Multiple sequence alignment - TraesCS2A01G238300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G238300 chr2A 100.000 3257 0 0 1 3257 320312309 320315565 0.000000e+00 6015.0
1 TraesCS2A01G238300 chr2A 86.989 1468 170 21 1 1459 288062610 288061155 0.000000e+00 1633.0
2 TraesCS2A01G238300 chr2A 90.088 565 50 6 897 1460 373640530 373639971 0.000000e+00 728.0
3 TraesCS2A01G238300 chr2A 88.339 566 58 7 897 1460 373632552 373631993 0.000000e+00 673.0
4 TraesCS2A01G238300 chr2A 77.558 860 141 33 1 836 211093893 211094724 3.800000e-129 472.0
5 TraesCS2A01G238300 chr2A 94.340 53 3 0 2523 2575 584759211 584759263 7.490000e-12 82.4
6 TraesCS2A01G238300 chr6D 94.461 686 38 0 2572 3257 170984826 170984141 0.000000e+00 1057.0
7 TraesCS2A01G238300 chr6D 83.658 771 100 25 2 760 253916151 253915395 0.000000e+00 702.0
8 TraesCS2A01G238300 chr7D 92.566 686 51 0 2572 3257 364390353 364389668 0.000000e+00 985.0
9 TraesCS2A01G238300 chr3D 92.566 686 51 0 2572 3257 267271975 267272660 0.000000e+00 985.0
10 TraesCS2A01G238300 chr3D 88.462 520 41 15 1956 2466 368637874 368638383 7.730000e-171 610.0
11 TraesCS2A01G238300 chr2D 92.576 687 49 2 2572 3257 145702744 145702059 0.000000e+00 985.0
12 TraesCS2A01G238300 chr2D 92.566 686 51 0 2572 3257 247263462 247264147 0.000000e+00 985.0
13 TraesCS2A01G238300 chr2D 92.420 686 52 0 2572 3257 297279960 297279275 0.000000e+00 979.0
14 TraesCS2A01G238300 chr2D 88.381 525 48 11 1949 2466 424190244 424190762 1.280000e-173 619.0
15 TraesCS2A01G238300 chr2D 88.280 529 41 17 1949 2466 424198079 424198597 5.970000e-172 614.0
16 TraesCS2A01G238300 chr2D 87.097 124 14 1 1462 1583 347231091 347231214 4.380000e-29 139.0
17 TraesCS2A01G238300 chr1B 92.420 686 51 1 2572 3257 297738929 297739613 0.000000e+00 977.0
18 TraesCS2A01G238300 chr1B 86.381 536 59 12 1993 2521 450837875 450837347 1.010000e-159 573.0
19 TraesCS2A01G238300 chr4D 92.297 688 49 3 2572 3257 205138289 205137604 0.000000e+00 974.0
20 TraesCS2A01G238300 chr4D 83.825 779 102 21 1 767 199647579 199648345 0.000000e+00 719.0
21 TraesCS2A01G238300 chr4D 83.355 769 100 24 1 755 199639685 199640439 0.000000e+00 686.0
22 TraesCS2A01G238300 chr4D 86.501 563 49 22 1949 2498 239503536 239502988 7.780000e-166 593.0
23 TraesCS2A01G238300 chr4D 88.406 69 8 0 768 836 199648467 199648535 2.080000e-12 84.2
24 TraesCS2A01G238300 chr4D 94.340 53 3 0 2523 2575 281871610 281871662 7.490000e-12 82.4
25 TraesCS2A01G238300 chr4D 88.889 63 5 2 2510 2571 237867856 237867795 3.480000e-10 76.8
26 TraesCS2A01G238300 chr1D 92.274 686 53 0 2572 3257 198611454 198610769 0.000000e+00 974.0
27 TraesCS2A01G238300 chr1D 83.829 773 100 23 1 761 63586550 63587309 0.000000e+00 712.0
28 TraesCS2A01G238300 chr1D 88.425 527 44 15 1949 2466 144586863 144586345 1.280000e-173 619.0
29 TraesCS2A01G238300 chr1D 87.902 529 44 17 1949 2466 82969012 82969531 3.590000e-169 604.0
30 TraesCS2A01G238300 chr1D 85.665 579 52 26 1906 2466 277521372 277521937 6.060000e-162 580.0
31 TraesCS2A01G238300 chr5A 83.433 839 102 25 1 814 347521973 347522799 0.000000e+00 745.0
32 TraesCS2A01G238300 chr5A 83.140 777 109 21 3 769 453311861 453312625 0.000000e+00 689.0
33 TraesCS2A01G238300 chr5A 88.864 449 45 3 898 1342 212675030 212675477 6.140000e-152 547.0
34 TraesCS2A01G238300 chr5A 87.356 435 42 5 898 1332 212682701 212683122 1.360000e-133 486.0
35 TraesCS2A01G238300 chr5A 87.681 414 45 5 932 1342 114021201 114020791 8.180000e-131 477.0
36 TraesCS2A01G238300 chr5A 79.330 537 71 25 1828 2357 233766659 233766156 1.120000e-89 340.0
37 TraesCS2A01G238300 chr5A 75.000 624 105 39 1929 2524 212965373 212964773 1.170000e-59 241.0
38 TraesCS2A01G238300 chr5A 81.673 251 29 7 2288 2524 260138168 260138415 3.320000e-45 193.0
39 TraesCS2A01G238300 chr5A 80.617 227 31 12 593 816 539289990 539290206 2.600000e-36 163.0
40 TraesCS2A01G238300 chr5A 89.773 88 9 0 806 893 443564468 443564381 2.660000e-21 113.0
41 TraesCS2A01G238300 chr5A 92.308 52 4 0 1669 1720 33720274 33720223 1.250000e-09 75.0
42 TraesCS2A01G238300 chr4A 89.855 552 51 5 897 1447 287301891 287302438 0.000000e+00 704.0
43 TraesCS2A01G238300 chr4A 88.036 443 50 3 901 1342 275364578 275364138 3.720000e-144 521.0
44 TraesCS2A01G238300 chr4A 87.668 446 50 4 898 1342 59492393 59492834 6.230000e-142 514.0
45 TraesCS2A01G238300 chr4A 79.781 638 89 29 1956 2579 278300417 278299806 8.350000e-116 427.0
46 TraesCS2A01G238300 chr4A 78.369 601 87 28 1950 2524 322923539 322924122 1.860000e-92 350.0
47 TraesCS2A01G238300 chr4A 80.769 234 22 8 2313 2524 207173038 207172806 9.350000e-36 161.0
48 TraesCS2A01G238300 chr4A 89.381 113 10 2 1336 1446 396108072 396107960 1.220000e-29 141.0
49 TraesCS2A01G238300 chr4A 91.304 69 6 0 768 836 96886544 96886612 9.620000e-16 95.3
50 TraesCS2A01G238300 chr4A 93.333 60 4 0 1489 1548 76216318 76216259 4.480000e-14 89.8
51 TraesCS2A01G238300 chr4A 85.185 81 10 2 798 877 556967013 556966934 7.490000e-12 82.4
52 TraesCS2A01G238300 chr4A 88.889 63 5 2 2510 2571 303567334 303567273 3.480000e-10 76.8
53 TraesCS2A01G238300 chr4A 84.615 78 10 2 798 874 517746068 517746144 3.480000e-10 76.8
54 TraesCS2A01G238300 chr4A 89.831 59 5 1 2513 2571 303395730 303395673 1.250000e-09 75.0
55 TraesCS2A01G238300 chr7A 83.576 755 105 19 1 746 283730517 283731261 0.000000e+00 689.0
56 TraesCS2A01G238300 chr7A 83.012 777 107 23 3 768 493102869 493103631 0.000000e+00 680.0
57 TraesCS2A01G238300 chr7A 88.722 532 44 14 1939 2466 577326686 577326167 1.270000e-178 636.0
58 TraesCS2A01G238300 chr7A 89.683 126 11 2 1590 1714 609587952 609588076 3.360000e-35 159.0
59 TraesCS2A01G238300 chr7A 87.591 137 14 3 1590 1724 609604214 609604349 4.350000e-34 156.0
60 TraesCS2A01G238300 chr7A 86.861 137 15 3 1590 1724 609595920 609596055 2.020000e-32 150.0
61 TraesCS2A01G238300 chr7A 88.710 124 11 3 1338 1459 327821215 327821093 7.280000e-32 148.0
62 TraesCS2A01G238300 chr7A 83.478 115 18 1 897 1011 658496919 658496806 4.440000e-19 106.0
63 TraesCS2A01G238300 chr7A 90.909 66 5 1 1483 1548 262070338 262070274 1.610000e-13 87.9
64 TraesCS2A01G238300 chr7A 87.879 66 7 1 1483 1548 262086346 262086282 3.480000e-10 76.8
65 TraesCS2A01G238300 chr7A 100.000 35 0 0 839 873 315908339 315908373 7.540000e-07 65.8
66 TraesCS2A01G238300 chr7A 97.143 35 1 0 839 873 326009142 326009176 3.510000e-05 60.2
67 TraesCS2A01G238300 chr1A 74.472 568 89 35 1995 2524 98984206 98984755 9.220000e-46 195.0
68 TraesCS2A01G238300 chr1A 100.000 35 0 0 839 873 99101616 99101650 7.540000e-07 65.8
69 TraesCS2A01G238300 chr1A 97.297 37 1 0 837 873 99109688 99109724 2.710000e-06 63.9
70 TraesCS2A01G238300 chr6A 91.270 126 8 3 1336 1459 497372837 497372961 5.590000e-38 169.0
71 TraesCS2A01G238300 chr6A 92.793 111 8 0 1852 1962 292791476 292791586 9.350000e-36 161.0
72 TraesCS2A01G238300 chr6A 85.915 142 14 4 1588 1724 407205837 407205697 2.620000e-31 147.0
73 TraesCS2A01G238300 chr6A 93.333 60 4 0 1489 1548 223621641 223621700 4.480000e-14 89.8
74 TraesCS2A01G238300 chr6A 93.333 60 4 0 1489 1548 223628933 223628992 4.480000e-14 89.8
75 TraesCS2A01G238300 chr6A 87.500 64 7 1 2511 2573 433978969 433978906 4.510000e-09 73.1
76 TraesCS2A01G238300 chr3A 86.466 133 16 2 1590 1721 385037084 385037215 9.420000e-31 145.0
77 TraesCS2A01G238300 chr3A 89.623 106 10 1 1336 1440 742006018 742005913 2.040000e-27 134.0
78 TraesCS2A01G238300 chr3A 91.667 96 4 3 2437 2530 169890200 169890107 2.640000e-26 130.0
79 TraesCS2A01G238300 chr3A 91.667 96 4 3 2437 2530 169898091 169897998 2.640000e-26 130.0
80 TraesCS2A01G238300 chr3A 90.909 66 5 1 1483 1548 615766379 615766443 1.610000e-13 87.9
81 TraesCS2A01G238300 chr3A 89.394 66 6 1 1483 1548 615760349 615760413 7.490000e-12 82.4
82 TraesCS2A01G238300 chr3A 95.455 44 1 1 1619 1661 68679951 68679994 5.830000e-08 69.4
83 TraesCS2A01G238300 chr3A 100.000 35 0 0 839 873 113370421 113370455 7.540000e-07 65.8
84 TraesCS2A01G238300 chr5D 92.593 54 4 0 2523 2576 11040848 11040795 9.690000e-11 78.7
85 TraesCS2A01G238300 chr6B 88.889 63 5 2 2510 2571 341899072 341899133 3.480000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G238300 chr2A 320312309 320315565 3256 False 6015.0 6015 100.0000 1 3257 1 chr2A.!!$F2 3256
1 TraesCS2A01G238300 chr2A 288061155 288062610 1455 True 1633.0 1633 86.9890 1 1459 1 chr2A.!!$R1 1458
2 TraesCS2A01G238300 chr2A 373639971 373640530 559 True 728.0 728 90.0880 897 1460 1 chr2A.!!$R3 563
3 TraesCS2A01G238300 chr2A 373631993 373632552 559 True 673.0 673 88.3390 897 1460 1 chr2A.!!$R2 563
4 TraesCS2A01G238300 chr2A 211093893 211094724 831 False 472.0 472 77.5580 1 836 1 chr2A.!!$F1 835
5 TraesCS2A01G238300 chr6D 170984141 170984826 685 True 1057.0 1057 94.4610 2572 3257 1 chr6D.!!$R1 685
6 TraesCS2A01G238300 chr6D 253915395 253916151 756 True 702.0 702 83.6580 2 760 1 chr6D.!!$R2 758
7 TraesCS2A01G238300 chr7D 364389668 364390353 685 True 985.0 985 92.5660 2572 3257 1 chr7D.!!$R1 685
8 TraesCS2A01G238300 chr3D 267271975 267272660 685 False 985.0 985 92.5660 2572 3257 1 chr3D.!!$F1 685
9 TraesCS2A01G238300 chr3D 368637874 368638383 509 False 610.0 610 88.4620 1956 2466 1 chr3D.!!$F2 510
10 TraesCS2A01G238300 chr2D 145702059 145702744 685 True 985.0 985 92.5760 2572 3257 1 chr2D.!!$R1 685
11 TraesCS2A01G238300 chr2D 247263462 247264147 685 False 985.0 985 92.5660 2572 3257 1 chr2D.!!$F1 685
12 TraesCS2A01G238300 chr2D 297279275 297279960 685 True 979.0 979 92.4200 2572 3257 1 chr2D.!!$R2 685
13 TraesCS2A01G238300 chr2D 424190244 424190762 518 False 619.0 619 88.3810 1949 2466 1 chr2D.!!$F3 517
14 TraesCS2A01G238300 chr2D 424198079 424198597 518 False 614.0 614 88.2800 1949 2466 1 chr2D.!!$F4 517
15 TraesCS2A01G238300 chr1B 297738929 297739613 684 False 977.0 977 92.4200 2572 3257 1 chr1B.!!$F1 685
16 TraesCS2A01G238300 chr1B 450837347 450837875 528 True 573.0 573 86.3810 1993 2521 1 chr1B.!!$R1 528
17 TraesCS2A01G238300 chr4D 205137604 205138289 685 True 974.0 974 92.2970 2572 3257 1 chr4D.!!$R1 685
18 TraesCS2A01G238300 chr4D 199639685 199640439 754 False 686.0 686 83.3550 1 755 1 chr4D.!!$F1 754
19 TraesCS2A01G238300 chr4D 239502988 239503536 548 True 593.0 593 86.5010 1949 2498 1 chr4D.!!$R3 549
20 TraesCS2A01G238300 chr4D 199647579 199648535 956 False 401.6 719 86.1155 1 836 2 chr4D.!!$F3 835
21 TraesCS2A01G238300 chr1D 198610769 198611454 685 True 974.0 974 92.2740 2572 3257 1 chr1D.!!$R2 685
22 TraesCS2A01G238300 chr1D 63586550 63587309 759 False 712.0 712 83.8290 1 761 1 chr1D.!!$F1 760
23 TraesCS2A01G238300 chr1D 144586345 144586863 518 True 619.0 619 88.4250 1949 2466 1 chr1D.!!$R1 517
24 TraesCS2A01G238300 chr1D 82969012 82969531 519 False 604.0 604 87.9020 1949 2466 1 chr1D.!!$F2 517
25 TraesCS2A01G238300 chr1D 277521372 277521937 565 False 580.0 580 85.6650 1906 2466 1 chr1D.!!$F3 560
26 TraesCS2A01G238300 chr5A 347521973 347522799 826 False 745.0 745 83.4330 1 814 1 chr5A.!!$F4 813
27 TraesCS2A01G238300 chr5A 453311861 453312625 764 False 689.0 689 83.1400 3 769 1 chr5A.!!$F5 766
28 TraesCS2A01G238300 chr5A 233766156 233766659 503 True 340.0 340 79.3300 1828 2357 1 chr5A.!!$R4 529
29 TraesCS2A01G238300 chr5A 212964773 212965373 600 True 241.0 241 75.0000 1929 2524 1 chr5A.!!$R3 595
30 TraesCS2A01G238300 chr4A 287301891 287302438 547 False 704.0 704 89.8550 897 1447 1 chr4A.!!$F3 550
31 TraesCS2A01G238300 chr4A 278299806 278300417 611 True 427.0 427 79.7810 1956 2579 1 chr4A.!!$R4 623
32 TraesCS2A01G238300 chr4A 322923539 322924122 583 False 350.0 350 78.3690 1950 2524 1 chr4A.!!$F4 574
33 TraesCS2A01G238300 chr7A 283730517 283731261 744 False 689.0 689 83.5760 1 746 1 chr7A.!!$F1 745
34 TraesCS2A01G238300 chr7A 493102869 493103631 762 False 680.0 680 83.0120 3 768 1 chr7A.!!$F4 765
35 TraesCS2A01G238300 chr7A 577326167 577326686 519 True 636.0 636 88.7220 1939 2466 1 chr7A.!!$R4 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 416 0.035152 TGATGCGGATGACCTTTGCT 60.035 50.0 0.0 0.0 0.00 3.91 F
1477 1655 0.035343 GGTTTGGCAGGGGACTAGAC 60.035 60.0 0.0 0.0 40.21 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 1760 0.031585 TCAACTCGGTTCCTCACGTG 59.968 55.0 9.94 9.94 0.0 4.49 R
2938 3175 0.178767 CTCATCGGGCTTGGACATCA 59.821 55.0 0.00 0.00 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.307443 AGAAGCAAGCAACAAGGTAAAC 57.693 40.909 0.00 0.00 0.00 2.01
29 30 3.677424 GCAAGCAACAAGGTAAACCAACA 60.677 43.478 1.26 0.00 38.89 3.33
31 32 4.385358 AGCAACAAGGTAAACCAACAAG 57.615 40.909 1.26 0.00 38.89 3.16
73 76 4.397103 CACAACCAACTATGATGCATGTCT 59.603 41.667 2.46 0.00 0.00 3.41
96 104 3.307339 GGTTTAAAAAGGCATGGCATGGA 60.307 43.478 27.48 0.00 0.00 3.41
172 186 3.437428 CATATTGGCGAAACACCACATG 58.563 45.455 0.00 0.00 36.76 3.21
187 201 8.635765 AACACCACATGACTTATTTAGTTCAT 57.364 30.769 0.00 0.00 37.17 2.57
244 260 1.668047 GCATTGCAAGAGGTGAAGCAC 60.668 52.381 4.94 0.00 36.62 4.40
385 410 3.402110 TGTTATCATGATGCGGATGACC 58.598 45.455 18.72 0.00 32.68 4.02
391 416 0.035152 TGATGCGGATGACCTTTGCT 60.035 50.000 0.00 0.00 0.00 3.91
407 432 8.580720 TGACCTTTGCTAGTTTTATGCAATTTA 58.419 29.630 0.00 0.00 44.55 1.40
462 492 1.902938 TTGTCATCATGGCGGAAACA 58.097 45.000 0.00 0.00 0.00 2.83
470 501 0.178947 ATGGCGGAAACAAAAGGGGA 60.179 50.000 0.00 0.00 0.00 4.81
514 549 3.604582 TGATGCCACGACAACATATTGA 58.395 40.909 0.00 0.00 39.30 2.57
519 554 3.627577 GCCACGACAACATATTGATTCCT 59.372 43.478 0.00 0.00 39.30 3.36
521 556 4.035558 CCACGACAACATATTGATTCCTGG 59.964 45.833 0.00 0.00 39.30 4.45
522 557 4.635765 CACGACAACATATTGATTCCTGGT 59.364 41.667 0.00 0.00 39.30 4.00
539 574 3.381590 CCTGGTACTCGATTGAGATGTCA 59.618 47.826 17.27 8.07 45.57 3.58
605 642 0.042131 AGGAGTGATCCCGGTAACCA 59.958 55.000 0.00 0.00 0.00 3.67
606 643 1.129058 GGAGTGATCCCGGTAACCAT 58.871 55.000 0.00 0.00 0.00 3.55
652 690 1.698506 ACGGGGAACATGCAAGAAAA 58.301 45.000 0.00 0.00 0.00 2.29
657 695 1.786579 GGAACATGCAAGAAAACACGC 59.213 47.619 0.00 0.00 0.00 5.34
731 775 0.381801 GGTCGTTCTCGGCGGTATAA 59.618 55.000 7.21 0.00 43.10 0.98
837 1012 2.435234 GTACATGTTCGGGCCGCA 60.435 61.111 23.83 15.54 0.00 5.69
870 1045 2.605818 TGTTTCGAAGGTGAACTTGACG 59.394 45.455 0.00 0.00 40.21 4.35
893 1068 0.673644 CCGTTGTTTCTGGAGGCGAT 60.674 55.000 0.00 0.00 0.00 4.58
894 1069 1.404986 CCGTTGTTTCTGGAGGCGATA 60.405 52.381 0.00 0.00 0.00 2.92
895 1070 2.343101 CGTTGTTTCTGGAGGCGATAA 58.657 47.619 0.00 0.00 0.00 1.75
933 1108 0.320697 GTGCTACAAGGGTCTTCGGT 59.679 55.000 0.00 0.00 0.00 4.69
991 1166 2.288025 GGGGTCCGACTTGCCAGTA 61.288 63.158 0.00 0.00 31.22 2.74
1019 1194 2.936202 CATGAAGGGGTATGGTCTTGG 58.064 52.381 0.00 0.00 0.00 3.61
1040 1215 1.377202 GCCTTCGATGGACTTGGCA 60.377 57.895 20.87 0.00 40.04 4.92
1041 1216 0.960364 GCCTTCGATGGACTTGGCAA 60.960 55.000 20.87 0.00 40.04 4.52
1042 1217 1.533625 CCTTCGATGGACTTGGCAAA 58.466 50.000 11.88 0.00 0.00 3.68
1096 1273 0.610687 GACAGAGGTCAACAGGGAGG 59.389 60.000 0.00 0.00 43.73 4.30
1099 1276 0.191064 AGAGGTCAACAGGGAGGTCA 59.809 55.000 0.00 0.00 0.00 4.02
1123 1300 1.364626 GGAACTCGTCAGGCAGCATG 61.365 60.000 0.00 0.00 40.87 4.06
1130 1307 4.435970 CAGGCAGCATGGGAGGCA 62.436 66.667 0.00 0.00 35.86 4.75
1142 1319 1.380302 GGAGGCAGGAGAAAAGGCA 59.620 57.895 0.00 0.00 0.00 4.75
1203 1380 2.847234 TTCAGGTCACCGGTGGCT 60.847 61.111 36.07 20.67 35.13 4.75
1227 1404 3.376935 CTGCTTGCCGAGGTCCGAT 62.377 63.158 0.00 0.00 41.76 4.18
1228 1405 2.016393 CTGCTTGCCGAGGTCCGATA 62.016 60.000 0.00 0.00 41.76 2.92
1238 1415 2.100991 GTCCGATAACCGACGCGT 59.899 61.111 13.85 13.85 41.76 6.01
1295 1472 3.905678 CGCGCGAGGAGGAAGGAT 61.906 66.667 28.94 0.00 0.00 3.24
1303 1480 2.816337 CGAGGAGGAAGGATAGGAGACC 60.816 59.091 0.00 0.00 0.00 3.85
1311 1488 1.288335 AGGATAGGAGACCGGTTCAGT 59.712 52.381 9.42 0.00 0.00 3.41
1327 1504 2.434185 GTGGCGAGGACGATGCAA 60.434 61.111 0.00 0.00 42.66 4.08
1333 1510 1.667154 CGAGGACGATGCAAGGGAGA 61.667 60.000 0.00 0.00 42.66 3.71
1423 1601 2.440599 GGCAAGGAGGAAGGCCAA 59.559 61.111 5.01 0.00 45.70 4.52
1449 1627 4.394712 CACAGGGGCGAGGGTGAC 62.395 72.222 0.00 0.00 33.16 3.67
1450 1628 4.954118 ACAGGGGCGAGGGTGACA 62.954 66.667 0.00 0.00 0.00 3.58
1451 1629 4.087892 CAGGGGCGAGGGTGACAG 62.088 72.222 0.00 0.00 0.00 3.51
1458 1636 4.767255 GAGGGTGACAGCGGCAGG 62.767 72.222 1.45 0.00 0.00 4.85
1461 1639 4.643387 GGTGACAGCGGCAGGGTT 62.643 66.667 1.45 0.00 0.00 4.11
1462 1640 2.594592 GTGACAGCGGCAGGGTTT 60.595 61.111 1.45 0.00 0.00 3.27
1463 1641 2.594303 TGACAGCGGCAGGGTTTG 60.594 61.111 1.45 0.00 0.00 2.93
1464 1642 3.365265 GACAGCGGCAGGGTTTGG 61.365 66.667 1.45 0.00 0.00 3.28
1471 1649 4.299796 GCAGGGTTTGGCAGGGGA 62.300 66.667 0.00 0.00 0.00 4.81
1472 1650 2.283173 CAGGGTTTGGCAGGGGAC 60.283 66.667 0.00 0.00 0.00 4.46
1473 1651 2.452491 AGGGTTTGGCAGGGGACT 60.452 61.111 0.00 0.00 46.44 3.85
1474 1652 1.151677 AGGGTTTGGCAGGGGACTA 60.152 57.895 0.00 0.00 40.21 2.59
1475 1653 1.208165 AGGGTTTGGCAGGGGACTAG 61.208 60.000 0.00 0.00 40.21 2.57
1476 1654 1.205460 GGGTTTGGCAGGGGACTAGA 61.205 60.000 0.00 0.00 40.21 2.43
1477 1655 0.035343 GGTTTGGCAGGGGACTAGAC 60.035 60.000 0.00 0.00 40.21 2.59
1478 1656 0.391263 GTTTGGCAGGGGACTAGACG 60.391 60.000 0.00 0.00 40.21 4.18
1479 1657 1.550130 TTTGGCAGGGGACTAGACGG 61.550 60.000 0.00 0.00 40.21 4.79
1480 1658 2.043248 GGCAGGGGACTAGACGGA 60.043 66.667 0.00 0.00 40.21 4.69
1481 1659 2.128507 GGCAGGGGACTAGACGGAG 61.129 68.421 0.00 0.00 40.21 4.63
1482 1660 2.128507 GCAGGGGACTAGACGGAGG 61.129 68.421 0.00 0.00 40.21 4.30
1483 1661 1.455959 CAGGGGACTAGACGGAGGG 60.456 68.421 0.00 0.00 40.21 4.30
1484 1662 1.621822 AGGGGACTAGACGGAGGGA 60.622 63.158 0.00 0.00 40.61 4.20
1485 1663 1.152715 GGGGACTAGACGGAGGGAG 60.153 68.421 0.00 0.00 0.00 4.30
1486 1664 1.152715 GGGACTAGACGGAGGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
1487 1665 1.829096 GGACTAGACGGAGGGAGGC 60.829 68.421 0.00 0.00 0.00 4.70
1488 1666 1.227946 GACTAGACGGAGGGAGGCT 59.772 63.158 0.00 0.00 0.00 4.58
1489 1667 1.076632 ACTAGACGGAGGGAGGCTG 60.077 63.158 0.00 0.00 0.00 4.85
1490 1668 1.830408 CTAGACGGAGGGAGGCTGG 60.830 68.421 0.00 0.00 0.00 4.85
1491 1669 3.375443 TAGACGGAGGGAGGCTGGG 62.375 68.421 0.00 0.00 0.00 4.45
1495 1673 3.883549 GGAGGGAGGCTGGGCATC 61.884 72.222 0.00 0.00 38.72 3.91
1500 1678 2.921435 GAGGCTGGGCATCCATGA 59.079 61.111 0.00 0.00 43.11 3.07
1501 1679 1.228184 GAGGCTGGGCATCCATGAG 60.228 63.158 0.00 0.00 43.11 2.90
1502 1680 2.910994 GGCTGGGCATCCATGAGC 60.911 66.667 0.00 0.00 43.11 4.26
1503 1681 2.195139 GCTGGGCATCCATGAGCT 59.805 61.111 0.00 0.00 43.11 4.09
1504 1682 1.897615 GCTGGGCATCCATGAGCTC 60.898 63.158 6.82 6.82 43.11 4.09
1505 1683 1.597302 CTGGGCATCCATGAGCTCG 60.597 63.158 9.64 0.00 43.11 5.03
1506 1684 2.281345 GGGCATCCATGAGCTCGG 60.281 66.667 9.64 5.19 0.00 4.63
1507 1685 2.281345 GGCATCCATGAGCTCGGG 60.281 66.667 16.13 16.13 0.00 5.14
1508 1686 2.976903 GCATCCATGAGCTCGGGC 60.977 66.667 17.16 0.00 39.06 6.13
1509 1687 2.507452 CATCCATGAGCTCGGGCA 59.493 61.111 11.40 8.52 41.70 5.36
1510 1688 1.597302 CATCCATGAGCTCGGGCAG 60.597 63.158 11.40 9.48 41.70 4.85
1511 1689 2.815945 ATCCATGAGCTCGGGCAGG 61.816 63.158 11.40 5.81 41.70 4.85
1512 1690 3.473647 CCATGAGCTCGGGCAGGA 61.474 66.667 11.40 0.00 41.70 3.86
1513 1691 2.108566 CATGAGCTCGGGCAGGAG 59.891 66.667 11.40 0.00 41.70 3.69
1514 1692 2.042537 ATGAGCTCGGGCAGGAGA 60.043 61.111 11.40 0.00 41.70 3.71
1515 1693 1.687146 ATGAGCTCGGGCAGGAGAA 60.687 57.895 11.40 0.00 41.70 2.87
1516 1694 1.684386 ATGAGCTCGGGCAGGAGAAG 61.684 60.000 11.40 0.00 41.70 2.85
1517 1695 2.038007 AGCTCGGGCAGGAGAAGA 59.962 61.111 11.40 0.00 41.70 2.87
1518 1696 1.608717 GAGCTCGGGCAGGAGAAGAA 61.609 60.000 11.40 0.00 41.70 2.52
1519 1697 1.153469 GCTCGGGCAGGAGAAGAAG 60.153 63.158 0.00 0.00 36.08 2.85
1520 1698 1.519719 CTCGGGCAGGAGAAGAAGG 59.480 63.158 0.00 0.00 36.08 3.46
1521 1699 1.965754 CTCGGGCAGGAGAAGAAGGG 61.966 65.000 0.00 0.00 36.08 3.95
1522 1700 2.273776 GGGCAGGAGAAGAAGGGC 59.726 66.667 0.00 0.00 0.00 5.19
1523 1701 2.273776 GGCAGGAGAAGAAGGGCC 59.726 66.667 0.00 0.00 0.00 5.80
1524 1702 2.124942 GCAGGAGAAGAAGGGCCG 60.125 66.667 0.00 0.00 0.00 6.13
1525 1703 2.586792 CAGGAGAAGAAGGGCCGG 59.413 66.667 0.00 0.00 0.00 6.13
1526 1704 2.689034 AGGAGAAGAAGGGCCGGG 60.689 66.667 2.18 0.00 0.00 5.73
1527 1705 3.798511 GGAGAAGAAGGGCCGGGG 61.799 72.222 2.18 0.00 0.00 5.73
1528 1706 2.687566 GAGAAGAAGGGCCGGGGA 60.688 66.667 2.18 0.00 0.00 4.81
1529 1707 2.689034 AGAAGAAGGGCCGGGGAG 60.689 66.667 2.18 0.00 0.00 4.30
1530 1708 3.798511 GAAGAAGGGCCGGGGAGG 61.799 72.222 2.18 0.00 44.97 4.30
1531 1709 4.677151 AAGAAGGGCCGGGGAGGT 62.677 66.667 2.18 0.00 43.70 3.85
1543 1721 4.394712 GGAGGTCCTGCGGTGGTG 62.395 72.222 0.00 0.00 0.00 4.17
1559 1737 4.019312 TGCTGCTGCACCGGATGA 62.019 61.111 14.93 0.00 45.31 2.92
1560 1738 3.503363 GCTGCTGCACCGGATGAC 61.503 66.667 9.46 0.17 39.41 3.06
1561 1739 3.190849 CTGCTGCACCGGATGACG 61.191 66.667 9.46 0.00 43.80 4.35
1575 1753 4.133856 GGATGACGACAACAAAGTTCTG 57.866 45.455 0.00 0.00 0.00 3.02
1576 1754 3.560068 GGATGACGACAACAAAGTTCTGT 59.440 43.478 0.00 0.00 0.00 3.41
1577 1755 4.518217 GATGACGACAACAAAGTTCTGTG 58.482 43.478 0.00 0.00 0.00 3.66
1578 1756 3.591023 TGACGACAACAAAGTTCTGTGA 58.409 40.909 0.00 0.00 0.00 3.58
1579 1757 3.369756 TGACGACAACAAAGTTCTGTGAC 59.630 43.478 0.00 0.00 0.00 3.67
1580 1758 2.347452 ACGACAACAAAGTTCTGTGACG 59.653 45.455 0.00 0.00 0.00 4.35
1581 1759 2.285602 CGACAACAAAGTTCTGTGACGG 60.286 50.000 0.00 0.00 0.00 4.79
1582 1760 1.400494 ACAACAAAGTTCTGTGACGGC 59.600 47.619 0.00 0.00 0.00 5.68
1583 1761 1.400142 CAACAAAGTTCTGTGACGGCA 59.600 47.619 0.00 0.00 0.00 5.69
1584 1762 1.014352 ACAAAGTTCTGTGACGGCAC 58.986 50.000 16.50 16.50 45.35 5.01
1597 1775 2.432628 GGCACGTGAGGAACCGAG 60.433 66.667 22.23 0.00 0.00 4.63
1598 1776 2.338984 GCACGTGAGGAACCGAGT 59.661 61.111 22.23 0.00 0.00 4.18
1599 1777 1.300697 GCACGTGAGGAACCGAGTT 60.301 57.895 22.23 0.00 0.00 3.01
1600 1778 1.557443 GCACGTGAGGAACCGAGTTG 61.557 60.000 22.23 0.00 0.00 3.16
1601 1779 0.031585 CACGTGAGGAACCGAGTTGA 59.968 55.000 10.90 0.00 0.00 3.18
1602 1780 0.748450 ACGTGAGGAACCGAGTTGAA 59.252 50.000 0.00 0.00 0.00 2.69
1603 1781 1.343465 ACGTGAGGAACCGAGTTGAAT 59.657 47.619 0.00 0.00 0.00 2.57
1604 1782 1.993370 CGTGAGGAACCGAGTTGAATC 59.007 52.381 0.00 0.00 0.00 2.52
1605 1783 2.609491 CGTGAGGAACCGAGTTGAATCA 60.609 50.000 0.00 0.00 0.00 2.57
1606 1784 2.996621 GTGAGGAACCGAGTTGAATCAG 59.003 50.000 0.00 0.00 0.00 2.90
1607 1785 2.003301 GAGGAACCGAGTTGAATCAGC 58.997 52.381 0.00 0.00 0.00 4.26
1608 1786 1.625818 AGGAACCGAGTTGAATCAGCT 59.374 47.619 0.00 0.00 0.00 4.24
1609 1787 1.734465 GGAACCGAGTTGAATCAGCTG 59.266 52.381 7.63 7.63 0.00 4.24
1610 1788 1.734465 GAACCGAGTTGAATCAGCTGG 59.266 52.381 15.13 8.85 0.00 4.85
1611 1789 0.976641 ACCGAGTTGAATCAGCTGGA 59.023 50.000 15.13 0.57 0.00 3.86
1612 1790 1.066573 ACCGAGTTGAATCAGCTGGAG 60.067 52.381 15.13 8.49 0.00 3.86
1613 1791 1.066573 CCGAGTTGAATCAGCTGGAGT 60.067 52.381 15.13 0.00 0.00 3.85
1614 1792 2.613977 CCGAGTTGAATCAGCTGGAGTT 60.614 50.000 15.13 6.75 0.00 3.01
1615 1793 2.414481 CGAGTTGAATCAGCTGGAGTTG 59.586 50.000 15.13 0.00 0.00 3.16
1616 1794 3.668447 GAGTTGAATCAGCTGGAGTTGA 58.332 45.455 15.13 0.00 39.53 3.18
1617 1795 3.672808 AGTTGAATCAGCTGGAGTTGAG 58.327 45.455 15.13 0.00 38.62 3.02
1618 1796 2.746362 GTTGAATCAGCTGGAGTTGAGG 59.254 50.000 15.13 0.00 38.62 3.86
1619 1797 1.339438 TGAATCAGCTGGAGTTGAGGC 60.339 52.381 15.13 0.00 38.62 4.70
1620 1798 0.694771 AATCAGCTGGAGTTGAGGCA 59.305 50.000 15.13 0.00 38.62 4.75
1621 1799 0.252479 ATCAGCTGGAGTTGAGGCAG 59.748 55.000 15.13 0.00 38.62 4.85
1622 1800 0.833409 TCAGCTGGAGTTGAGGCAGA 60.833 55.000 15.13 0.00 31.61 4.26
1623 1801 0.391395 CAGCTGGAGTTGAGGCAGAG 60.391 60.000 5.57 0.00 0.00 3.35
1624 1802 1.078567 GCTGGAGTTGAGGCAGAGG 60.079 63.158 0.00 0.00 0.00 3.69
1625 1803 1.548357 GCTGGAGTTGAGGCAGAGGA 61.548 60.000 0.00 0.00 0.00 3.71
1626 1804 0.536260 CTGGAGTTGAGGCAGAGGAG 59.464 60.000 0.00 0.00 0.00 3.69
1627 1805 1.220477 GGAGTTGAGGCAGAGGAGC 59.780 63.158 0.00 0.00 0.00 4.70
1628 1806 1.548357 GGAGTTGAGGCAGAGGAGCA 61.548 60.000 0.00 0.00 35.83 4.26
1629 1807 0.108233 GAGTTGAGGCAGAGGAGCAG 60.108 60.000 0.00 0.00 35.83 4.24
1630 1808 0.835543 AGTTGAGGCAGAGGAGCAGT 60.836 55.000 0.00 0.00 35.83 4.40
1631 1809 0.673022 GTTGAGGCAGAGGAGCAGTG 60.673 60.000 0.00 0.00 35.83 3.66
1632 1810 1.834856 TTGAGGCAGAGGAGCAGTGG 61.835 60.000 0.00 0.00 35.83 4.00
1633 1811 3.007920 AGGCAGAGGAGCAGTGGG 61.008 66.667 0.00 0.00 35.83 4.61
1634 1812 4.106925 GGCAGAGGAGCAGTGGGG 62.107 72.222 0.00 0.00 35.83 4.96
1635 1813 4.792804 GCAGAGGAGCAGTGGGGC 62.793 72.222 0.00 0.00 0.00 5.80
1636 1814 4.463879 CAGAGGAGCAGTGGGGCG 62.464 72.222 0.00 0.00 39.27 6.13
1637 1815 4.704103 AGAGGAGCAGTGGGGCGA 62.704 66.667 0.00 0.00 39.27 5.54
1638 1816 3.706373 GAGGAGCAGTGGGGCGAA 61.706 66.667 0.00 0.00 39.27 4.70
1639 1817 3.672295 GAGGAGCAGTGGGGCGAAG 62.672 68.421 0.00 0.00 39.27 3.79
1640 1818 4.785453 GGAGCAGTGGGGCGAAGG 62.785 72.222 0.00 0.00 39.27 3.46
1641 1819 3.706373 GAGCAGTGGGGCGAAGGA 61.706 66.667 0.00 0.00 39.27 3.36
1642 1820 3.672295 GAGCAGTGGGGCGAAGGAG 62.672 68.421 0.00 0.00 39.27 3.69
1643 1821 3.706373 GCAGTGGGGCGAAGGAGA 61.706 66.667 0.00 0.00 0.00 3.71
1644 1822 2.581354 CAGTGGGGCGAAGGAGAG 59.419 66.667 0.00 0.00 0.00 3.20
1645 1823 2.685380 AGTGGGGCGAAGGAGAGG 60.685 66.667 0.00 0.00 0.00 3.69
1646 1824 4.475135 GTGGGGCGAAGGAGAGGC 62.475 72.222 0.00 0.00 0.00 4.70
1652 1830 4.521062 CGAAGGAGAGGCCGCTGG 62.521 72.222 16.07 0.00 43.43 4.85
1653 1831 3.394836 GAAGGAGAGGCCGCTGGT 61.395 66.667 16.07 0.00 43.43 4.00
1654 1832 3.672295 GAAGGAGAGGCCGCTGGTG 62.672 68.421 16.07 0.00 43.43 4.17
1666 1844 4.351054 CTGGTGGGGGTCTGGCAC 62.351 72.222 0.00 0.00 0.00 5.01
1667 1845 4.918360 TGGTGGGGGTCTGGCACT 62.918 66.667 0.00 0.00 0.00 4.40
1679 1857 4.792804 GGCACTGCAGAGGGAGGC 62.793 72.222 23.35 12.54 36.68 4.70
1681 1859 4.463879 CACTGCAGAGGGAGGCGG 62.464 72.222 23.35 0.00 42.11 6.13
1683 1861 4.463879 CTGCAGAGGGAGGCGGTG 62.464 72.222 8.42 0.00 0.00 4.94
1686 1864 4.087892 CAGAGGGAGGCGGTGGTG 62.088 72.222 0.00 0.00 0.00 4.17
1697 1875 4.778143 GGTGGTGGCGCTAGGTGG 62.778 72.222 7.64 0.00 0.00 4.61
1698 1876 3.702048 GTGGTGGCGCTAGGTGGA 61.702 66.667 7.64 0.00 0.00 4.02
1699 1877 2.925706 TGGTGGCGCTAGGTGGAA 60.926 61.111 7.64 0.00 0.00 3.53
1700 1878 2.125106 GGTGGCGCTAGGTGGAAG 60.125 66.667 7.64 0.00 0.00 3.46
1701 1879 2.125106 GTGGCGCTAGGTGGAAGG 60.125 66.667 7.64 0.00 0.00 3.46
1702 1880 2.284331 TGGCGCTAGGTGGAAGGA 60.284 61.111 7.64 0.00 0.00 3.36
1703 1881 2.359169 TGGCGCTAGGTGGAAGGAG 61.359 63.158 7.64 0.00 0.00 3.69
1704 1882 2.501610 GCGCTAGGTGGAAGGAGG 59.498 66.667 0.00 0.00 0.00 4.30
1705 1883 3.095347 GCGCTAGGTGGAAGGAGGG 62.095 68.421 0.00 0.00 0.00 4.30
1706 1884 2.435693 CGCTAGGTGGAAGGAGGGG 61.436 68.421 0.00 0.00 0.00 4.79
1707 1885 1.003051 GCTAGGTGGAAGGAGGGGA 59.997 63.158 0.00 0.00 0.00 4.81
1708 1886 0.620700 GCTAGGTGGAAGGAGGGGAA 60.621 60.000 0.00 0.00 0.00 3.97
1709 1887 1.501582 CTAGGTGGAAGGAGGGGAAG 58.498 60.000 0.00 0.00 0.00 3.46
1710 1888 0.044244 TAGGTGGAAGGAGGGGAAGG 59.956 60.000 0.00 0.00 0.00 3.46
1711 1889 2.309504 GGTGGAAGGAGGGGAAGGG 61.310 68.421 0.00 0.00 0.00 3.95
1712 1890 2.127297 TGGAAGGAGGGGAAGGGG 59.873 66.667 0.00 0.00 0.00 4.79
1713 1891 2.459710 GGAAGGAGGGGAAGGGGA 59.540 66.667 0.00 0.00 0.00 4.81
1714 1892 1.006227 GGAAGGAGGGGAAGGGGAT 59.994 63.158 0.00 0.00 0.00 3.85
1715 1893 0.271005 GGAAGGAGGGGAAGGGGATA 59.729 60.000 0.00 0.00 0.00 2.59
1716 1894 1.346151 GGAAGGAGGGGAAGGGGATAA 60.346 57.143 0.00 0.00 0.00 1.75
1717 1895 1.775459 GAAGGAGGGGAAGGGGATAAC 59.225 57.143 0.00 0.00 0.00 1.89
1718 1896 0.400093 AGGAGGGGAAGGGGATAACG 60.400 60.000 0.00 0.00 0.00 3.18
1719 1897 0.399519 GGAGGGGAAGGGGATAACGA 60.400 60.000 0.00 0.00 0.00 3.85
1720 1898 1.049402 GAGGGGAAGGGGATAACGAG 58.951 60.000 0.00 0.00 0.00 4.18
1721 1899 0.400093 AGGGGAAGGGGATAACGAGG 60.400 60.000 0.00 0.00 0.00 4.63
1722 1900 0.399519 GGGGAAGGGGATAACGAGGA 60.400 60.000 0.00 0.00 0.00 3.71
1723 1901 1.049402 GGGAAGGGGATAACGAGGAG 58.951 60.000 0.00 0.00 0.00 3.69
1724 1902 1.412649 GGGAAGGGGATAACGAGGAGA 60.413 57.143 0.00 0.00 0.00 3.71
1725 1903 2.610873 GGAAGGGGATAACGAGGAGAT 58.389 52.381 0.00 0.00 0.00 2.75
1726 1904 2.563620 GGAAGGGGATAACGAGGAGATC 59.436 54.545 0.00 0.00 0.00 2.75
1735 1913 2.642700 GAGGAGATCGAGCGAGGC 59.357 66.667 0.00 0.00 0.00 4.70
1736 1914 2.124109 AGGAGATCGAGCGAGGCA 60.124 61.111 0.00 0.00 0.00 4.75
1737 1915 2.128853 GAGGAGATCGAGCGAGGCAG 62.129 65.000 0.00 0.00 0.00 4.85
1738 1916 2.354539 GAGATCGAGCGAGGCAGC 60.355 66.667 0.00 0.00 37.41 5.25
1739 1917 3.131196 GAGATCGAGCGAGGCAGCA 62.131 63.158 7.67 0.00 40.15 4.41
1740 1918 2.202797 GATCGAGCGAGGCAGCAA 60.203 61.111 7.67 0.00 40.15 3.91
1741 1919 2.510238 ATCGAGCGAGGCAGCAAC 60.510 61.111 7.67 1.06 40.15 4.17
1749 1927 3.989698 GAGGCAGCAACGCTCGCTA 62.990 63.158 0.00 0.00 37.72 4.26
1750 1928 2.892425 GGCAGCAACGCTCGCTAT 60.892 61.111 0.00 0.00 37.72 2.97
1751 1929 2.623173 GCAGCAACGCTCGCTATC 59.377 61.111 0.00 0.00 37.72 2.08
1752 1930 1.880340 GCAGCAACGCTCGCTATCT 60.880 57.895 0.00 0.00 37.72 1.98
1753 1931 1.816214 GCAGCAACGCTCGCTATCTC 61.816 60.000 0.00 0.00 37.72 2.75
1754 1932 1.066587 AGCAACGCTCGCTATCTCC 59.933 57.895 0.00 0.00 38.15 3.71
1755 1933 1.066587 GCAACGCTCGCTATCTCCT 59.933 57.895 0.00 0.00 0.00 3.69
1756 1934 1.211818 GCAACGCTCGCTATCTCCTG 61.212 60.000 0.00 0.00 0.00 3.86
1757 1935 0.596083 CAACGCTCGCTATCTCCTGG 60.596 60.000 0.00 0.00 0.00 4.45
1758 1936 2.049618 CGCTCGCTATCTCCTGGC 60.050 66.667 0.00 0.00 0.00 4.85
1776 1954 3.675563 GGCGCGAGGGAGATCGAT 61.676 66.667 12.10 0.00 45.56 3.59
1777 1955 2.429907 GCGCGAGGGAGATCGATG 60.430 66.667 12.10 0.00 45.56 3.84
1778 1956 2.256764 CGCGAGGGAGATCGATGG 59.743 66.667 0.54 0.00 45.56 3.51
1779 1957 2.653702 GCGAGGGAGATCGATGGG 59.346 66.667 0.54 0.00 45.56 4.00
1780 1958 1.903890 GCGAGGGAGATCGATGGGA 60.904 63.158 0.54 0.00 45.56 4.37
1781 1959 1.872197 GCGAGGGAGATCGATGGGAG 61.872 65.000 0.54 0.00 45.56 4.30
1782 1960 0.250945 CGAGGGAGATCGATGGGAGA 60.251 60.000 0.54 0.00 45.56 3.71
1783 1961 1.253100 GAGGGAGATCGATGGGAGAC 58.747 60.000 0.54 0.00 0.00 3.36
1784 1962 0.538516 AGGGAGATCGATGGGAGACG 60.539 60.000 0.54 0.00 0.00 4.18
1785 1963 0.537600 GGGAGATCGATGGGAGACGA 60.538 60.000 0.54 0.00 42.49 4.20
1786 1964 0.878416 GGAGATCGATGGGAGACGAG 59.122 60.000 0.54 0.00 41.63 4.18
1787 1965 0.239879 GAGATCGATGGGAGACGAGC 59.760 60.000 0.54 0.00 43.61 5.03
1791 1969 3.829048 GATGGGAGACGAGCGAGA 58.171 61.111 0.00 0.00 0.00 4.04
1792 1970 1.652012 GATGGGAGACGAGCGAGAG 59.348 63.158 0.00 0.00 0.00 3.20
1793 1971 0.816018 GATGGGAGACGAGCGAGAGA 60.816 60.000 0.00 0.00 0.00 3.10
1794 1972 0.817634 ATGGGAGACGAGCGAGAGAG 60.818 60.000 0.00 0.00 0.00 3.20
1795 1973 2.184167 GGGAGACGAGCGAGAGAGG 61.184 68.421 0.00 0.00 0.00 3.69
1796 1974 1.153329 GGAGACGAGCGAGAGAGGA 60.153 63.158 0.00 0.00 0.00 3.71
1797 1975 1.157870 GGAGACGAGCGAGAGAGGAG 61.158 65.000 0.00 0.00 0.00 3.69
1798 1976 1.153249 AGACGAGCGAGAGAGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
1799 1977 2.124487 ACGAGCGAGAGAGGAGGG 60.124 66.667 0.00 0.00 0.00 4.30
1800 1978 2.124487 CGAGCGAGAGAGGAGGGT 60.124 66.667 0.00 0.00 0.00 4.34
1801 1979 2.184167 CGAGCGAGAGAGGAGGGTC 61.184 68.421 0.00 0.00 0.00 4.46
1802 1980 2.124487 AGCGAGAGAGGAGGGTCG 60.124 66.667 0.00 0.00 35.51 4.79
1803 1981 2.124653 GCGAGAGAGGAGGGTCGA 60.125 66.667 0.00 0.00 34.28 4.20
1804 1982 2.184167 GCGAGAGAGGAGGGTCGAG 61.184 68.421 0.00 0.00 34.28 4.04
1805 1983 2.184167 CGAGAGAGGAGGGTCGAGC 61.184 68.421 5.93 5.93 34.28 5.03
1806 1984 1.077357 GAGAGAGGAGGGTCGAGCA 60.077 63.158 17.59 0.00 0.00 4.26
1807 1985 1.077068 AGAGAGGAGGGTCGAGCAG 60.077 63.158 17.59 0.00 0.00 4.24
1808 1986 2.043450 AGAGGAGGGTCGAGCAGG 60.043 66.667 17.59 0.00 0.00 4.85
1809 1987 2.043852 GAGGAGGGTCGAGCAGGA 60.044 66.667 17.59 0.00 0.00 3.86
1810 1988 2.043450 AGGAGGGTCGAGCAGGAG 60.043 66.667 17.59 0.00 0.00 3.69
1811 1989 3.151022 GGAGGGTCGAGCAGGAGG 61.151 72.222 17.59 0.00 0.00 4.30
1812 1990 3.844090 GAGGGTCGAGCAGGAGGC 61.844 72.222 17.59 0.00 45.30 4.70
1835 2013 1.074926 GGCAGAGGGAGAGATGGGA 60.075 63.158 0.00 0.00 0.00 4.37
1837 2015 1.433121 GCAGAGGGAGAGATGGGATT 58.567 55.000 0.00 0.00 0.00 3.01
1845 2023 1.423161 GAGAGATGGGATTGGGGAAGG 59.577 57.143 0.00 0.00 0.00 3.46
1849 2027 0.048749 ATGGGATTGGGGAAGGGGTA 59.951 55.000 0.00 0.00 0.00 3.69
1869 2047 1.442148 GCTAGGGTTAGAGCCGGTG 59.558 63.158 1.90 0.00 41.56 4.94
1888 2066 2.035626 GGCACTGGCTGGGCTTTA 59.964 61.111 18.37 0.00 46.25 1.85
1893 2071 0.329596 ACTGGCTGGGCTTTAGGAAG 59.670 55.000 0.00 0.00 35.92 3.46
1947 2126 2.280797 GCTGGACACAAGTGGCGA 60.281 61.111 5.08 0.00 40.25 5.54
2006 2198 9.765795 TTAACAGAGAACTAGAAGAAAGGAAAG 57.234 33.333 0.00 0.00 0.00 2.62
2011 2203 8.364894 AGAGAACTAGAAGAAAGGAAAGAAGAC 58.635 37.037 0.00 0.00 0.00 3.01
2099 2297 8.758829 AGTTTGAACCAGGAAAAATAGAAGTTT 58.241 29.630 0.00 0.00 0.00 2.66
2108 2307 8.866956 CAGGAAAAATAGAAGTTTGCATGATTC 58.133 33.333 0.00 0.00 0.00 2.52
2109 2308 8.037166 AGGAAAAATAGAAGTTTGCATGATTCC 58.963 33.333 0.00 0.00 0.00 3.01
2120 2319 8.538409 AGTTTGCATGATTCCAAGATTTAAAC 57.462 30.769 0.00 0.00 0.00 2.01
2129 2328 8.289618 TGATTCCAAGATTTAAACTCAAACTCG 58.710 33.333 0.00 0.00 0.00 4.18
2168 2369 6.705863 AATGATTTGAATAGGAAGTGAGGC 57.294 37.500 0.00 0.00 0.00 4.70
2192 2394 2.626266 GGGAAGGTCCAAAAATGTTCGT 59.374 45.455 0.00 0.00 38.64 3.85
2286 2492 4.840716 AGGCATTGGGATAATTTGCAAA 57.159 36.364 15.44 15.44 35.04 3.68
2305 2512 4.562394 GCAAATGTGTTATGGTGAATTCCG 59.438 41.667 2.27 0.00 0.00 4.30
2315 2522 8.673711 TGTTATGGTGAATTCCGAATTAAAGAG 58.326 33.333 6.34 0.00 0.00 2.85
2416 2640 9.625747 TCAACCATCTATGCAATTTATTAGTCA 57.374 29.630 0.00 0.00 0.00 3.41
2487 2724 6.073440 GCAAAGATGAATGCAACAGACAAAAT 60.073 34.615 0.00 0.00 42.12 1.82
2524 2761 1.885887 CTCGGAAAACATGGAAGGCAA 59.114 47.619 0.00 0.00 0.00 4.52
2525 2762 1.611491 TCGGAAAACATGGAAGGCAAC 59.389 47.619 0.00 0.00 0.00 4.17
2526 2763 1.665735 CGGAAAACATGGAAGGCAACG 60.666 52.381 0.00 0.00 46.39 4.10
2530 2767 4.306600 GAAAACATGGAAGGCAACGAAAT 58.693 39.130 0.00 0.00 46.39 2.17
2531 2768 4.335400 AAACATGGAAGGCAACGAAATT 57.665 36.364 0.00 0.00 46.39 1.82
2533 2770 4.434713 ACATGGAAGGCAACGAAATTAC 57.565 40.909 0.00 0.00 46.39 1.89
2534 2771 4.079253 ACATGGAAGGCAACGAAATTACT 58.921 39.130 0.00 0.00 46.39 2.24
2535 2772 5.250200 ACATGGAAGGCAACGAAATTACTA 58.750 37.500 0.00 0.00 46.39 1.82
2540 2777 5.064834 GGAAGGCAACGAAATTACTAGAAGG 59.935 44.000 0.00 0.00 46.39 3.46
2582 2819 1.476110 GGCGTTACATGGCCCAAGATA 60.476 52.381 0.00 0.00 43.64 1.98
2623 2860 0.981183 TTCGTGCCTCCAACCTACAT 59.019 50.000 0.00 0.00 0.00 2.29
2686 2923 2.478031 CCAAGTCCATCGACGAGTACTG 60.478 54.545 0.00 0.00 44.28 2.74
2700 2937 3.194062 GAGTACTGCAAGGAGATGAAGC 58.806 50.000 0.00 0.00 39.30 3.86
2766 3003 4.019174 GTTCCACTTCATGATGGGATTGT 58.981 43.478 14.11 0.00 36.56 2.71
2785 3022 4.801330 TGTACAACGACATCTCCAAGAT 57.199 40.909 0.00 0.00 34.74 2.40
2804 3041 7.346698 TCCAAGATGATCTTCCTCAAGAACTAT 59.653 37.037 4.39 0.00 42.14 2.12
2846 3083 2.125350 GGTGCTCTCAAGGCGGAG 60.125 66.667 3.22 3.22 36.21 4.63
2891 3128 0.111253 CTCCACCCCAAGCTCACTTT 59.889 55.000 0.00 0.00 32.29 2.66
2903 3140 1.202245 GCTCACTTTGCAACGACCAAA 60.202 47.619 10.27 0.00 0.00 3.28
2938 3175 1.417890 GCATGAGGCTAGTACCACCAT 59.582 52.381 0.00 0.00 40.25 3.55
2997 3234 1.971357 AGTTCGACTTCACCACCATCT 59.029 47.619 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.316071 TGCCATGTTTATGCTTGTTGG 57.684 42.857 0.00 0.00 32.79 3.77
29 30 3.133183 TGCATCATGCCATGTTTATGCTT 59.867 39.130 22.66 0.00 44.23 3.91
31 32 2.798283 GTGCATCATGCCATGTTTATGC 59.202 45.455 18.09 18.09 44.23 3.14
73 76 3.558746 CCATGCCATGCCTTTTTAAACCA 60.559 43.478 0.00 0.00 0.00 3.67
96 104 7.440523 TTGTAGTTTTGGTTGTTGCATTTTT 57.559 28.000 0.00 0.00 0.00 1.94
172 186 6.997239 AACCGGGAATGAACTAAATAAGTC 57.003 37.500 6.32 0.00 37.50 3.01
220 234 3.427233 GCTTCACCTCTTGCAATGCTAAG 60.427 47.826 6.82 8.75 0.00 2.18
228 243 1.985473 ATTGTGCTTCACCTCTTGCA 58.015 45.000 0.00 0.00 32.73 4.08
272 289 2.035626 ATGTTTCCGGCCCCACTG 59.964 61.111 0.00 0.00 0.00 3.66
439 469 2.127271 TCCGCCATGATGACAAATGT 57.873 45.000 0.00 0.00 0.00 2.71
462 492 3.444818 TTGCCGTGGCTCCCCTTTT 62.445 57.895 12.84 0.00 42.51 2.27
470 501 2.746277 GGATTCGTTGCCGTGGCT 60.746 61.111 12.84 0.00 42.51 4.75
514 549 4.651503 ACATCTCAATCGAGTACCAGGAAT 59.348 41.667 0.00 0.00 40.44 3.01
519 554 4.017126 ACTGACATCTCAATCGAGTACCA 58.983 43.478 0.00 0.00 40.44 3.25
521 556 3.794028 GCACTGACATCTCAATCGAGTAC 59.206 47.826 0.00 0.00 40.44 2.73
522 557 3.443681 TGCACTGACATCTCAATCGAGTA 59.556 43.478 0.00 0.00 40.44 2.59
539 574 4.973168 TCTCATACTTGTTTCCTTGCACT 58.027 39.130 0.00 0.00 0.00 4.40
731 775 6.968904 CGTTCTGAATATGCATGCTTTAAAGT 59.031 34.615 20.33 0.00 0.00 2.66
818 993 3.560278 CGGCCCGAACATGTACGC 61.560 66.667 0.00 0.00 0.00 4.42
837 1012 4.282703 ACCTTCGAAACATGTACCACTACT 59.717 41.667 0.00 0.00 0.00 2.57
849 1024 2.605818 CGTCAAGTTCACCTTCGAAACA 59.394 45.455 0.00 0.00 0.00 2.83
850 1025 2.861935 TCGTCAAGTTCACCTTCGAAAC 59.138 45.455 0.00 0.00 29.50 2.78
870 1045 1.468914 GCCTCCAGAAACAACGGATTC 59.531 52.381 0.00 0.00 0.00 2.52
884 1059 3.305720 AGTTCCACTATTATCGCCTCCA 58.694 45.455 0.00 0.00 0.00 3.86
893 1068 4.214545 CACAAACGCCAAGTTCCACTATTA 59.785 41.667 0.00 0.00 43.37 0.98
894 1069 3.004315 CACAAACGCCAAGTTCCACTATT 59.996 43.478 0.00 0.00 43.37 1.73
895 1070 2.552315 CACAAACGCCAAGTTCCACTAT 59.448 45.455 0.00 0.00 43.37 2.12
933 1108 2.166870 GGACCATGTACATGTACCGTCA 59.833 50.000 29.68 17.84 37.11 4.35
941 1116 2.672874 CGACTTGTGGACCATGTACATG 59.327 50.000 26.02 26.02 38.51 3.21
988 1163 0.466189 CCCTTCATGCCGGCAATACT 60.466 55.000 36.33 15.14 0.00 2.12
991 1166 1.932156 TACCCCTTCATGCCGGCAAT 61.932 55.000 36.33 19.35 0.00 3.56
1019 1194 1.452108 CAAGTCCATCGAAGGCCCC 60.452 63.158 0.65 0.00 0.00 5.80
1052 1228 3.043713 CAACGAGCAGCGCCTTCA 61.044 61.111 2.29 0.00 46.04 3.02
1096 1273 0.389166 CTGACGAGTTCCTGCCTGAC 60.389 60.000 0.00 0.00 0.00 3.51
1099 1276 2.948720 GCCTGACGAGTTCCTGCCT 61.949 63.158 0.00 0.00 0.00 4.75
1123 1300 1.379176 GCCTTTTCTCCTGCCTCCC 60.379 63.158 0.00 0.00 0.00 4.30
1130 1307 1.679898 CCTCCGTGCCTTTTCTCCT 59.320 57.895 0.00 0.00 0.00 3.69
1178 1355 1.524863 CGGTGACCTGAAGGACGAGT 61.525 60.000 2.62 0.00 38.94 4.18
1203 1380 4.020617 CTCGGCAAGCAGGACCCA 62.021 66.667 0.00 0.00 0.00 4.51
1295 1472 1.255667 GCCACTGAACCGGTCTCCTA 61.256 60.000 8.04 0.00 0.00 2.94
1303 1480 2.432628 GTCCTCGCCACTGAACCG 60.433 66.667 0.00 0.00 0.00 4.44
1311 1488 2.125552 CTTGCATCGTCCTCGCCA 60.126 61.111 0.00 0.00 36.96 5.69
1385 1562 3.823330 ATGGACGCGAGGGTCGAC 61.823 66.667 15.93 7.13 43.74 4.20
1433 1611 4.954118 TGTCACCCTCGCCCCTGT 62.954 66.667 0.00 0.00 0.00 4.00
1445 1623 2.594592 AAACCCTGCCGCTGTCAC 60.595 61.111 0.00 0.00 0.00 3.67
1446 1624 2.594303 CAAACCCTGCCGCTGTCA 60.594 61.111 0.00 0.00 0.00 3.58
1454 1632 4.299796 TCCCCTGCCAAACCCTGC 62.300 66.667 0.00 0.00 0.00 4.85
1455 1633 1.497309 TAGTCCCCTGCCAAACCCTG 61.497 60.000 0.00 0.00 0.00 4.45
1456 1634 1.151677 TAGTCCCCTGCCAAACCCT 60.152 57.895 0.00 0.00 0.00 4.34
1457 1635 1.205460 TCTAGTCCCCTGCCAAACCC 61.205 60.000 0.00 0.00 0.00 4.11
1458 1636 0.035343 GTCTAGTCCCCTGCCAAACC 60.035 60.000 0.00 0.00 0.00 3.27
1459 1637 0.391263 CGTCTAGTCCCCTGCCAAAC 60.391 60.000 0.00 0.00 0.00 2.93
1460 1638 1.550130 CCGTCTAGTCCCCTGCCAAA 61.550 60.000 0.00 0.00 0.00 3.28
1461 1639 1.987855 CCGTCTAGTCCCCTGCCAA 60.988 63.158 0.00 0.00 0.00 4.52
1462 1640 2.363795 CCGTCTAGTCCCCTGCCA 60.364 66.667 0.00 0.00 0.00 4.92
1463 1641 2.043248 TCCGTCTAGTCCCCTGCC 60.043 66.667 0.00 0.00 0.00 4.85
1464 1642 2.128507 CCTCCGTCTAGTCCCCTGC 61.129 68.421 0.00 0.00 0.00 4.85
1465 1643 1.455959 CCCTCCGTCTAGTCCCCTG 60.456 68.421 0.00 0.00 0.00 4.45
1466 1644 1.621822 TCCCTCCGTCTAGTCCCCT 60.622 63.158 0.00 0.00 0.00 4.79
1467 1645 1.152715 CTCCCTCCGTCTAGTCCCC 60.153 68.421 0.00 0.00 0.00 4.81
1468 1646 1.152715 CCTCCCTCCGTCTAGTCCC 60.153 68.421 0.00 0.00 0.00 4.46
1469 1647 1.829096 GCCTCCCTCCGTCTAGTCC 60.829 68.421 0.00 0.00 0.00 3.85
1470 1648 1.104577 CAGCCTCCCTCCGTCTAGTC 61.105 65.000 0.00 0.00 0.00 2.59
1471 1649 1.076632 CAGCCTCCCTCCGTCTAGT 60.077 63.158 0.00 0.00 0.00 2.57
1472 1650 1.830408 CCAGCCTCCCTCCGTCTAG 60.830 68.421 0.00 0.00 0.00 2.43
1473 1651 2.279073 CCAGCCTCCCTCCGTCTA 59.721 66.667 0.00 0.00 0.00 2.59
1474 1652 4.787280 CCCAGCCTCCCTCCGTCT 62.787 72.222 0.00 0.00 0.00 4.18
1478 1656 3.883549 GATGCCCAGCCTCCCTCC 61.884 72.222 0.00 0.00 0.00 4.30
1479 1657 3.883549 GGATGCCCAGCCTCCCTC 61.884 72.222 0.00 0.00 37.38 4.30
1480 1658 4.765970 TGGATGCCCAGCCTCCCT 62.766 66.667 8.20 0.00 41.55 4.20
1489 1667 2.281345 CCGAGCTCATGGATGCCC 60.281 66.667 15.40 0.00 0.00 5.36
1490 1668 2.281345 CCCGAGCTCATGGATGCC 60.281 66.667 15.40 0.00 0.00 4.40
1491 1669 2.976903 GCCCGAGCTCATGGATGC 60.977 66.667 20.59 8.01 35.50 3.91
1492 1670 1.597302 CTGCCCGAGCTCATGGATG 60.597 63.158 20.59 9.61 40.80 3.51
1493 1671 2.815945 CCTGCCCGAGCTCATGGAT 61.816 63.158 20.59 0.00 40.80 3.41
1494 1672 3.473647 CCTGCCCGAGCTCATGGA 61.474 66.667 20.59 8.28 40.80 3.41
1495 1673 3.457625 CTCCTGCCCGAGCTCATGG 62.458 68.421 15.40 14.43 40.80 3.66
1496 1674 1.964608 TTCTCCTGCCCGAGCTCATG 61.965 60.000 15.40 4.73 40.80 3.07
1497 1675 1.684386 CTTCTCCTGCCCGAGCTCAT 61.684 60.000 15.40 0.00 40.80 2.90
1498 1676 2.283894 TTCTCCTGCCCGAGCTCA 60.284 61.111 15.40 0.00 40.80 4.26
1499 1677 1.608717 TTCTTCTCCTGCCCGAGCTC 61.609 60.000 2.73 2.73 40.80 4.09
1500 1678 1.610673 TTCTTCTCCTGCCCGAGCT 60.611 57.895 0.00 0.00 40.80 4.09
1501 1679 1.153469 CTTCTTCTCCTGCCCGAGC 60.153 63.158 0.00 0.00 40.48 5.03
1502 1680 1.519719 CCTTCTTCTCCTGCCCGAG 59.480 63.158 0.00 0.00 0.00 4.63
1503 1681 1.990060 CCCTTCTTCTCCTGCCCGA 60.990 63.158 0.00 0.00 0.00 5.14
1504 1682 2.586792 CCCTTCTTCTCCTGCCCG 59.413 66.667 0.00 0.00 0.00 6.13
1505 1683 2.273776 GCCCTTCTTCTCCTGCCC 59.726 66.667 0.00 0.00 0.00 5.36
1506 1684 2.273776 GGCCCTTCTTCTCCTGCC 59.726 66.667 0.00 0.00 0.00 4.85
1507 1685 2.124942 CGGCCCTTCTTCTCCTGC 60.125 66.667 0.00 0.00 0.00 4.85
1508 1686 2.586792 CCGGCCCTTCTTCTCCTG 59.413 66.667 0.00 0.00 0.00 3.86
1509 1687 2.689034 CCCGGCCCTTCTTCTCCT 60.689 66.667 0.00 0.00 0.00 3.69
1510 1688 3.798511 CCCCGGCCCTTCTTCTCC 61.799 72.222 0.00 0.00 0.00 3.71
1511 1689 2.687566 TCCCCGGCCCTTCTTCTC 60.688 66.667 0.00 0.00 0.00 2.87
1512 1690 2.689034 CTCCCCGGCCCTTCTTCT 60.689 66.667 0.00 0.00 0.00 2.85
1513 1691 3.798511 CCTCCCCGGCCCTTCTTC 61.799 72.222 0.00 0.00 0.00 2.87
1514 1692 4.677151 ACCTCCCCGGCCCTTCTT 62.677 66.667 0.00 0.00 35.61 2.52
1543 1721 3.503363 GTCATCCGGTGCAGCAGC 61.503 66.667 17.33 14.97 42.57 5.25
1544 1722 3.190849 CGTCATCCGGTGCAGCAG 61.191 66.667 17.33 4.44 0.00 4.24
1545 1723 3.690280 TCGTCATCCGGTGCAGCA 61.690 61.111 17.33 0.00 37.11 4.41
1546 1724 3.188786 GTCGTCATCCGGTGCAGC 61.189 66.667 5.64 5.64 37.11 5.25
1547 1725 1.374125 TTGTCGTCATCCGGTGCAG 60.374 57.895 0.00 0.00 37.11 4.41
1548 1726 1.666553 GTTGTCGTCATCCGGTGCA 60.667 57.895 0.00 0.00 37.11 4.57
1549 1727 1.225376 TTGTTGTCGTCATCCGGTGC 61.225 55.000 0.00 0.00 37.11 5.01
1550 1728 1.194547 CTTTGTTGTCGTCATCCGGTG 59.805 52.381 0.00 0.00 37.11 4.94
1551 1729 1.202604 ACTTTGTTGTCGTCATCCGGT 60.203 47.619 0.00 0.00 37.11 5.28
1552 1730 1.508632 ACTTTGTTGTCGTCATCCGG 58.491 50.000 0.00 0.00 37.11 5.14
1553 1731 2.800544 AGAACTTTGTTGTCGTCATCCG 59.199 45.455 0.00 0.00 38.13 4.18
1554 1732 3.560068 ACAGAACTTTGTTGTCGTCATCC 59.440 43.478 0.00 0.00 0.00 3.51
1555 1733 4.270084 TCACAGAACTTTGTTGTCGTCATC 59.730 41.667 0.00 0.00 0.00 2.92
1556 1734 4.034048 GTCACAGAACTTTGTTGTCGTCAT 59.966 41.667 0.00 0.00 0.00 3.06
1557 1735 3.369756 GTCACAGAACTTTGTTGTCGTCA 59.630 43.478 0.00 0.00 0.00 4.35
1558 1736 3.541516 CGTCACAGAACTTTGTTGTCGTC 60.542 47.826 0.00 0.00 0.00 4.20
1559 1737 2.347452 CGTCACAGAACTTTGTTGTCGT 59.653 45.455 0.00 0.00 0.00 4.34
1560 1738 2.285602 CCGTCACAGAACTTTGTTGTCG 60.286 50.000 0.00 0.00 0.00 4.35
1561 1739 2.538939 GCCGTCACAGAACTTTGTTGTC 60.539 50.000 0.00 0.00 0.00 3.18
1562 1740 1.400494 GCCGTCACAGAACTTTGTTGT 59.600 47.619 0.00 0.00 0.00 3.32
1563 1741 1.400142 TGCCGTCACAGAACTTTGTTG 59.600 47.619 0.00 0.00 0.00 3.33
1564 1742 1.400494 GTGCCGTCACAGAACTTTGTT 59.600 47.619 0.00 0.00 42.66 2.83
1565 1743 1.014352 GTGCCGTCACAGAACTTTGT 58.986 50.000 0.00 0.00 42.66 2.83
1566 1744 0.042188 CGTGCCGTCACAGAACTTTG 60.042 55.000 0.00 0.00 43.28 2.77
1567 1745 0.461339 ACGTGCCGTCACAGAACTTT 60.461 50.000 0.00 0.00 43.28 2.66
1568 1746 1.143183 ACGTGCCGTCACAGAACTT 59.857 52.632 0.00 0.00 43.28 2.66
1569 1747 1.591594 CACGTGCCGTCACAGAACT 60.592 57.895 0.82 0.00 43.28 3.01
1570 1748 1.548973 CTCACGTGCCGTCACAGAAC 61.549 60.000 11.67 0.00 43.28 3.01
1571 1749 1.299850 CTCACGTGCCGTCACAGAA 60.300 57.895 11.67 0.00 43.28 3.02
1572 1750 2.335011 CTCACGTGCCGTCACAGA 59.665 61.111 11.67 0.00 43.28 3.41
1573 1751 2.693250 TTCCTCACGTGCCGTCACAG 62.693 60.000 11.67 0.41 43.28 3.66
1574 1752 2.787567 TTCCTCACGTGCCGTCACA 61.788 57.895 11.67 0.00 43.28 3.58
1575 1753 2.028484 TTCCTCACGTGCCGTCAC 59.972 61.111 11.67 0.00 38.32 3.67
1576 1754 2.028484 GTTCCTCACGTGCCGTCA 59.972 61.111 11.67 0.00 38.32 4.35
1577 1755 2.737376 GGTTCCTCACGTGCCGTC 60.737 66.667 11.67 0.00 38.32 4.79
1578 1756 4.657824 CGGTTCCTCACGTGCCGT 62.658 66.667 19.46 0.00 42.36 5.68
1579 1757 4.351938 TCGGTTCCTCACGTGCCG 62.352 66.667 21.06 21.06 43.32 5.69
1580 1758 2.432628 CTCGGTTCCTCACGTGCC 60.433 66.667 11.67 4.75 0.00 5.01
1581 1759 1.300697 AACTCGGTTCCTCACGTGC 60.301 57.895 11.67 0.00 0.00 5.34
1582 1760 0.031585 TCAACTCGGTTCCTCACGTG 59.968 55.000 9.94 9.94 0.00 4.49
1583 1761 0.748450 TTCAACTCGGTTCCTCACGT 59.252 50.000 0.00 0.00 0.00 4.49
1584 1762 1.993370 GATTCAACTCGGTTCCTCACG 59.007 52.381 0.00 0.00 0.00 4.35
1585 1763 2.996621 CTGATTCAACTCGGTTCCTCAC 59.003 50.000 0.00 0.00 0.00 3.51
1586 1764 2.612972 GCTGATTCAACTCGGTTCCTCA 60.613 50.000 0.00 0.00 0.00 3.86
1587 1765 2.003301 GCTGATTCAACTCGGTTCCTC 58.997 52.381 0.00 0.00 0.00 3.71
1588 1766 1.625818 AGCTGATTCAACTCGGTTCCT 59.374 47.619 0.00 0.00 0.00 3.36
1589 1767 1.734465 CAGCTGATTCAACTCGGTTCC 59.266 52.381 8.42 0.00 0.00 3.62
1590 1768 1.734465 CCAGCTGATTCAACTCGGTTC 59.266 52.381 17.39 0.00 0.00 3.62
1591 1769 1.347707 TCCAGCTGATTCAACTCGGTT 59.652 47.619 17.39 0.00 0.00 4.44
1592 1770 0.976641 TCCAGCTGATTCAACTCGGT 59.023 50.000 17.39 0.00 0.00 4.69
1593 1771 1.066573 ACTCCAGCTGATTCAACTCGG 60.067 52.381 17.39 0.00 0.00 4.63
1594 1772 2.376808 ACTCCAGCTGATTCAACTCG 57.623 50.000 17.39 0.00 0.00 4.18
1595 1773 3.668447 TCAACTCCAGCTGATTCAACTC 58.332 45.455 17.39 0.00 0.00 3.01
1596 1774 3.558746 CCTCAACTCCAGCTGATTCAACT 60.559 47.826 17.39 0.00 0.00 3.16
1597 1775 2.746362 CCTCAACTCCAGCTGATTCAAC 59.254 50.000 17.39 0.00 0.00 3.18
1598 1776 2.877300 GCCTCAACTCCAGCTGATTCAA 60.877 50.000 17.39 0.00 0.00 2.69
1599 1777 1.339438 GCCTCAACTCCAGCTGATTCA 60.339 52.381 17.39 0.00 0.00 2.57
1600 1778 1.339438 TGCCTCAACTCCAGCTGATTC 60.339 52.381 17.39 0.00 0.00 2.52
1601 1779 0.694771 TGCCTCAACTCCAGCTGATT 59.305 50.000 17.39 3.45 0.00 2.57
1602 1780 0.252479 CTGCCTCAACTCCAGCTGAT 59.748 55.000 17.39 0.00 0.00 2.90
1603 1781 0.833409 TCTGCCTCAACTCCAGCTGA 60.833 55.000 17.39 0.00 0.00 4.26
1604 1782 0.391395 CTCTGCCTCAACTCCAGCTG 60.391 60.000 6.78 6.78 0.00 4.24
1605 1783 1.551908 CCTCTGCCTCAACTCCAGCT 61.552 60.000 0.00 0.00 0.00 4.24
1606 1784 1.078567 CCTCTGCCTCAACTCCAGC 60.079 63.158 0.00 0.00 0.00 4.85
1607 1785 0.536260 CTCCTCTGCCTCAACTCCAG 59.464 60.000 0.00 0.00 0.00 3.86
1608 1786 1.548357 GCTCCTCTGCCTCAACTCCA 61.548 60.000 0.00 0.00 0.00 3.86
1609 1787 1.220477 GCTCCTCTGCCTCAACTCC 59.780 63.158 0.00 0.00 0.00 3.85
1610 1788 0.108233 CTGCTCCTCTGCCTCAACTC 60.108 60.000 0.00 0.00 0.00 3.01
1611 1789 0.835543 ACTGCTCCTCTGCCTCAACT 60.836 55.000 0.00 0.00 0.00 3.16
1612 1790 0.673022 CACTGCTCCTCTGCCTCAAC 60.673 60.000 0.00 0.00 0.00 3.18
1613 1791 1.675801 CACTGCTCCTCTGCCTCAA 59.324 57.895 0.00 0.00 0.00 3.02
1614 1792 2.288778 CCACTGCTCCTCTGCCTCA 61.289 63.158 0.00 0.00 0.00 3.86
1615 1793 2.583520 CCACTGCTCCTCTGCCTC 59.416 66.667 0.00 0.00 0.00 4.70
1616 1794 3.007920 CCCACTGCTCCTCTGCCT 61.008 66.667 0.00 0.00 0.00 4.75
1617 1795 4.106925 CCCCACTGCTCCTCTGCC 62.107 72.222 0.00 0.00 0.00 4.85
1618 1796 4.792804 GCCCCACTGCTCCTCTGC 62.793 72.222 0.00 0.00 0.00 4.26
1619 1797 4.463879 CGCCCCACTGCTCCTCTG 62.464 72.222 0.00 0.00 0.00 3.35
1620 1798 4.704103 TCGCCCCACTGCTCCTCT 62.704 66.667 0.00 0.00 0.00 3.69
1621 1799 3.672295 CTTCGCCCCACTGCTCCTC 62.672 68.421 0.00 0.00 0.00 3.71
1622 1800 3.710722 CTTCGCCCCACTGCTCCT 61.711 66.667 0.00 0.00 0.00 3.69
1623 1801 4.785453 CCTTCGCCCCACTGCTCC 62.785 72.222 0.00 0.00 0.00 4.70
1624 1802 3.672295 CTCCTTCGCCCCACTGCTC 62.672 68.421 0.00 0.00 0.00 4.26
1625 1803 3.710722 CTCCTTCGCCCCACTGCT 61.711 66.667 0.00 0.00 0.00 4.24
1626 1804 3.672295 CTCTCCTTCGCCCCACTGC 62.672 68.421 0.00 0.00 0.00 4.40
1627 1805 2.581354 CTCTCCTTCGCCCCACTG 59.419 66.667 0.00 0.00 0.00 3.66
1628 1806 2.685380 CCTCTCCTTCGCCCCACT 60.685 66.667 0.00 0.00 0.00 4.00
1629 1807 4.475135 GCCTCTCCTTCGCCCCAC 62.475 72.222 0.00 0.00 0.00 4.61
1635 1813 4.521062 CCAGCGGCCTCTCCTTCG 62.521 72.222 0.00 0.00 0.00 3.79
1636 1814 3.394836 ACCAGCGGCCTCTCCTTC 61.395 66.667 0.00 0.00 0.00 3.46
1637 1815 3.710722 CACCAGCGGCCTCTCCTT 61.711 66.667 0.00 0.00 0.00 3.36
1649 1827 4.351054 GTGCCAGACCCCCACCAG 62.351 72.222 0.00 0.00 0.00 4.00
1650 1828 4.918360 AGTGCCAGACCCCCACCA 62.918 66.667 0.00 0.00 0.00 4.17
1651 1829 4.351054 CAGTGCCAGACCCCCACC 62.351 72.222 0.00 0.00 0.00 4.61
1654 1832 4.729918 CTGCAGTGCCAGACCCCC 62.730 72.222 13.72 0.00 34.77 5.40
1655 1833 3.618780 CTCTGCAGTGCCAGACCCC 62.619 68.421 14.67 0.00 36.96 4.95
1656 1834 2.046507 CTCTGCAGTGCCAGACCC 60.047 66.667 14.67 0.00 36.96 4.46
1657 1835 2.046507 CCTCTGCAGTGCCAGACC 60.047 66.667 14.67 0.00 36.96 3.85
1658 1836 2.046507 CCCTCTGCAGTGCCAGAC 60.047 66.667 14.67 0.00 36.96 3.51
1659 1837 2.203832 TCCCTCTGCAGTGCCAGA 60.204 61.111 14.67 13.93 39.42 3.86
1660 1838 2.268280 CTCCCTCTGCAGTGCCAG 59.732 66.667 14.67 10.25 0.00 4.85
1661 1839 3.324930 CCTCCCTCTGCAGTGCCA 61.325 66.667 14.67 0.00 0.00 4.92
1662 1840 4.792804 GCCTCCCTCTGCAGTGCC 62.793 72.222 14.67 0.00 0.00 5.01
1664 1842 4.463879 CCGCCTCCCTCTGCAGTG 62.464 72.222 14.67 11.58 0.00 3.66
1666 1844 4.463879 CACCGCCTCCCTCTGCAG 62.464 72.222 7.63 7.63 0.00 4.41
1680 1858 4.778143 CCACCTAGCGCCACCACC 62.778 72.222 2.29 0.00 0.00 4.61
1681 1859 3.248446 TTCCACCTAGCGCCACCAC 62.248 63.158 2.29 0.00 0.00 4.16
1682 1860 2.925706 TTCCACCTAGCGCCACCA 60.926 61.111 2.29 0.00 0.00 4.17
1683 1861 2.125106 CTTCCACCTAGCGCCACC 60.125 66.667 2.29 0.00 0.00 4.61
1684 1862 2.125106 CCTTCCACCTAGCGCCAC 60.125 66.667 2.29 0.00 0.00 5.01
1685 1863 2.284331 TCCTTCCACCTAGCGCCA 60.284 61.111 2.29 0.00 0.00 5.69
1686 1864 2.501610 CTCCTTCCACCTAGCGCC 59.498 66.667 2.29 0.00 0.00 6.53
1687 1865 2.501610 CCTCCTTCCACCTAGCGC 59.498 66.667 0.00 0.00 0.00 5.92
1688 1866 2.435693 CCCCTCCTTCCACCTAGCG 61.436 68.421 0.00 0.00 0.00 4.26
1689 1867 0.620700 TTCCCCTCCTTCCACCTAGC 60.621 60.000 0.00 0.00 0.00 3.42
1690 1868 1.501582 CTTCCCCTCCTTCCACCTAG 58.498 60.000 0.00 0.00 0.00 3.02
1691 1869 0.044244 CCTTCCCCTCCTTCCACCTA 59.956 60.000 0.00 0.00 0.00 3.08
1692 1870 1.229984 CCTTCCCCTCCTTCCACCT 60.230 63.158 0.00 0.00 0.00 4.00
1693 1871 2.309504 CCCTTCCCCTCCTTCCACC 61.310 68.421 0.00 0.00 0.00 4.61
1694 1872 2.309504 CCCCTTCCCCTCCTTCCAC 61.310 68.421 0.00 0.00 0.00 4.02
1695 1873 1.848835 ATCCCCTTCCCCTCCTTCCA 61.849 60.000 0.00 0.00 0.00 3.53
1696 1874 0.271005 TATCCCCTTCCCCTCCTTCC 59.729 60.000 0.00 0.00 0.00 3.46
1697 1875 1.775459 GTTATCCCCTTCCCCTCCTTC 59.225 57.143 0.00 0.00 0.00 3.46
1698 1876 1.908643 GTTATCCCCTTCCCCTCCTT 58.091 55.000 0.00 0.00 0.00 3.36
1699 1877 0.400093 CGTTATCCCCTTCCCCTCCT 60.400 60.000 0.00 0.00 0.00 3.69
1700 1878 0.399519 TCGTTATCCCCTTCCCCTCC 60.400 60.000 0.00 0.00 0.00 4.30
1701 1879 1.049402 CTCGTTATCCCCTTCCCCTC 58.951 60.000 0.00 0.00 0.00 4.30
1702 1880 0.400093 CCTCGTTATCCCCTTCCCCT 60.400 60.000 0.00 0.00 0.00 4.79
1703 1881 0.399519 TCCTCGTTATCCCCTTCCCC 60.400 60.000 0.00 0.00 0.00 4.81
1704 1882 1.049402 CTCCTCGTTATCCCCTTCCC 58.951 60.000 0.00 0.00 0.00 3.97
1705 1883 2.083628 TCTCCTCGTTATCCCCTTCC 57.916 55.000 0.00 0.00 0.00 3.46
1706 1884 2.229302 CGATCTCCTCGTTATCCCCTTC 59.771 54.545 0.00 0.00 42.56 3.46
1707 1885 2.240279 CGATCTCCTCGTTATCCCCTT 58.760 52.381 0.00 0.00 42.56 3.95
1708 1886 1.912417 CGATCTCCTCGTTATCCCCT 58.088 55.000 0.00 0.00 42.56 4.79
1718 1896 2.128853 CTGCCTCGCTCGATCTCCTC 62.129 65.000 0.00 0.00 0.00 3.71
1719 1897 2.124109 TGCCTCGCTCGATCTCCT 60.124 61.111 0.00 0.00 0.00 3.69
1720 1898 2.334653 CTGCCTCGCTCGATCTCC 59.665 66.667 0.00 0.00 0.00 3.71
1721 1899 2.354539 GCTGCCTCGCTCGATCTC 60.355 66.667 0.00 0.00 0.00 2.75
1722 1900 2.714991 TTGCTGCCTCGCTCGATCT 61.715 57.895 0.00 0.00 0.00 2.75
1723 1901 2.202797 TTGCTGCCTCGCTCGATC 60.203 61.111 0.00 0.00 0.00 3.69
1724 1902 2.510238 GTTGCTGCCTCGCTCGAT 60.510 61.111 0.00 0.00 0.00 3.59
1731 1909 3.989698 TAGCGAGCGTTGCTGCCTC 62.990 63.158 10.11 0.00 43.85 4.70
1732 1910 3.376935 ATAGCGAGCGTTGCTGCCT 62.377 57.895 10.11 0.00 43.85 4.75
1733 1911 2.875786 GATAGCGAGCGTTGCTGCC 61.876 63.158 10.11 0.00 43.85 4.85
1734 1912 1.816214 GAGATAGCGAGCGTTGCTGC 61.816 60.000 10.11 0.62 43.85 5.25
1735 1913 1.211818 GGAGATAGCGAGCGTTGCTG 61.212 60.000 10.11 0.00 43.85 4.41
1736 1914 1.066587 GGAGATAGCGAGCGTTGCT 59.933 57.895 5.72 5.72 46.29 3.91
1737 1915 1.066587 AGGAGATAGCGAGCGTTGC 59.933 57.895 0.00 0.00 0.00 4.17
1738 1916 0.596083 CCAGGAGATAGCGAGCGTTG 60.596 60.000 0.00 0.00 0.00 4.10
1739 1917 1.736586 CCAGGAGATAGCGAGCGTT 59.263 57.895 0.00 0.00 0.00 4.84
1740 1918 2.851071 GCCAGGAGATAGCGAGCGT 61.851 63.158 0.00 0.00 0.00 5.07
1741 1919 2.049618 GCCAGGAGATAGCGAGCG 60.050 66.667 0.00 0.00 0.00 5.03
1759 1937 3.675563 ATCGATCTCCCTCGCGCC 61.676 66.667 0.00 0.00 38.52 6.53
1760 1938 2.429907 CATCGATCTCCCTCGCGC 60.430 66.667 0.00 0.00 38.52 6.86
1761 1939 2.256764 CCATCGATCTCCCTCGCG 59.743 66.667 0.00 0.00 38.52 5.87
1762 1940 1.872197 CTCCCATCGATCTCCCTCGC 61.872 65.000 0.00 0.00 38.52 5.03
1763 1941 0.250945 TCTCCCATCGATCTCCCTCG 60.251 60.000 0.00 0.00 39.99 4.63
1764 1942 1.253100 GTCTCCCATCGATCTCCCTC 58.747 60.000 0.00 0.00 0.00 4.30
1765 1943 0.538516 CGTCTCCCATCGATCTCCCT 60.539 60.000 0.00 0.00 0.00 4.20
1766 1944 0.537600 TCGTCTCCCATCGATCTCCC 60.538 60.000 0.00 0.00 0.00 4.30
1767 1945 0.878416 CTCGTCTCCCATCGATCTCC 59.122 60.000 0.00 0.00 35.57 3.71
1768 1946 0.239879 GCTCGTCTCCCATCGATCTC 59.760 60.000 0.00 0.00 35.57 2.75
1769 1947 1.511318 CGCTCGTCTCCCATCGATCT 61.511 60.000 0.00 0.00 35.57 2.75
1770 1948 1.081774 CGCTCGTCTCCCATCGATC 60.082 63.158 0.00 0.00 35.57 3.69
1771 1949 1.511318 CTCGCTCGTCTCCCATCGAT 61.511 60.000 0.00 0.00 35.57 3.59
1772 1950 2.124860 TCGCTCGTCTCCCATCGA 60.125 61.111 0.00 0.00 34.88 3.59
1773 1951 2.111932 CTCTCGCTCGTCTCCCATCG 62.112 65.000 0.00 0.00 0.00 3.84
1774 1952 0.816018 TCTCTCGCTCGTCTCCCATC 60.816 60.000 0.00 0.00 0.00 3.51
1775 1953 0.817634 CTCTCTCGCTCGTCTCCCAT 60.818 60.000 0.00 0.00 0.00 4.00
1776 1954 1.450491 CTCTCTCGCTCGTCTCCCA 60.450 63.158 0.00 0.00 0.00 4.37
1777 1955 2.184167 CCTCTCTCGCTCGTCTCCC 61.184 68.421 0.00 0.00 0.00 4.30
1778 1956 1.153329 TCCTCTCTCGCTCGTCTCC 60.153 63.158 0.00 0.00 0.00 3.71
1779 1957 1.157870 CCTCCTCTCTCGCTCGTCTC 61.158 65.000 0.00 0.00 0.00 3.36
1780 1958 1.153249 CCTCCTCTCTCGCTCGTCT 60.153 63.158 0.00 0.00 0.00 4.18
1781 1959 2.184167 CCCTCCTCTCTCGCTCGTC 61.184 68.421 0.00 0.00 0.00 4.20
1782 1960 2.124487 CCCTCCTCTCTCGCTCGT 60.124 66.667 0.00 0.00 0.00 4.18
1783 1961 2.124487 ACCCTCCTCTCTCGCTCG 60.124 66.667 0.00 0.00 0.00 5.03
1784 1962 2.184167 CGACCCTCCTCTCTCGCTC 61.184 68.421 0.00 0.00 0.00 5.03
1785 1963 2.124487 CGACCCTCCTCTCTCGCT 60.124 66.667 0.00 0.00 0.00 4.93
1786 1964 2.124653 TCGACCCTCCTCTCTCGC 60.125 66.667 0.00 0.00 0.00 5.03
1787 1965 2.184167 GCTCGACCCTCCTCTCTCG 61.184 68.421 0.00 0.00 0.00 4.04
1788 1966 1.077357 TGCTCGACCCTCCTCTCTC 60.077 63.158 0.00 0.00 0.00 3.20
1789 1967 1.077068 CTGCTCGACCCTCCTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
1790 1968 2.124693 CCTGCTCGACCCTCCTCTC 61.125 68.421 0.00 0.00 0.00 3.20
1791 1969 2.043450 CCTGCTCGACCCTCCTCT 60.043 66.667 0.00 0.00 0.00 3.69
1792 1970 2.043852 TCCTGCTCGACCCTCCTC 60.044 66.667 0.00 0.00 0.00 3.71
1793 1971 2.043450 CTCCTGCTCGACCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
1794 1972 3.151022 CCTCCTGCTCGACCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
1795 1973 3.844090 GCCTCCTGCTCGACCCTC 61.844 72.222 0.00 0.00 36.87 4.30
1799 1977 4.803426 CACCGCCTCCTGCTCGAC 62.803 72.222 0.00 0.00 38.05 4.20
1812 1990 3.465403 CTCTCCCTCTGCCCACCG 61.465 72.222 0.00 0.00 0.00 4.94
1813 1991 1.383803 ATCTCTCCCTCTGCCCACC 60.384 63.158 0.00 0.00 0.00 4.61
1814 1992 1.694133 CCATCTCTCCCTCTGCCCAC 61.694 65.000 0.00 0.00 0.00 4.61
1815 1993 1.383664 CCATCTCTCCCTCTGCCCA 60.384 63.158 0.00 0.00 0.00 5.36
1816 1994 2.146061 CCCATCTCTCCCTCTGCCC 61.146 68.421 0.00 0.00 0.00 5.36
1817 1995 0.473501 ATCCCATCTCTCCCTCTGCC 60.474 60.000 0.00 0.00 0.00 4.85
1818 1996 1.072015 CAATCCCATCTCTCCCTCTGC 59.928 57.143 0.00 0.00 0.00 4.26
1819 1997 1.698532 CCAATCCCATCTCTCCCTCTG 59.301 57.143 0.00 0.00 0.00 3.35
1820 1998 1.415716 CCCAATCCCATCTCTCCCTCT 60.416 57.143 0.00 0.00 0.00 3.69
1821 1999 1.063183 CCCAATCCCATCTCTCCCTC 58.937 60.000 0.00 0.00 0.00 4.30
1822 2000 0.402566 CCCCAATCCCATCTCTCCCT 60.403 60.000 0.00 0.00 0.00 4.20
1823 2001 0.401979 TCCCCAATCCCATCTCTCCC 60.402 60.000 0.00 0.00 0.00 4.30
1824 2002 1.423161 CTTCCCCAATCCCATCTCTCC 59.577 57.143 0.00 0.00 0.00 3.71
1825 2003 1.423161 CCTTCCCCAATCCCATCTCTC 59.577 57.143 0.00 0.00 0.00 3.20
1826 2004 1.527457 CCTTCCCCAATCCCATCTCT 58.473 55.000 0.00 0.00 0.00 3.10
1835 2013 0.326808 TAGCGTACCCCTTCCCCAAT 60.327 55.000 0.00 0.00 0.00 3.16
1837 2015 1.382146 CTAGCGTACCCCTTCCCCA 60.382 63.158 0.00 0.00 0.00 4.96
1845 2023 0.672889 GCTCTAACCCTAGCGTACCC 59.327 60.000 0.00 0.00 0.00 3.69
1849 2027 2.125961 CCGGCTCTAACCCTAGCGT 61.126 63.158 0.00 0.00 39.71 5.07
1947 2126 1.567357 GAGGAAGAGAGAAGCCCAGT 58.433 55.000 0.00 0.00 0.00 4.00
2006 2198 4.962155 TCTTCCAACCTTCTCTTGTCTTC 58.038 43.478 0.00 0.00 0.00 2.87
2011 2203 6.890979 AATTCTTCTTCCAACCTTCTCTTG 57.109 37.500 0.00 0.00 0.00 3.02
2099 2297 7.465353 TGAGTTTAAATCTTGGAATCATGCA 57.535 32.000 0.00 0.00 0.00 3.96
2168 2369 4.631131 GAACATTTTTGGACCTTCCCAAG 58.369 43.478 0.00 0.00 45.89 3.61
2192 2394 1.631388 TCCGGAGCTCCACCAAAAATA 59.369 47.619 31.67 3.45 35.14 1.40
2251 2454 7.346751 TCCCAATGCCTTTGTTATCTTAATC 57.653 36.000 0.00 0.00 33.15 1.75
2286 2492 6.773976 AATTCGGAATTCACCATAACACAT 57.226 33.333 10.11 0.00 0.00 3.21
2415 2639 8.024865 TGTCATTAATCTTTGCATCTCAACTTG 58.975 33.333 0.00 0.00 33.73 3.16
2416 2640 8.114331 TGTCATTAATCTTTGCATCTCAACTT 57.886 30.769 0.00 0.00 33.73 2.66
2487 2724 2.598589 CGAGTTTCGTCGGGTGATTTA 58.401 47.619 0.00 0.00 36.26 1.40
2524 2761 5.128827 TCCAGATGCCTTCTAGTAATTTCGT 59.871 40.000 0.00 0.00 31.77 3.85
2525 2762 5.601662 TCCAGATGCCTTCTAGTAATTTCG 58.398 41.667 0.00 0.00 31.77 3.46
2526 2763 5.468409 GCTCCAGATGCCTTCTAGTAATTTC 59.532 44.000 0.00 0.00 31.77 2.17
2530 2767 2.362397 CGCTCCAGATGCCTTCTAGTAA 59.638 50.000 0.00 0.00 31.77 2.24
2531 2768 1.957177 CGCTCCAGATGCCTTCTAGTA 59.043 52.381 0.00 0.00 31.77 1.82
2533 2770 0.749649 ACGCTCCAGATGCCTTCTAG 59.250 55.000 0.00 0.00 31.77 2.43
2534 2771 0.747255 GACGCTCCAGATGCCTTCTA 59.253 55.000 0.00 0.00 31.77 2.10
2535 2772 1.519719 GACGCTCCAGATGCCTTCT 59.480 57.895 0.00 0.00 33.90 2.85
2540 2777 2.583593 GACCGACGCTCCAGATGC 60.584 66.667 0.00 0.00 0.00 3.91
2582 2819 1.000163 TCTCGTCGCAAAGCTCTCTTT 60.000 47.619 0.00 0.00 42.92 2.52
2623 2860 0.462225 TTGGCGTCGAAGTTGTTCCA 60.462 50.000 0.00 0.00 0.00 3.53
2686 2923 0.384669 GGCATGCTTCATCTCCTTGC 59.615 55.000 18.92 0.00 0.00 4.01
2700 2937 2.180017 GGCTCGTTGCAAGGCATG 59.820 61.111 14.22 7.99 45.15 4.06
2785 3022 7.070074 GGGACTTATAGTTCTTGAGGAAGATCA 59.930 40.741 0.00 0.00 38.05 2.92
2786 3023 7.289084 AGGGACTTATAGTTCTTGAGGAAGATC 59.711 40.741 0.00 0.00 34.18 2.75
2804 3041 1.901591 AGTTGTCGTCGAGGGACTTA 58.098 50.000 15.30 3.88 41.55 2.24
2846 3083 3.518590 CTTGGCCTTCATGAATTCTTGC 58.481 45.455 8.96 7.00 0.00 4.01
2853 3090 1.076024 AGAAGCCTTGGCCTTCATGAA 59.924 47.619 8.12 8.12 40.83 2.57
2891 3128 0.950836 CATGGAGTTTGGTCGTTGCA 59.049 50.000 0.00 0.00 0.00 4.08
2903 3140 1.827344 TCATGCTCGTTCTCATGGAGT 59.173 47.619 0.00 0.00 40.20 3.85
2938 3175 0.178767 CTCATCGGGCTTGGACATCA 59.821 55.000 0.00 0.00 0.00 3.07
2997 3234 4.976224 CATCATCAATGCCACAAAGAGA 57.024 40.909 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.