843851 TGTTCTGAACCCAGGTCACTT 59.156 47.619 17.26 0.00 40.76 3.16
1519 2586 1.507140 TGTTCTGAACCCAGGTCACT 58.493 50.000 17.26 0.00 40.76 3.41
1520 2587 2.427506 GATGTTCTGAACCCAGGTCAC 58.572 52.381 17.26 0.00 40.76 3.67
1521 2588 1.001974 CGATGTTCTGAACCCAGGTCA 59.998 52.381 17.26 0.00 40.76 4.02
1522 2589 1.002087 ACGATGTTCTGAACCCAGGTC 59.998 52.381 17.26 7.30 40.76 3.85
1523 2590 1.056660 ACGATGTTCTGAACCCAGGT 58.943 50.000 17.26 7.72 40.76 4.00
1524 2591 1.001974 TCACGATGTTCTGAACCCAGG 59.998 52.381 17.26 7.15 40.76 4.45
1538 2639 0.526662 GGACCGAACTGTCTCACGAT 59.473 55.000 0.00 0.00 35.54 3.73
1563 2664 1.064003 ATGCTCTAACACCCACACCA 58.936 50.000 0.00 0.00 0.00 4.17
1572 2673 3.445008 AGGTCCTCTCAATGCTCTAACA 58.555 45.455 0.00 0.00 0.00 2.41
1768 2869 3.506096 CCGTCGCTGTCTCGGCTA 61.506 66.667 0.00 0.00 37.90 3.93
1830 2931 0.953003 GTCTCGCCGCTACCTTATCT 59.047 55.000 0.00 0.00 0.00 1.98
1853 2954 1.754803 CCTAACTATCTGGGCGTCACA 59.245 52.381 0.00 0.00 0.00 3.58
1854 2955 1.538419 GCCTAACTATCTGGGCGTCAC 60.538 57.143 0.00 0.00 35.08 3.67
1855 2956 0.750850 GCCTAACTATCTGGGCGTCA 59.249 55.000 0.00 0.00 35.08 4.35
1856 2957 3.590127 GCCTAACTATCTGGGCGTC 57.410 57.895 0.00 0.00 35.08 5.19
1859 2960 2.966516 ACTGTAGCCTAACTATCTGGGC 59.033 50.000 0.00 0.00 44.38 5.36
1860 2961 6.726490 TTTACTGTAGCCTAACTATCTGGG 57.274 41.667 0.00 0.00 32.15 4.45
1861 2962 6.985059 GGTTTTACTGTAGCCTAACTATCTGG 59.015 42.308 0.00 0.00 32.15 3.86
1862 2963 6.985059 GGGTTTTACTGTAGCCTAACTATCTG 59.015 42.308 0.00 0.00 32.15 2.90
1863 2964 6.901857 AGGGTTTTACTGTAGCCTAACTATCT 59.098 38.462 0.00 0.00 40.32 1.98
1864 2965 6.985059 CAGGGTTTTACTGTAGCCTAACTATC 59.015 42.308 0.00 0.00 40.14 2.08
1865 2966 6.631992 GCAGGGTTTTACTGTAGCCTAACTAT 60.632 42.308 0.00 0.00 40.14 2.12
1866 2967 5.337813 GCAGGGTTTTACTGTAGCCTAACTA 60.338 44.000 0.00 0.00 40.14 2.24
1867 2968 4.565028 GCAGGGTTTTACTGTAGCCTAACT 60.565 45.833 0.00 0.00 40.14 2.24
1868 2969 3.688185 GCAGGGTTTTACTGTAGCCTAAC 59.312 47.826 0.00 0.00 40.14 2.34
1869 2970 3.585732 AGCAGGGTTTTACTGTAGCCTAA 59.414 43.478 0.00 0.00 40.14 2.69
1870 2971 3.178865 AGCAGGGTTTTACTGTAGCCTA 58.821 45.455 0.00 0.00 40.14 3.93
1871 2972 1.985895 AGCAGGGTTTTACTGTAGCCT 59.014 47.619 0.00 0.00 42.74 4.58
1872 2973 2.491675 AGCAGGGTTTTACTGTAGCC 57.508 50.000 0.00 0.00 38.22 3.93
1873 2974 5.183228 TCATTAGCAGGGTTTTACTGTAGC 58.817 41.667 0.00 0.00 38.22 3.58
1874 2975 6.238484 GCATCATTAGCAGGGTTTTACTGTAG 60.238 42.308 0.00 0.00 38.22 2.74
1875 2976 5.588648 GCATCATTAGCAGGGTTTTACTGTA 59.411 40.000 0.00 0.00 38.22 2.74
1876 2977 4.399303 GCATCATTAGCAGGGTTTTACTGT 59.601 41.667 0.00 0.00 38.22 3.55
1877 2978 4.202050 GGCATCATTAGCAGGGTTTTACTG 60.202 45.833 0.00 0.00 38.95 2.74
1878 2979 3.954258 GGCATCATTAGCAGGGTTTTACT 59.046 43.478 0.00 0.00 0.00 2.24
1879 2980 3.954258 AGGCATCATTAGCAGGGTTTTAC 59.046 43.478 0.00 0.00 0.00 2.01
1880 2981 4.249638 AGGCATCATTAGCAGGGTTTTA 57.750 40.909 0.00 0.00 0.00 1.52
1881 2982 3.105959 AGGCATCATTAGCAGGGTTTT 57.894 42.857 0.00 0.00 0.00 2.43
1882 2983 2.762327 CAAGGCATCATTAGCAGGGTTT 59.238 45.455 0.00 0.00 0.00 3.27
1883 2984 2.291800 ACAAGGCATCATTAGCAGGGTT 60.292 45.455 0.00 0.00 0.00 4.11
1884 2985 1.285962 ACAAGGCATCATTAGCAGGGT 59.714 47.619 0.00 0.00 0.00 4.34
1885 2986 1.952296 GACAAGGCATCATTAGCAGGG 59.048 52.381 0.00 0.00 0.00 4.45
1886 2987 2.357009 GTGACAAGGCATCATTAGCAGG 59.643 50.000 0.00 0.00 0.00 4.85
1887 2988 2.357009 GGTGACAAGGCATCATTAGCAG 59.643 50.000 0.00 0.00 0.00 4.24
1888 2989 2.368439 GGTGACAAGGCATCATTAGCA 58.632 47.619 0.00 0.00 0.00 3.49
1889 2990 1.678101 GGGTGACAAGGCATCATTAGC 59.322 52.381 0.00 0.00 0.00 3.09
1890 2991 3.287867 AGGGTGACAAGGCATCATTAG 57.712 47.619 0.00 0.00 0.00 1.73
1891 2992 3.010027 TCAAGGGTGACAAGGCATCATTA 59.990 43.478 0.00 0.00 0.00 1.90
1892 2993 2.173519 CAAGGGTGACAAGGCATCATT 58.826 47.619 0.00 0.00 0.00 2.57
1893 2994 1.355381 TCAAGGGTGACAAGGCATCAT 59.645 47.619 0.00 0.00 0.00 2.45
1894 2995 0.770499 TCAAGGGTGACAAGGCATCA 59.230 50.000 0.00 0.00 0.00 3.07
1895 2996 3.650647 TCAAGGGTGACAAGGCATC 57.349 52.632 0.00 0.00 0.00 3.91
1904 3005 4.901197 TTAGCAATAGTGTCAAGGGTGA 57.099 40.909 0.00 0.00 0.00 4.02
1905 3006 4.759693 TGTTTAGCAATAGTGTCAAGGGTG 59.240 41.667 0.00 0.00 0.00 4.61
1906 3007 4.760204 GTGTTTAGCAATAGTGTCAAGGGT 59.240 41.667 0.00 0.00 0.00 4.34
1907 3008 4.759693 TGTGTTTAGCAATAGTGTCAAGGG 59.240 41.667 0.00 0.00 0.00 3.95
1908 3009 5.940192 TGTGTTTAGCAATAGTGTCAAGG 57.060 39.130 0.00 0.00 0.00 3.61
1909 3010 6.902341 ACATGTGTTTAGCAATAGTGTCAAG 58.098 36.000 0.00 0.00 0.00 3.02
1910 3011 6.875948 ACATGTGTTTAGCAATAGTGTCAA 57.124 33.333 0.00 0.00 0.00 3.18
1911 3012 6.875948 AACATGTGTTTAGCAATAGTGTCA 57.124 33.333 0.00 0.00 33.93 3.58
1912 3013 8.251750 TCTAACATGTGTTTAGCAATAGTGTC 57.748 34.615 0.00 0.00 39.31 3.67
1913 3014 8.792830 ATCTAACATGTGTTTAGCAATAGTGT 57.207 30.769 0.00 0.00 39.31 3.55
1914 3015 8.882736 TGATCTAACATGTGTTTAGCAATAGTG 58.117 33.333 0.00 0.00 39.31 2.74
1915 3016 9.448438 TTGATCTAACATGTGTTTAGCAATAGT 57.552 29.630 0.00 0.00 39.31 2.12
1918 3019 9.410556 GTTTTGATCTAACATGTGTTTAGCAAT 57.589 29.630 0.00 0.00 39.31 3.56
1919 3020 8.409371 TGTTTTGATCTAACATGTGTTTAGCAA 58.591 29.630 0.00 5.78 39.31 3.91
1920 3021 7.935520 TGTTTTGATCTAACATGTGTTTAGCA 58.064 30.769 0.00 0.00 39.31 3.49
1921 3022 8.970691 ATGTTTTGATCTAACATGTGTTTAGC 57.029 30.769 19.37 0.00 42.82 3.09
1924 3025 9.814899 TGAAATGTTTTGATCTAACATGTGTTT 57.185 25.926 20.23 14.25 43.44 2.83
1925 3026 9.814899 TTGAAATGTTTTGATCTAACATGTGTT 57.185 25.926 20.23 14.01 43.44 3.32
1926 3027 9.814899 TTTGAAATGTTTTGATCTAACATGTGT 57.185 25.926 20.23 12.59 43.44 3.72
1946 3047 8.502387 CGCCTAAATCCAAATTTGATTTTGAAA 58.498 29.630 19.86 7.57 38.58 2.69
1947 3048 7.875041 TCGCCTAAATCCAAATTTGATTTTGAA 59.125 29.630 19.86 7.85 38.58 2.69
1948 3049 7.382110 TCGCCTAAATCCAAATTTGATTTTGA 58.618 30.769 19.86 8.05 38.58 2.69
1949 3050 7.593875 TCGCCTAAATCCAAATTTGATTTTG 57.406 32.000 19.86 19.09 35.84 2.44
1950 3051 7.659390 TGTTCGCCTAAATCCAAATTTGATTTT 59.341 29.630 19.86 18.09 35.84 1.82
1951 3052 7.158021 TGTTCGCCTAAATCCAAATTTGATTT 58.842 30.769 19.86 20.90 35.84 2.17
1952 3053 6.696411 TGTTCGCCTAAATCCAAATTTGATT 58.304 32.000 19.86 13.34 35.84 2.57
1953 3054 6.279513 TGTTCGCCTAAATCCAAATTTGAT 57.720 33.333 19.86 8.30 35.84 2.57
1954 3055 5.713792 TGTTCGCCTAAATCCAAATTTGA 57.286 34.783 19.86 6.29 35.84 2.69
1955 3056 5.694006 TGTTGTTCGCCTAAATCCAAATTTG 59.306 36.000 11.40 11.40 35.84 2.32
1956 3057 5.848406 TGTTGTTCGCCTAAATCCAAATTT 58.152 33.333 0.00 0.00 38.61 1.82
1957 3058 5.461032 TGTTGTTCGCCTAAATCCAAATT 57.539 34.783 0.00 0.00 0.00 1.82
1958 3059 5.461032 TTGTTGTTCGCCTAAATCCAAAT 57.539 34.783 0.00 0.00 0.00 2.32
1959 3060 4.920640 TTGTTGTTCGCCTAAATCCAAA 57.079 36.364 0.00 0.00 0.00 3.28
1960 3061 4.920640 TTTGTTGTTCGCCTAAATCCAA 57.079 36.364 0.00 0.00 0.00 3.53
1961 3062 4.339814 ACTTTTGTTGTTCGCCTAAATCCA 59.660 37.500 0.00 0.00 0.00 3.41
1962 3063 4.866921 ACTTTTGTTGTTCGCCTAAATCC 58.133 39.130 0.00 0.00 0.00 3.01
1963 3064 6.822073 AAACTTTTGTTGTTCGCCTAAATC 57.178 33.333 0.00 0.00 42.67 2.17
1964 3065 6.814146 TGAAAACTTTTGTTGTTCGCCTAAAT 59.186 30.769 0.00 0.00 42.67 1.40
1965 3066 6.157211 TGAAAACTTTTGTTGTTCGCCTAAA 58.843 32.000 0.00 0.00 42.67 1.85
1966 3067 5.710984 TGAAAACTTTTGTTGTTCGCCTAA 58.289 33.333 0.00 0.00 42.67 2.69
1967 3068 5.312120 TGAAAACTTTTGTTGTTCGCCTA 57.688 34.783 0.00 0.00 42.67 3.93
1968 3069 4.181309 TGAAAACTTTTGTTGTTCGCCT 57.819 36.364 0.00 0.00 42.67 5.52
1969 3070 4.912528 TTGAAAACTTTTGTTGTTCGCC 57.087 36.364 0.00 0.00 42.67 5.54
1970 3071 5.671074 TGTTTGAAAACTTTTGTTGTTCGC 58.329 33.333 7.39 0.00 42.67 4.70
1971 3072 9.798885 TTAATGTTTGAAAACTTTTGTTGTTCG 57.201 25.926 11.01 0.00 42.67 3.95
1996 3097 9.442047 TTGACACATTTTGGACATTTTAGTTTT 57.558 25.926 0.00 0.00 0.00 2.43
1997 3098 9.442047 TTTGACACATTTTGGACATTTTAGTTT 57.558 25.926 0.00 0.00 0.00 2.66
1998 3099 9.612066 ATTTGACACATTTTGGACATTTTAGTT 57.388 25.926 0.00 0.00 0.00 2.24
2004 3105 9.775854 TGATTTATTTGACACATTTTGGACATT 57.224 25.926 0.00 0.00 0.00 2.71
2005 3106 9.947433 ATGATTTATTTGACACATTTTGGACAT 57.053 25.926 0.00 0.00 0.00 3.06
2006 3107 9.205719 CATGATTTATTTGACACATTTTGGACA 57.794 29.630 0.00 0.00 0.00 4.02
2007 3108 8.658609 CCATGATTTATTTGACACATTTTGGAC 58.341 33.333 0.00 0.00 0.00 4.02
2008 3109 7.823310 CCCATGATTTATTTGACACATTTTGGA 59.177 33.333 0.00 0.00 0.00 3.53
2009 3110 7.607223 ACCCATGATTTATTTGACACATTTTGG 59.393 33.333 0.00 0.00 0.00 3.28
2010 3111 8.550710 ACCCATGATTTATTTGACACATTTTG 57.449 30.769 0.00 0.00 0.00 2.44
2015 3116 9.693739 AGTATTACCCATGATTTATTTGACACA 57.306 29.630 0.00 0.00 0.00 3.72
2023 3124 9.615660 TCTCCACTAGTATTACCCATGATTTAT 57.384 33.333 0.00 0.00 0.00 1.40
2024 3125 9.442062 TTCTCCACTAGTATTACCCATGATTTA 57.558 33.333 0.00 0.00 0.00 1.40
2025 3126 7.931015 TCTCCACTAGTATTACCCATGATTT 57.069 36.000 0.00 0.00 0.00 2.17
2026 3127 7.931015 TTCTCCACTAGTATTACCCATGATT 57.069 36.000 0.00 0.00 0.00 2.57
2027 3128 7.202102 GGTTTCTCCACTAGTATTACCCATGAT 60.202 40.741 0.00 0.00 35.97 2.45
2028 3129 6.099269 GGTTTCTCCACTAGTATTACCCATGA 59.901 42.308 0.00 0.00 35.97 3.07
2029 3130 6.126883 TGGTTTCTCCACTAGTATTACCCATG 60.127 42.308 0.00 0.00 41.93 3.66
2030 3131 5.968167 TGGTTTCTCCACTAGTATTACCCAT 59.032 40.000 0.00 0.00 41.93 4.00
2031 3132 5.343715 TGGTTTCTCCACTAGTATTACCCA 58.656 41.667 0.00 0.00 41.93 4.51
2032 3133 5.945144 TGGTTTCTCCACTAGTATTACCC 57.055 43.478 0.00 0.00 41.93 3.69
2076 3177 8.841300 GCTGCTATTTTAATTAGTTTAGAGCCT 58.159 33.333 0.00 0.00 0.00 4.58
2077 3178 8.841300 AGCTGCTATTTTAATTAGTTTAGAGCC 58.159 33.333 0.00 0.00 0.00 4.70
2096 3197 9.897744 GCATTTAATTAATTGTCATAGCTGCTA 57.102 29.630 12.40 12.40 0.00 3.49
2097 3198 7.869429 GGCATTTAATTAATTGTCATAGCTGCT 59.131 33.333 16.13 7.57 0.00 4.24
2098 3199 7.869429 AGGCATTTAATTAATTGTCATAGCTGC 59.131 33.333 20.77 7.93 0.00 5.25
2099 3200 9.754382 AAGGCATTTAATTAATTGTCATAGCTG 57.246 29.630 20.77 0.00 0.00 4.24
2150 3251 9.554395 CCCAAAAGTTTGACACCTAATTAAAAT 57.446 29.630 5.34 0.00 40.55 1.82
2151 3252 7.988028 CCCCAAAAGTTTGACACCTAATTAAAA 59.012 33.333 5.34 0.00 40.55 1.52
2152 3253 7.501844 CCCCAAAAGTTTGACACCTAATTAAA 58.498 34.615 5.34 0.00 40.55 1.52
2153 3254 6.463190 GCCCCAAAAGTTTGACACCTAATTAA 60.463 38.462 5.34 0.00 40.55 1.40
2154 3255 5.011227 GCCCCAAAAGTTTGACACCTAATTA 59.989 40.000 5.34 0.00 40.55 1.40
2155 3256 4.202315 GCCCCAAAAGTTTGACACCTAATT 60.202 41.667 5.34 0.00 40.55 1.40
2156 3257 3.323691 GCCCCAAAAGTTTGACACCTAAT 59.676 43.478 5.34 0.00 40.55 1.73
2157 3258 2.696187 GCCCCAAAAGTTTGACACCTAA 59.304 45.455 5.34 0.00 40.55 2.69
2158 3259 2.312390 GCCCCAAAAGTTTGACACCTA 58.688 47.619 5.34 0.00 40.55 3.08
2159 3260 1.119684 GCCCCAAAAGTTTGACACCT 58.880 50.000 5.34 0.00 40.55 4.00
2160 3261 0.827368 TGCCCCAAAAGTTTGACACC 59.173 50.000 5.34 0.00 40.55 4.16
2161 3262 1.480545 ACTGCCCCAAAAGTTTGACAC 59.519 47.619 5.34 0.00 40.55 3.67
2162 3263 1.859302 ACTGCCCCAAAAGTTTGACA 58.141 45.000 5.34 0.78 40.55 3.58
2163 3264 3.219281 TCTACTGCCCCAAAAGTTTGAC 58.781 45.455 5.34 0.00 40.55 3.18
2164 3265 3.586470 TCTACTGCCCCAAAAGTTTGA 57.414 42.857 5.34 0.00 40.55 2.69
2165 3266 4.871933 ATTCTACTGCCCCAAAAGTTTG 57.128 40.909 0.00 0.00 37.90 2.93
2166 3267 6.987403 TTTATTCTACTGCCCCAAAAGTTT 57.013 33.333 0.00 0.00 0.00 2.66
2167 3268 7.553504 AATTTATTCTACTGCCCCAAAAGTT 57.446 32.000 0.00 0.00 0.00 2.66
2168 3269 8.838649 ATAATTTATTCTACTGCCCCAAAAGT 57.161 30.769 0.00 0.00 0.00 2.66
2171 3272 9.702253 TGTTATAATTTATTCTACTGCCCCAAA 57.298 29.630 0.00 0.00 0.00 3.28
2172 3273 9.875708 ATGTTATAATTTATTCTACTGCCCCAA 57.124 29.630 0.00 0.00 0.00 4.12
2173 3274 9.875708 AATGTTATAATTTATTCTACTGCCCCA 57.124 29.630 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.