Multiple sequence alignment - TraesCS2A01G240000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G240000 chr2A 100.000 9460 0 0 1 9460 334599238 334589779 0.000000e+00 17470.0
1 TraesCS2A01G240000 chr2A 100.000 68 0 0 9236 9303 334589937 334589870 9.970000e-25 126.0
2 TraesCS2A01G240000 chr2A 100.000 68 0 0 9302 9369 334590003 334589936 9.970000e-25 126.0
3 TraesCS2A01G240000 chr2A 100.000 45 0 0 6945 6989 334592251 334592207 6.090000e-12 84.2
4 TraesCS2A01G240000 chr2A 100.000 45 0 0 6988 7032 334592294 334592250 6.090000e-12 84.2
5 TraesCS2A01G240000 chr2D 96.611 2921 65 12 447 3342 280656634 280653723 0.000000e+00 4815.0
6 TraesCS2A01G240000 chr2D 98.427 1653 25 1 6985 8637 280651140 280649489 0.000000e+00 2907.0
7 TraesCS2A01G240000 chr2D 97.523 1292 20 7 4950 6230 280653313 280652023 0.000000e+00 2198.0
8 TraesCS2A01G240000 chr2D 97.759 714 13 2 6233 6946 280651982 280651272 0.000000e+00 1227.0
9 TraesCS2A01G240000 chr2D 92.582 674 23 10 8637 9283 280648818 280648145 0.000000e+00 942.0
10 TraesCS2A01G240000 chr2D 99.022 409 3 1 4516 4924 280653716 280653309 0.000000e+00 732.0
11 TraesCS2A01G240000 chr2D 90.026 391 32 5 53 442 280657100 280656716 5.100000e-137 499.0
12 TraesCS2A01G240000 chr2D 85.841 113 16 0 8667 8779 589545809 589545697 4.640000e-23 121.0
13 TraesCS2A01G240000 chr2D 96.429 56 2 0 1 56 280755500 280755445 1.010000e-14 93.5
14 TraesCS2A01G240000 chr2D 98.077 52 1 0 6938 6989 280651144 280651093 3.640000e-14 91.6
15 TraesCS2A01G240000 chr2D 97.959 49 0 1 9302 9349 280648193 280648145 6.090000e-12 84.2
16 TraesCS2A01G240000 chr2B 94.439 2176 74 21 852 3003 326675393 326677545 0.000000e+00 3304.0
17 TraesCS2A01G240000 chr2B 97.224 1657 42 4 6985 8637 326679646 326681302 0.000000e+00 2802.0
18 TraesCS2A01G240000 chr2B 97.371 1179 20 8 3343 4518 474900504 474901674 0.000000e+00 1995.0
19 TraesCS2A01G240000 chr2B 95.081 1240 38 12 5010 6230 326677528 326678763 0.000000e+00 1930.0
20 TraesCS2A01G240000 chr2B 96.359 714 23 2 6233 6946 326678804 326679514 0.000000e+00 1171.0
21 TraesCS2A01G240000 chr2B 87.886 421 37 10 8869 9281 326682103 326682517 5.140000e-132 483.0
22 TraesCS2A01G240000 chr2B 85.845 219 14 6 8637 8855 326681949 326682150 5.750000e-52 217.0
23 TraesCS2A01G240000 chr2B 97.059 34 1 0 4966 4999 26578951 26578984 3.690000e-04 58.4
24 TraesCS2A01G240000 chr1D 98.131 1177 17 4 3343 4518 254417227 254418399 0.000000e+00 2047.0
25 TraesCS2A01G240000 chr1D 96.796 1186 25 4 3343 4518 51877912 51876730 0.000000e+00 1967.0
26 TraesCS2A01G240000 chr1A 97.881 1180 18 7 3343 4518 554458629 554459805 0.000000e+00 2034.0
27 TraesCS2A01G240000 chr1A 88.462 52 6 0 9368 9419 578354162 578354111 7.930000e-06 63.9
28 TraesCS2A01G240000 chr6D 97.222 1188 14 7 3343 4518 45511409 45510229 0.000000e+00 1993.0
29 TraesCS2A01G240000 chr6D 84.956 113 17 0 8667 8779 355100289 355100401 2.160000e-21 115.0
30 TraesCS2A01G240000 chr6D 88.889 63 7 0 5200 5262 409775715 409775653 2.830000e-10 78.7
31 TraesCS2A01G240000 chr5D 96.627 1186 24 6 3343 4518 120800032 120801211 0.000000e+00 1954.0
32 TraesCS2A01G240000 chr5D 96.380 1188 19 11 3343 4518 6180784 6179609 0.000000e+00 1934.0
33 TraesCS2A01G240000 chr5D 95.349 43 2 0 5208 5250 509887005 509886963 1.700000e-07 69.4
34 TraesCS2A01G240000 chr5A 96.670 1171 30 7 3343 4512 607199929 607198767 0.000000e+00 1938.0
35 TraesCS2A01G240000 chr7B 94.643 1176 53 6 3343 4518 105256435 105255270 0.000000e+00 1814.0
36 TraesCS2A01G240000 chr7B 89.474 171 17 1 468 637 749294283 749294453 2.070000e-51 215.0
37 TraesCS2A01G240000 chr7B 88.421 95 11 0 8677 8771 481293218 481293312 2.160000e-21 115.0
38 TraesCS2A01G240000 chr4D 94.309 492 25 2 4516 5007 465058868 465058380 0.000000e+00 750.0
39 TraesCS2A01G240000 chr4D 91.743 218 18 0 3125 3342 465059092 465058875 4.290000e-78 303.0
40 TraesCS2A01G240000 chr4D 91.453 117 6 4 3003 3115 465063397 465063281 3.540000e-34 158.0
41 TraesCS2A01G240000 chr4D 91.667 48 2 2 5208 5254 508989450 508989404 2.210000e-06 65.8
42 TraesCS2A01G240000 chr3A 90.505 495 33 6 4516 5009 684591508 684591989 8.010000e-180 641.0
43 TraesCS2A01G240000 chr3A 83.383 337 31 12 3011 3342 684591185 684591501 1.200000e-73 289.0
44 TraesCS2A01G240000 chr3A 86.667 105 14 0 8667 8771 568437309 568437413 6.000000e-22 117.0
45 TraesCS2A01G240000 chr3A 93.478 46 2 1 5208 5252 483152034 483152079 6.130000e-07 67.6
46 TraesCS2A01G240000 chr6B 85.016 307 41 3 4614 4920 135870568 135870267 3.320000e-79 307.0
47 TraesCS2A01G240000 chr6B 77.698 139 24 5 5130 5262 615992803 615992666 2.830000e-10 78.7
48 TraesCS2A01G240000 chr6B 93.750 48 2 1 4961 5007 135870132 135870085 4.740000e-08 71.3
49 TraesCS2A01G240000 chr3B 86.387 191 25 1 448 637 784154070 784153880 3.460000e-49 207.0
50 TraesCS2A01G240000 chr1B 87.952 166 20 0 448 613 205500384 205500549 7.490000e-46 196.0
51 TraesCS2A01G240000 chr1B 84.762 105 16 0 8667 8771 525674001 525673897 1.300000e-18 106.0
52 TraesCS2A01G240000 chr6A 88.596 114 12 1 500 613 38694260 38694372 4.610000e-28 137.0
53 TraesCS2A01G240000 chr6A 87.500 64 8 0 5200 5263 555245226 555245163 3.660000e-09 75.0
54 TraesCS2A01G240000 chr3D 84.071 113 18 0 8667 8779 27882147 27882035 1.000000e-19 110.0
55 TraesCS2A01G240000 chr3D 93.878 49 2 1 5208 5255 362727871 362727919 1.320000e-08 73.1
56 TraesCS2A01G240000 chrUn 83.810 105 17 0 8667 8771 27664194 27664298 6.040000e-17 100.0
57 TraesCS2A01G240000 chr5B 97.297 37 1 0 9424 9460 570957915 570957879 7.930000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G240000 chr2A 334589779 334599238 9459 True 17470.000000 17470 100.000000 1 9460 1 chr2A.!!$R1 9459
1 TraesCS2A01G240000 chr2D 280648145 280657100 8955 True 1499.533333 4815 96.442889 53 9349 9 chr2D.!!$R3 9296
2 TraesCS2A01G240000 chr2B 474900504 474901674 1170 False 1995.000000 1995 97.371000 3343 4518 1 chr2B.!!$F2 1175
3 TraesCS2A01G240000 chr2B 326675393 326682517 7124 False 1651.166667 3304 92.805667 852 9281 6 chr2B.!!$F3 8429
4 TraesCS2A01G240000 chr1D 254417227 254418399 1172 False 2047.000000 2047 98.131000 3343 4518 1 chr1D.!!$F1 1175
5 TraesCS2A01G240000 chr1D 51876730 51877912 1182 True 1967.000000 1967 96.796000 3343 4518 1 chr1D.!!$R1 1175
6 TraesCS2A01G240000 chr1A 554458629 554459805 1176 False 2034.000000 2034 97.881000 3343 4518 1 chr1A.!!$F1 1175
7 TraesCS2A01G240000 chr6D 45510229 45511409 1180 True 1993.000000 1993 97.222000 3343 4518 1 chr6D.!!$R1 1175
8 TraesCS2A01G240000 chr5D 120800032 120801211 1179 False 1954.000000 1954 96.627000 3343 4518 1 chr5D.!!$F1 1175
9 TraesCS2A01G240000 chr5D 6179609 6180784 1175 True 1934.000000 1934 96.380000 3343 4518 1 chr5D.!!$R1 1175
10 TraesCS2A01G240000 chr5A 607198767 607199929 1162 True 1938.000000 1938 96.670000 3343 4512 1 chr5A.!!$R1 1169
11 TraesCS2A01G240000 chr7B 105255270 105256435 1165 True 1814.000000 1814 94.643000 3343 4518 1 chr7B.!!$R1 1175
12 TraesCS2A01G240000 chr4D 465058380 465059092 712 True 526.500000 750 93.026000 3125 5007 2 chr4D.!!$R3 1882
13 TraesCS2A01G240000 chr3A 684591185 684591989 804 False 465.000000 641 86.944000 3011 5009 2 chr3A.!!$F3 1998

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.320683 CAGTCATGTGCGAACCTCCA 60.321 55.000 0.00 0.00 0.00 3.86 F
384 385 0.389426 AGTCCGCAACATGTACGGTC 60.389 55.000 29.12 25.32 46.92 4.79 F
2275 2386 0.881118 TCAAAACTGCAGATTCGGGC 59.119 50.000 23.35 0.00 0.00 6.13 F
3185 3306 0.179097 CTAGTCTTCCTTGGAGGCGC 60.179 60.000 0.00 0.00 34.61 6.53 F
4722 4875 1.260206 CAGACCGTTCAATCGACTCG 58.740 55.000 0.00 0.00 0.00 4.18 F
6461 6671 2.227388 GCTCTTGTGGTTGAATCCTGTG 59.773 50.000 0.00 0.00 0.00 3.66 F
6800 7010 1.906574 TCCTGCGGACCTCTTTATTGT 59.093 47.619 0.00 0.00 0.00 2.71 F
6970 7180 1.956477 GAGCAACTTTTGGGCTTGAGA 59.044 47.619 0.00 0.00 38.15 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1193 1293 0.321671 CTCGGCACCCTCTTCTTCAA 59.678 55.000 0.00 0.0 0.00 2.69 R
2298 2409 0.108207 CTGATCTGGGCTGCTTAGGG 59.892 60.000 0.00 0.0 0.00 3.53 R
3497 3623 1.242076 ACTTACAGCAGCTTGCCAAG 58.758 50.000 0.00 0.0 46.52 3.61 R
5050 5203 0.105964 TTAGTGCAAACCAGGGGCAA 60.106 50.000 4.45 0.0 39.57 4.52 R
6661 6871 1.345741 TCTTCCCTGCTGAGAACACAG 59.654 52.381 0.00 0.0 40.43 3.66 R
7636 7941 0.029989 ACCAAGGGGATAGGAGGGAC 60.030 60.000 0.00 0.0 38.05 4.46 R
8108 8413 0.249031 ACTTTTGCGGCACTGAAAGC 60.249 50.000 20.03 0.0 37.60 3.51 R
8756 9764 1.876156 GCCTCATACAATGCTAGGTGC 59.124 52.381 0.00 0.0 43.25 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.821366 GGGAGGCAGTCATGTGCG 60.821 66.667 2.55 0.00 45.00 5.34
18 19 2.265739 GGAGGCAGTCATGTGCGA 59.734 61.111 2.55 0.00 45.00 5.10
19 20 1.375908 GGAGGCAGTCATGTGCGAA 60.376 57.895 2.55 0.00 45.00 4.70
20 21 1.639298 GGAGGCAGTCATGTGCGAAC 61.639 60.000 2.55 0.00 45.00 3.95
21 22 1.639298 GAGGCAGTCATGTGCGAACC 61.639 60.000 2.55 0.00 45.00 3.62
22 23 1.672356 GGCAGTCATGTGCGAACCT 60.672 57.895 2.55 0.00 45.00 3.50
23 24 1.639298 GGCAGTCATGTGCGAACCTC 61.639 60.000 2.55 0.00 45.00 3.85
24 25 1.639298 GCAGTCATGTGCGAACCTCC 61.639 60.000 0.00 0.00 32.74 4.30
25 26 0.320683 CAGTCATGTGCGAACCTCCA 60.321 55.000 0.00 0.00 0.00 3.86
26 27 0.615331 AGTCATGTGCGAACCTCCAT 59.385 50.000 0.00 0.00 0.00 3.41
27 28 1.831106 AGTCATGTGCGAACCTCCATA 59.169 47.619 0.00 0.00 0.00 2.74
28 29 2.159043 AGTCATGTGCGAACCTCCATAG 60.159 50.000 0.00 0.00 0.00 2.23
29 30 0.940126 CATGTGCGAACCTCCATAGC 59.060 55.000 0.00 0.00 0.00 2.97
30 31 0.541392 ATGTGCGAACCTCCATAGCA 59.459 50.000 0.00 0.00 35.27 3.49
31 32 4.932789 TGCGAACCTCCATAGCAC 57.067 55.556 0.00 0.00 32.43 4.40
32 33 2.286826 TGCGAACCTCCATAGCACT 58.713 52.632 0.00 0.00 32.43 4.40
33 34 1.480789 TGCGAACCTCCATAGCACTA 58.519 50.000 0.00 0.00 32.43 2.74
34 35 2.039418 TGCGAACCTCCATAGCACTAT 58.961 47.619 0.00 0.00 32.43 2.12
35 36 2.224042 TGCGAACCTCCATAGCACTATG 60.224 50.000 10.18 10.18 41.86 2.23
36 37 2.408050 CGAACCTCCATAGCACTATGC 58.592 52.381 11.45 0.00 45.46 3.14
49 50 2.979813 GCACTATGCTCGTTTTGTTTGG 59.020 45.455 0.00 0.00 40.96 3.28
50 51 3.564511 CACTATGCTCGTTTTGTTTGGG 58.435 45.455 0.00 0.00 0.00 4.12
51 52 2.556622 ACTATGCTCGTTTTGTTTGGGG 59.443 45.455 0.00 0.00 0.00 4.96
56 57 1.957877 CTCGTTTTGTTTGGGGCCTTA 59.042 47.619 0.84 0.00 0.00 2.69
87 88 7.201947 CCCAGATTTCTTTCCAATATTTCTCCC 60.202 40.741 0.00 0.00 0.00 4.30
108 109 2.036733 CCAACTTCCCTACTTGACGTGA 59.963 50.000 0.00 0.00 0.00 4.35
109 110 3.318017 CAACTTCCCTACTTGACGTGAG 58.682 50.000 0.00 0.00 0.00 3.51
126 127 3.686016 GTGAGTCCACAACCAACCATAT 58.314 45.455 0.00 0.00 42.72 1.78
175 176 3.118645 CGAGCGAGATTGTATGATGAACG 59.881 47.826 0.00 0.00 0.00 3.95
180 181 4.803613 CGAGATTGTATGATGAACGGACAA 59.196 41.667 0.00 0.00 34.73 3.18
210 211 2.377628 AAAGCGAGTGTGAGGCCGAA 62.378 55.000 0.00 0.00 0.00 4.30
220 221 2.034053 TGTGAGGCCGAAACACAAAATC 59.966 45.455 19.63 0.38 40.72 2.17
226 227 2.552315 GCCGAAACACAAAATCCTCTCA 59.448 45.455 0.00 0.00 0.00 3.27
235 236 2.626743 CAAAATCCTCTCATCCATGGCC 59.373 50.000 6.96 0.00 0.00 5.36
242 243 2.234661 CTCTCATCCATGGCCGCTAATA 59.765 50.000 6.96 0.00 0.00 0.98
275 276 6.865834 AATATGAGTTCAACAGTCTCCTCT 57.134 37.500 0.00 0.00 0.00 3.69
276 277 6.865834 ATATGAGTTCAACAGTCTCCTCTT 57.134 37.500 0.00 0.00 0.00 2.85
277 278 4.327982 TGAGTTCAACAGTCTCCTCTTG 57.672 45.455 0.00 0.00 0.00 3.02
278 279 3.960755 TGAGTTCAACAGTCTCCTCTTGA 59.039 43.478 0.00 0.00 0.00 3.02
301 302 9.520204 TTGAAAGAAAGCTCTAACATTTTCTTG 57.480 29.630 10.67 0.00 44.60 3.02
303 304 7.588497 AAGAAAGCTCTAACATTTTCTTGGT 57.412 32.000 9.50 0.00 44.04 3.67
308 309 6.012745 AGCTCTAACATTTTCTTGGTTCCAT 58.987 36.000 0.00 0.00 0.00 3.41
314 315 4.653341 ACATTTTCTTGGTTCCATTGACCA 59.347 37.500 0.00 0.00 45.09 4.02
335 336 0.392998 GTCCATCCACGAGGCAACAT 60.393 55.000 0.00 0.00 41.41 2.71
343 344 3.259876 TCCACGAGGCAACATACTTTAGT 59.740 43.478 0.00 0.00 41.41 2.24
370 371 7.986085 ATTATGGAATTGGAAATAGAGTCCG 57.014 36.000 0.00 0.00 38.06 4.79
377 378 3.270027 TGGAAATAGAGTCCGCAACATG 58.730 45.455 0.00 0.00 38.06 3.21
384 385 0.389426 AGTCCGCAACATGTACGGTC 60.389 55.000 29.12 25.32 46.92 4.79
391 392 1.870055 AACATGTACGGTCGGCGTCT 61.870 55.000 6.85 0.00 0.00 4.18
406 407 3.927142 CGGCGTCTAGGAATCCAATAATC 59.073 47.826 0.61 0.00 0.00 1.75
408 409 5.105877 CGGCGTCTAGGAATCCAATAATCTA 60.106 44.000 0.61 0.00 0.00 1.98
442 443 3.569701 ACCTTATGGCCATTAGCAATTCG 59.430 43.478 26.37 12.28 46.50 3.34
443 444 3.820467 CCTTATGGCCATTAGCAATTCGA 59.180 43.478 26.37 0.00 46.50 3.71
444 445 4.083110 CCTTATGGCCATTAGCAATTCGAG 60.083 45.833 26.37 4.78 46.50 4.04
445 446 1.679139 TGGCCATTAGCAATTCGAGG 58.321 50.000 0.00 0.00 46.50 4.63
464 542 1.691434 GGGTCCCAAAAATTGCAGTGA 59.309 47.619 1.78 0.00 0.00 3.41
466 544 3.432890 GGGTCCCAAAAATTGCAGTGAAA 60.433 43.478 1.78 0.00 0.00 2.69
489 567 5.700722 AAAATAACGTCCTTTGAGAACCC 57.299 39.130 0.00 0.00 0.00 4.11
542 620 3.394606 ACCTCCAACATTGTCTACCAAGT 59.605 43.478 0.00 0.00 36.25 3.16
547 625 6.346096 TCCAACATTGTCTACCAAGTATAGC 58.654 40.000 0.00 0.00 36.25 2.97
568 646 4.651045 AGCCTGGTTGAAGAGTGAAAAATT 59.349 37.500 0.00 0.00 0.00 1.82
570 648 5.920840 GCCTGGTTGAAGAGTGAAAAATTAC 59.079 40.000 0.00 0.00 0.00 1.89
583 661 4.278919 TGAAAAATTACGGAAACCCAGTCC 59.721 41.667 0.00 0.00 0.00 3.85
584 662 3.801307 AAATTACGGAAACCCAGTCCT 57.199 42.857 0.00 0.00 32.53 3.85
585 663 4.914177 AAATTACGGAAACCCAGTCCTA 57.086 40.909 0.00 0.00 32.53 2.94
589 667 1.346722 ACGGAAACCCAGTCCTACAAG 59.653 52.381 0.00 0.00 32.53 3.16
630 708 6.723298 ACCATTTCATAAACACTGGTGAAA 57.277 33.333 7.78 2.38 42.61 2.69
636 733 7.595819 TTCATAAACACTGGTGAAATTTCCT 57.404 32.000 15.48 0.00 0.00 3.36
704 801 2.961062 GGGTATACGCAGGGAGTTCTAA 59.039 50.000 14.60 0.00 0.00 2.10
757 856 6.142818 TGGAGTTTCGGGCAAAAATATATG 57.857 37.500 0.00 0.00 0.00 1.78
1193 1293 2.040544 CCAAGAATTCGGCGGTGCT 61.041 57.895 7.21 0.00 0.00 4.40
1202 1302 1.667830 CGGCGGTGCTTGAAGAAGA 60.668 57.895 0.00 0.00 0.00 2.87
1252 1352 2.279517 GCGACGCCCTAGTGGATG 60.280 66.667 9.14 0.00 35.39 3.51
1342 1442 1.688772 AGAGGAGCGTTTAGGCGATA 58.311 50.000 0.00 0.00 38.18 2.92
1559 1659 1.520342 GAGATGAGCACACCGAGGC 60.520 63.158 0.00 0.00 0.00 4.70
1601 1701 2.230750 GCAGCTTGCTGAAAGAGGAAAT 59.769 45.455 24.67 0.00 40.96 2.17
1618 1718 3.313526 GGAAATCGACAATGGTGGAGATG 59.686 47.826 0.00 0.00 35.12 2.90
1872 1972 3.072330 TGAATTGCCTCAAGTGAGTACCA 59.928 43.478 7.51 0.00 40.48 3.25
2275 2386 0.881118 TCAAAACTGCAGATTCGGGC 59.119 50.000 23.35 0.00 0.00 6.13
2298 2409 5.581479 GCTCTAAAACTAGTTTACTGGGAGC 59.419 44.000 25.95 25.95 31.63 4.70
2456 2576 0.922717 CAGCTTTTTGTTGTGCACCG 59.077 50.000 15.69 0.00 0.00 4.94
2486 2606 2.796651 GCCGTCGATGTACCTCGT 59.203 61.111 18.18 0.00 39.62 4.18
2508 2628 2.048970 TTCGGCGCGTCTAAAGCA 60.049 55.556 9.90 0.00 34.19 3.91
2522 2642 0.808125 AAAGCACGCAACACACTGAA 59.192 45.000 0.00 0.00 0.00 3.02
2551 2671 4.015406 CCGCTACTGTGGTGCCCA 62.015 66.667 0.00 0.00 38.95 5.36
2664 2784 6.092092 CGATCACCATTTATTTTTGTGCTCA 58.908 36.000 0.00 0.00 0.00 4.26
2720 2840 3.376078 CCCTGCACAAATGGCGCT 61.376 61.111 7.64 0.00 0.00 5.92
2803 2923 0.957395 CCACCATGTGCTCAGACCAC 60.957 60.000 0.00 0.00 31.34 4.16
2806 2926 0.603707 CCATGTGCTCAGACCACGTT 60.604 55.000 0.00 0.00 36.01 3.99
2928 3048 0.467384 CATTCCTCATCCAGCTCCGT 59.533 55.000 0.00 0.00 0.00 4.69
2986 3106 2.119495 AGGAGACACAAGTTGGTCACT 58.881 47.619 19.93 15.71 37.30 3.41
3185 3306 0.179097 CTAGTCTTCCTTGGAGGCGC 60.179 60.000 0.00 0.00 34.61 6.53
3757 3895 5.426509 ACAATACCTAACCACCTAACCCTAC 59.573 44.000 0.00 0.00 0.00 3.18
3781 3919 7.756558 ACTTTTGCTATTGATAAGAGTGCTTC 58.243 34.615 0.00 0.00 35.56 3.86
4111 4253 4.532126 GGGGGTCAGAATTCTTTCCAATTT 59.468 41.667 20.53 0.00 31.84 1.82
4722 4875 1.260206 CAGACCGTTCAATCGACTCG 58.740 55.000 0.00 0.00 0.00 4.18
4922 5075 4.053295 CAAAGCTCCAGGACAATTGTTTG 58.947 43.478 13.36 13.75 38.86 2.93
5050 5203 2.236223 CTGTCACTCCGGCAGCTCAT 62.236 60.000 0.00 0.00 0.00 2.90
5171 5324 3.570125 CGATCTGGGCTACTTATGACTCA 59.430 47.826 0.00 0.00 0.00 3.41
5264 5417 9.011095 TCAAATAGTTATAGGACCTCTGATACG 57.989 37.037 0.00 0.00 0.00 3.06
5814 5978 9.822185 GGATTTATTGCAAACCAAGATTTCTAT 57.178 29.630 1.71 0.00 36.76 1.98
5947 6111 5.444663 TGCATACACAATTAGCAAACACA 57.555 34.783 0.00 0.00 31.42 3.72
6055 6219 7.875971 ACTGTCTGATATTTCTTTGTTTGACC 58.124 34.615 0.00 0.00 0.00 4.02
6145 6317 7.206981 TCAATGTGAGGTTGAATTCTTTCTC 57.793 36.000 7.05 10.42 32.98 2.87
6230 6402 4.225267 ACCTCCGAAGTATGAATTCAACCT 59.775 41.667 13.09 8.26 0.00 3.50
6231 6403 5.424252 ACCTCCGAAGTATGAATTCAACCTA 59.576 40.000 13.09 0.00 0.00 3.08
6236 6446 6.986817 CCGAAGTATGAATTCAACCTAGATGT 59.013 38.462 13.09 0.00 0.00 3.06
6338 6548 3.894427 ACCAACATGTTTTATGCAGGACA 59.106 39.130 8.77 0.00 0.00 4.02
6400 6610 7.122311 AGAAGGTACCTCTCTATATTCCCAT 57.878 40.000 16.64 0.00 0.00 4.00
6461 6671 2.227388 GCTCTTGTGGTTGAATCCTGTG 59.773 50.000 0.00 0.00 0.00 3.66
6600 6810 7.890127 TCTCCAGAATTGGTAATCTTGTTCAAT 59.110 33.333 0.00 0.00 45.26 2.57
6684 6894 3.181440 TGTGTTCTCAGCAGGGAAGAAAT 60.181 43.478 0.00 0.00 0.00 2.17
6758 6968 9.733556 TGGTTGAATAATATAAGTCAGTGTTGT 57.266 29.630 0.00 0.00 0.00 3.32
6800 7010 1.906574 TCCTGCGGACCTCTTTATTGT 59.093 47.619 0.00 0.00 0.00 2.71
6801 7011 2.304761 TCCTGCGGACCTCTTTATTGTT 59.695 45.455 0.00 0.00 0.00 2.83
6959 7169 9.790344 ATGCTATCTTATTAGATGAGCAACTTT 57.210 29.630 19.89 8.93 43.09 2.66
6960 7170 9.618890 TGCTATCTTATTAGATGAGCAACTTTT 57.381 29.630 16.53 0.00 40.48 2.27
6961 7171 9.875675 GCTATCTTATTAGATGAGCAACTTTTG 57.124 33.333 4.47 0.00 41.25 2.44
6963 7173 7.630242 TCTTATTAGATGAGCAACTTTTGGG 57.370 36.000 0.00 0.00 0.00 4.12
6964 7174 4.725790 ATTAGATGAGCAACTTTTGGGC 57.274 40.909 0.00 0.00 0.00 5.36
6965 7175 2.299326 AGATGAGCAACTTTTGGGCT 57.701 45.000 0.00 0.00 41.35 5.19
6966 7176 2.601905 AGATGAGCAACTTTTGGGCTT 58.398 42.857 0.00 0.00 38.15 4.35
6970 7180 1.956477 GAGCAACTTTTGGGCTTGAGA 59.044 47.619 0.00 0.00 38.15 3.27
6972 7182 2.765699 AGCAACTTTTGGGCTTGAGAAA 59.234 40.909 0.00 0.00 33.21 2.52
6973 7183 3.197549 AGCAACTTTTGGGCTTGAGAAAA 59.802 39.130 0.00 0.00 33.21 2.29
6974 7184 3.557185 GCAACTTTTGGGCTTGAGAAAAG 59.443 43.478 0.00 0.00 40.82 2.27
6976 7186 4.926140 ACTTTTGGGCTTGAGAAAAGAG 57.074 40.909 0.00 0.00 38.44 2.85
6979 7189 3.312736 TTGGGCTTGAGAAAAGAGGTT 57.687 42.857 0.00 0.00 0.00 3.50
6980 7190 2.586425 TGGGCTTGAGAAAAGAGGTTG 58.414 47.619 0.00 0.00 0.00 3.77
6981 7191 2.091885 TGGGCTTGAGAAAAGAGGTTGT 60.092 45.455 0.00 0.00 0.00 3.32
6983 7193 4.142038 GGGCTTGAGAAAAGAGGTTGTAA 58.858 43.478 0.00 0.00 0.00 2.41
7188 7491 3.761218 TGTTGCTTGAAGTCAAAGGTCAA 59.239 39.130 4.16 0.00 35.15 3.18
7243 7547 8.906867 CATCCTAATTTCTTTCAGGATAAAGCA 58.093 33.333 5.12 0.00 44.35 3.91
7267 7571 2.847327 TGCCTGTCTTGAAGAAGGAG 57.153 50.000 20.30 8.28 29.61 3.69
7301 7605 4.373156 AGCAGTGGTAACTTTTCTGGAT 57.627 40.909 0.00 0.00 32.98 3.41
7317 7621 9.994432 CTTTTCTGGATATCATTTGTTAGACAC 57.006 33.333 4.83 0.00 0.00 3.67
7527 7832 6.091305 TGAGAATCATTAAGAACTCTGCAACG 59.909 38.462 0.00 0.00 42.56 4.10
7636 7941 2.534298 CTTGACATGCGAGTGACTAGG 58.466 52.381 0.00 0.00 0.00 3.02
7971 8276 8.995220 GTGACTGTTGACCTATTATGTGTTTAA 58.005 33.333 0.00 0.00 0.00 1.52
8119 8424 8.869897 GGTAAATAAAATAAAGCTTTCAGTGCC 58.130 33.333 16.57 3.37 0.00 5.01
8627 8933 6.563422 TGTTAGTTAACTTGTAGACACACGT 58.437 36.000 14.49 0.00 38.69 4.49
8640 9618 0.320374 CACACGTGTGGATGGTAGGT 59.680 55.000 35.65 0.55 42.10 3.08
8706 9684 9.610705 ATTAGACGTCTCTACTGTAGAAATACA 57.389 33.333 23.89 0.00 33.75 2.29
8758 9766 7.775053 ATTTTTCTAAACACCATCCTAAGCA 57.225 32.000 0.00 0.00 0.00 3.91
8759 9767 6.569179 TTTTCTAAACACCATCCTAAGCAC 57.431 37.500 0.00 0.00 0.00 4.40
8760 9768 4.216411 TCTAAACACCATCCTAAGCACC 57.784 45.455 0.00 0.00 0.00 5.01
8891 9901 1.892819 GAGGACACTGCTGCAGGCTA 61.893 60.000 31.00 0.00 42.39 3.93
9281 10295 1.820056 CTGGCATCCTGCTCAGCTG 60.820 63.158 7.63 7.63 44.28 4.24
9283 10297 3.210528 GCATCCTGCTCAGCTGGC 61.211 66.667 17.71 16.41 45.32 4.85
9284 10298 2.516460 CATCCTGCTCAGCTGGCC 60.516 66.667 17.71 5.71 45.32 5.36
9285 10299 4.172512 ATCCTGCTCAGCTGGCCG 62.173 66.667 17.71 12.15 45.32 6.13
9302 10316 0.599558 CCGCAGGCATGAATTATGGG 59.400 55.000 0.62 0.00 46.14 4.00
9303 10317 0.038892 CGCAGGCATGAATTATGGGC 60.039 55.000 0.62 0.00 37.26 5.36
9304 10318 0.038892 GCAGGCATGAATTATGGGCG 60.039 55.000 0.62 0.00 37.26 6.13
9305 10319 1.608055 CAGGCATGAATTATGGGCGA 58.392 50.000 0.00 0.00 37.26 5.54
9306 10320 1.267806 CAGGCATGAATTATGGGCGAC 59.732 52.381 0.00 0.00 37.26 5.19
9307 10321 1.143684 AGGCATGAATTATGGGCGACT 59.856 47.619 0.00 0.00 37.26 4.18
9308 10322 1.267806 GGCATGAATTATGGGCGACTG 59.732 52.381 0.00 0.00 37.26 3.51
9309 10323 1.335324 GCATGAATTATGGGCGACTGC 60.335 52.381 0.00 0.00 37.26 4.40
9310 10324 1.948834 CATGAATTATGGGCGACTGCA 59.051 47.619 0.00 0.00 45.35 4.41
9311 10325 2.121291 TGAATTATGGGCGACTGCAA 57.879 45.000 0.00 0.00 45.35 4.08
9312 10326 2.653726 TGAATTATGGGCGACTGCAAT 58.346 42.857 0.00 0.00 45.35 3.56
9313 10327 2.618241 TGAATTATGGGCGACTGCAATC 59.382 45.455 0.00 0.00 45.35 2.67
9314 10328 2.346766 ATTATGGGCGACTGCAATCA 57.653 45.000 0.00 0.00 45.35 2.57
9315 10329 2.346766 TTATGGGCGACTGCAATCAT 57.653 45.000 0.00 0.00 45.35 2.45
9316 10330 1.882912 TATGGGCGACTGCAATCATC 58.117 50.000 0.00 0.00 45.35 2.92
9317 10331 0.107066 ATGGGCGACTGCAATCATCA 60.107 50.000 0.00 0.00 45.35 3.07
9318 10332 1.026182 TGGGCGACTGCAATCATCAC 61.026 55.000 0.00 0.00 45.35 3.06
9319 10333 1.026182 GGGCGACTGCAATCATCACA 61.026 55.000 0.00 0.00 45.35 3.58
9320 10334 0.097674 GGCGACTGCAATCATCACAC 59.902 55.000 0.00 0.00 45.35 3.82
9321 10335 0.798159 GCGACTGCAATCATCACACA 59.202 50.000 0.00 0.00 42.15 3.72
9322 10336 1.197492 GCGACTGCAATCATCACACAA 59.803 47.619 0.00 0.00 42.15 3.33
9323 10337 2.843077 CGACTGCAATCATCACACAAC 58.157 47.619 0.00 0.00 0.00 3.32
9324 10338 2.223845 CGACTGCAATCATCACACAACA 59.776 45.455 0.00 0.00 0.00 3.33
9325 10339 3.303924 CGACTGCAATCATCACACAACAA 60.304 43.478 0.00 0.00 0.00 2.83
9326 10340 4.614306 CGACTGCAATCATCACACAACAAT 60.614 41.667 0.00 0.00 0.00 2.71
9327 10341 5.390779 CGACTGCAATCATCACACAACAATA 60.391 40.000 0.00 0.00 0.00 1.90
9328 10342 6.330004 ACTGCAATCATCACACAACAATAA 57.670 33.333 0.00 0.00 0.00 1.40
9329 10343 6.151691 ACTGCAATCATCACACAACAATAAC 58.848 36.000 0.00 0.00 0.00 1.89
9330 10344 6.016024 ACTGCAATCATCACACAACAATAACT 60.016 34.615 0.00 0.00 0.00 2.24
9331 10345 6.151004 TGCAATCATCACACAACAATAACTG 58.849 36.000 0.00 0.00 0.00 3.16
9332 10346 5.574055 GCAATCATCACACAACAATAACTGG 59.426 40.000 0.00 0.00 0.00 4.00
9333 10347 4.764679 TCATCACACAACAATAACTGGC 57.235 40.909 0.00 0.00 0.00 4.85
9334 10348 4.140536 TCATCACACAACAATAACTGGCA 58.859 39.130 0.00 0.00 0.00 4.92
9335 10349 4.766373 TCATCACACAACAATAACTGGCAT 59.234 37.500 0.00 0.00 0.00 4.40
9336 10350 4.764679 TCACACAACAATAACTGGCATC 57.235 40.909 0.00 0.00 0.00 3.91
9337 10351 3.505680 TCACACAACAATAACTGGCATCC 59.494 43.478 0.00 0.00 0.00 3.51
9338 10352 3.507233 CACACAACAATAACTGGCATCCT 59.493 43.478 0.00 0.00 0.00 3.24
9339 10353 3.507233 ACACAACAATAACTGGCATCCTG 59.493 43.478 0.00 0.00 0.00 3.86
9340 10354 2.493278 ACAACAATAACTGGCATCCTGC 59.507 45.455 0.00 0.00 44.08 4.85
9341 10355 2.756760 CAACAATAACTGGCATCCTGCT 59.243 45.455 0.00 0.00 44.28 4.24
9342 10356 2.648059 ACAATAACTGGCATCCTGCTC 58.352 47.619 0.00 0.00 44.28 4.26
9343 10357 2.025981 ACAATAACTGGCATCCTGCTCA 60.026 45.455 0.00 0.00 44.28 4.26
9344 10358 2.617308 CAATAACTGGCATCCTGCTCAG 59.383 50.000 12.85 12.85 44.28 3.35
9345 10359 0.107508 TAACTGGCATCCTGCTCAGC 60.108 55.000 13.81 0.00 44.28 4.26
9346 10360 1.849975 AACTGGCATCCTGCTCAGCT 61.850 55.000 0.00 0.00 44.28 4.24
9347 10361 1.820056 CTGGCATCCTGCTCAGCTG 60.820 63.158 7.63 7.63 44.28 4.24
9348 10362 2.516460 GGCATCCTGCTCAGCTGG 60.516 66.667 16.46 16.46 46.73 4.85
9349 10363 3.210528 GCATCCTGCTCAGCTGGC 61.211 66.667 17.71 16.41 45.32 4.85
9350 10364 2.516460 CATCCTGCTCAGCTGGCC 60.516 66.667 17.71 5.71 45.32 5.36
9351 10365 4.172512 ATCCTGCTCAGCTGGCCG 62.173 66.667 17.71 12.15 45.32 6.13
9368 10382 0.599558 CCGCAGGCATGAATTATGGG 59.400 55.000 0.62 0.00 46.14 4.00
9369 10383 0.599558 CGCAGGCATGAATTATGGGG 59.400 55.000 0.62 0.00 37.26 4.96
9370 10384 1.818913 CGCAGGCATGAATTATGGGGA 60.819 52.381 0.62 0.00 37.26 4.81
9371 10385 2.318908 GCAGGCATGAATTATGGGGAA 58.681 47.619 0.62 0.00 37.26 3.97
9372 10386 2.036346 GCAGGCATGAATTATGGGGAAC 59.964 50.000 0.62 0.00 37.26 3.62
9386 10400 1.492764 GGGAACCGGATCCTCTAACA 58.507 55.000 27.91 0.00 40.86 2.41
9387 10401 2.047830 GGGAACCGGATCCTCTAACAT 58.952 52.381 27.91 0.00 40.86 2.71
9388 10402 3.236896 GGGAACCGGATCCTCTAACATA 58.763 50.000 27.91 0.00 40.86 2.29
9389 10403 3.644738 GGGAACCGGATCCTCTAACATAA 59.355 47.826 27.91 0.00 40.86 1.90
9390 10404 4.102054 GGGAACCGGATCCTCTAACATAAA 59.898 45.833 27.91 0.00 40.86 1.40
9391 10405 5.298347 GGAACCGGATCCTCTAACATAAAG 58.702 45.833 22.87 0.00 36.50 1.85
9392 10406 5.070047 GGAACCGGATCCTCTAACATAAAGA 59.930 44.000 22.87 0.00 36.50 2.52
9393 10407 6.407752 GGAACCGGATCCTCTAACATAAAGAA 60.408 42.308 22.87 0.00 36.50 2.52
9394 10408 6.163135 ACCGGATCCTCTAACATAAAGAAG 57.837 41.667 9.46 0.00 0.00 2.85
9395 10409 5.070580 ACCGGATCCTCTAACATAAAGAAGG 59.929 44.000 9.46 0.00 0.00 3.46
9396 10410 5.511545 CCGGATCCTCTAACATAAAGAAGGG 60.512 48.000 10.75 0.00 0.00 3.95
9397 10411 5.304614 CGGATCCTCTAACATAAAGAAGGGA 59.695 44.000 10.75 0.00 0.00 4.20
9398 10412 6.014156 CGGATCCTCTAACATAAAGAAGGGAT 60.014 42.308 10.75 0.00 33.15 3.85
9399 10413 7.164803 GGATCCTCTAACATAAAGAAGGGATG 58.835 42.308 3.84 0.00 31.55 3.51
9400 10414 7.202139 GGATCCTCTAACATAAAGAAGGGATGT 60.202 40.741 3.84 0.00 31.55 3.06
9401 10415 7.125792 TCCTCTAACATAAAGAAGGGATGTC 57.874 40.000 0.00 0.00 32.67 3.06
9402 10416 6.672218 TCCTCTAACATAAAGAAGGGATGTCA 59.328 38.462 0.00 0.00 32.67 3.58
9403 10417 7.348274 TCCTCTAACATAAAGAAGGGATGTCAT 59.652 37.037 0.00 0.00 32.67 3.06
9404 10418 7.443575 CCTCTAACATAAAGAAGGGATGTCATG 59.556 40.741 0.00 0.00 32.67 3.07
9405 10419 7.282585 TCTAACATAAAGAAGGGATGTCATGG 58.717 38.462 0.00 0.00 32.67 3.66
9406 10420 5.456921 ACATAAAGAAGGGATGTCATGGT 57.543 39.130 0.00 0.00 0.00 3.55
9407 10421 6.575244 ACATAAAGAAGGGATGTCATGGTA 57.425 37.500 0.00 0.00 0.00 3.25
9408 10422 6.357367 ACATAAAGAAGGGATGTCATGGTAC 58.643 40.000 0.00 0.00 0.00 3.34
9409 10423 6.158695 ACATAAAGAAGGGATGTCATGGTACT 59.841 38.462 0.00 0.00 0.00 2.73
9410 10424 7.347222 ACATAAAGAAGGGATGTCATGGTACTA 59.653 37.037 0.00 0.00 0.00 1.82
9411 10425 5.615925 AAGAAGGGATGTCATGGTACTAC 57.384 43.478 0.00 0.00 0.00 2.73
9412 10426 4.620723 AGAAGGGATGTCATGGTACTACA 58.379 43.478 0.00 0.00 0.00 2.74
9413 10427 4.651503 AGAAGGGATGTCATGGTACTACAG 59.348 45.833 0.00 0.00 0.00 2.74
9414 10428 3.995636 AGGGATGTCATGGTACTACAGT 58.004 45.455 0.00 0.00 0.00 3.55
9415 10429 3.706594 AGGGATGTCATGGTACTACAGTG 59.293 47.826 0.00 0.00 0.00 3.66
9416 10430 3.458189 GGATGTCATGGTACTACAGTGC 58.542 50.000 0.00 0.00 0.00 4.40
9417 10431 3.133003 GGATGTCATGGTACTACAGTGCT 59.867 47.826 0.00 0.00 0.00 4.40
9418 10432 4.341235 GGATGTCATGGTACTACAGTGCTA 59.659 45.833 0.00 0.00 0.00 3.49
9419 10433 4.983671 TGTCATGGTACTACAGTGCTAG 57.016 45.455 0.00 0.00 0.00 3.42
9420 10434 4.341487 TGTCATGGTACTACAGTGCTAGT 58.659 43.478 9.40 9.40 0.00 2.57
9421 10435 4.398358 TGTCATGGTACTACAGTGCTAGTC 59.602 45.833 8.17 3.06 0.00 2.59
9422 10436 4.641094 GTCATGGTACTACAGTGCTAGTCT 59.359 45.833 8.17 0.00 0.00 3.24
9423 10437 4.640647 TCATGGTACTACAGTGCTAGTCTG 59.359 45.833 12.99 12.99 38.68 3.51
9424 10438 4.030314 TGGTACTACAGTGCTAGTCTGT 57.970 45.455 20.30 20.30 46.10 3.41
9425 10439 4.404640 TGGTACTACAGTGCTAGTCTGTT 58.595 43.478 21.17 11.43 42.50 3.16
9426 10440 5.563592 TGGTACTACAGTGCTAGTCTGTTA 58.436 41.667 21.17 10.70 42.50 2.41
9427 10441 6.005823 TGGTACTACAGTGCTAGTCTGTTAA 58.994 40.000 21.17 9.10 42.50 2.01
9428 10442 6.662234 TGGTACTACAGTGCTAGTCTGTTAAT 59.338 38.462 21.17 12.93 42.50 1.40
9429 10443 7.830697 TGGTACTACAGTGCTAGTCTGTTAATA 59.169 37.037 21.17 12.25 42.50 0.98
9430 10444 8.344098 GGTACTACAGTGCTAGTCTGTTAATAG 58.656 40.741 21.17 16.22 42.50 1.73
9431 10445 7.336161 ACTACAGTGCTAGTCTGTTAATAGG 57.664 40.000 21.17 11.29 42.50 2.57
9432 10446 6.890814 ACTACAGTGCTAGTCTGTTAATAGGT 59.109 38.462 21.17 11.70 42.50 3.08
9433 10447 6.607004 ACAGTGCTAGTCTGTTAATAGGTT 57.393 37.500 14.01 0.00 42.50 3.50
9434 10448 6.398918 ACAGTGCTAGTCTGTTAATAGGTTG 58.601 40.000 14.01 0.00 42.50 3.77
9435 10449 6.014499 ACAGTGCTAGTCTGTTAATAGGTTGT 60.014 38.462 14.01 0.00 42.50 3.32
9436 10450 6.874134 CAGTGCTAGTCTGTTAATAGGTTGTT 59.126 38.462 0.00 0.00 0.00 2.83
9437 10451 7.387948 CAGTGCTAGTCTGTTAATAGGTTGTTT 59.612 37.037 0.00 0.00 0.00 2.83
9438 10452 8.591072 AGTGCTAGTCTGTTAATAGGTTGTTTA 58.409 33.333 0.00 0.00 0.00 2.01
9439 10453 9.211485 GTGCTAGTCTGTTAATAGGTTGTTTAA 57.789 33.333 0.00 0.00 0.00 1.52
9440 10454 9.953565 TGCTAGTCTGTTAATAGGTTGTTTAAT 57.046 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.803155 TTCGCACATGACTGCCTCCC 62.803 60.000 0.00 0.00 33.18 4.30
1 2 1.375908 TTCGCACATGACTGCCTCC 60.376 57.895 0.00 0.00 33.18 4.30
2 3 1.639298 GGTTCGCACATGACTGCCTC 61.639 60.000 0.00 0.00 33.18 4.70
3 4 1.672356 GGTTCGCACATGACTGCCT 60.672 57.895 0.00 0.00 33.18 4.75
4 5 1.639298 GAGGTTCGCACATGACTGCC 61.639 60.000 0.00 0.00 33.18 4.85
5 6 1.639298 GGAGGTTCGCACATGACTGC 61.639 60.000 0.00 0.00 0.00 4.40
6 7 0.320683 TGGAGGTTCGCACATGACTG 60.321 55.000 0.00 0.00 0.00 3.51
7 8 0.615331 ATGGAGGTTCGCACATGACT 59.385 50.000 0.00 0.00 0.00 3.41
8 9 2.205074 CTATGGAGGTTCGCACATGAC 58.795 52.381 0.00 0.00 0.00 3.06
9 10 1.473257 GCTATGGAGGTTCGCACATGA 60.473 52.381 0.00 0.00 0.00 3.07
10 11 0.940126 GCTATGGAGGTTCGCACATG 59.060 55.000 0.00 0.00 0.00 3.21
11 12 0.541392 TGCTATGGAGGTTCGCACAT 59.459 50.000 0.00 0.00 0.00 3.21
12 13 1.979262 TGCTATGGAGGTTCGCACA 59.021 52.632 0.00 0.00 0.00 4.57
13 14 2.384203 GTGCTATGGAGGTTCGCAC 58.616 57.895 0.00 0.00 43.22 5.34
14 15 1.480789 TAGTGCTATGGAGGTTCGCA 58.519 50.000 0.00 0.00 0.00 5.10
15 16 2.408050 CATAGTGCTATGGAGGTTCGC 58.592 52.381 10.51 0.00 39.30 4.70
16 17 2.408050 GCATAGTGCTATGGAGGTTCG 58.592 52.381 17.72 0.00 42.32 3.95
28 29 2.979813 CCAAACAAAACGAGCATAGTGC 59.020 45.455 0.00 0.00 45.46 4.40
29 30 3.564511 CCCAAACAAAACGAGCATAGTG 58.435 45.455 0.00 0.00 0.00 2.74
30 31 2.556622 CCCCAAACAAAACGAGCATAGT 59.443 45.455 0.00 0.00 0.00 2.12
31 32 2.671070 GCCCCAAACAAAACGAGCATAG 60.671 50.000 0.00 0.00 0.00 2.23
32 33 1.271102 GCCCCAAACAAAACGAGCATA 59.729 47.619 0.00 0.00 0.00 3.14
33 34 0.033366 GCCCCAAACAAAACGAGCAT 59.967 50.000 0.00 0.00 0.00 3.79
34 35 1.439644 GCCCCAAACAAAACGAGCA 59.560 52.632 0.00 0.00 0.00 4.26
35 36 1.300620 GGCCCCAAACAAAACGAGC 60.301 57.895 0.00 0.00 0.00 5.03
36 37 0.750249 AAGGCCCCAAACAAAACGAG 59.250 50.000 0.00 0.00 0.00 4.18
37 38 2.068834 TAAGGCCCCAAACAAAACGA 57.931 45.000 0.00 0.00 0.00 3.85
38 39 2.892784 TTAAGGCCCCAAACAAAACG 57.107 45.000 0.00 0.00 0.00 3.60
39 40 3.252215 GCAATTAAGGCCCCAAACAAAAC 59.748 43.478 0.00 0.00 0.00 2.43
40 41 3.481453 GCAATTAAGGCCCCAAACAAAA 58.519 40.909 0.00 0.00 0.00 2.44
41 42 2.224646 GGCAATTAAGGCCCCAAACAAA 60.225 45.455 0.00 0.00 45.87 2.83
42 43 1.349357 GGCAATTAAGGCCCCAAACAA 59.651 47.619 0.00 0.00 45.87 2.83
43 44 0.980423 GGCAATTAAGGCCCCAAACA 59.020 50.000 0.00 0.00 45.87 2.83
44 45 3.853104 GGCAATTAAGGCCCCAAAC 57.147 52.632 0.00 0.00 45.87 2.93
51 52 4.743057 AAGAAATCTGGGCAATTAAGGC 57.257 40.909 0.00 0.00 0.00 4.35
56 57 5.767277 ATTGGAAAGAAATCTGGGCAATT 57.233 34.783 0.00 0.00 0.00 2.32
63 64 7.342799 TGGGGAGAAATATTGGAAAGAAATCTG 59.657 37.037 0.00 0.00 0.00 2.90
87 88 2.036733 TCACGTCAAGTAGGGAAGTTGG 59.963 50.000 0.00 0.00 38.79 3.77
108 109 3.826157 CACAATATGGTTGGTTGTGGACT 59.174 43.478 9.04 0.00 45.41 3.85
109 110 4.173036 CACAATATGGTTGGTTGTGGAC 57.827 45.455 9.04 0.00 45.41 4.02
116 117 6.493115 TCTTTTCATCACACAATATGGTTGGT 59.507 34.615 0.00 0.00 0.00 3.67
120 121 9.028284 AGATTTCTTTTCATCACACAATATGGT 57.972 29.630 0.00 0.00 0.00 3.55
180 181 6.294787 CCTCACACTCGCTTTGGACTATATAT 60.295 42.308 0.00 0.00 0.00 0.86
194 195 2.357034 TTTCGGCCTCACACTCGC 60.357 61.111 0.00 0.00 0.00 5.03
210 211 4.708421 CCATGGATGAGAGGATTTTGTGTT 59.292 41.667 5.56 0.00 0.00 3.32
220 221 1.475169 TAGCGGCCATGGATGAGAGG 61.475 60.000 18.40 0.00 0.00 3.69
226 227 1.755179 GCATATTAGCGGCCATGGAT 58.245 50.000 18.40 0.54 0.00 3.41
242 243 9.109393 ACTGTTGAACTCATATTATAAACGCAT 57.891 29.630 0.00 0.00 0.00 4.73
250 251 8.546083 AGAGGAGACTGTTGAACTCATATTAT 57.454 34.615 0.00 0.00 44.43 1.28
264 265 4.102367 AGCTTTCTTTCAAGAGGAGACTGT 59.898 41.667 6.32 0.00 44.43 3.55
275 276 9.520204 CAAGAAAATGTTAGAGCTTTCTTTCAA 57.480 29.630 6.03 0.00 42.57 2.69
276 277 8.137437 CCAAGAAAATGTTAGAGCTTTCTTTCA 58.863 33.333 6.03 0.00 42.57 2.69
277 278 8.138074 ACCAAGAAAATGTTAGAGCTTTCTTTC 58.862 33.333 6.03 0.48 42.57 2.62
278 279 8.011844 ACCAAGAAAATGTTAGAGCTTTCTTT 57.988 30.769 6.03 0.00 42.57 2.52
301 302 2.214376 TGGACATGGTCAATGGAACC 57.786 50.000 0.00 0.00 40.94 3.62
303 304 2.311243 TGGATGGACATGGTCAATGGAA 59.689 45.455 0.00 0.00 40.94 3.53
308 309 0.980423 TCGTGGATGGACATGGTCAA 59.020 50.000 0.00 0.00 33.68 3.18
314 315 0.392998 GTTGCCTCGTGGATGGACAT 60.393 55.000 7.92 0.00 34.57 3.06
352 353 4.394920 TGTTGCGGACTCTATTTCCAATTC 59.605 41.667 0.00 0.00 31.94 2.17
358 359 4.026804 CGTACATGTTGCGGACTCTATTTC 60.027 45.833 2.30 0.00 0.00 2.17
370 371 2.782615 GCCGACCGTACATGTTGC 59.217 61.111 2.30 0.00 0.00 4.17
382 383 0.458669 TTGGATTCCTAGACGCCGAC 59.541 55.000 3.95 0.00 0.00 4.79
384 385 3.380479 TTATTGGATTCCTAGACGCCG 57.620 47.619 3.95 0.00 0.00 6.46
406 407 8.408043 TGGCCATAAGGTTAAAATCATGATAG 57.592 34.615 9.04 0.00 37.19 2.08
408 409 7.860649 ATGGCCATAAGGTTAAAATCATGAT 57.139 32.000 19.18 1.18 37.19 2.45
425 426 2.233271 CCTCGAATTGCTAATGGCCAT 58.767 47.619 14.09 14.09 40.92 4.40
442 443 1.970640 ACTGCAATTTTTGGGACCCTC 59.029 47.619 13.00 0.00 0.00 4.30
443 444 1.693606 CACTGCAATTTTTGGGACCCT 59.306 47.619 13.00 0.00 0.00 4.34
444 445 1.691434 TCACTGCAATTTTTGGGACCC 59.309 47.619 2.45 2.45 0.00 4.46
445 446 3.467374 TTCACTGCAATTTTTGGGACC 57.533 42.857 0.00 0.00 0.00 4.46
466 544 5.278120 CGGGTTCTCAAAGGACGTTATTTTT 60.278 40.000 0.00 0.00 0.00 1.94
474 552 1.145803 GTTCGGGTTCTCAAAGGACG 58.854 55.000 0.00 0.00 0.00 4.79
487 565 2.744202 CCAGATTCTCTTTGTGTTCGGG 59.256 50.000 0.00 0.00 0.00 5.14
489 567 3.070018 AGCCAGATTCTCTTTGTGTTCG 58.930 45.455 0.00 0.00 0.00 3.95
520 598 3.394606 ACTTGGTAGACAATGTTGGAGGT 59.605 43.478 0.00 0.00 38.65 3.85
542 620 5.755409 TTTCACTCTTCAACCAGGCTATA 57.245 39.130 0.00 0.00 0.00 1.31
547 625 6.142817 CGTAATTTTTCACTCTTCAACCAGG 58.857 40.000 0.00 0.00 0.00 4.45
568 646 2.307496 TGTAGGACTGGGTTTCCGTA 57.693 50.000 0.00 0.00 38.29 4.02
570 648 1.944430 GCTTGTAGGACTGGGTTTCCG 60.944 57.143 0.00 0.00 38.29 4.30
613 691 7.942341 AGTAGGAAATTTCACCAGTGTTTATGA 59.058 33.333 19.49 0.00 0.00 2.15
617 695 8.706322 ATTAGTAGGAAATTTCACCAGTGTTT 57.294 30.769 19.49 0.00 0.00 2.83
630 708 9.686683 AGCTGTTGTCAATTATTAGTAGGAAAT 57.313 29.630 0.00 0.00 0.00 2.17
648 745 4.225942 TGAAGGGATGAGATAAGCTGTTGT 59.774 41.667 0.00 0.00 0.00 3.32
660 757 5.530171 CCATTTCTACATGTGAAGGGATGAG 59.470 44.000 9.11 0.00 0.00 2.90
726 825 0.250166 CCCGAAACTCCAACGGTCTT 60.250 55.000 0.00 0.00 44.34 3.01
757 856 7.646130 TCTTGACGTGAAACAAAATTGGTATTC 59.354 33.333 0.00 1.00 35.74 1.75
1049 1149 2.821378 TCCTTCACGGAATCGACAGTAA 59.179 45.455 0.00 0.00 39.40 2.24
1050 1150 2.439409 TCCTTCACGGAATCGACAGTA 58.561 47.619 0.00 0.00 39.40 2.74
1193 1293 0.321671 CTCGGCACCCTCTTCTTCAA 59.678 55.000 0.00 0.00 0.00 2.69
1202 1302 3.322466 CCACTTCCTCGGCACCCT 61.322 66.667 0.00 0.00 0.00 4.34
1342 1442 1.149101 ACAGAAACATCCACCAGGGT 58.851 50.000 0.00 0.00 38.11 4.34
1559 1659 0.322816 CTTGTCACCATCCACCCTGG 60.323 60.000 0.00 0.00 39.43 4.45
1601 1701 4.649218 TCTTATCATCTCCACCATTGTCGA 59.351 41.667 0.00 0.00 0.00 4.20
1618 1718 4.464008 TCACCATTGGCATCCTTCTTATC 58.536 43.478 1.54 0.00 0.00 1.75
1872 1972 8.967664 TTATACAAACATAAAGATAAGCCCGT 57.032 30.769 0.00 0.00 0.00 5.28
2275 2386 6.107343 GGCTCCCAGTAAACTAGTTTTAGAG 58.893 44.000 25.07 21.00 34.23 2.43
2298 2409 0.108207 CTGATCTGGGCTGCTTAGGG 59.892 60.000 0.00 0.00 0.00 3.53
2486 2606 2.144833 TTTAGACGCGCCGAAGTGGA 62.145 55.000 5.73 0.00 42.00 4.02
2499 2619 1.597663 AGTGTGTTGCGTGCTTTAGAC 59.402 47.619 0.00 0.00 0.00 2.59
2508 2628 0.944386 GATGGTTCAGTGTGTTGCGT 59.056 50.000 0.00 0.00 0.00 5.24
2522 2642 1.069204 CAGTAGCGGTGCATAGATGGT 59.931 52.381 5.29 0.00 0.00 3.55
2551 2671 2.201732 CGTGGCTATGATAACTTGCGT 58.798 47.619 0.00 0.00 0.00 5.24
2720 2840 1.342076 ACCTCTGGGTCTAGCGAATGA 60.342 52.381 0.00 0.00 43.38 2.57
2774 2894 2.425143 CACATGGTGGTGCCTAAGAT 57.575 50.000 0.00 0.00 38.35 2.40
2803 2923 0.975544 CGACACGAGTAGCAAGAACG 59.024 55.000 0.00 0.00 0.00 3.95
2806 2926 4.861883 GCGACACGAGTAGCAAGA 57.138 55.556 12.73 0.00 44.56 3.02
2928 3048 1.378119 CAGCTCCATGGCAAGCAGA 60.378 57.895 23.41 0.00 41.06 4.26
3142 3263 2.172851 AATCAAACTACACGCCGGAA 57.827 45.000 5.05 0.00 0.00 4.30
3185 3306 1.524621 GATCCCGCCAGTGATGTGG 60.525 63.158 0.00 0.00 41.01 4.17
3497 3623 1.242076 ACTTACAGCAGCTTGCCAAG 58.758 50.000 0.00 0.00 46.52 3.61
3581 3709 4.513198 TCTCGGCTTTTACCCATTTTTG 57.487 40.909 0.00 0.00 0.00 2.44
3757 3895 7.983307 AGAAGCACTCTTATCAATAGCAAAAG 58.017 34.615 0.00 0.00 31.48 2.27
4018 4159 6.385649 AAAACTGAATTTTTACTCCTCGCA 57.614 33.333 0.00 0.00 37.18 5.10
4064 4206 9.672673 CCCGGATTTTCTCATAGATAAATGTAT 57.327 33.333 0.73 0.00 0.00 2.29
4111 4253 4.088634 CCTTGGATCATTTGGGACTTTCA 58.911 43.478 0.00 0.00 0.00 2.69
4722 4875 4.137879 CAGACCATGCTGCTAGGC 57.862 61.111 10.19 4.67 0.00 3.93
4922 5075 4.092968 GGTCGATCCATAAGACAAACACAC 59.907 45.833 0.00 0.00 36.68 3.82
4948 5101 6.655003 ACAAATAACTTACAGGATGGACACAG 59.345 38.462 0.00 0.00 43.62 3.66
4954 5107 8.739039 TCATTCAACAAATAACTTACAGGATGG 58.261 33.333 0.00 0.00 43.62 3.51
5050 5203 0.105964 TTAGTGCAAACCAGGGGCAA 60.106 50.000 4.45 0.00 39.57 4.52
5171 5324 8.926710 CAAGTCTCTATTTAAGTTGTTCATCGT 58.073 33.333 0.00 0.00 0.00 3.73
5264 5417 9.673454 CACAGAGGGTGTTAAATTAAGTAAAAC 57.327 33.333 0.00 0.00 42.75 2.43
5947 6111 4.985538 TGACTTTCCTCTTAAGCAACCAT 58.014 39.130 0.00 0.00 0.00 3.55
6055 6219 6.486253 AGTAAACACATGCATACTTCTGTG 57.514 37.500 13.02 13.02 43.54 3.66
6145 6317 4.216042 TGTCACCTGTTAATGCAACTCATG 59.784 41.667 0.00 0.00 38.05 3.07
6231 6403 9.836864 TTGCACAATTACAATAGAGATACATCT 57.163 29.630 0.00 0.00 40.50 2.90
6338 6548 2.297033 GGTCCATGAAACAGTTGTGCAT 59.703 45.455 0.00 0.00 0.00 3.96
6461 6671 2.300433 TCATGGCATTCATAGCACACC 58.700 47.619 0.00 0.00 34.12 4.16
6539 6749 6.553476 TGGCATAGTTCTATGCTAGGAACTTA 59.447 38.462 30.65 12.80 46.55 2.24
6572 6782 7.337689 TGAACAAGATTACCAATTCTGGAGATG 59.662 37.037 0.00 0.00 46.92 2.90
6600 6810 6.508030 TCCCCATAACATGTAGCATTAAGA 57.492 37.500 0.00 0.00 0.00 2.10
6661 6871 1.345741 TCTTCCCTGCTGAGAACACAG 59.654 52.381 0.00 0.00 40.43 3.66
6684 6894 7.985184 AGGTTTACAAATATATTGCACTCTCGA 59.015 33.333 0.00 0.00 0.00 4.04
6939 7149 6.095440 GCCCAAAAGTTGCTCATCTAATAAGA 59.905 38.462 0.00 0.00 35.80 2.10
6942 7152 5.509498 AGCCCAAAAGTTGCTCATCTAATA 58.491 37.500 0.00 0.00 0.00 0.98
6943 7153 4.347607 AGCCCAAAAGTTGCTCATCTAAT 58.652 39.130 0.00 0.00 0.00 1.73
6946 7156 2.298163 CAAGCCCAAAAGTTGCTCATCT 59.702 45.455 0.00 0.00 33.36 2.90
6947 7157 2.297033 TCAAGCCCAAAAGTTGCTCATC 59.703 45.455 0.00 0.00 33.36 2.92
6948 7158 2.298163 CTCAAGCCCAAAAGTTGCTCAT 59.702 45.455 0.00 0.00 33.36 2.90
6949 7159 1.682854 CTCAAGCCCAAAAGTTGCTCA 59.317 47.619 0.00 0.00 33.36 4.26
6950 7160 1.956477 TCTCAAGCCCAAAAGTTGCTC 59.044 47.619 0.00 0.00 33.36 4.26
6951 7161 2.071778 TCTCAAGCCCAAAAGTTGCT 57.928 45.000 0.00 0.00 36.79 3.91
6952 7162 2.888834 TTCTCAAGCCCAAAAGTTGC 57.111 45.000 0.00 0.00 0.00 4.17
6953 7163 5.009854 TCTTTTCTCAAGCCCAAAAGTTG 57.990 39.130 0.00 0.00 38.02 3.16
6954 7164 4.100035 CCTCTTTTCTCAAGCCCAAAAGTT 59.900 41.667 0.00 0.00 38.02 2.66
6955 7165 3.638627 CCTCTTTTCTCAAGCCCAAAAGT 59.361 43.478 0.00 0.00 38.02 2.66
6956 7166 3.638627 ACCTCTTTTCTCAAGCCCAAAAG 59.361 43.478 0.00 0.00 38.12 2.27
6957 7167 3.642141 ACCTCTTTTCTCAAGCCCAAAA 58.358 40.909 0.00 0.00 0.00 2.44
6959 7169 2.958355 CAACCTCTTTTCTCAAGCCCAA 59.042 45.455 0.00 0.00 0.00 4.12
6960 7170 2.091885 ACAACCTCTTTTCTCAAGCCCA 60.092 45.455 0.00 0.00 0.00 5.36
6961 7171 2.587522 ACAACCTCTTTTCTCAAGCCC 58.412 47.619 0.00 0.00 0.00 5.19
6962 7172 5.966742 ATTACAACCTCTTTTCTCAAGCC 57.033 39.130 0.00 0.00 0.00 4.35
6963 7173 8.648557 AAAAATTACAACCTCTTTTCTCAAGC 57.351 30.769 0.00 0.00 0.00 4.01
6970 7180 9.914131 GCTCATCTAAAAATTACAACCTCTTTT 57.086 29.630 0.00 0.00 0.00 2.27
6972 7182 8.635765 TGCTCATCTAAAAATTACAACCTCTT 57.364 30.769 0.00 0.00 0.00 2.85
6973 7183 8.515414 GTTGCTCATCTAAAAATTACAACCTCT 58.485 33.333 0.00 0.00 31.12 3.69
6974 7184 8.515414 AGTTGCTCATCTAAAAATTACAACCTC 58.485 33.333 0.00 0.00 36.43 3.85
6976 7186 9.476202 AAAGTTGCTCATCTAAAAATTACAACC 57.524 29.630 0.00 0.00 36.43 3.77
6979 7189 9.474920 CCAAAAGTTGCTCATCTAAAAATTACA 57.525 29.630 0.00 0.00 0.00 2.41
6980 7190 8.925700 CCCAAAAGTTGCTCATCTAAAAATTAC 58.074 33.333 0.00 0.00 0.00 1.89
6981 7191 7.602265 GCCCAAAAGTTGCTCATCTAAAAATTA 59.398 33.333 0.00 0.00 0.00 1.40
6983 7193 5.934043 GCCCAAAAGTTGCTCATCTAAAAAT 59.066 36.000 0.00 0.00 0.00 1.82
7243 7547 3.370315 CCTTCTTCAAGACAGGCATAGCT 60.370 47.826 0.00 0.00 0.00 3.32
7267 7571 6.761242 AGTTACCACTGCTTTTTGGATTTTTC 59.239 34.615 0.00 0.00 36.28 2.29
7301 7605 7.160049 TGTAAACGGGTGTCTAACAAATGATA 58.840 34.615 0.00 0.00 0.00 2.15
7482 7786 7.288810 TCTCAACAGCAATGAAATAAAAGGT 57.711 32.000 0.00 0.00 0.00 3.50
7527 7832 0.749454 CTCTATGGGCTGGTGGCAAC 60.749 60.000 0.00 0.00 44.01 4.17
7636 7941 0.029989 ACCAAGGGGATAGGAGGGAC 60.030 60.000 0.00 0.00 38.05 4.46
7971 8276 2.008242 TGGTTAGCCATGCTTGGTTT 57.992 45.000 19.05 10.85 45.57 3.27
8108 8413 0.249031 ACTTTTGCGGCACTGAAAGC 60.249 50.000 20.03 0.00 37.60 3.51
8119 8424 2.293122 TCTCACCATTCCAACTTTTGCG 59.707 45.455 0.00 0.00 0.00 4.85
8310 8615 6.215845 AGTATCAACAAATCTGGTGCAAAAC 58.784 36.000 0.00 0.00 40.36 2.43
8627 8933 3.512496 TGTACAAGACCTACCATCCACA 58.488 45.455 0.00 0.00 0.00 4.17
8640 9618 6.530120 TCTAAGCACCTTGAATTGTACAAGA 58.470 36.000 14.65 0.00 44.92 3.02
8706 9684 3.641436 GGGTTTTTCTGAAGGACCAATGT 59.359 43.478 19.39 0.00 32.00 2.71
8754 9762 3.813443 CCTCATACAATGCTAGGTGCTT 58.187 45.455 0.00 0.00 43.37 3.91
8755 9763 2.486191 GCCTCATACAATGCTAGGTGCT 60.486 50.000 0.00 0.00 43.37 4.40
8756 9764 1.876156 GCCTCATACAATGCTAGGTGC 59.124 52.381 0.00 0.00 43.25 5.01
8757 9765 2.105477 AGGCCTCATACAATGCTAGGTG 59.895 50.000 0.00 0.00 29.46 4.00
8758 9766 2.105477 CAGGCCTCATACAATGCTAGGT 59.895 50.000 0.00 0.00 29.46 3.08
8759 9767 2.551721 CCAGGCCTCATACAATGCTAGG 60.552 54.545 0.00 0.00 0.00 3.02
8760 9768 2.551721 CCCAGGCCTCATACAATGCTAG 60.552 54.545 0.00 0.00 0.00 3.42
8827 9835 2.715532 GAAGCTCCACACGTCAGCCA 62.716 60.000 0.00 0.00 33.28 4.75
8891 9901 1.885850 GGTCGAAGCACCACACGTT 60.886 57.895 0.00 0.00 36.32 3.99
9006 10016 3.304659 CGCTGCAACAACTTCAAGGTTAT 60.305 43.478 0.00 0.00 0.00 1.89
9012 10022 3.266541 CATACGCTGCAACAACTTCAA 57.733 42.857 0.00 0.00 0.00 2.69
9013 10023 2.967459 CATACGCTGCAACAACTTCA 57.033 45.000 0.00 0.00 0.00 3.02
9057 10067 3.120130 CGCTTTTAATACTGTCGGGCAAA 60.120 43.478 0.00 0.00 0.00 3.68
9151 10161 5.460748 GGCGCCATTTTGTTGTATTTATACC 59.539 40.000 24.80 0.00 32.33 2.73
9172 10183 1.286880 CTGCTTTTTGTGAGGGGCG 59.713 57.895 0.00 0.00 0.00 6.13
9283 10297 0.599558 CCCATAATTCATGCCTGCGG 59.400 55.000 0.00 0.00 32.84 5.69
9284 10298 0.038892 GCCCATAATTCATGCCTGCG 60.039 55.000 0.00 0.00 32.84 5.18
9285 10299 0.038892 CGCCCATAATTCATGCCTGC 60.039 55.000 0.00 0.00 32.84 4.85
9286 10300 1.267806 GTCGCCCATAATTCATGCCTG 59.732 52.381 0.00 0.00 32.84 4.85
9287 10301 1.143684 AGTCGCCCATAATTCATGCCT 59.856 47.619 0.00 0.00 32.84 4.75
9288 10302 1.267806 CAGTCGCCCATAATTCATGCC 59.732 52.381 0.00 0.00 32.84 4.40
9289 10303 1.335324 GCAGTCGCCCATAATTCATGC 60.335 52.381 0.00 0.00 32.84 4.06
9290 10304 1.948834 TGCAGTCGCCCATAATTCATG 59.051 47.619 0.00 0.00 37.32 3.07
9291 10305 2.346766 TGCAGTCGCCCATAATTCAT 57.653 45.000 0.00 0.00 37.32 2.57
9292 10306 2.121291 TTGCAGTCGCCCATAATTCA 57.879 45.000 0.00 0.00 37.32 2.57
9293 10307 2.618241 TGATTGCAGTCGCCCATAATTC 59.382 45.455 4.63 0.00 37.32 2.17
9294 10308 2.653726 TGATTGCAGTCGCCCATAATT 58.346 42.857 4.63 0.00 37.32 1.40
9295 10309 2.346766 TGATTGCAGTCGCCCATAAT 57.653 45.000 4.63 0.00 37.32 1.28
9296 10310 2.221169 GATGATTGCAGTCGCCCATAA 58.779 47.619 4.63 0.00 37.32 1.90
9297 10311 1.140652 TGATGATTGCAGTCGCCCATA 59.859 47.619 4.63 0.00 37.32 2.74
9298 10312 0.107066 TGATGATTGCAGTCGCCCAT 60.107 50.000 4.63 0.00 37.32 4.00
9299 10313 1.026182 GTGATGATTGCAGTCGCCCA 61.026 55.000 4.63 0.00 37.32 5.36
9300 10314 1.026182 TGTGATGATTGCAGTCGCCC 61.026 55.000 4.63 0.00 37.32 6.13
9301 10315 0.097674 GTGTGATGATTGCAGTCGCC 59.902 55.000 4.63 0.00 37.32 5.54
9302 10316 0.798159 TGTGTGATGATTGCAGTCGC 59.202 50.000 4.63 0.10 39.24 5.19
9303 10317 2.223845 TGTTGTGTGATGATTGCAGTCG 59.776 45.455 4.63 0.00 0.00 4.18
9304 10318 3.902261 TGTTGTGTGATGATTGCAGTC 57.098 42.857 1.56 1.56 0.00 3.51
9305 10319 4.859304 ATTGTTGTGTGATGATTGCAGT 57.141 36.364 0.00 0.00 0.00 4.40
9306 10320 6.307077 CAGTTATTGTTGTGTGATGATTGCAG 59.693 38.462 0.00 0.00 0.00 4.41
9307 10321 6.151004 CAGTTATTGTTGTGTGATGATTGCA 58.849 36.000 0.00 0.00 0.00 4.08
9308 10322 5.574055 CCAGTTATTGTTGTGTGATGATTGC 59.426 40.000 0.00 0.00 0.00 3.56
9309 10323 5.574055 GCCAGTTATTGTTGTGTGATGATTG 59.426 40.000 0.00 0.00 0.00 2.67
9310 10324 5.243507 TGCCAGTTATTGTTGTGTGATGATT 59.756 36.000 0.00 0.00 0.00 2.57
9311 10325 4.766373 TGCCAGTTATTGTTGTGTGATGAT 59.234 37.500 0.00 0.00 0.00 2.45
9312 10326 4.140536 TGCCAGTTATTGTTGTGTGATGA 58.859 39.130 0.00 0.00 0.00 2.92
9313 10327 4.502171 TGCCAGTTATTGTTGTGTGATG 57.498 40.909 0.00 0.00 0.00 3.07
9314 10328 4.158394 GGATGCCAGTTATTGTTGTGTGAT 59.842 41.667 0.00 0.00 0.00 3.06
9315 10329 3.505680 GGATGCCAGTTATTGTTGTGTGA 59.494 43.478 0.00 0.00 0.00 3.58
9316 10330 3.507233 AGGATGCCAGTTATTGTTGTGTG 59.493 43.478 0.00 0.00 0.00 3.82
9317 10331 3.507233 CAGGATGCCAGTTATTGTTGTGT 59.493 43.478 0.00 0.00 0.00 3.72
9318 10332 4.100707 CAGGATGCCAGTTATTGTTGTG 57.899 45.455 0.00 0.00 0.00 3.33
9333 10347 2.516460 GGCCAGCTGAGCAGGATG 60.516 66.667 20.79 1.85 37.40 3.51
9334 10348 4.172512 CGGCCAGCTGAGCAGGAT 62.173 66.667 20.79 0.00 37.40 3.24
9349 10363 0.599558 CCCATAATTCATGCCTGCGG 59.400 55.000 0.00 0.00 32.84 5.69
9350 10364 0.599558 CCCCATAATTCATGCCTGCG 59.400 55.000 0.00 0.00 32.84 5.18
9351 10365 1.999648 TCCCCATAATTCATGCCTGC 58.000 50.000 0.00 0.00 32.84 4.85
9352 10366 2.629617 GGTTCCCCATAATTCATGCCTG 59.370 50.000 0.00 0.00 32.84 4.85
9353 10367 2.752829 CGGTTCCCCATAATTCATGCCT 60.753 50.000 0.00 0.00 32.84 4.75
9354 10368 1.613437 CGGTTCCCCATAATTCATGCC 59.387 52.381 0.00 0.00 32.84 4.40
9355 10369 1.613437 CCGGTTCCCCATAATTCATGC 59.387 52.381 0.00 0.00 32.84 4.06
9356 10370 3.222173 TCCGGTTCCCCATAATTCATG 57.778 47.619 0.00 0.00 0.00 3.07
9357 10371 3.245264 GGATCCGGTTCCCCATAATTCAT 60.245 47.826 19.41 0.00 0.00 2.57
9358 10372 2.107552 GGATCCGGTTCCCCATAATTCA 59.892 50.000 19.41 0.00 0.00 2.57
9359 10373 2.375509 AGGATCCGGTTCCCCATAATTC 59.624 50.000 25.10 0.00 36.35 2.17
9360 10374 2.375509 GAGGATCCGGTTCCCCATAATT 59.624 50.000 25.10 7.37 36.35 1.40
9361 10375 1.985895 GAGGATCCGGTTCCCCATAAT 59.014 52.381 25.10 8.08 36.35 1.28
9362 10376 1.061657 AGAGGATCCGGTTCCCCATAA 60.062 52.381 25.10 0.00 36.35 1.90
9363 10377 0.566176 AGAGGATCCGGTTCCCCATA 59.434 55.000 25.10 0.00 36.35 2.74
9364 10378 0.566176 TAGAGGATCCGGTTCCCCAT 59.434 55.000 25.10 14.92 36.35 4.00
9365 10379 0.340558 TTAGAGGATCCGGTTCCCCA 59.659 55.000 25.10 10.04 36.35 4.96
9366 10380 0.757512 GTTAGAGGATCCGGTTCCCC 59.242 60.000 25.10 15.83 36.35 4.81
9367 10381 1.492764 TGTTAGAGGATCCGGTTCCC 58.507 55.000 25.10 17.15 36.35 3.97
9368 10382 4.950205 TTATGTTAGAGGATCCGGTTCC 57.050 45.455 22.05 22.05 33.66 3.62
9369 10383 6.158023 TCTTTATGTTAGAGGATCCGGTTC 57.842 41.667 5.98 1.67 33.66 3.62
9370 10384 6.408206 CCTTCTTTATGTTAGAGGATCCGGTT 60.408 42.308 5.98 0.00 33.66 4.44
9371 10385 5.070580 CCTTCTTTATGTTAGAGGATCCGGT 59.929 44.000 5.98 0.00 33.66 5.28
9372 10386 5.511545 CCCTTCTTTATGTTAGAGGATCCGG 60.512 48.000 5.98 0.00 33.66 5.14
9373 10387 5.304614 TCCCTTCTTTATGTTAGAGGATCCG 59.695 44.000 5.98 0.00 33.66 4.18
9374 10388 6.749036 TCCCTTCTTTATGTTAGAGGATCC 57.251 41.667 2.48 2.48 33.66 3.36
9375 10389 7.740805 ACATCCCTTCTTTATGTTAGAGGATC 58.259 38.462 0.00 0.00 29.14 3.36
9376 10390 7.348274 TGACATCCCTTCTTTATGTTAGAGGAT 59.652 37.037 0.00 0.00 34.09 3.24
9377 10391 6.672218 TGACATCCCTTCTTTATGTTAGAGGA 59.328 38.462 0.00 0.00 34.09 3.71
9378 10392 6.889198 TGACATCCCTTCTTTATGTTAGAGG 58.111 40.000 0.00 0.00 34.09 3.69
9379 10393 7.443575 CCATGACATCCCTTCTTTATGTTAGAG 59.556 40.741 0.00 0.00 34.09 2.43
9380 10394 7.092444 ACCATGACATCCCTTCTTTATGTTAGA 60.092 37.037 0.00 0.00 34.09 2.10
9381 10395 7.056635 ACCATGACATCCCTTCTTTATGTTAG 58.943 38.462 0.00 0.00 34.09 2.34
9382 10396 6.969043 ACCATGACATCCCTTCTTTATGTTA 58.031 36.000 0.00 0.00 34.09 2.41
9383 10397 5.831103 ACCATGACATCCCTTCTTTATGTT 58.169 37.500 0.00 0.00 34.09 2.71
9384 10398 5.456921 ACCATGACATCCCTTCTTTATGT 57.543 39.130 0.00 0.00 36.57 2.29
9385 10399 6.595682 AGTACCATGACATCCCTTCTTTATG 58.404 40.000 0.00 0.00 0.00 1.90
9386 10400 6.831664 AGTACCATGACATCCCTTCTTTAT 57.168 37.500 0.00 0.00 0.00 1.40
9387 10401 6.670464 TGTAGTACCATGACATCCCTTCTTTA 59.330 38.462 0.00 0.00 0.00 1.85
9388 10402 5.487488 TGTAGTACCATGACATCCCTTCTTT 59.513 40.000 0.00 0.00 0.00 2.52
9389 10403 5.030147 TGTAGTACCATGACATCCCTTCTT 58.970 41.667 0.00 0.00 0.00 2.52
9390 10404 4.620723 TGTAGTACCATGACATCCCTTCT 58.379 43.478 0.00 0.00 0.00 2.85
9391 10405 4.406003 ACTGTAGTACCATGACATCCCTTC 59.594 45.833 0.00 0.00 0.00 3.46
9392 10406 4.162320 CACTGTAGTACCATGACATCCCTT 59.838 45.833 0.00 0.00 0.00 3.95
9393 10407 3.706594 CACTGTAGTACCATGACATCCCT 59.293 47.826 0.00 0.00 0.00 4.20
9394 10408 3.741388 GCACTGTAGTACCATGACATCCC 60.741 52.174 0.00 0.00 0.00 3.85
9395 10409 3.133003 AGCACTGTAGTACCATGACATCC 59.867 47.826 0.00 0.00 0.00 3.51
9396 10410 4.392921 AGCACTGTAGTACCATGACATC 57.607 45.455 0.00 0.00 0.00 3.06
9397 10411 4.956700 ACTAGCACTGTAGTACCATGACAT 59.043 41.667 0.00 0.00 31.14 3.06
9398 10412 4.341487 ACTAGCACTGTAGTACCATGACA 58.659 43.478 0.00 0.00 31.14 3.58
9399 10413 4.641094 AGACTAGCACTGTAGTACCATGAC 59.359 45.833 0.00 0.00 33.18 3.06
9400 10414 4.640647 CAGACTAGCACTGTAGTACCATGA 59.359 45.833 0.00 0.00 33.18 3.07
9401 10415 4.399618 ACAGACTAGCACTGTAGTACCATG 59.600 45.833 17.71 0.00 45.10 3.66
9402 10416 4.601084 ACAGACTAGCACTGTAGTACCAT 58.399 43.478 17.71 0.00 45.10 3.55
9403 10417 4.030314 ACAGACTAGCACTGTAGTACCA 57.970 45.455 17.71 0.00 45.10 3.25
9404 10418 6.506500 TTAACAGACTAGCACTGTAGTACC 57.493 41.667 18.94 0.00 46.01 3.34
9405 10419 8.344098 CCTATTAACAGACTAGCACTGTAGTAC 58.656 40.741 18.94 0.00 46.01 2.73
9406 10420 8.051535 ACCTATTAACAGACTAGCACTGTAGTA 58.948 37.037 18.94 9.54 46.01 1.82
9407 10421 6.890814 ACCTATTAACAGACTAGCACTGTAGT 59.109 38.462 18.94 10.30 46.01 2.73
9408 10422 7.336161 ACCTATTAACAGACTAGCACTGTAG 57.664 40.000 18.94 13.74 46.01 2.74
9409 10423 7.177921 ACAACCTATTAACAGACTAGCACTGTA 59.822 37.037 18.94 8.80 46.01 2.74
9411 10425 6.398918 ACAACCTATTAACAGACTAGCACTG 58.601 40.000 13.65 13.65 40.68 3.66
9412 10426 6.607004 ACAACCTATTAACAGACTAGCACT 57.393 37.500 0.00 0.00 0.00 4.40
9413 10427 7.668525 AAACAACCTATTAACAGACTAGCAC 57.331 36.000 0.00 0.00 0.00 4.40
9414 10428 9.953565 ATTAAACAACCTATTAACAGACTAGCA 57.046 29.630 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.