Multiple sequence alignment - TraesCS2A01G240100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G240100 chr2A 100.000 2111 0 0 1 2111 334596319 334594209 0.000000e+00 3899.0
1 TraesCS2A01G240100 chr1D 98.131 1177 17 4 424 1599 254417227 254418399 0.000000e+00 2047.0
2 TraesCS2A01G240100 chr1D 96.796 1186 25 4 424 1599 51877912 51876730 0.000000e+00 1967.0
3 TraesCS2A01G240100 chr1A 97.881 1180 18 7 424 1599 554458629 554459805 0.000000e+00 2034.0
4 TraesCS2A01G240100 chr2B 97.371 1179 20 8 424 1599 474900504 474901674 0.000000e+00 1995.0
5 TraesCS2A01G240100 chr2B 95.294 85 3 1 1 84 326677461 326677545 1.310000e-27 134.0
6 TraesCS2A01G240100 chr2B 97.059 34 1 0 2047 2080 26578951 26578984 8.140000e-05 58.4
7 TraesCS2A01G240100 chr6D 97.222 1188 14 7 424 1599 45511409 45510229 0.000000e+00 1993.0
8 TraesCS2A01G240100 chr5D 96.627 1186 24 6 424 1599 120800032 120801211 0.000000e+00 1954.0
9 TraesCS2A01G240100 chr5D 96.380 1188 19 11 424 1599 6180784 6179609 0.000000e+00 1934.0
10 TraesCS2A01G240100 chr5A 96.670 1171 30 7 424 1593 607199929 607198767 0.000000e+00 1938.0
11 TraesCS2A01G240100 chr7B 94.643 1176 53 6 424 1599 105256435 105255270 0.000000e+00 1814.0
12 TraesCS2A01G240100 chr4D 94.309 492 25 2 1597 2088 465058868 465058380 0.000000e+00 750.0
13 TraesCS2A01G240100 chr4D 91.743 218 18 0 206 423 465059092 465058875 9.460000e-79 303.0
14 TraesCS2A01G240100 chr4D 91.453 117 6 4 84 196 465063397 465063281 7.800000e-35 158.0
15 TraesCS2A01G240100 chr2D 99.022 409 3 1 1597 2005 280653716 280653309 0.000000e+00 732.0
16 TraesCS2A01G240100 chr2D 96.000 425 9 3 1 423 280654141 280653723 0.000000e+00 684.0
17 TraesCS2A01G240100 chr2D 96.296 81 3 0 2031 2111 280653313 280653233 1.310000e-27 134.0
18 TraesCS2A01G240100 chr3A 90.505 495 33 6 1597 2090 684591508 684591989 1.770000e-180 641.0
19 TraesCS2A01G240100 chr3A 83.383 337 31 12 92 423 684591185 684591501 2.650000e-74 289.0
20 TraesCS2A01G240100 chr6B 85.016 307 41 3 1695 2001 135870568 135870267 7.320000e-80 307.0
21 TraesCS2A01G240100 chr6B 93.750 48 2 1 2042 2088 135870132 135870085 1.040000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G240100 chr2A 334594209 334596319 2110 True 3899.000000 3899 100.000 1 2111 1 chr2A.!!$R1 2110
1 TraesCS2A01G240100 chr1D 254417227 254418399 1172 False 2047.000000 2047 98.131 424 1599 1 chr1D.!!$F1 1175
2 TraesCS2A01G240100 chr1D 51876730 51877912 1182 True 1967.000000 1967 96.796 424 1599 1 chr1D.!!$R1 1175
3 TraesCS2A01G240100 chr1A 554458629 554459805 1176 False 2034.000000 2034 97.881 424 1599 1 chr1A.!!$F1 1175
4 TraesCS2A01G240100 chr2B 474900504 474901674 1170 False 1995.000000 1995 97.371 424 1599 1 chr2B.!!$F3 1175
5 TraesCS2A01G240100 chr6D 45510229 45511409 1180 True 1993.000000 1993 97.222 424 1599 1 chr6D.!!$R1 1175
6 TraesCS2A01G240100 chr5D 120800032 120801211 1179 False 1954.000000 1954 96.627 424 1599 1 chr5D.!!$F1 1175
7 TraesCS2A01G240100 chr5D 6179609 6180784 1175 True 1934.000000 1934 96.380 424 1599 1 chr5D.!!$R1 1175
8 TraesCS2A01G240100 chr5A 607198767 607199929 1162 True 1938.000000 1938 96.670 424 1593 1 chr5A.!!$R1 1169
9 TraesCS2A01G240100 chr7B 105255270 105256435 1165 True 1814.000000 1814 94.643 424 1599 1 chr7B.!!$R1 1175
10 TraesCS2A01G240100 chr4D 465058380 465059092 712 True 526.500000 750 93.026 206 2088 2 chr4D.!!$R2 1882
11 TraesCS2A01G240100 chr2D 280653233 280654141 908 True 516.666667 732 97.106 1 2111 3 chr2D.!!$R1 2110
12 TraesCS2A01G240100 chr3A 684591185 684591989 804 False 465.000000 641 86.944 92 2090 2 chr3A.!!$F1 1998

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 268 0.179097 CTAGTCTTCCTTGGAGGCGC 60.179 60.0 0.0 0.0 34.61 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1670 1825 0.038526 TCGGAGAAGAAAGACGCCAC 60.039 55.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 2.119495 AGGAGACACAAGTTGGTCACT 58.881 47.619 19.93 15.71 37.30 3.41
266 268 0.179097 CTAGTCTTCCTTGGAGGCGC 60.179 60.000 0.00 0.00 34.61 6.53
838 920 5.426509 ACAATACCTAACCACCTAACCCTAC 59.573 44.000 0.00 0.00 0.00 3.18
862 944 7.756558 ACTTTTGCTATTGATAAGAGTGCTTC 58.243 34.615 0.00 0.00 35.56 3.86
1192 1336 4.532126 GGGGGTCAGAATTCTTTCCAATTT 59.468 41.667 20.53 0.00 31.84 1.82
1606 1761 4.442018 AAAAACGCTTCCCGACGA 57.558 50.000 0.00 0.00 41.02 4.20
1607 1762 2.231820 AAAAACGCTTCCCGACGAG 58.768 52.632 0.00 0.00 41.02 4.18
1608 1763 1.226030 AAAAACGCTTCCCGACGAGG 61.226 55.000 0.00 0.00 41.02 4.63
1609 1764 2.091102 AAAACGCTTCCCGACGAGGA 62.091 55.000 0.00 0.00 45.00 3.71
1610 1765 2.760387 AAACGCTTCCCGACGAGGAC 62.760 60.000 0.00 0.00 45.00 3.85
1611 1766 4.831307 CGCTTCCCGACGAGGACG 62.831 72.222 0.00 0.35 45.00 4.79
1625 1780 4.880760 CGAGGACGTTGTTTAGTACAAG 57.119 45.455 0.00 0.00 46.95 3.16
1632 1787 5.978934 CGTTGTTTAGTACAAGGTCTGTT 57.021 39.130 0.00 0.00 46.95 3.16
1633 1788 5.734311 CGTTGTTTAGTACAAGGTCTGTTG 58.266 41.667 0.00 0.00 46.95 3.33
1634 1789 5.507974 GTTGTTTAGTACAAGGTCTGTTGC 58.492 41.667 0.00 0.00 46.95 4.17
1635 1790 5.031066 TGTTTAGTACAAGGTCTGTTGCT 57.969 39.130 0.00 0.00 39.64 3.91
1636 1791 4.814234 TGTTTAGTACAAGGTCTGTTGCTG 59.186 41.667 0.00 0.00 39.64 4.41
1637 1792 4.682778 TTAGTACAAGGTCTGTTGCTGT 57.317 40.909 0.00 0.00 39.64 4.40
1638 1793 3.560636 AGTACAAGGTCTGTTGCTGTT 57.439 42.857 0.00 0.00 39.64 3.16
1639 1794 3.467803 AGTACAAGGTCTGTTGCTGTTC 58.532 45.455 0.00 0.00 39.64 3.18
1640 1795 2.717639 ACAAGGTCTGTTGCTGTTCT 57.282 45.000 0.00 0.00 32.99 3.01
1641 1796 2.292267 ACAAGGTCTGTTGCTGTTCTG 58.708 47.619 0.00 0.00 32.99 3.02
1642 1797 1.605710 CAAGGTCTGTTGCTGTTCTGG 59.394 52.381 0.00 0.00 0.00 3.86
1643 1798 1.131638 AGGTCTGTTGCTGTTCTGGA 58.868 50.000 0.00 0.00 0.00 3.86
1644 1799 1.071385 AGGTCTGTTGCTGTTCTGGAG 59.929 52.381 0.00 0.00 0.00 3.86
1645 1800 0.871057 GTCTGTTGCTGTTCTGGAGC 59.129 55.000 0.00 0.00 36.95 4.70
1646 1801 0.469494 TCTGTTGCTGTTCTGGAGCA 59.531 50.000 0.00 0.00 44.75 4.26
1647 1802 1.072806 TCTGTTGCTGTTCTGGAGCAT 59.927 47.619 0.00 0.00 45.69 3.79
1648 1803 1.199327 CTGTTGCTGTTCTGGAGCATG 59.801 52.381 0.00 0.00 45.69 4.06
1649 1804 1.242076 GTTGCTGTTCTGGAGCATGT 58.758 50.000 0.00 0.00 45.69 3.21
1650 1805 1.068748 GTTGCTGTTCTGGAGCATGTG 60.069 52.381 0.00 0.00 45.69 3.21
1651 1806 0.397564 TGCTGTTCTGGAGCATGTGA 59.602 50.000 0.00 0.00 41.56 3.58
1652 1807 1.003928 TGCTGTTCTGGAGCATGTGAT 59.996 47.619 0.00 0.00 41.56 3.06
1653 1808 1.400846 GCTGTTCTGGAGCATGTGATG 59.599 52.381 0.00 0.00 36.40 3.07
1654 1809 2.708051 CTGTTCTGGAGCATGTGATGT 58.292 47.619 0.00 0.00 0.00 3.06
1655 1810 2.418976 CTGTTCTGGAGCATGTGATGTG 59.581 50.000 0.00 0.00 0.00 3.21
1656 1811 1.741706 GTTCTGGAGCATGTGATGTGG 59.258 52.381 0.00 0.00 0.00 4.17
1657 1812 1.278537 TCTGGAGCATGTGATGTGGA 58.721 50.000 0.00 0.00 0.00 4.02
1658 1813 1.841919 TCTGGAGCATGTGATGTGGAT 59.158 47.619 0.00 0.00 0.00 3.41
1659 1814 1.947456 CTGGAGCATGTGATGTGGATG 59.053 52.381 0.00 0.00 0.00 3.51
1660 1815 1.315690 GGAGCATGTGATGTGGATGG 58.684 55.000 0.00 0.00 0.00 3.51
1661 1816 1.409241 GGAGCATGTGATGTGGATGGT 60.409 52.381 0.00 0.00 0.00 3.55
1662 1817 1.674441 GAGCATGTGATGTGGATGGTG 59.326 52.381 0.00 0.00 0.00 4.17
1663 1818 0.742505 GCATGTGATGTGGATGGTGG 59.257 55.000 0.00 0.00 0.00 4.61
1664 1819 1.956636 GCATGTGATGTGGATGGTGGT 60.957 52.381 0.00 0.00 0.00 4.16
1665 1820 2.449464 CATGTGATGTGGATGGTGGTT 58.551 47.619 0.00 0.00 0.00 3.67
1666 1821 2.673775 TGTGATGTGGATGGTGGTTT 57.326 45.000 0.00 0.00 0.00 3.27
1667 1822 2.237643 TGTGATGTGGATGGTGGTTTG 58.762 47.619 0.00 0.00 0.00 2.93
1668 1823 1.067635 GTGATGTGGATGGTGGTTTGC 60.068 52.381 0.00 0.00 0.00 3.68
1669 1824 0.171007 GATGTGGATGGTGGTTTGCG 59.829 55.000 0.00 0.00 0.00 4.85
1670 1825 1.250154 ATGTGGATGGTGGTTTGCGG 61.250 55.000 0.00 0.00 0.00 5.69
1671 1826 1.901464 GTGGATGGTGGTTTGCGGT 60.901 57.895 0.00 0.00 0.00 5.68
1672 1827 1.900981 TGGATGGTGGTTTGCGGTG 60.901 57.895 0.00 0.00 0.00 4.94
1673 1828 2.635443 GGATGGTGGTTTGCGGTGG 61.635 63.158 0.00 0.00 0.00 4.61
1674 1829 3.281359 GATGGTGGTTTGCGGTGGC 62.281 63.158 0.00 0.00 40.52 5.01
1677 1832 4.322385 GTGGTTTGCGGTGGCGTC 62.322 66.667 0.00 0.00 44.10 5.19
1678 1833 4.555709 TGGTTTGCGGTGGCGTCT 62.556 61.111 0.00 0.00 44.10 4.18
1679 1834 3.284449 GGTTTGCGGTGGCGTCTT 61.284 61.111 0.00 0.00 44.10 3.01
1680 1835 2.719354 GTTTGCGGTGGCGTCTTT 59.281 55.556 0.00 0.00 44.10 2.52
1681 1836 1.370051 GTTTGCGGTGGCGTCTTTC 60.370 57.895 0.00 0.00 44.10 2.62
1682 1837 1.525077 TTTGCGGTGGCGTCTTTCT 60.525 52.632 0.00 0.00 44.10 2.52
1683 1838 1.098712 TTTGCGGTGGCGTCTTTCTT 61.099 50.000 0.00 0.00 44.10 2.52
1684 1839 1.503818 TTGCGGTGGCGTCTTTCTTC 61.504 55.000 0.00 0.00 44.10 2.87
1685 1840 1.668151 GCGGTGGCGTCTTTCTTCT 60.668 57.895 0.00 0.00 0.00 2.85
1686 1841 1.627550 GCGGTGGCGTCTTTCTTCTC 61.628 60.000 0.00 0.00 0.00 2.87
1687 1842 1.014564 CGGTGGCGTCTTTCTTCTCC 61.015 60.000 0.00 0.00 0.00 3.71
1688 1843 1.014564 GGTGGCGTCTTTCTTCTCCG 61.015 60.000 0.00 0.00 0.00 4.63
1689 1844 0.038526 GTGGCGTCTTTCTTCTCCGA 60.039 55.000 0.00 0.00 0.00 4.55
1690 1845 0.895530 TGGCGTCTTTCTTCTCCGAT 59.104 50.000 0.00 0.00 0.00 4.18
1691 1846 1.135083 TGGCGTCTTTCTTCTCCGATC 60.135 52.381 0.00 0.00 0.00 3.69
1692 1847 1.135333 GGCGTCTTTCTTCTCCGATCT 59.865 52.381 0.00 0.00 0.00 2.75
1693 1848 2.456010 GCGTCTTTCTTCTCCGATCTC 58.544 52.381 0.00 0.00 0.00 2.75
1694 1849 2.159366 GCGTCTTTCTTCTCCGATCTCA 60.159 50.000 0.00 0.00 0.00 3.27
1695 1850 3.690422 CGTCTTTCTTCTCCGATCTCAG 58.310 50.000 0.00 0.00 0.00 3.35
1696 1851 3.127895 CGTCTTTCTTCTCCGATCTCAGT 59.872 47.826 0.00 0.00 0.00 3.41
1697 1852 4.420168 GTCTTTCTTCTCCGATCTCAGTG 58.580 47.826 0.00 0.00 0.00 3.66
1698 1853 3.445450 TCTTTCTTCTCCGATCTCAGTGG 59.555 47.826 0.00 0.00 0.00 4.00
1699 1854 2.808906 TCTTCTCCGATCTCAGTGGA 57.191 50.000 0.00 0.00 0.00 4.02
1700 1855 3.304911 TCTTCTCCGATCTCAGTGGAT 57.695 47.619 0.00 0.00 0.00 3.41
1701 1856 2.954989 TCTTCTCCGATCTCAGTGGATG 59.045 50.000 0.00 0.00 0.00 3.51
1702 1857 2.736670 TCTCCGATCTCAGTGGATGA 57.263 50.000 0.00 0.00 36.21 2.92
1703 1858 3.018423 TCTCCGATCTCAGTGGATGAA 57.982 47.619 0.00 0.00 37.52 2.57
1704 1859 2.954989 TCTCCGATCTCAGTGGATGAAG 59.045 50.000 0.00 0.00 37.52 3.02
1705 1860 2.034878 TCCGATCTCAGTGGATGAAGG 58.965 52.381 0.00 0.00 37.52 3.46
1706 1861 2.034878 CCGATCTCAGTGGATGAAGGA 58.965 52.381 0.00 0.00 37.52 3.36
1707 1862 2.035704 CCGATCTCAGTGGATGAAGGAG 59.964 54.545 0.00 0.00 37.52 3.69
1708 1863 2.954989 CGATCTCAGTGGATGAAGGAGA 59.045 50.000 0.00 0.00 37.52 3.71
1709 1864 3.243367 CGATCTCAGTGGATGAAGGAGAC 60.243 52.174 0.00 0.00 37.52 3.36
1710 1865 2.095461 TCTCAGTGGATGAAGGAGACG 58.905 52.381 0.00 0.00 37.52 4.18
1711 1866 1.135915 CTCAGTGGATGAAGGAGACGG 59.864 57.143 0.00 0.00 37.52 4.79
1712 1867 0.898320 CAGTGGATGAAGGAGACGGT 59.102 55.000 0.00 0.00 0.00 4.83
1713 1868 0.898320 AGTGGATGAAGGAGACGGTG 59.102 55.000 0.00 0.00 0.00 4.94
1714 1869 0.741221 GTGGATGAAGGAGACGGTGC 60.741 60.000 0.00 0.00 0.00 5.01
1715 1870 0.904865 TGGATGAAGGAGACGGTGCT 60.905 55.000 0.00 0.00 0.00 4.40
1803 1958 1.260206 CAGACCGTTCAATCGACTCG 58.740 55.000 0.00 0.00 0.00 4.18
1900 2055 2.278013 GCGACGATGGAGTCCGAC 60.278 66.667 4.30 0.00 37.85 4.79
2003 2158 4.053295 CAAAGCTCCAGGACAATTGTTTG 58.947 43.478 13.36 13.75 38.86 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.378119 CAGCTCCATGGCAAGCAGA 60.378 57.895 23.41 0.00 41.06 4.26
223 225 2.172851 AATCAAACTACACGCCGGAA 57.827 45.000 5.05 0.00 0.00 4.30
266 268 1.524621 GATCCCGCCAGTGATGTGG 60.525 63.158 0.00 0.00 41.01 4.17
578 585 1.242076 ACTTACAGCAGCTTGCCAAG 58.758 50.000 0.00 0.00 46.52 3.61
662 679 4.513198 TCTCGGCTTTTACCCATTTTTG 57.487 40.909 0.00 0.00 0.00 2.44
838 920 7.983307 AGAAGCACTCTTATCAATAGCAAAAG 58.017 34.615 0.00 0.00 31.48 2.27
1099 1241 6.385649 AAAACTGAATTTTTACTCCTCGCA 57.614 33.333 0.00 0.00 37.18 5.10
1145 1289 9.672673 CCCGGATTTTCTCATAGATAAATGTAT 57.327 33.333 0.73 0.00 0.00 2.29
1192 1336 4.088634 CCTTGGATCATTTGGGACTTTCA 58.911 43.478 0.00 0.00 0.00 2.69
1604 1759 3.671928 CCTTGTACTAAACAACGTCCTCG 59.328 47.826 0.00 0.00 43.22 4.63
1605 1760 4.625028 ACCTTGTACTAAACAACGTCCTC 58.375 43.478 0.00 0.00 43.22 3.71
1606 1761 4.343239 AGACCTTGTACTAAACAACGTCCT 59.657 41.667 13.01 3.21 46.66 3.85
1607 1762 4.446719 CAGACCTTGTACTAAACAACGTCC 59.553 45.833 13.01 1.62 46.66 4.79
1608 1763 5.045872 ACAGACCTTGTACTAAACAACGTC 58.954 41.667 10.22 10.22 46.23 4.34
1609 1764 5.014808 ACAGACCTTGTACTAAACAACGT 57.985 39.130 0.00 0.00 43.22 3.99
1610 1765 5.734311 CAACAGACCTTGTACTAAACAACG 58.266 41.667 0.00 0.00 43.22 4.10
1611 1766 5.296035 AGCAACAGACCTTGTACTAAACAAC 59.704 40.000 0.00 0.00 43.22 3.32
1612 1767 5.295787 CAGCAACAGACCTTGTACTAAACAA 59.704 40.000 0.00 0.00 45.90 2.83
1613 1768 4.814234 CAGCAACAGACCTTGTACTAAACA 59.186 41.667 0.00 0.00 39.73 2.83
1614 1769 4.814771 ACAGCAACAGACCTTGTACTAAAC 59.185 41.667 0.00 0.00 39.73 2.01
1615 1770 5.031066 ACAGCAACAGACCTTGTACTAAA 57.969 39.130 0.00 0.00 39.73 1.85
1616 1771 4.682778 ACAGCAACAGACCTTGTACTAA 57.317 40.909 0.00 0.00 39.73 2.24
1617 1772 4.344102 AGAACAGCAACAGACCTTGTACTA 59.656 41.667 0.00 0.00 39.73 1.82
1618 1773 3.134804 AGAACAGCAACAGACCTTGTACT 59.865 43.478 0.00 0.00 39.73 2.73
1619 1774 3.248602 CAGAACAGCAACAGACCTTGTAC 59.751 47.826 0.00 0.00 39.73 2.90
1620 1775 3.466836 CAGAACAGCAACAGACCTTGTA 58.533 45.455 0.00 0.00 39.73 2.41
1621 1776 2.292267 CAGAACAGCAACAGACCTTGT 58.708 47.619 0.00 0.00 43.45 3.16
1622 1777 1.605710 CCAGAACAGCAACAGACCTTG 59.394 52.381 0.00 0.00 0.00 3.61
1623 1778 1.490490 TCCAGAACAGCAACAGACCTT 59.510 47.619 0.00 0.00 0.00 3.50
1624 1779 1.071385 CTCCAGAACAGCAACAGACCT 59.929 52.381 0.00 0.00 0.00 3.85
1625 1780 1.517242 CTCCAGAACAGCAACAGACC 58.483 55.000 0.00 0.00 0.00 3.85
1626 1781 0.871057 GCTCCAGAACAGCAACAGAC 59.129 55.000 0.00 0.00 36.82 3.51
1627 1782 0.469494 TGCTCCAGAACAGCAACAGA 59.531 50.000 0.00 0.00 44.02 3.41
1628 1783 3.011085 TGCTCCAGAACAGCAACAG 57.989 52.632 0.00 0.00 44.02 3.16
1633 1788 1.400846 CATCACATGCTCCAGAACAGC 59.599 52.381 0.00 0.00 37.40 4.40
1634 1789 2.418976 CACATCACATGCTCCAGAACAG 59.581 50.000 0.00 0.00 0.00 3.16
1635 1790 2.429478 CACATCACATGCTCCAGAACA 58.571 47.619 0.00 0.00 0.00 3.18
1636 1791 1.741706 CCACATCACATGCTCCAGAAC 59.258 52.381 0.00 0.00 0.00 3.01
1637 1792 1.629861 TCCACATCACATGCTCCAGAA 59.370 47.619 0.00 0.00 0.00 3.02
1638 1793 1.278537 TCCACATCACATGCTCCAGA 58.721 50.000 0.00 0.00 0.00 3.86
1639 1794 1.947456 CATCCACATCACATGCTCCAG 59.053 52.381 0.00 0.00 0.00 3.86
1640 1795 1.409101 CCATCCACATCACATGCTCCA 60.409 52.381 0.00 0.00 0.00 3.86
1641 1796 1.315690 CCATCCACATCACATGCTCC 58.684 55.000 0.00 0.00 0.00 4.70
1642 1797 1.674441 CACCATCCACATCACATGCTC 59.326 52.381 0.00 0.00 0.00 4.26
1643 1798 1.683938 CCACCATCCACATCACATGCT 60.684 52.381 0.00 0.00 0.00 3.79
1644 1799 0.742505 CCACCATCCACATCACATGC 59.257 55.000 0.00 0.00 0.00 4.06
1645 1800 2.133281 ACCACCATCCACATCACATG 57.867 50.000 0.00 0.00 0.00 3.21
1646 1801 2.827322 CAAACCACCATCCACATCACAT 59.173 45.455 0.00 0.00 0.00 3.21
1647 1802 2.237643 CAAACCACCATCCACATCACA 58.762 47.619 0.00 0.00 0.00 3.58
1648 1803 1.067635 GCAAACCACCATCCACATCAC 60.068 52.381 0.00 0.00 0.00 3.06
1649 1804 1.255882 GCAAACCACCATCCACATCA 58.744 50.000 0.00 0.00 0.00 3.07
1650 1805 0.171007 CGCAAACCACCATCCACATC 59.829 55.000 0.00 0.00 0.00 3.06
1651 1806 1.250154 CCGCAAACCACCATCCACAT 61.250 55.000 0.00 0.00 0.00 3.21
1652 1807 1.900981 CCGCAAACCACCATCCACA 60.901 57.895 0.00 0.00 0.00 4.17
1653 1808 1.901464 ACCGCAAACCACCATCCAC 60.901 57.895 0.00 0.00 0.00 4.02
1654 1809 1.900981 CACCGCAAACCACCATCCA 60.901 57.895 0.00 0.00 0.00 3.41
1655 1810 2.635443 CCACCGCAAACCACCATCC 61.635 63.158 0.00 0.00 0.00 3.51
1656 1811 2.961768 CCACCGCAAACCACCATC 59.038 61.111 0.00 0.00 0.00 3.51
1657 1812 3.302344 GCCACCGCAAACCACCAT 61.302 61.111 0.00 0.00 34.03 3.55
1660 1815 4.322385 GACGCCACCGCAAACCAC 62.322 66.667 0.00 0.00 38.22 4.16
1661 1816 4.555709 AGACGCCACCGCAAACCA 62.556 61.111 0.00 0.00 38.22 3.67
1662 1817 2.726850 GAAAGACGCCACCGCAAACC 62.727 60.000 0.00 0.00 38.22 3.27
1663 1818 1.370051 GAAAGACGCCACCGCAAAC 60.370 57.895 0.00 0.00 38.22 2.93
1664 1819 1.098712 AAGAAAGACGCCACCGCAAA 61.099 50.000 0.00 0.00 38.22 3.68
1665 1820 1.503818 GAAGAAAGACGCCACCGCAA 61.504 55.000 0.00 0.00 38.22 4.85
1666 1821 1.959226 GAAGAAAGACGCCACCGCA 60.959 57.895 0.00 0.00 38.22 5.69
1667 1822 1.627550 GAGAAGAAAGACGCCACCGC 61.628 60.000 0.00 0.00 38.22 5.68
1668 1823 1.014564 GGAGAAGAAAGACGCCACCG 61.015 60.000 0.00 0.00 41.14 4.94
1669 1824 1.014564 CGGAGAAGAAAGACGCCACC 61.015 60.000 0.00 0.00 0.00 4.61
1670 1825 0.038526 TCGGAGAAGAAAGACGCCAC 60.039 55.000 0.00 0.00 0.00 5.01
1671 1826 0.895530 ATCGGAGAAGAAAGACGCCA 59.104 50.000 0.00 0.00 43.58 5.69
1672 1827 1.135333 AGATCGGAGAAGAAAGACGCC 59.865 52.381 0.00 0.00 43.58 5.68
1673 1828 2.159366 TGAGATCGGAGAAGAAAGACGC 60.159 50.000 0.00 0.00 43.58 5.19
1674 1829 3.127895 ACTGAGATCGGAGAAGAAAGACG 59.872 47.826 0.00 0.00 43.58 4.18
1675 1830 4.420168 CACTGAGATCGGAGAAGAAAGAC 58.580 47.826 0.00 0.00 43.58 3.01
1676 1831 3.445450 CCACTGAGATCGGAGAAGAAAGA 59.555 47.826 0.00 0.00 43.58 2.52
1677 1832 3.445450 TCCACTGAGATCGGAGAAGAAAG 59.555 47.826 0.00 0.00 43.58 2.62
1678 1833 3.431415 TCCACTGAGATCGGAGAAGAAA 58.569 45.455 0.00 0.00 43.58 2.52
1679 1834 3.087370 TCCACTGAGATCGGAGAAGAA 57.913 47.619 0.00 0.00 43.58 2.52
1680 1835 2.808906 TCCACTGAGATCGGAGAAGA 57.191 50.000 0.00 0.00 43.58 2.87
1681 1836 2.954989 TCATCCACTGAGATCGGAGAAG 59.045 50.000 0.00 0.00 43.58 2.85
1682 1837 3.018423 TCATCCACTGAGATCGGAGAA 57.982 47.619 0.00 0.00 43.58 2.87
1683 1838 2.736670 TCATCCACTGAGATCGGAGA 57.263 50.000 0.00 0.00 45.75 3.71
1684 1839 2.035704 CCTTCATCCACTGAGATCGGAG 59.964 54.545 0.00 0.00 34.68 4.63
1685 1840 2.034878 CCTTCATCCACTGAGATCGGA 58.965 52.381 0.00 0.00 34.68 4.55
1686 1841 2.034878 TCCTTCATCCACTGAGATCGG 58.965 52.381 0.00 0.00 34.68 4.18
1687 1842 2.954989 TCTCCTTCATCCACTGAGATCG 59.045 50.000 0.00 0.00 34.68 3.69
1688 1843 3.243367 CGTCTCCTTCATCCACTGAGATC 60.243 52.174 0.00 0.00 34.83 2.75
1689 1844 2.692557 CGTCTCCTTCATCCACTGAGAT 59.307 50.000 0.00 0.00 34.83 2.75
1690 1845 2.095461 CGTCTCCTTCATCCACTGAGA 58.905 52.381 0.00 0.00 34.68 3.27
1691 1846 1.135915 CCGTCTCCTTCATCCACTGAG 59.864 57.143 0.00 0.00 34.68 3.35
1692 1847 1.186200 CCGTCTCCTTCATCCACTGA 58.814 55.000 0.00 0.00 0.00 3.41
1693 1848 0.898320 ACCGTCTCCTTCATCCACTG 59.102 55.000 0.00 0.00 0.00 3.66
1694 1849 0.898320 CACCGTCTCCTTCATCCACT 59.102 55.000 0.00 0.00 0.00 4.00
1695 1850 0.741221 GCACCGTCTCCTTCATCCAC 60.741 60.000 0.00 0.00 0.00 4.02
1696 1851 0.904865 AGCACCGTCTCCTTCATCCA 60.905 55.000 0.00 0.00 0.00 3.41
1697 1852 0.460987 CAGCACCGTCTCCTTCATCC 60.461 60.000 0.00 0.00 0.00 3.51
1698 1853 0.460987 CCAGCACCGTCTCCTTCATC 60.461 60.000 0.00 0.00 0.00 2.92
1699 1854 1.599047 CCAGCACCGTCTCCTTCAT 59.401 57.895 0.00 0.00 0.00 2.57
1700 1855 2.583441 CCCAGCACCGTCTCCTTCA 61.583 63.158 0.00 0.00 0.00 3.02
1701 1856 1.617947 ATCCCAGCACCGTCTCCTTC 61.618 60.000 0.00 0.00 0.00 3.46
1702 1857 1.613630 ATCCCAGCACCGTCTCCTT 60.614 57.895 0.00 0.00 0.00 3.36
1703 1858 2.039624 ATCCCAGCACCGTCTCCT 59.960 61.111 0.00 0.00 0.00 3.69
1704 1859 2.060980 AGATCCCAGCACCGTCTCC 61.061 63.158 0.00 0.00 0.00 3.71
1705 1860 1.142748 CAGATCCCAGCACCGTCTC 59.857 63.158 0.00 0.00 0.00 3.36
1706 1861 1.305297 TCAGATCCCAGCACCGTCT 60.305 57.895 0.00 0.00 0.00 4.18
1707 1862 1.153549 GTCAGATCCCAGCACCGTC 60.154 63.158 0.00 0.00 0.00 4.79
1708 1863 2.982130 GTCAGATCCCAGCACCGT 59.018 61.111 0.00 0.00 0.00 4.83
1709 1864 2.202797 CGTCAGATCCCAGCACCG 60.203 66.667 0.00 0.00 0.00 4.94
1710 1865 2.187946 CCGTCAGATCCCAGCACC 59.812 66.667 0.00 0.00 0.00 5.01
1711 1866 2.187946 CCCGTCAGATCCCAGCAC 59.812 66.667 0.00 0.00 0.00 4.40
1712 1867 3.785859 GCCCGTCAGATCCCAGCA 61.786 66.667 0.00 0.00 0.00 4.41
1713 1868 3.036429 AAGCCCGTCAGATCCCAGC 62.036 63.158 0.00 0.00 0.00 4.85
1714 1869 1.153289 CAAGCCCGTCAGATCCCAG 60.153 63.158 0.00 0.00 0.00 4.45
1715 1870 2.669133 CCAAGCCCGTCAGATCCCA 61.669 63.158 0.00 0.00 0.00 4.37
1803 1958 4.137879 CAGACCATGCTGCTAGGC 57.862 61.111 10.19 4.67 0.00 3.93
1900 2055 5.210715 GCAAATCCAATCTCTTAAGCATCG 58.789 41.667 0.00 0.00 0.00 3.84
2003 2158 4.092968 GGTCGATCCATAAGACAAACACAC 59.907 45.833 0.00 0.00 36.68 3.82
2029 2184 6.655003 ACAAATAACTTACAGGATGGACACAG 59.345 38.462 0.00 0.00 43.62 3.66
2035 2190 8.739039 TCATTCAACAAATAACTTACAGGATGG 58.261 33.333 0.00 0.00 43.62 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.