Multiple sequence alignment - TraesCS2A01G238400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G238400 chr2A 100.000 8449 0 0 1 8449 321157866 321149418 0.000000e+00 15603.0
1 TraesCS2A01G238400 chr2A 95.434 219 10 0 8231 8449 354520894 354520676 4.850000e-92 350.0
2 TraesCS2A01G238400 chr2A 85.333 75 7 3 311 384 764145482 764145553 3.270000e-09 75.0
3 TraesCS2A01G238400 chr2A 100.000 34 0 0 342 375 668239032 668239065 7.080000e-06 63.9
4 TraesCS2A01G238400 chr2D 98.119 3031 49 5 2333 5355 234149735 234146705 0.000000e+00 5275.0
5 TraesCS2A01G238400 chr2D 93.457 1666 42 14 564 2209 234151352 234149734 0.000000e+00 2410.0
6 TraesCS2A01G238400 chr2D 96.003 1451 34 8 6791 8234 234145370 234143937 0.000000e+00 2337.0
7 TraesCS2A01G238400 chr2D 99.053 1056 9 1 5686 6741 234146709 234145655 0.000000e+00 1893.0
8 TraesCS2A01G238400 chr2D 97.590 332 6 1 5355 5686 317868066 317867737 1.230000e-157 568.0
9 TraesCS2A01G238400 chr2D 97.281 331 9 0 5355 5685 317866159 317865829 5.730000e-156 562.0
10 TraesCS2A01G238400 chr2D 96.131 336 9 2 5355 5686 441769635 441769300 5.770000e-151 545.0
11 TraesCS2A01G238400 chr2D 95.434 219 10 0 8230 8448 289151455 289151673 4.850000e-92 350.0
12 TraesCS2A01G238400 chr2D 97.037 135 2 2 2205 2337 450745505 450745639 8.530000e-55 226.0
13 TraesCS2A01G238400 chr2D 92.593 81 5 1 154 233 234152605 234152525 1.930000e-21 115.0
14 TraesCS2A01G238400 chr2D 87.013 77 7 3 298 374 125437639 125437712 5.430000e-12 84.2
15 TraesCS2A01G238400 chr2D 84.524 84 7 3 300 381 2738062 2737983 2.530000e-10 78.7
16 TraesCS2A01G238400 chr2D 95.238 42 2 0 670 711 579827090 579827049 5.470000e-07 67.6
17 TraesCS2A01G238400 chr2D 91.837 49 3 1 670 717 591303902 591303950 5.470000e-07 67.6
18 TraesCS2A01G238400 chr2D 95.238 42 1 1 670 711 505773190 505773230 1.970000e-06 65.8
19 TraesCS2A01G238400 chr2B 97.100 3034 66 13 2333 5355 273057614 273054592 0.000000e+00 5096.0
20 TraesCS2A01G238400 chr2B 96.992 1463 38 3 752 2209 273059074 273057613 0.000000e+00 2453.0
21 TraesCS2A01G238400 chr2B 94.787 1266 46 9 6791 8041 273052942 273051682 0.000000e+00 1954.0
22 TraesCS2A01G238400 chr2B 98.581 1057 13 2 5686 6741 273054596 273053541 0.000000e+00 1868.0
23 TraesCS2A01G238400 chr2B 88.811 143 15 1 8086 8227 639344510 639344368 3.130000e-39 174.0
24 TraesCS2A01G238400 chr5B 97.289 332 9 0 5355 5686 330742289 330741958 1.590000e-156 564.0
25 TraesCS2A01G238400 chr5B 97.281 331 7 1 5355 5685 330740361 330740033 2.060000e-155 560.0
26 TraesCS2A01G238400 chr5B 99.213 127 1 0 2208 2334 96879069 96878943 6.600000e-56 230.0
27 TraesCS2A01G238400 chr5B 89.610 77 7 1 299 374 12295552 12295628 6.980000e-16 97.1
28 TraesCS2A01G238400 chr5B 87.692 65 6 2 654 717 551407158 551407095 3.270000e-09 75.0
29 TraesCS2A01G238400 chr5B 87.097 62 6 2 664 724 531879611 531879551 1.520000e-07 69.4
30 TraesCS2A01G238400 chr5B 97.297 37 1 0 338 374 301201770 301201806 7.080000e-06 63.9
31 TraesCS2A01G238400 chr4D 96.677 331 9 1 5358 5686 274464547 274464217 4.460000e-152 549.0
32 TraesCS2A01G238400 chr4D 96.923 130 3 1 2205 2334 344231837 344231965 5.140000e-52 217.0
33 TraesCS2A01G238400 chr4D 93.617 141 6 3 2194 2334 144894797 144894934 3.090000e-49 207.0
34 TraesCS2A01G238400 chr4D 90.278 72 6 1 6799 6869 179011011 179010940 9.030000e-15 93.5
35 TraesCS2A01G238400 chr4D 93.182 44 3 0 297 340 1640043 1640000 1.970000e-06 65.8
36 TraesCS2A01G238400 chr4D 93.023 43 3 0 669 711 112074037 112073995 7.080000e-06 63.9
37 TraesCS2A01G238400 chr4D 94.595 37 2 0 675 711 484462759 484462723 3.290000e-04 58.4
38 TraesCS2A01G238400 chr4D 88.889 45 4 1 675 718 473830130 473830174 4.000000e-03 54.7
39 TraesCS2A01G238400 chr1D 96.119 335 9 1 5355 5685 258348071 258347737 2.070000e-150 544.0
40 TraesCS2A01G238400 chr1D 95.833 336 10 3 5355 5686 98828182 98828517 2.680000e-149 540.0
41 TraesCS2A01G238400 chr1D 95.652 138 5 1 2208 2345 7179562 7179698 3.970000e-53 220.0
42 TraesCS2A01G238400 chr1D 96.923 130 4 0 2208 2337 178459638 178459509 1.430000e-52 219.0
43 TraesCS2A01G238400 chr1D 96.899 129 4 0 2206 2334 368493683 368493811 5.140000e-52 217.0
44 TraesCS2A01G238400 chr1D 96.850 127 4 0 2208 2334 116238507 116238381 6.640000e-51 213.0
45 TraesCS2A01G238400 chr1D 94.286 140 7 1 2204 2342 438323374 438323235 6.640000e-51 213.0
46 TraesCS2A01G238400 chr1D 96.183 131 4 1 2204 2334 453792949 453793078 6.640000e-51 213.0
47 TraesCS2A01G238400 chr1D 94.203 138 7 1 2208 2345 4309171 4309035 8.590000e-50 209.0
48 TraesCS2A01G238400 chr1D 90.741 54 4 1 288 340 481696675 481696728 4.230000e-08 71.3
49 TraesCS2A01G238400 chr1D 94.872 39 2 0 664 702 25918117 25918155 2.550000e-05 62.1
50 TraesCS2A01G238400 chr1D 100.000 33 0 0 342 374 64145990 64145958 2.550000e-05 62.1
51 TraesCS2A01G238400 chr6D 95.821 335 12 1 5354 5686 211665828 211666162 2.680000e-149 540.0
52 TraesCS2A01G238400 chr6D 97.656 128 3 0 2208 2335 123774012 123774139 3.970000e-53 220.0
53 TraesCS2A01G238400 chr6D 97.638 127 3 0 2208 2334 35022452 35022326 1.430000e-52 219.0
54 TraesCS2A01G238400 chr6D 88.732 142 16 0 8086 8227 20798730 20798871 3.130000e-39 174.0
55 TraesCS2A01G238400 chr6D 89.583 48 5 0 664 711 472581294 472581341 2.550000e-05 62.1
56 TraesCS2A01G238400 chr6A 96.347 219 8 0 8231 8449 155067670 155067888 2.240000e-95 361.0
57 TraesCS2A01G238400 chr6A 95.890 219 9 0 8231 8449 297706738 297706520 1.040000e-93 355.0
58 TraesCS2A01G238400 chr6A 91.228 57 4 1 664 719 442088110 442088166 9.090000e-10 76.8
59 TraesCS2A01G238400 chr6A 92.000 50 4 0 292 341 506233761 506233712 4.230000e-08 71.3
60 TraesCS2A01G238400 chr6A 93.617 47 2 1 673 718 261134203 261134157 1.520000e-07 69.4
61 TraesCS2A01G238400 chr6A 96.970 33 1 0 342 374 337133226 337133258 1.000000e-03 56.5
62 TraesCS2A01G238400 chr7D 95.455 220 10 0 8230 8449 331943655 331943874 1.350000e-92 351.0
63 TraesCS2A01G238400 chr7D 95.455 220 10 0 8230 8449 331947275 331947494 1.350000e-92 351.0
64 TraesCS2A01G238400 chr7D 97.778 135 3 0 2208 2342 617211602 617211468 5.100000e-57 233.0
65 TraesCS2A01G238400 chr7D 97.015 134 3 1 2208 2341 194601788 194601656 3.070000e-54 224.0
66 TraesCS2A01G238400 chr7D 91.139 79 5 2 4140 4216 261813329 261813251 1.160000e-18 106.0
67 TraesCS2A01G238400 chr7D 95.238 42 2 0 670 711 415949483 415949524 5.470000e-07 67.6
68 TraesCS2A01G238400 chr7D 97.297 37 1 0 674 710 32111350 32111314 7.080000e-06 63.9
69 TraesCS2A01G238400 chr7D 85.714 63 5 4 673 733 135974722 135974662 7.080000e-06 63.9
70 TraesCS2A01G238400 chr7D 94.872 39 1 1 673 711 530348922 530348885 9.160000e-05 60.2
71 TraesCS2A01G238400 chr7D 97.059 34 1 0 341 374 66706949 66706982 3.290000e-04 58.4
72 TraesCS2A01G238400 chr7D 100.000 30 0 0 311 340 125907240 125907211 1.000000e-03 56.5
73 TraesCS2A01G238400 chr7A 95.455 220 10 0 8230 8449 358985656 358985437 1.350000e-92 351.0
74 TraesCS2A01G238400 chr7A 94.495 109 6 0 1 109 106767813 106767921 1.460000e-37 169.0
75 TraesCS2A01G238400 chr7A 95.238 42 2 0 670 711 611555809 611555768 5.470000e-07 67.6
76 TraesCS2A01G238400 chr7A 97.297 37 1 0 342 378 127671192 127671228 7.080000e-06 63.9
77 TraesCS2A01G238400 chr7A 90.000 50 4 1 664 712 679379948 679379997 7.080000e-06 63.9
78 TraesCS2A01G238400 chr1A 95.455 220 10 0 8230 8449 220353010 220352791 1.350000e-92 351.0
79 TraesCS2A01G238400 chr1A 89.677 155 12 3 8082 8234 241347416 241347264 2.410000e-45 195.0
80 TraesCS2A01G238400 chr1A 90.000 50 4 1 670 718 583322157 583322206 7.080000e-06 63.9
81 TraesCS2A01G238400 chr4B 95.413 218 10 0 8230 8447 306042170 306042387 1.750000e-91 348.0
82 TraesCS2A01G238400 chr4B 97.744 133 3 0 2202 2334 576982574 576982442 6.600000e-56 230.0
83 TraesCS2A01G238400 chr4B 96.992 133 3 1 2204 2335 580801721 580801853 1.100000e-53 222.0
84 TraesCS2A01G238400 chr4B 93.023 43 3 0 669 711 172735541 172735499 7.080000e-06 63.9
85 TraesCS2A01G238400 chr7B 96.324 136 5 0 2202 2337 512769773 512769638 3.070000e-54 224.0
86 TraesCS2A01G238400 chr7B 81.609 87 6 3 299 375 75606439 75606353 7.080000e-06 63.9
87 TraesCS2A01G238400 chr7B 89.583 48 5 0 664 711 376359595 376359642 2.550000e-05 62.1
88 TraesCS2A01G238400 chr5D 98.425 127 2 0 2208 2334 455608055 455607929 3.070000e-54 224.0
89 TraesCS2A01G238400 chr5D 96.923 130 4 0 2205 2334 231736909 231736780 1.430000e-52 219.0
90 TraesCS2A01G238400 chr5D 100.000 33 0 0 342 374 24356366 24356334 2.550000e-05 62.1
91 TraesCS2A01G238400 chr5D 100.000 28 0 0 349 376 206863086 206863059 1.500000e-02 52.8
92 TraesCS2A01G238400 chr3D 98.425 127 2 0 2208 2334 84562610 84562736 3.070000e-54 224.0
93 TraesCS2A01G238400 chr3D 95.070 142 4 3 2208 2349 166094721 166094859 3.970000e-53 220.0
94 TraesCS2A01G238400 chr3D 90.909 143 12 1 8086 8227 81380837 81380695 3.110000e-44 191.0
95 TraesCS2A01G238400 chr3D 95.556 45 2 0 296 340 6176874 6176830 1.180000e-08 73.1
96 TraesCS2A01G238400 chr3D 94.737 38 2 0 674 711 607238817 607238780 9.160000e-05 60.2
97 TraesCS2A01G238400 chr3D 88.000 50 5 1 669 717 388518898 388518947 3.290000e-04 58.4
98 TraesCS2A01G238400 chr3B 97.710 131 2 1 2208 2337 760588984 760589114 3.070000e-54 224.0
99 TraesCS2A01G238400 chr3B 76.873 307 59 12 1398 1698 790789721 790789421 6.790000e-36 163.0
100 TraesCS2A01G238400 chr1B 98.425 127 2 0 2208 2334 277456425 277456299 3.070000e-54 224.0
101 TraesCS2A01G238400 chr1B 95.683 139 5 1 2204 2342 543038906 543038769 1.100000e-53 222.0
102 TraesCS2A01G238400 chr1B 97.638 127 3 0 2208 2334 102627727 102627853 1.430000e-52 219.0
103 TraesCS2A01G238400 chr1B 95.588 136 6 0 2208 2343 374020783 374020918 1.430000e-52 219.0
104 TraesCS2A01G238400 chr1B 94.326 141 7 1 2203 2342 430146371 430146231 1.850000e-51 215.0
105 TraesCS2A01G238400 chr1B 90.345 145 11 3 8086 8228 521657222 521657079 4.030000e-43 187.0
106 TraesCS2A01G238400 chr1B 89.091 110 10 2 1 109 624484722 624484614 1.480000e-27 135.0
107 TraesCS2A01G238400 chr1B 95.122 41 2 0 300 340 196147122 196147162 1.970000e-06 65.8
108 TraesCS2A01G238400 chr1B 91.111 45 2 2 338 381 58582403 58582360 9.160000e-05 60.2
109 TraesCS2A01G238400 chr1B 92.683 41 2 1 673 713 147340310 147340271 3.290000e-04 58.4
110 TraesCS2A01G238400 chr1B 87.755 49 5 1 654 702 659977976 659978023 1.000000e-03 56.5
111 TraesCS2A01G238400 chrUn 96.947 131 4 0 2204 2334 332269461 332269331 3.970000e-53 220.0
112 TraesCS2A01G238400 chrUn 95.000 140 5 2 2204 2342 52994434 52994572 1.430000e-52 219.0
113 TraesCS2A01G238400 chrUn 96.269 134 4 1 2208 2341 322720410 322720542 1.430000e-52 219.0
114 TraesCS2A01G238400 chrUn 96.850 127 4 0 2208 2334 103517773 103517647 6.640000e-51 213.0
115 TraesCS2A01G238400 chrUn 96.063 127 5 0 2208 2334 16475836 16475962 3.090000e-49 207.0
116 TraesCS2A01G238400 chrUn 95.385 130 6 0 2205 2334 17025256 17025385 3.090000e-49 207.0
117 TraesCS2A01G238400 chrUn 95.385 130 6 0 2205 2334 17027489 17027618 3.090000e-49 207.0
118 TraesCS2A01G238400 chrUn 96.063 127 5 0 2208 2334 93156457 93156331 3.090000e-49 207.0
119 TraesCS2A01G238400 chrUn 96.063 127 5 0 2208 2334 263456365 263456491 3.090000e-49 207.0
120 TraesCS2A01G238400 chrUn 96.063 127 5 0 2208 2334 292131187 292131061 3.090000e-49 207.0
121 TraesCS2A01G238400 chrUn 96.063 127 5 0 2208 2334 302852257 302852131 3.090000e-49 207.0
122 TraesCS2A01G238400 chrUn 95.349 43 1 1 674 715 350454273 350454315 5.470000e-07 67.6
123 TraesCS2A01G238400 chrUn 88.000 50 5 1 669 717 40528222 40528173 3.290000e-04 58.4
124 TraesCS2A01G238400 chrUn 94.595 37 2 0 675 711 248124589 248124553 3.290000e-04 58.4
125 TraesCS2A01G238400 chrUn 94.595 37 2 0 675 711 346478600 346478636 3.290000e-04 58.4
126 TraesCS2A01G238400 chrUn 94.444 36 0 1 342 375 24217 24182 4.000000e-03 54.7
127 TraesCS2A01G238400 chr5A 88.816 152 11 5 8086 8234 27568030 27568178 1.870000e-41 182.0
128 TraesCS2A01G238400 chr5A 88.079 151 16 2 8086 8234 267118175 267118325 2.420000e-40 178.0
129 TraesCS2A01G238400 chr5A 88.079 151 14 2 8085 8234 267115837 267115984 8.720000e-40 176.0
130 TraesCS2A01G238400 chr6B 95.238 42 2 0 299 340 7821339 7821380 5.470000e-07 67.6
131 TraesCS2A01G238400 chr3A 95.238 42 2 0 670 711 644917682 644917641 5.470000e-07 67.6
132 TraesCS2A01G238400 chr3A 86.667 60 5 2 664 720 647618227 647618286 7.080000e-06 63.9
133 TraesCS2A01G238400 chr3A 85.714 63 6 1 649 711 649028623 649028564 7.080000e-06 63.9
134 TraesCS2A01G238400 chr4A 86.667 60 5 2 664 720 559503584 559503643 7.080000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G238400 chr2A 321149418 321157866 8448 True 15603.00 15603 100.0000 1 8449 1 chr2A.!!$R1 8448
1 TraesCS2A01G238400 chr2D 234143937 234152605 8668 True 2406.00 5275 95.8450 154 8234 5 chr2D.!!$R4 8080
2 TraesCS2A01G238400 chr2D 317865829 317868066 2237 True 565.00 568 97.4355 5355 5686 2 chr2D.!!$R5 331
3 TraesCS2A01G238400 chr2B 273051682 273059074 7392 True 2842.75 5096 96.8650 752 8041 4 chr2B.!!$R2 7289
4 TraesCS2A01G238400 chr5B 330740033 330742289 2256 True 562.00 564 97.2850 5355 5686 2 chr5B.!!$R4 331
5 TraesCS2A01G238400 chr7D 331943655 331947494 3839 False 351.00 351 95.4550 8230 8449 2 chr7D.!!$F3 219
6 TraesCS2A01G238400 chrUn 17025256 17027618 2362 False 207.00 207 95.3850 2205 2334 2 chrUn.!!$F7 129

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 1283 0.096454 GCGTCACTGTTAAATCCCGC 59.904 55.000 0.00 0.00 0.00 6.13 F
536 1351 0.310854 CACTTTCGGCACAGGTTTCC 59.689 55.000 0.00 0.00 0.00 3.13 F
963 1822 2.363018 TCCCTCACTGCTCCTCGG 60.363 66.667 0.00 0.00 0.00 4.63 F
2703 3571 2.000429 GCCTTCAGCAATGCGAAATT 58.000 45.000 11.98 0.00 42.97 1.82 F
2908 3777 2.693591 CCGCCTCATGAAGAAGGTACTA 59.306 50.000 0.00 0.00 38.49 1.82 F
4225 5098 3.412386 ACAGAGGGAGTACAATTTGTGC 58.588 45.455 12.30 10.76 32.95 4.57 F
4445 5318 1.021202 CTTGTCAACTTTGCCCGTCA 58.979 50.000 0.00 0.00 0.00 4.35 F
5655 6593 1.136828 ACTGGGCCACAACTAACTGA 58.863 50.000 0.00 0.00 0.00 3.41 F
6741 10055 7.609532 GCAACTTATCTCTATTTCATAGCCCAT 59.390 37.037 0.00 0.00 32.85 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 2881 1.532604 TACAGTGCTGTGGGGACTCG 61.533 60.000 14.44 0.00 44.82 4.18 R
2297 3164 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57 R
2830 3699 1.977854 CCCATCTCGATATGGTTCCCA 59.022 52.381 23.76 0.00 44.29 4.37 R
4400 5273 2.159338 CCAGTGCTTATTTTGCGCTCAT 60.159 45.455 9.73 0.00 46.70 2.90 R
4445 5318 6.840780 AAGCAATATCCAGCAAACTAAAGT 57.159 33.333 0.00 0.00 0.00 2.66 R
5353 6289 0.179702 GGGATCCGGTTCCTACCAAC 59.820 60.000 26.93 9.09 45.31 3.77 R
5840 9050 1.136695 CAAGCTGCACCCAACAAAAGA 59.863 47.619 1.02 0.00 0.00 2.52 R
6813 10678 0.467844 ACTGTGCAGGCCAATCAACA 60.468 50.000 5.01 0.69 0.00 3.33 R
8240 12199 0.474184 ATGGGGATGAACGTGGGATC 59.526 55.000 0.00 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.354678 CAAAGTGAACCCCCTGCG 58.645 61.111 0.00 0.00 0.00 5.18
18 19 2.597510 AAAGTGAACCCCCTGCGC 60.598 61.111 0.00 0.00 0.00 6.09
19 20 3.429372 AAAGTGAACCCCCTGCGCA 62.429 57.895 10.98 10.98 0.00 6.09
20 21 2.920076 AAAGTGAACCCCCTGCGCAA 62.920 55.000 13.05 0.00 0.00 4.85
21 22 3.365265 GTGAACCCCCTGCGCAAG 61.365 66.667 13.05 4.91 43.44 4.01
22 23 3.884774 TGAACCCCCTGCGCAAGT 61.885 61.111 13.05 3.63 41.68 3.16
23 24 2.349755 GAACCCCCTGCGCAAGTA 59.650 61.111 13.05 0.00 41.68 2.24
24 25 2.033602 AACCCCCTGCGCAAGTAC 59.966 61.111 13.05 0.00 41.68 2.73
25 26 2.741486 GAACCCCCTGCGCAAGTACA 62.741 60.000 13.05 0.00 41.68 2.90
26 27 2.137177 AACCCCCTGCGCAAGTACAT 62.137 55.000 13.05 0.00 41.68 2.29
27 28 1.268992 ACCCCCTGCGCAAGTACATA 61.269 55.000 13.05 0.00 41.68 2.29
28 29 0.532862 CCCCCTGCGCAAGTACATAG 60.533 60.000 13.05 0.00 41.68 2.23
29 30 0.464036 CCCCTGCGCAAGTACATAGA 59.536 55.000 13.05 0.00 41.68 1.98
30 31 1.571919 CCCTGCGCAAGTACATAGAC 58.428 55.000 13.05 0.00 41.68 2.59
31 32 1.137086 CCCTGCGCAAGTACATAGACT 59.863 52.381 13.05 0.00 41.68 3.24
32 33 2.196749 CCTGCGCAAGTACATAGACTG 58.803 52.381 13.05 0.00 41.68 3.51
33 34 2.417379 CCTGCGCAAGTACATAGACTGT 60.417 50.000 13.05 0.00 39.00 3.55
34 35 3.181490 CCTGCGCAAGTACATAGACTGTA 60.181 47.826 13.05 0.00 37.24 2.74
35 36 4.499865 CCTGCGCAAGTACATAGACTGTAT 60.500 45.833 13.05 0.00 42.21 2.29
36 37 5.006153 TGCGCAAGTACATAGACTGTATT 57.994 39.130 8.16 0.00 42.21 1.89
37 38 5.416083 TGCGCAAGTACATAGACTGTATTT 58.584 37.500 8.16 0.00 42.21 1.40
38 39 5.518847 TGCGCAAGTACATAGACTGTATTTC 59.481 40.000 8.16 0.00 42.21 2.17
39 40 5.331607 GCGCAAGTACATAGACTGTATTTCG 60.332 44.000 0.30 0.00 42.21 3.46
40 41 5.173312 CGCAAGTACATAGACTGTATTTCGG 59.827 44.000 0.00 0.00 42.21 4.30
41 42 5.462398 GCAAGTACATAGACTGTATTTCGGG 59.538 44.000 0.00 0.00 42.21 5.14
42 43 6.570692 CAAGTACATAGACTGTATTTCGGGT 58.429 40.000 0.00 0.00 42.21 5.28
43 44 7.682741 GCAAGTACATAGACTGTATTTCGGGTA 60.683 40.741 0.00 0.00 42.21 3.69
44 45 8.358148 CAAGTACATAGACTGTATTTCGGGTAT 58.642 37.037 0.00 0.00 42.21 2.73
45 46 8.474710 AGTACATAGACTGTATTTCGGGTATT 57.525 34.615 0.00 0.00 42.21 1.89
46 47 8.921205 AGTACATAGACTGTATTTCGGGTATTT 58.079 33.333 0.00 0.00 42.21 1.40
47 48 9.189723 GTACATAGACTGTATTTCGGGTATTTC 57.810 37.037 0.00 0.00 42.21 2.17
48 49 6.921857 ACATAGACTGTATTTCGGGTATTTCG 59.078 38.462 0.00 0.00 35.91 3.46
49 50 5.587388 AGACTGTATTTCGGGTATTTCGA 57.413 39.130 0.00 0.00 34.62 3.71
50 51 5.969423 AGACTGTATTTCGGGTATTTCGAA 58.031 37.500 0.00 0.00 43.61 3.71
51 52 6.040878 AGACTGTATTTCGGGTATTTCGAAG 58.959 40.000 0.00 0.00 45.44 3.79
52 53 5.727434 ACTGTATTTCGGGTATTTCGAAGT 58.273 37.500 0.00 0.00 45.44 3.01
53 54 6.866480 ACTGTATTTCGGGTATTTCGAAGTA 58.134 36.000 0.00 0.00 45.44 2.24
54 55 6.976925 ACTGTATTTCGGGTATTTCGAAGTAG 59.023 38.462 0.00 0.00 45.44 2.57
55 56 6.866480 TGTATTTCGGGTATTTCGAAGTAGT 58.134 36.000 0.00 0.00 45.44 2.73
56 57 6.753279 TGTATTTCGGGTATTTCGAAGTAGTG 59.247 38.462 0.00 0.00 45.44 2.74
57 58 3.788333 TCGGGTATTTCGAAGTAGTGG 57.212 47.619 0.00 0.00 33.42 4.00
58 59 3.091545 TCGGGTATTTCGAAGTAGTGGT 58.908 45.455 0.00 0.00 33.42 4.16
59 60 4.269183 TCGGGTATTTCGAAGTAGTGGTA 58.731 43.478 0.00 0.00 33.42 3.25
60 61 4.096382 TCGGGTATTTCGAAGTAGTGGTAC 59.904 45.833 0.00 0.00 33.42 3.34
61 62 4.096984 CGGGTATTTCGAAGTAGTGGTACT 59.903 45.833 0.00 0.00 41.61 2.73
72 73 5.388408 AGTAGTGGTACTTAAGTGTCAGC 57.612 43.478 18.56 8.61 35.88 4.26
73 74 3.679824 AGTGGTACTTAAGTGTCAGCC 57.320 47.619 18.56 11.89 0.00 4.85
74 75 2.029290 AGTGGTACTTAAGTGTCAGCCG 60.029 50.000 18.56 0.00 0.00 5.52
75 76 2.029649 GTGGTACTTAAGTGTCAGCCGA 60.030 50.000 18.56 0.00 0.00 5.54
76 77 2.029649 TGGTACTTAAGTGTCAGCCGAC 60.030 50.000 18.56 5.43 42.93 4.79
77 78 2.230750 GGTACTTAAGTGTCAGCCGACT 59.769 50.000 18.56 0.00 43.06 4.18
78 79 2.726832 ACTTAAGTGTCAGCCGACTC 57.273 50.000 7.48 0.00 43.06 3.36
79 80 1.961394 ACTTAAGTGTCAGCCGACTCA 59.039 47.619 7.48 0.00 43.06 3.41
80 81 2.364324 ACTTAAGTGTCAGCCGACTCAA 59.636 45.455 7.48 0.00 43.06 3.02
81 82 2.724977 TAAGTGTCAGCCGACTCAAG 57.275 50.000 1.05 0.00 43.06 3.02
82 83 0.753262 AAGTGTCAGCCGACTCAAGT 59.247 50.000 1.05 0.00 43.06 3.16
83 84 0.753262 AGTGTCAGCCGACTCAAGTT 59.247 50.000 1.05 0.00 43.06 2.66
84 85 1.139058 AGTGTCAGCCGACTCAAGTTT 59.861 47.619 1.05 0.00 43.06 2.66
85 86 1.940613 GTGTCAGCCGACTCAAGTTTT 59.059 47.619 1.05 0.00 43.06 2.43
86 87 1.939934 TGTCAGCCGACTCAAGTTTTG 59.060 47.619 1.05 0.00 43.06 2.44
87 88 1.940613 GTCAGCCGACTCAAGTTTTGT 59.059 47.619 0.00 0.00 39.22 2.83
88 89 1.939934 TCAGCCGACTCAAGTTTTGTG 59.060 47.619 0.00 0.00 0.00 3.33
89 90 1.939934 CAGCCGACTCAAGTTTTGTGA 59.060 47.619 0.00 0.00 0.00 3.58
90 91 1.940613 AGCCGACTCAAGTTTTGTGAC 59.059 47.619 0.00 0.00 0.00 3.67
91 92 1.002792 GCCGACTCAAGTTTTGTGACC 60.003 52.381 0.00 0.00 0.00 4.02
92 93 2.561569 CCGACTCAAGTTTTGTGACCT 58.438 47.619 0.00 0.00 0.00 3.85
93 94 3.724374 CCGACTCAAGTTTTGTGACCTA 58.276 45.455 0.00 0.00 0.00 3.08
94 95 4.315803 CCGACTCAAGTTTTGTGACCTAT 58.684 43.478 0.00 0.00 0.00 2.57
95 96 5.475719 CCGACTCAAGTTTTGTGACCTATA 58.524 41.667 0.00 0.00 0.00 1.31
96 97 5.929992 CCGACTCAAGTTTTGTGACCTATAA 59.070 40.000 0.00 0.00 0.00 0.98
97 98 6.594159 CCGACTCAAGTTTTGTGACCTATAAT 59.406 38.462 0.00 0.00 0.00 1.28
98 99 7.413000 CCGACTCAAGTTTTGTGACCTATAATG 60.413 40.741 0.00 0.00 0.00 1.90
99 100 7.330946 CGACTCAAGTTTTGTGACCTATAATGA 59.669 37.037 0.00 0.00 0.00 2.57
100 101 8.918202 ACTCAAGTTTTGTGACCTATAATGAA 57.082 30.769 0.00 0.00 0.00 2.57
101 102 9.520515 ACTCAAGTTTTGTGACCTATAATGAAT 57.479 29.630 0.00 0.00 0.00 2.57
123 124 8.656849 TGAATTTTTCTCTAGTTAGAATGACGC 58.343 33.333 0.00 0.00 35.48 5.19
124 125 6.963049 TTTTTCTCTAGTTAGAATGACGCC 57.037 37.500 0.00 0.00 35.48 5.68
125 126 4.650754 TTCTCTAGTTAGAATGACGCCC 57.349 45.455 0.00 0.00 30.54 6.13
126 127 3.628008 TCTCTAGTTAGAATGACGCCCA 58.372 45.455 0.00 0.00 0.00 5.36
127 128 4.021229 TCTCTAGTTAGAATGACGCCCAA 58.979 43.478 0.00 0.00 0.00 4.12
128 129 4.113354 CTCTAGTTAGAATGACGCCCAAC 58.887 47.826 0.00 0.00 0.00 3.77
129 130 2.851263 AGTTAGAATGACGCCCAACA 57.149 45.000 0.00 0.00 0.00 3.33
130 131 2.423577 AGTTAGAATGACGCCCAACAC 58.576 47.619 0.00 0.00 0.00 3.32
131 132 2.038557 AGTTAGAATGACGCCCAACACT 59.961 45.455 0.00 0.00 0.00 3.55
132 133 3.259876 AGTTAGAATGACGCCCAACACTA 59.740 43.478 0.00 0.00 0.00 2.74
133 134 2.386661 AGAATGACGCCCAACACTAG 57.613 50.000 0.00 0.00 0.00 2.57
134 135 1.899814 AGAATGACGCCCAACACTAGA 59.100 47.619 0.00 0.00 0.00 2.43
135 136 2.501723 AGAATGACGCCCAACACTAGAT 59.498 45.455 0.00 0.00 0.00 1.98
136 137 3.055094 AGAATGACGCCCAACACTAGATT 60.055 43.478 0.00 0.00 0.00 2.40
137 138 2.851263 TGACGCCCAACACTAGATTT 57.149 45.000 0.00 0.00 0.00 2.17
138 139 2.422597 TGACGCCCAACACTAGATTTG 58.577 47.619 0.00 0.00 0.00 2.32
139 140 2.224426 TGACGCCCAACACTAGATTTGT 60.224 45.455 0.00 0.00 0.00 2.83
140 141 2.151202 ACGCCCAACACTAGATTTGTG 58.849 47.619 0.00 0.00 40.87 3.33
141 142 1.135689 CGCCCAACACTAGATTTGTGC 60.136 52.381 0.00 1.19 38.86 4.57
142 143 1.202348 GCCCAACACTAGATTTGTGCC 59.798 52.381 0.00 0.00 38.86 5.01
143 144 2.513753 CCCAACACTAGATTTGTGCCA 58.486 47.619 0.00 0.00 38.86 4.92
144 145 2.890311 CCCAACACTAGATTTGTGCCAA 59.110 45.455 0.00 0.00 38.86 4.52
145 146 3.320541 CCCAACACTAGATTTGTGCCAAA 59.679 43.478 0.00 3.33 38.86 3.28
146 147 4.021192 CCCAACACTAGATTTGTGCCAAAT 60.021 41.667 11.47 11.47 38.86 2.32
147 148 5.163513 CCAACACTAGATTTGTGCCAAATC 58.836 41.667 22.72 22.72 38.86 2.17
148 149 5.047802 CCAACACTAGATTTGTGCCAAATCT 60.048 40.000 29.58 29.58 45.76 2.40
149 150 5.633830 ACACTAGATTTGTGCCAAATCTG 57.366 39.130 31.92 26.25 44.22 2.90
150 151 5.316167 ACACTAGATTTGTGCCAAATCTGA 58.684 37.500 31.92 21.94 44.22 3.27
151 152 5.948162 ACACTAGATTTGTGCCAAATCTGAT 59.052 36.000 31.92 23.49 44.22 2.90
152 153 7.112122 ACACTAGATTTGTGCCAAATCTGATA 58.888 34.615 31.92 21.02 44.22 2.15
157 158 3.920231 TGTGCCAAATCTGATAGCTCT 57.080 42.857 0.00 0.00 0.00 4.09
159 160 3.198417 TGTGCCAAATCTGATAGCTCTCA 59.802 43.478 1.43 1.43 0.00 3.27
167 168 0.382158 TGATAGCTCTCAAGGCGACG 59.618 55.000 0.00 0.00 34.52 5.12
168 169 0.663688 GATAGCTCTCAAGGCGACGA 59.336 55.000 0.00 0.00 34.52 4.20
240 1015 3.090952 TGCATTAGTGTTTTGGTGCAC 57.909 42.857 8.80 8.80 37.63 4.57
271 1046 7.148407 GGTTCATACCAAATCGGATAGCTATTG 60.148 40.741 7.87 4.18 44.36 1.90
272 1047 6.406370 TCATACCAAATCGGATAGCTATTGG 58.594 40.000 16.54 16.54 42.29 3.16
303 1078 9.118236 GCTGTAAATGAATCAAAACAAGTACTC 57.882 33.333 0.00 0.00 0.00 2.59
308 1083 7.839680 ATGAATCAAAACAAGTACTCCCTTT 57.160 32.000 0.00 0.00 0.00 3.11
309 1084 8.934023 ATGAATCAAAACAAGTACTCCCTTTA 57.066 30.769 0.00 0.00 0.00 1.85
327 1102 9.396022 CTCCCTTTATAAAGAAATACAAGAGCA 57.604 33.333 23.95 0.00 38.28 4.26
347 1122 8.077836 AGAGCATTTAGATCACTAATAAACGC 57.922 34.615 0.00 0.00 38.23 4.84
349 1124 8.438676 AGCATTTAGATCACTAATAAACGCTT 57.561 30.769 0.00 0.00 38.23 4.68
370 1145 9.871238 ACGCTTTTATATTTCTTTACAGAGAGA 57.129 29.630 0.00 0.00 0.00 3.10
406 1221 0.101759 CAGCAGCAGCAACAAACTGT 59.898 50.000 3.17 0.00 45.49 3.55
421 1236 1.688772 ACTGTACGCTATGATCCCGT 58.311 50.000 0.00 0.00 38.84 5.28
423 1238 3.216800 ACTGTACGCTATGATCCCGTAA 58.783 45.455 6.60 0.26 38.90 3.18
444 1259 0.759346 ACTGCGAAGACTGAACCCTT 59.241 50.000 0.00 0.00 0.00 3.95
445 1260 1.141053 ACTGCGAAGACTGAACCCTTT 59.859 47.619 0.00 0.00 0.00 3.11
450 1265 2.737252 CGAAGACTGAACCCTTTAGTGC 59.263 50.000 0.00 0.00 0.00 4.40
468 1283 0.096454 GCGTCACTGTTAAATCCCGC 59.904 55.000 0.00 0.00 0.00 6.13
474 1289 4.096382 GTCACTGTTAAATCCCGCATCAAT 59.904 41.667 0.00 0.00 0.00 2.57
491 1306 8.559536 CCGCATCAATATTTAGTTTGACATAGT 58.440 33.333 0.00 0.00 34.87 2.12
505 1320 9.520515 AGTTTGACATAGTCATATCTTGGTTTT 57.479 29.630 0.12 0.00 42.40 2.43
509 1324 8.768397 TGACATAGTCATATCTTGGTTTTACCT 58.232 33.333 0.00 0.00 37.67 3.08
524 1339 5.049886 GGTTTTACCTAACCAGACACTTTCG 60.050 44.000 0.00 0.00 45.59 3.46
536 1351 0.310854 CACTTTCGGCACAGGTTTCC 59.689 55.000 0.00 0.00 0.00 3.13
562 1377 7.600375 CGACTACATGATATAATGAAGTTGGCT 59.400 37.037 7.09 0.00 0.00 4.75
583 1427 3.934579 CTGCTGCATTTTGGGTATTTTCC 59.065 43.478 1.31 0.00 0.00 3.13
600 1444 3.558608 TTCCCCATGGGTCAATTTCTT 57.441 42.857 29.33 0.00 44.74 2.52
609 1453 6.072175 CCATGGGTCAATTTCTTCTTTCGTAA 60.072 38.462 2.85 0.00 0.00 3.18
624 1468 7.841915 TCTTTCGTAACAAAGATATCATGCA 57.158 32.000 5.32 0.00 37.45 3.96
625 1469 8.262715 TCTTTCGTAACAAAGATATCATGCAA 57.737 30.769 5.32 0.00 37.45 4.08
626 1470 8.175069 TCTTTCGTAACAAAGATATCATGCAAC 58.825 33.333 5.32 5.02 37.45 4.17
646 1490 6.272698 CAACTGTTGCCACTTATTGTTTTC 57.727 37.500 7.70 0.00 0.00 2.29
647 1491 5.852282 ACTGTTGCCACTTATTGTTTTCT 57.148 34.783 0.00 0.00 0.00 2.52
648 1492 6.220726 ACTGTTGCCACTTATTGTTTTCTT 57.779 33.333 0.00 0.00 0.00 2.52
649 1493 6.639563 ACTGTTGCCACTTATTGTTTTCTTT 58.360 32.000 0.00 0.00 0.00 2.52
650 1494 7.102993 ACTGTTGCCACTTATTGTTTTCTTTT 58.897 30.769 0.00 0.00 0.00 2.27
651 1495 8.254508 ACTGTTGCCACTTATTGTTTTCTTTTA 58.745 29.630 0.00 0.00 0.00 1.52
652 1496 9.092876 CTGTTGCCACTTATTGTTTTCTTTTAA 57.907 29.630 0.00 0.00 0.00 1.52
653 1497 9.436957 TGTTGCCACTTATTGTTTTCTTTTAAA 57.563 25.926 0.00 0.00 0.00 1.52
691 1535 8.966194 GTGTTAGAGTTAGTACAAAGTTGAGAC 58.034 37.037 0.00 0.00 0.00 3.36
708 1552 5.697473 TGAGACATTTATTTTGCAACGGA 57.303 34.783 0.00 0.00 0.00 4.69
709 1553 5.698832 TGAGACATTTATTTTGCAACGGAG 58.301 37.500 0.00 0.00 0.00 4.63
713 1557 6.036577 ACATTTATTTTGCAACGGAGGAAT 57.963 33.333 0.00 0.00 0.00 3.01
714 1558 7.122055 AGACATTTATTTTGCAACGGAGGAATA 59.878 33.333 0.00 0.00 0.00 1.75
715 1559 7.781056 ACATTTATTTTGCAACGGAGGAATAT 58.219 30.769 0.00 0.00 0.00 1.28
908 1767 3.684305 TCTCCACGCTCACACAATTTATG 59.316 43.478 0.00 0.00 0.00 1.90
963 1822 2.363018 TCCCTCACTGCTCCTCGG 60.363 66.667 0.00 0.00 0.00 4.63
1184 2043 3.264706 TCCCTGTTTTGGTATCGGAATGA 59.735 43.478 0.00 0.00 0.00 2.57
1191 2050 3.520290 TGGTATCGGAATGACACAGAC 57.480 47.619 0.00 0.00 0.00 3.51
1462 2321 5.023533 TGTCAGCATATCTTACTTCCACC 57.976 43.478 0.00 0.00 0.00 4.61
1463 2322 4.716784 TGTCAGCATATCTTACTTCCACCT 59.283 41.667 0.00 0.00 0.00 4.00
1693 2555 4.289672 ACAGAGTTCAGGGTGATATGGTTT 59.710 41.667 0.00 0.00 0.00 3.27
1699 2561 6.096846 AGTTCAGGGTGATATGGTTTTTATGC 59.903 38.462 0.00 0.00 0.00 3.14
1933 2800 7.882755 TGGACCAAATAGAGGGAATAAAGATT 58.117 34.615 0.00 0.00 0.00 2.40
2014 2881 7.223387 CCTTTAAATTCATACTGCCAAATCAGC 59.777 37.037 0.00 0.00 37.59 4.26
2243 3110 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2297 3164 7.613551 ACGTCTAGATACATCCCCTTTTATT 57.386 36.000 0.00 0.00 0.00 1.40
2682 3550 3.507233 GGACATGAGGTTTGCTGATTTGA 59.493 43.478 0.00 0.00 0.00 2.69
2703 3571 2.000429 GCCTTCAGCAATGCGAAATT 58.000 45.000 11.98 0.00 42.97 1.82
2830 3699 2.948979 TGGTTCTTTTGTCGACAAGCAT 59.051 40.909 28.21 0.00 37.15 3.79
2908 3777 2.693591 CCGCCTCATGAAGAAGGTACTA 59.306 50.000 0.00 0.00 38.49 1.82
3504 4373 3.581024 AGCTTTGTGCCATATTGTGTG 57.419 42.857 0.00 0.00 44.23 3.82
3537 4406 5.567423 GCCAAACCAGCTGAACTCATATTTT 60.567 40.000 17.39 0.00 0.00 1.82
3585 4454 6.478512 TTTTTGGAGGTTTTCATAGTGCTT 57.521 33.333 0.00 0.00 0.00 3.91
4143 5014 4.900054 ACAGTACAGTTTGTTACTCCCTCT 59.100 41.667 0.00 0.00 33.85 3.69
4160 5031 8.338072 ACTCCCTCTGTAACATATATAAGACG 57.662 38.462 0.00 0.00 0.00 4.18
4225 5098 3.412386 ACAGAGGGAGTACAATTTGTGC 58.588 45.455 12.30 10.76 32.95 4.57
4273 5146 5.220931 GGATAATCAAAGCATCGCAAAGTCT 60.221 40.000 0.00 0.00 0.00 3.24
4445 5318 1.021202 CTTGTCAACTTTGCCCGTCA 58.979 50.000 0.00 0.00 0.00 4.35
4698 5574 1.406887 CGGATAGTGGGTTCCTTGTGG 60.407 57.143 0.00 0.00 0.00 4.17
4755 5631 2.039480 AGTCTAGCATGCATGTATGGGG 59.961 50.000 26.79 11.91 0.00 4.96
4938 5815 4.262164 CCTGTTGCTTATGCTCTTGGTTTT 60.262 41.667 1.96 0.00 40.48 2.43
5199 6121 6.790232 AAAATCCTTCAGGTTTCACTTGAA 57.210 33.333 1.96 1.96 41.09 2.69
5350 6286 1.810412 GCACTGTTCCGGAACTTCTGT 60.810 52.381 39.21 29.17 41.67 3.41
5351 6287 2.561569 CACTGTTCCGGAACTTCTGTT 58.438 47.619 39.21 19.12 41.67 3.16
5352 6288 3.724374 CACTGTTCCGGAACTTCTGTTA 58.276 45.455 39.21 21.62 41.67 2.41
5353 6289 3.741344 CACTGTTCCGGAACTTCTGTTAG 59.259 47.826 39.21 29.61 41.67 2.34
5655 6593 1.136828 ACTGGGCCACAACTAACTGA 58.863 50.000 0.00 0.00 0.00 3.41
6741 10055 7.609532 GCAACTTATCTCTATTTCATAGCCCAT 59.390 37.037 0.00 0.00 32.85 4.00
6813 10678 1.328279 TGTCAGGACATGTGTCGTCT 58.672 50.000 1.15 0.00 45.65 4.18
7147 11013 1.557099 TTGACATAGTCCTGACCGCT 58.443 50.000 0.00 0.00 0.00 5.52
7164 11030 1.264020 CGCTAAAGCAGACAAGTTGCA 59.736 47.619 1.81 0.00 43.92 4.08
7175 11041 5.464389 GCAGACAAGTTGCATTCAAATTCTT 59.536 36.000 1.81 0.00 38.29 2.52
7232 11098 4.403113 TGCTTGCAACATTGGATGATACAT 59.597 37.500 0.00 0.00 0.00 2.29
7368 11234 1.152247 TGTGGTGCTGGAGAGGAGT 60.152 57.895 0.00 0.00 0.00 3.85
7423 11289 2.840102 CGAGAAGGCCTCCGGGAT 60.840 66.667 5.23 0.00 38.71 3.85
7685 11552 4.094442 CAGTTAAACCTTAGCCCGTCATTC 59.906 45.833 0.00 0.00 0.00 2.67
7742 11609 7.341256 ACAATTATCCTGAGAAATGCATGAGTT 59.659 33.333 0.00 0.00 0.00 3.01
7847 11714 2.254546 TGCTCCTTGTTGATGACGTT 57.745 45.000 0.00 0.00 0.00 3.99
7903 11770 4.905456 TGTGGAATTTATAGTCGAGGGGAT 59.095 41.667 0.00 0.00 0.00 3.85
7968 11923 7.289317 ACACGATATAGTTTAGATTCCCAGGAA 59.711 37.037 0.68 0.68 38.59 3.36
8054 12009 1.675641 CCCTTGTGGCTTTCGAGGG 60.676 63.158 13.02 13.02 46.40 4.30
8055 12010 2.335712 CCTTGTGGCTTTCGAGGGC 61.336 63.158 7.00 7.00 33.93 5.19
8101 12056 9.495572 GGATTAATGTTGTTAGAAGGGATAGAG 57.504 37.037 0.00 0.00 0.00 2.43
8104 12059 6.739331 ATGTTGTTAGAAGGGATAGAGAGG 57.261 41.667 0.00 0.00 0.00 3.69
8118 12073 1.765314 AGAGAGGGATTGGTGGAATCG 59.235 52.381 0.00 0.00 41.45 3.34
8125 12080 2.817258 GGATTGGTGGAATCGTTGTTGA 59.183 45.455 0.00 0.00 41.45 3.18
8129 12084 4.235939 TGGTGGAATCGTTGTTGAATTG 57.764 40.909 0.00 0.00 0.00 2.32
8132 12087 4.298332 GTGGAATCGTTGTTGAATTGCTT 58.702 39.130 0.00 0.00 0.00 3.91
8144 12099 0.962356 AATTGCTTGAGCCTCGTGGG 60.962 55.000 5.54 0.00 41.18 4.61
8209 12168 7.603024 GCAAGGTAGAATAAATCCTACGCTATT 59.397 37.037 0.00 0.00 36.89 1.73
8240 12199 6.618287 TCTTAAATAACAATGATGCGGAGG 57.382 37.500 0.00 0.00 0.00 4.30
8265 12224 2.421388 CCACGTTCATCCCCATGTACAT 60.421 50.000 1.41 1.41 31.38 2.29
8283 15862 3.432378 ACATTCCGACTACTCTCCAAGT 58.568 45.455 0.00 0.00 42.33 3.16
8284 15863 3.833070 ACATTCCGACTACTCTCCAAGTT 59.167 43.478 0.00 0.00 39.55 2.66
8289 15868 3.006537 CCGACTACTCTCCAAGTTCCAAA 59.993 47.826 0.00 0.00 39.55 3.28
8355 15934 0.609681 AACTCGCTCCTCTCCGAACT 60.610 55.000 0.00 0.00 32.56 3.01
8395 15974 2.500098 GACATGGCTACTACCTCCAACA 59.500 50.000 0.00 0.00 33.04 3.33
8398 15977 2.546899 TGGCTACTACCTCCAACATGT 58.453 47.619 0.00 0.00 0.00 3.21
8413 15992 4.440940 CCAACATGTGTGCTATGCATGATT 60.441 41.667 10.16 0.00 41.91 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.919494 GCGCAGGGGGTTCACTTTG 61.919 63.158 0.30 0.00 0.00 2.77
3 4 3.850098 CTTGCGCAGGGGGTTCACT 62.850 63.158 12.39 0.00 0.00 3.41
4 5 2.741486 TACTTGCGCAGGGGGTTCAC 62.741 60.000 24.27 0.00 0.00 3.18
5 6 2.521451 TACTTGCGCAGGGGGTTCA 61.521 57.895 24.27 0.00 0.00 3.18
6 7 2.038837 GTACTTGCGCAGGGGGTTC 61.039 63.158 24.27 9.56 0.00 3.62
7 8 2.033602 GTACTTGCGCAGGGGGTT 59.966 61.111 24.27 4.97 0.00 4.11
8 9 1.268992 TATGTACTTGCGCAGGGGGT 61.269 55.000 24.27 16.58 0.00 4.95
9 10 0.532862 CTATGTACTTGCGCAGGGGG 60.533 60.000 24.27 11.74 0.00 5.40
10 11 0.464036 TCTATGTACTTGCGCAGGGG 59.536 55.000 24.27 14.20 0.00 4.79
11 12 1.137086 AGTCTATGTACTTGCGCAGGG 59.863 52.381 24.27 16.70 0.00 4.45
12 13 2.196749 CAGTCTATGTACTTGCGCAGG 58.803 52.381 19.01 19.01 0.00 4.85
13 14 2.881074 ACAGTCTATGTACTTGCGCAG 58.119 47.619 11.31 7.81 41.60 5.18
14 15 4.649088 ATACAGTCTATGTACTTGCGCA 57.351 40.909 5.66 5.66 47.00 6.09
15 16 5.331607 CGAAATACAGTCTATGTACTTGCGC 60.332 44.000 0.00 0.00 47.00 6.09
16 17 5.173312 CCGAAATACAGTCTATGTACTTGCG 59.827 44.000 0.00 0.00 47.00 4.85
17 18 5.462398 CCCGAAATACAGTCTATGTACTTGC 59.538 44.000 0.00 0.00 47.00 4.01
18 19 6.570692 ACCCGAAATACAGTCTATGTACTTG 58.429 40.000 0.00 0.00 47.00 3.16
19 20 6.786967 ACCCGAAATACAGTCTATGTACTT 57.213 37.500 0.00 0.00 47.00 2.24
20 21 8.474710 AATACCCGAAATACAGTCTATGTACT 57.525 34.615 0.00 0.00 47.00 2.73
21 22 9.189723 GAAATACCCGAAATACAGTCTATGTAC 57.810 37.037 0.00 0.00 47.00 2.90
23 24 6.921857 CGAAATACCCGAAATACAGTCTATGT 59.078 38.462 0.00 0.00 46.45 2.29
24 25 7.143340 TCGAAATACCCGAAATACAGTCTATG 58.857 38.462 0.00 0.00 32.64 2.23
25 26 7.281040 TCGAAATACCCGAAATACAGTCTAT 57.719 36.000 0.00 0.00 32.64 1.98
26 27 6.698008 TCGAAATACCCGAAATACAGTCTA 57.302 37.500 0.00 0.00 32.64 2.59
27 28 5.587388 TCGAAATACCCGAAATACAGTCT 57.413 39.130 0.00 0.00 32.64 3.24
28 29 5.809051 ACTTCGAAATACCCGAAATACAGTC 59.191 40.000 0.00 0.00 44.08 3.51
29 30 5.727434 ACTTCGAAATACCCGAAATACAGT 58.273 37.500 0.00 0.00 44.08 3.55
30 31 6.976925 ACTACTTCGAAATACCCGAAATACAG 59.023 38.462 0.00 0.00 44.08 2.74
31 32 6.753279 CACTACTTCGAAATACCCGAAATACA 59.247 38.462 0.00 0.00 44.08 2.29
32 33 6.199719 CCACTACTTCGAAATACCCGAAATAC 59.800 42.308 0.00 0.00 44.08 1.89
33 34 6.127366 ACCACTACTTCGAAATACCCGAAATA 60.127 38.462 0.00 0.00 44.08 1.40
34 35 5.114081 CCACTACTTCGAAATACCCGAAAT 58.886 41.667 0.00 0.00 44.08 2.17
35 36 4.021192 ACCACTACTTCGAAATACCCGAAA 60.021 41.667 0.00 0.00 44.08 3.46
36 37 3.511146 ACCACTACTTCGAAATACCCGAA 59.489 43.478 0.00 0.00 42.79 4.30
37 38 3.091545 ACCACTACTTCGAAATACCCGA 58.908 45.455 0.00 0.00 0.00 5.14
38 39 3.515330 ACCACTACTTCGAAATACCCG 57.485 47.619 0.00 0.00 0.00 5.28
39 40 5.588958 AGTACCACTACTTCGAAATACCC 57.411 43.478 0.00 0.00 27.62 3.69
40 41 8.246871 ACTTAAGTACCACTACTTCGAAATACC 58.753 37.037 6.26 0.00 41.51 2.73
41 42 9.070149 CACTTAAGTACCACTACTTCGAAATAC 57.930 37.037 8.04 0.00 41.51 1.89
42 43 8.796475 ACACTTAAGTACCACTACTTCGAAATA 58.204 33.333 8.04 0.00 41.51 1.40
43 44 7.664758 ACACTTAAGTACCACTACTTCGAAAT 58.335 34.615 8.04 0.00 41.51 2.17
44 45 7.042797 ACACTTAAGTACCACTACTTCGAAA 57.957 36.000 8.04 0.00 41.51 3.46
45 46 6.262944 TGACACTTAAGTACCACTACTTCGAA 59.737 38.462 8.04 0.00 41.51 3.71
46 47 5.764686 TGACACTTAAGTACCACTACTTCGA 59.235 40.000 8.04 0.00 41.51 3.71
47 48 6.005583 TGACACTTAAGTACCACTACTTCG 57.994 41.667 8.04 0.00 41.51 3.79
48 49 5.862860 GCTGACACTTAAGTACCACTACTTC 59.137 44.000 8.04 0.00 41.51 3.01
49 50 5.279356 GGCTGACACTTAAGTACCACTACTT 60.279 44.000 8.04 0.00 44.14 2.24
50 51 4.220163 GGCTGACACTTAAGTACCACTACT 59.780 45.833 8.04 0.00 34.38 2.57
51 52 4.492611 GGCTGACACTTAAGTACCACTAC 58.507 47.826 8.04 0.58 0.00 2.73
52 53 3.192001 CGGCTGACACTTAAGTACCACTA 59.808 47.826 8.04 0.00 0.00 2.74
53 54 2.029290 CGGCTGACACTTAAGTACCACT 60.029 50.000 8.04 0.00 0.00 4.00
54 55 2.029649 TCGGCTGACACTTAAGTACCAC 60.030 50.000 8.04 1.17 0.00 4.16
55 56 2.029649 GTCGGCTGACACTTAAGTACCA 60.030 50.000 21.02 8.21 44.82 3.25
56 57 2.603953 GTCGGCTGACACTTAAGTACC 58.396 52.381 21.02 3.73 44.82 3.34
67 68 1.940613 ACAAAACTTGAGTCGGCTGAC 59.059 47.619 18.39 18.39 45.86 3.51
68 69 1.939934 CACAAAACTTGAGTCGGCTGA 59.060 47.619 0.00 0.00 0.00 4.26
69 70 1.939934 TCACAAAACTTGAGTCGGCTG 59.060 47.619 0.00 0.00 0.00 4.85
70 71 1.940613 GTCACAAAACTTGAGTCGGCT 59.059 47.619 0.00 0.00 0.00 5.52
71 72 1.002792 GGTCACAAAACTTGAGTCGGC 60.003 52.381 0.00 0.00 0.00 5.54
72 73 2.561569 AGGTCACAAAACTTGAGTCGG 58.438 47.619 0.00 0.00 0.00 4.79
73 74 7.330946 TCATTATAGGTCACAAAACTTGAGTCG 59.669 37.037 0.00 0.00 0.00 4.18
74 75 8.547967 TCATTATAGGTCACAAAACTTGAGTC 57.452 34.615 0.00 0.00 0.00 3.36
75 76 8.918202 TTCATTATAGGTCACAAAACTTGAGT 57.082 30.769 0.00 0.00 0.00 3.41
97 98 8.656849 GCGTCATTCTAACTAGAGAAAAATTCA 58.343 33.333 0.00 0.00 38.89 2.57
98 99 8.117370 GGCGTCATTCTAACTAGAGAAAAATTC 58.883 37.037 0.00 0.00 38.89 2.17
99 100 7.065923 GGGCGTCATTCTAACTAGAGAAAAATT 59.934 37.037 0.00 0.00 38.89 1.82
100 101 6.539103 GGGCGTCATTCTAACTAGAGAAAAAT 59.461 38.462 0.00 0.00 38.89 1.82
101 102 5.873164 GGGCGTCATTCTAACTAGAGAAAAA 59.127 40.000 0.00 0.00 38.89 1.94
102 103 5.046878 TGGGCGTCATTCTAACTAGAGAAAA 60.047 40.000 0.00 0.00 38.89 2.29
103 104 4.464951 TGGGCGTCATTCTAACTAGAGAAA 59.535 41.667 0.00 0.00 38.89 2.52
104 105 4.021229 TGGGCGTCATTCTAACTAGAGAA 58.979 43.478 0.00 0.00 39.71 2.87
105 106 3.628008 TGGGCGTCATTCTAACTAGAGA 58.372 45.455 0.00 0.00 33.21 3.10
106 107 4.113354 GTTGGGCGTCATTCTAACTAGAG 58.887 47.826 0.00 0.00 33.21 2.43
107 108 3.512329 TGTTGGGCGTCATTCTAACTAGA 59.488 43.478 0.00 0.00 0.00 2.43
108 109 3.617263 GTGTTGGGCGTCATTCTAACTAG 59.383 47.826 0.00 0.00 0.00 2.57
109 110 3.259876 AGTGTTGGGCGTCATTCTAACTA 59.740 43.478 0.00 0.00 0.00 2.24
110 111 2.038557 AGTGTTGGGCGTCATTCTAACT 59.961 45.455 0.00 0.00 0.00 2.24
111 112 2.423577 AGTGTTGGGCGTCATTCTAAC 58.576 47.619 0.00 0.00 0.00 2.34
112 113 2.851263 AGTGTTGGGCGTCATTCTAA 57.149 45.000 0.00 0.00 0.00 2.10
113 114 3.093814 TCTAGTGTTGGGCGTCATTCTA 58.906 45.455 0.00 0.00 0.00 2.10
114 115 1.899814 TCTAGTGTTGGGCGTCATTCT 59.100 47.619 0.00 0.00 0.00 2.40
115 116 2.380084 TCTAGTGTTGGGCGTCATTC 57.620 50.000 0.00 0.00 0.00 2.67
116 117 3.350219 AATCTAGTGTTGGGCGTCATT 57.650 42.857 0.00 0.00 0.00 2.57
117 118 3.009723 CAAATCTAGTGTTGGGCGTCAT 58.990 45.455 0.00 0.00 0.00 3.06
118 119 2.224426 ACAAATCTAGTGTTGGGCGTCA 60.224 45.455 11.23 0.00 0.00 4.35
119 120 2.159627 CACAAATCTAGTGTTGGGCGTC 59.840 50.000 11.23 0.00 32.44 5.19
120 121 2.151202 CACAAATCTAGTGTTGGGCGT 58.849 47.619 11.23 0.00 32.44 5.68
121 122 1.135689 GCACAAATCTAGTGTTGGGCG 60.136 52.381 16.07 5.43 43.68 6.13
122 123 2.636768 GCACAAATCTAGTGTTGGGC 57.363 50.000 16.07 16.07 46.06 5.36
123 124 2.513753 TGGCACAAATCTAGTGTTGGG 58.486 47.619 11.23 8.81 39.17 4.12
137 138 3.198417 TGAGAGCTATCAGATTTGGCACA 59.802 43.478 7.02 0.00 0.00 4.57
138 139 3.801698 TGAGAGCTATCAGATTTGGCAC 58.198 45.455 7.02 0.00 0.00 5.01
139 140 4.449131 CTTGAGAGCTATCAGATTTGGCA 58.551 43.478 11.46 0.00 0.00 4.92
140 141 3.814283 CCTTGAGAGCTATCAGATTTGGC 59.186 47.826 11.46 0.00 0.00 4.52
141 142 3.814283 GCCTTGAGAGCTATCAGATTTGG 59.186 47.826 11.46 10.63 0.00 3.28
142 143 3.493877 CGCCTTGAGAGCTATCAGATTTG 59.506 47.826 11.46 1.32 0.00 2.32
143 144 3.386078 TCGCCTTGAGAGCTATCAGATTT 59.614 43.478 11.46 0.00 0.00 2.17
144 145 2.961741 TCGCCTTGAGAGCTATCAGATT 59.038 45.455 11.46 0.00 0.00 2.40
145 146 2.295909 GTCGCCTTGAGAGCTATCAGAT 59.704 50.000 11.46 0.00 0.00 2.90
146 147 1.678627 GTCGCCTTGAGAGCTATCAGA 59.321 52.381 11.46 2.50 0.00 3.27
147 148 1.599171 CGTCGCCTTGAGAGCTATCAG 60.599 57.143 11.46 2.09 0.00 2.90
148 149 0.382158 CGTCGCCTTGAGAGCTATCA 59.618 55.000 7.02 7.02 0.00 2.15
149 150 0.663688 TCGTCGCCTTGAGAGCTATC 59.336 55.000 0.08 0.08 0.00 2.08
150 151 1.103803 TTCGTCGCCTTGAGAGCTAT 58.896 50.000 0.00 0.00 0.00 2.97
151 152 1.065701 GATTCGTCGCCTTGAGAGCTA 59.934 52.381 0.00 0.00 0.00 3.32
152 153 0.179124 GATTCGTCGCCTTGAGAGCT 60.179 55.000 0.00 0.00 0.00 4.09
157 158 5.334569 CCTTTTAAAAGATTCGTCGCCTTGA 60.335 40.000 26.11 0.00 38.28 3.02
159 160 4.758165 TCCTTTTAAAAGATTCGTCGCCTT 59.242 37.500 26.11 0.00 38.28 4.35
196 198 8.856103 GCAAATTATTTTTAGGGGAGTGCTATA 58.144 33.333 0.00 0.00 0.00 1.31
235 1010 0.168128 GGTATGAACCTTGCGTGCAC 59.832 55.000 6.82 6.82 43.08 4.57
240 1015 2.223249 CCGATTTGGTATGAACCTTGCG 60.223 50.000 0.00 0.00 46.91 4.85
271 1046 2.288666 TGATTCATTTACAGCCGAGCC 58.711 47.619 0.00 0.00 0.00 4.70
272 1047 4.355543 TTTGATTCATTTACAGCCGAGC 57.644 40.909 0.00 0.00 0.00 5.03
277 1052 9.118236 GAGTACTTGTTTTGATTCATTTACAGC 57.882 33.333 0.00 0.00 0.00 4.40
320 1095 9.855361 CGTTTATTAGTGATCTAAATGCTCTTG 57.145 33.333 0.00 0.00 39.23 3.02
387 1202 0.101759 ACAGTTTGTTGCTGCTGCTG 59.898 50.000 17.00 7.12 40.48 4.41
406 1221 3.501062 CAGTCTTACGGGATCATAGCGTA 59.499 47.826 0.00 0.00 0.00 4.42
421 1236 2.029290 GGGTTCAGTCTTCGCAGTCTTA 60.029 50.000 0.00 0.00 0.00 2.10
423 1238 0.318762 GGGTTCAGTCTTCGCAGTCT 59.681 55.000 0.00 0.00 0.00 3.24
444 1259 3.998341 GGGATTTAACAGTGACGCACTAA 59.002 43.478 11.31 4.39 43.43 2.24
445 1260 3.592059 GGGATTTAACAGTGACGCACTA 58.408 45.455 11.31 0.00 43.43 2.74
450 1265 1.434555 TGCGGGATTTAACAGTGACG 58.565 50.000 0.00 0.00 0.00 4.35
505 1320 2.028748 GCCGAAAGTGTCTGGTTAGGTA 60.029 50.000 0.00 0.00 0.00 3.08
509 1324 1.139256 TGTGCCGAAAGTGTCTGGTTA 59.861 47.619 0.00 0.00 0.00 2.85
514 1329 0.180406 AACCTGTGCCGAAAGTGTCT 59.820 50.000 0.00 0.00 0.00 3.41
524 1339 0.034337 TGTAGTCGGAAACCTGTGCC 59.966 55.000 0.00 0.00 0.00 5.01
536 1351 7.600375 AGCCAACTTCATTATATCATGTAGTCG 59.400 37.037 8.95 0.19 34.64 4.18
562 1377 3.936564 GGAAAATACCCAAAATGCAGCA 58.063 40.909 0.00 0.00 0.00 4.41
583 1427 4.380867 CGAAAGAAGAAATTGACCCATGGG 60.381 45.833 30.23 30.23 42.03 4.00
600 1444 7.841915 TGCATGATATCTTTGTTACGAAAGA 57.158 32.000 3.98 10.59 44.17 2.52
662 1506 9.826574 TCAACTTTGTACTAACTCTAACACAAT 57.173 29.630 0.00 0.00 0.00 2.71
663 1507 9.309516 CTCAACTTTGTACTAACTCTAACACAA 57.690 33.333 0.00 0.00 0.00 3.33
664 1508 8.689061 TCTCAACTTTGTACTAACTCTAACACA 58.311 33.333 0.00 0.00 0.00 3.72
665 1509 8.966194 GTCTCAACTTTGTACTAACTCTAACAC 58.034 37.037 0.00 0.00 0.00 3.32
666 1510 8.689061 TGTCTCAACTTTGTACTAACTCTAACA 58.311 33.333 0.00 0.00 0.00 2.41
667 1511 9.694137 ATGTCTCAACTTTGTACTAACTCTAAC 57.306 33.333 0.00 0.00 0.00 2.34
680 1524 7.788846 CGTTGCAAAATAAATGTCTCAACTTTG 59.211 33.333 0.00 0.00 32.76 2.77
687 1531 5.095490 CCTCCGTTGCAAAATAAATGTCTC 58.905 41.667 0.00 0.00 0.00 3.36
691 1535 8.647143 AATATTCCTCCGTTGCAAAATAAATG 57.353 30.769 0.00 0.00 0.00 2.32
719 1563 6.723977 TGCCCTTACCTCAGAAAACAAATATT 59.276 34.615 0.00 0.00 0.00 1.28
908 1767 1.227674 CCACTGGGCGAGGAATAGC 60.228 63.158 0.51 0.00 0.00 2.97
963 1822 3.425193 CGATGCAAAAGCAGTACAAAACC 59.575 43.478 0.00 0.00 0.00 3.27
1184 2043 3.402628 ACTAATTCGCCTTGTCTGTGT 57.597 42.857 0.00 0.00 0.00 3.72
1246 2105 2.448542 GCCCCTGCCCTCCTGATA 60.449 66.667 0.00 0.00 0.00 2.15
1463 2322 3.661648 GGCCCCCTTCCAGCTGAA 61.662 66.667 17.39 6.85 0.00 3.02
1693 2555 8.779303 TCTTTTCTTGTGAATTACTCGCATAAA 58.221 29.630 0.00 0.00 43.99 1.40
1699 2561 7.587757 CCAGTTTCTTTTCTTGTGAATTACTCG 59.412 37.037 0.00 0.00 31.56 4.18
1933 2800 4.620723 TCAACTTTAGAGGGATCTAGCCA 58.379 43.478 0.00 0.00 0.00 4.75
1974 2841 7.700846 TGAATTTAAAGGGGAATACACCACTA 58.299 34.615 0.00 0.00 43.63 2.74
1984 2851 5.584913 TGGCAGTATGAATTTAAAGGGGAA 58.415 37.500 0.00 0.00 39.69 3.97
2014 2881 1.532604 TACAGTGCTGTGGGGACTCG 61.533 60.000 14.44 0.00 44.82 4.18
2270 3137 9.986157 ATAAAAGGGGATGTATCTAGACGTATA 57.014 33.333 0.00 0.00 0.00 1.47
2297 3164 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
2830 3699 1.977854 CCCATCTCGATATGGTTCCCA 59.022 52.381 23.76 0.00 44.29 4.37
3581 4450 4.199310 AGTTCTACACAGAAAAGCAAGCA 58.801 39.130 0.00 0.00 42.41 3.91
3585 4454 6.942532 AATCAAGTTCTACACAGAAAAGCA 57.057 33.333 0.00 0.00 42.41 3.91
3895 4764 8.455903 TTTCAGATGAACTTCAGAAGATGTTT 57.544 30.769 17.56 0.10 40.84 2.83
4152 5023 7.138081 TGTCGTAGTGTCAAAAACGTCTTATA 58.862 34.615 0.00 0.00 36.73 0.98
4153 5024 5.978919 TGTCGTAGTGTCAAAAACGTCTTAT 59.021 36.000 0.00 0.00 36.73 1.73
4154 5025 5.339177 TGTCGTAGTGTCAAAAACGTCTTA 58.661 37.500 0.00 0.00 36.73 2.10
4155 5026 4.175516 TGTCGTAGTGTCAAAAACGTCTT 58.824 39.130 0.00 0.00 36.73 3.01
4157 5028 3.549070 ACTGTCGTAGTGTCAAAAACGTC 59.451 43.478 0.00 0.00 38.49 4.34
4158 5029 3.514645 ACTGTCGTAGTGTCAAAAACGT 58.485 40.909 0.00 0.00 38.49 3.99
4173 5046 3.306166 AGAAGACGTTTTTGACACTGTCG 59.694 43.478 4.71 0.00 34.95 4.35
4225 5098 7.759886 TCCATAAGACAGAAGAATAACAGAACG 59.240 37.037 0.00 0.00 0.00 3.95
4398 5271 2.749076 AGTGCTTATTTTGCGCTCATGA 59.251 40.909 9.73 0.00 46.70 3.07
4400 5273 2.159338 CCAGTGCTTATTTTGCGCTCAT 60.159 45.455 9.73 0.00 46.70 2.90
4445 5318 6.840780 AAGCAATATCCAGCAAACTAAAGT 57.159 33.333 0.00 0.00 0.00 2.66
4698 5574 7.062722 GCAAGGAAGATGAAATAAAAGCAAGTC 59.937 37.037 0.00 0.00 0.00 3.01
4755 5631 8.648557 AAAACTTAAAGGAATTGTTCTGAAGC 57.351 30.769 0.00 0.00 0.00 3.86
4938 5815 7.454260 AGCACTGATATTATCACAGTCGATA 57.546 36.000 2.14 0.00 41.93 2.92
5175 6097 6.790232 TCAAGTGAAACCTGAAGGATTTTT 57.210 33.333 2.62 0.00 33.62 1.94
5199 6121 2.765807 CCTCTCGGCATCCCCACT 60.766 66.667 0.00 0.00 0.00 4.00
5350 6286 2.767960 GGATCCGGTTCCTACCAACTAA 59.232 50.000 22.23 0.00 45.31 2.24
5351 6287 2.391678 GGATCCGGTTCCTACCAACTA 58.608 52.381 22.23 0.00 45.31 2.24
5352 6288 1.201424 GGATCCGGTTCCTACCAACT 58.799 55.000 22.23 0.00 45.31 3.16
5353 6289 0.179702 GGGATCCGGTTCCTACCAAC 59.820 60.000 26.93 9.09 45.31 3.77
5471 6407 2.899505 GCCCCTGCTCTCTCTCAC 59.100 66.667 0.00 0.00 33.53 3.51
5472 6408 2.757508 CGCCCCTGCTCTCTCTCA 60.758 66.667 0.00 0.00 34.43 3.27
5655 6593 1.279271 CGGCATATTAGGGGCTTAGCT 59.721 52.381 3.59 0.00 0.00 3.32
5840 9050 1.136695 CAAGCTGCACCCAACAAAAGA 59.863 47.619 1.02 0.00 0.00 2.52
6397 9711 4.400884 TGCACAAATCACCAAGTAAACTGT 59.599 37.500 0.00 0.00 0.00 3.55
6658 9972 4.394729 ACGGAACTGCTTTAAAATGAGGA 58.605 39.130 0.00 0.00 0.00 3.71
6741 10055 3.450904 AGGAGTATTAGGTCCAAGTGCA 58.549 45.455 0.00 0.00 35.02 4.57
6795 10660 1.000163 ACAGACGACACATGTCCTGAC 60.000 52.381 19.12 4.13 41.86 3.51
6813 10678 0.467844 ACTGTGCAGGCCAATCAACA 60.468 50.000 5.01 0.69 0.00 3.33
7147 11013 5.512753 TTGAATGCAACTTGTCTGCTTTA 57.487 34.783 0.00 0.00 40.59 1.85
7232 11098 7.546667 GGTCACATTTACTATTTCCTAACGACA 59.453 37.037 0.00 0.00 0.00 4.35
7368 11234 6.112734 TGAGCTTCTTTCGAATGGCTAATAA 58.887 36.000 12.55 0.00 32.67 1.40
7392 11258 2.534298 CTTCTCGCTGTGATCGACAAT 58.466 47.619 0.00 0.00 32.80 2.71
7423 11289 4.573900 ACTTGTTTGCAACATTTGAACCA 58.426 34.783 0.00 0.00 41.79 3.67
7537 11404 1.534595 GGCAGCACCAAATCTAATGCG 60.535 52.381 0.00 0.00 42.98 4.73
7685 11552 6.432107 TGTGCAATATGACATCAATCATTCG 58.568 36.000 0.00 0.00 39.97 3.34
7847 11714 2.744741 TCGCAATCGCAATTAAGACCAA 59.255 40.909 0.00 0.00 38.40 3.67
7903 11770 6.659242 TGTGTTCTAGATCTACTGATGTGACA 59.341 38.462 0.00 0.00 32.19 3.58
7968 11923 6.067217 AGCAAAGAGTATGTCATTTACCCT 57.933 37.500 0.00 0.00 0.00 4.34
8052 12007 6.831868 TCCCTTGAGTATTTTGTTATTAGCCC 59.168 38.462 0.00 0.00 0.00 5.19
8101 12056 2.017049 CAACGATTCCACCAATCCCTC 58.983 52.381 0.00 0.00 38.17 4.30
8102 12057 1.354368 ACAACGATTCCACCAATCCCT 59.646 47.619 0.00 0.00 38.17 4.20
8103 12058 1.834188 ACAACGATTCCACCAATCCC 58.166 50.000 0.00 0.00 38.17 3.85
8104 12059 2.817258 TCAACAACGATTCCACCAATCC 59.183 45.455 0.00 0.00 38.17 3.01
8118 12073 3.311966 GAGGCTCAAGCAATTCAACAAC 58.688 45.455 10.25 0.00 44.36 3.32
8125 12080 0.962356 CCCACGAGGCTCAAGCAATT 60.962 55.000 15.95 0.00 44.36 2.32
8129 12084 0.750850 TATACCCACGAGGCTCAAGC 59.249 55.000 15.95 0.00 40.58 4.01
8132 12087 6.102174 TCCTATATATATACCCACGAGGCTCA 59.898 42.308 15.95 0.00 40.58 4.26
8179 12138 6.202954 CGTAGGATTTATTCTACCTTGCCTTG 59.797 42.308 3.20 0.00 34.07 3.61
8215 12174 7.338196 TCCTCCGCATCATTGTTATTTAAGAAA 59.662 33.333 0.00 0.00 0.00 2.52
8218 12177 6.618287 TCCTCCGCATCATTGTTATTTAAG 57.382 37.500 0.00 0.00 0.00 1.85
8219 12178 6.206634 GGATCCTCCGCATCATTGTTATTTAA 59.793 38.462 3.84 0.00 0.00 1.52
8240 12199 0.474184 ATGGGGATGAACGTGGGATC 59.526 55.000 0.00 0.00 0.00 3.36
8265 12224 2.824341 GGAACTTGGAGAGTAGTCGGAA 59.176 50.000 0.00 0.00 37.72 4.30
8289 15868 2.619177 CGAGGTCTCGTCATATGTCCTT 59.381 50.000 11.76 0.00 46.99 3.36
8319 15898 3.476552 GAGTTCACCTTGTGTCCAATGA 58.523 45.455 0.00 0.00 34.79 2.57
8395 15974 4.722220 ACCTAATCATGCATAGCACACAT 58.278 39.130 0.00 0.00 43.04 3.21
8398 15977 5.551305 AGTACCTAATCATGCATAGCACA 57.449 39.130 0.00 0.00 43.04 4.57
8413 15992 3.698040 CGTGGCTTTCCTCTAAGTACCTA 59.302 47.826 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.