Multiple sequence alignment - TraesCS2A01G237700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G237700 chr2A 100.000 9713 0 0 1 9713 313779013 313769301 0.000000e+00 17937.0
1 TraesCS2A01G237700 chr2A 92.806 695 34 8 1732 2411 313776602 313775909 0.000000e+00 992.0
2 TraesCS2A01G237700 chr2A 92.806 695 34 8 2412 3105 313777282 313776603 0.000000e+00 992.0
3 TraesCS2A01G237700 chr2A 93.972 282 4 3 5069 5337 313773677 313773396 1.950000e-111 414.0
4 TraesCS2A01G237700 chr2A 93.972 282 4 3 5337 5618 313773945 313773677 1.950000e-111 414.0
5 TraesCS2A01G237700 chr2A 80.000 175 25 9 7581 7749 65517762 65517932 4.760000e-23 121.0
6 TraesCS2A01G237700 chr2A 95.946 74 3 0 9042 9115 313769907 313769834 4.760000e-23 121.0
7 TraesCS2A01G237700 chr2A 95.946 74 3 0 9107 9180 313769972 313769899 4.760000e-23 121.0
8 TraesCS2A01G237700 chr2A 92.308 52 0 4 8638 8688 313770340 313770292 4.870000e-08 71.3
9 TraesCS2A01G237700 chr2A 92.308 52 0 4 8674 8722 313770376 313770326 4.870000e-08 71.3
10 TraesCS2A01G237700 chr2A 89.091 55 4 2 7525 7577 17665650 17665596 6.300000e-07 67.6
11 TraesCS2A01G237700 chr2A 91.667 48 2 2 8077 8122 740140534 740140487 2.260000e-06 65.8
12 TraesCS2A01G237700 chr2D 97.910 2919 48 4 849 3757 276939664 276936749 0.000000e+00 5040.0
13 TraesCS2A01G237700 chr2D 96.533 1615 25 3 3750 5337 276935675 276934065 0.000000e+00 2643.0
14 TraesCS2A01G237700 chr2D 98.904 1095 12 0 5948 7042 276934036 276932942 0.000000e+00 1956.0
15 TraesCS2A01G237700 chr2D 98.359 1036 14 3 7042 8075 276932819 276931785 0.000000e+00 1816.0
16 TraesCS2A01G237700 chr2D 93.795 693 29 7 1732 2411 276938091 276937400 0.000000e+00 1029.0
17 TraesCS2A01G237700 chr2D 93.094 695 33 7 2412 3105 276938772 276938092 0.000000e+00 1003.0
18 TraesCS2A01G237700 chr2D 97.331 562 11 2 8121 8678 276931801 276931240 0.000000e+00 952.0
19 TraesCS2A01G237700 chr2D 86.152 751 80 21 78 815 264468999 264468260 0.000000e+00 789.0
20 TraesCS2A01G237700 chr2D 90.359 446 41 1 9268 9713 276931175 276930732 1.410000e-162 584.0
21 TraesCS2A01G237700 chr2D 94.231 312 5 5 5337 5648 276934333 276934035 1.910000e-126 464.0
22 TraesCS2A01G237700 chr2D 97.115 104 3 0 8674 8777 276931280 276931177 1.000000e-39 176.0
23 TraesCS2A01G237700 chr2D 84.483 58 6 3 7608 7665 22435475 22435421 5.000000e-03 54.7
24 TraesCS2A01G237700 chr2B 97.616 2055 38 6 3287 5337 329479099 329477052 0.000000e+00 3513.0
25 TraesCS2A01G237700 chr2B 95.911 2103 56 13 5978 8075 329475280 329473203 0.000000e+00 3380.0
26 TraesCS2A01G237700 chr2B 96.282 1049 23 7 873 1914 329486931 329485892 0.000000e+00 1707.0
27 TraesCS2A01G237700 chr2B 96.196 999 30 4 1909 2905 329480850 329479858 0.000000e+00 1628.0
28 TraesCS2A01G237700 chr2B 95.730 562 20 2 8121 8678 329473219 329472658 0.000000e+00 902.0
29 TraesCS2A01G237700 chr2B 93.436 518 20 6 2589 3105 329480850 329480346 0.000000e+00 756.0
30 TraesCS2A01G237700 chr2B 98.015 403 8 0 2898 3300 329479674 329479272 0.000000e+00 701.0
31 TraesCS2A01G237700 chr2B 92.903 465 30 1 1732 2196 329480345 329479884 0.000000e+00 673.0
32 TraesCS2A01G237700 chr2B 93.590 312 7 5 5337 5648 329477320 329477022 4.140000e-123 453.0
33 TraesCS2A01G237700 chr2B 94.737 209 8 3 2205 2411 329479674 329479467 1.220000e-83 322.0
34 TraesCS2A01G237700 chr2B 95.628 183 8 0 2412 2594 329486074 329485892 2.650000e-75 294.0
35 TraesCS2A01G237700 chr2B 98.148 108 2 0 8674 8781 329472698 329472591 1.290000e-43 189.0
36 TraesCS2A01G237700 chr2B 77.982 109 15 8 7659 7765 531051886 531051785 1.050000e-04 60.2
37 TraesCS2A01G237700 chr2B 96.970 33 0 1 5922 5954 439899569 439899538 5.000000e-03 54.7
38 TraesCS2A01G237700 chr2B 100.000 29 0 0 5646 5674 800250461 800250433 5.000000e-03 54.7
39 TraesCS2A01G237700 chr6A 88.863 844 71 12 1 822 281983721 281984563 0.000000e+00 1016.0
40 TraesCS2A01G237700 chr4A 88.525 732 72 9 56 778 318220196 318220924 0.000000e+00 876.0
41 TraesCS2A01G237700 chr4A 92.500 40 1 2 7612 7651 628617344 628617381 1.000000e-03 56.5
42 TraesCS2A01G237700 chr3A 86.633 793 73 28 2 776 190232206 190231429 0.000000e+00 846.0
43 TraesCS2A01G237700 chr3A 100.000 39 0 0 823 861 47388550 47388512 1.350000e-08 73.1
44 TraesCS2A01G237700 chr3A 97.059 34 1 0 5227 5260 468736359 468736326 3.790000e-04 58.4
45 TraesCS2A01G237700 chr1A 86.352 784 90 14 2 773 173705129 173705907 0.000000e+00 839.0
46 TraesCS2A01G237700 chr1A 90.698 43 2 2 5646 5687 493134216 493134257 1.000000e-03 56.5
47 TraesCS2A01G237700 chrUn 87.415 731 75 14 55 776 72947297 72948019 0.000000e+00 824.0
48 TraesCS2A01G237700 chrUn 87.415 731 75 14 55 776 259743096 259742374 0.000000e+00 824.0
49 TraesCS2A01G237700 chr3D 86.640 756 58 35 48 776 243855046 243854307 0.000000e+00 797.0
50 TraesCS2A01G237700 chr3D 93.069 202 14 0 8818 9019 290877121 290876920 7.380000e-76 296.0
51 TraesCS2A01G237700 chr3D 93.976 166 10 0 9107 9272 290876928 290876763 1.620000e-62 252.0
52 TraesCS2A01G237700 chr3D 96.250 80 3 0 9036 9115 290876934 290876855 2.200000e-26 132.0
53 TraesCS2A01G237700 chr1D 85.545 761 82 21 80 822 222168454 222169204 0.000000e+00 771.0
54 TraesCS2A01G237700 chr1D 90.798 163 15 0 9107 9269 381302504 381302666 1.640000e-52 219.0
55 TraesCS2A01G237700 chr1D 97.403 77 2 0 9036 9112 381302498 381302574 2.200000e-26 132.0
56 TraesCS2A01G237700 chr1D 84.615 91 13 1 1 91 184514449 184514360 1.340000e-13 89.8
57 TraesCS2A01G237700 chr1D 98.039 51 0 1 8073 8122 205963458 205963408 4.830000e-13 87.9
58 TraesCS2A01G237700 chr1D 87.143 70 8 1 4 73 207254312 207254244 2.910000e-10 78.7
59 TraesCS2A01G237700 chr5A 81.005 816 86 38 1 776 220978792 220978006 1.410000e-162 584.0
60 TraesCS2A01G237700 chr5A 78.761 452 57 20 1 429 262618120 262618555 5.780000e-67 267.0
61 TraesCS2A01G237700 chr5A 96.078 51 2 0 8073 8123 334357614 334357564 6.250000e-12 84.2
62 TraesCS2A01G237700 chr4B 80.387 826 99 42 2 778 314938646 314937835 3.940000e-158 569.0
63 TraesCS2A01G237700 chr4B 90.769 65 3 3 7524 7585 28153903 28153967 6.250000e-12 84.2
64 TraesCS2A01G237700 chr6B 80.381 683 71 40 149 791 468800283 468799624 2.470000e-125 460.0
65 TraesCS2A01G237700 chr6B 90.244 164 14 2 9107 9269 143749171 143749333 7.640000e-51 213.0
66 TraesCS2A01G237700 chr6B 97.403 77 2 0 9036 9112 143749165 143749241 2.200000e-26 132.0
67 TraesCS2A01G237700 chr6B 88.679 53 5 1 7535 7586 180879762 180879710 8.140000e-06 63.9
68 TraesCS2A01G237700 chr6B 100.000 29 0 0 5646 5674 50402012 50401984 5.000000e-03 54.7
69 TraesCS2A01G237700 chr1B 94.578 166 8 1 5788 5953 2108496 2108332 1.250000e-63 255.0
70 TraesCS2A01G237700 chr1B 92.771 166 12 0 9107 9272 513672474 513672639 3.510000e-59 241.0
71 TraesCS2A01G237700 chr1B 92.857 126 8 1 5647 5771 2108692 2108567 2.150000e-41 182.0
72 TraesCS2A01G237700 chr1B 98.750 80 1 0 9036 9115 513672468 513672547 1.020000e-29 143.0
73 TraesCS2A01G237700 chr1B 92.500 80 6 0 9036 9115 604102593 604102514 2.220000e-21 115.0
74 TraesCS2A01G237700 chr1B 84.932 73 9 2 7581 7652 174921321 174921392 1.350000e-08 73.1
75 TraesCS2A01G237700 chr1B 92.857 42 2 1 8086 8126 411184062 411184021 1.050000e-04 60.2
76 TraesCS2A01G237700 chr6D 94.479 163 8 1 5787 5949 25849479 25849318 5.820000e-62 250.0
77 TraesCS2A01G237700 chr6D 91.270 126 10 1 5647 5771 25849674 25849549 4.660000e-38 171.0
78 TraesCS2A01G237700 chr6D 85.965 57 7 1 5646 5701 271993982 271994038 1.050000e-04 60.2
79 TraesCS2A01G237700 chr5B 92.025 163 13 0 9107 9269 601323571 601323733 7.590000e-56 230.0
80 TraesCS2A01G237700 chr5B 98.701 77 1 0 9036 9112 601323565 601323641 4.730000e-28 137.0
81 TraesCS2A01G237700 chr5B 100.000 42 0 0 820 861 629346820 629346861 2.910000e-10 78.7
82 TraesCS2A01G237700 chr5B 87.500 64 5 3 7526 7586 470663149 470663086 4.870000e-08 71.3
83 TraesCS2A01G237700 chr5B 86.364 66 8 1 7587 7652 676253182 676253118 4.870000e-08 71.3
84 TraesCS2A01G237700 chr5B 85.938 64 6 2 7526 7586 696751674 696751611 2.260000e-06 65.8
85 TraesCS2A01G237700 chr7D 80.976 205 27 7 6342 6543 619664704 619664509 1.690000e-32 152.0
86 TraesCS2A01G237700 chr7D 88.710 62 6 1 5211 5271 28669304 28669365 3.760000e-09 75.0
87 TraesCS2A01G237700 chr7D 97.619 42 1 0 820 861 474676244 474676203 1.350000e-08 73.1
88 TraesCS2A01G237700 chr7D 89.286 56 5 1 9291 9346 535568894 535568948 1.750000e-07 69.4
89 TraesCS2A01G237700 chr4D 93.902 82 5 0 9036 9117 386829577 386829658 3.680000e-24 124.0
90 TraesCS2A01G237700 chr4D 95.652 46 2 0 8077 8122 195626448 195626403 3.760000e-09 75.0
91 TraesCS2A01G237700 chr4D 78.899 109 19 3 5646 5752 502139704 502139810 4.870000e-08 71.3
92 TraesCS2A01G237700 chr4D 87.273 55 7 0 9311 9365 329020328 329020382 8.140000e-06 63.9
93 TraesCS2A01G237700 chr3B 78.378 148 15 4 6020 6154 68209443 68209300 8.090000e-11 80.5
94 TraesCS2A01G237700 chr3B 87.719 57 7 0 6098 6154 68203565 68203509 6.300000e-07 67.6
95 TraesCS2A01G237700 chr3B 100.000 33 0 0 7585 7617 795178590 795178558 2.930000e-05 62.1
96 TraesCS2A01G237700 chr7B 97.727 44 1 0 820 863 630138572 630138615 1.050000e-09 76.8
97 TraesCS2A01G237700 chr7B 89.655 58 6 0 7581 7638 137261730 137261787 3.760000e-09 75.0
98 TraesCS2A01G237700 chr7B 85.714 56 6 2 5647 5701 561278944 561278998 3.790000e-04 58.4
99 TraesCS2A01G237700 chr7A 95.238 42 1 1 820 861 607604892 607604852 2.260000e-06 65.8
100 TraesCS2A01G237700 chr7A 88.679 53 5 1 7535 7586 722204441 722204493 8.140000e-06 63.9
101 TraesCS2A01G237700 chr5D 100.000 31 0 0 5644 5674 84389323 84389293 3.790000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G237700 chr2A 313769301 313779013 9712 True 17937.000 17937 100.0000 1 9713 1 chr2A.!!$R2 9712
1 TraesCS2A01G237700 chr2A 313769834 313777282 7448 True 399.575 992 93.7580 1732 9180 8 chr2A.!!$R4 7448
2 TraesCS2A01G237700 chr2D 276930732 276939664 8932 True 1566.300 5040 95.7631 849 9713 10 chr2D.!!$R3 8864
3 TraesCS2A01G237700 chr2D 264468260 264468999 739 True 789.000 789 86.1520 78 815 1 chr2D.!!$R2 737
4 TraesCS2A01G237700 chr2B 329472591 329480850 8259 True 1251.700 3513 95.6282 1732 8781 10 chr2B.!!$R4 7049
5 TraesCS2A01G237700 chr2B 329485892 329486931 1039 True 1000.500 1707 95.9550 873 2594 2 chr2B.!!$R5 1721
6 TraesCS2A01G237700 chr6A 281983721 281984563 842 False 1016.000 1016 88.8630 1 822 1 chr6A.!!$F1 821
7 TraesCS2A01G237700 chr4A 318220196 318220924 728 False 876.000 876 88.5250 56 778 1 chr4A.!!$F1 722
8 TraesCS2A01G237700 chr3A 190231429 190232206 777 True 846.000 846 86.6330 2 776 1 chr3A.!!$R2 774
9 TraesCS2A01G237700 chr1A 173705129 173705907 778 False 839.000 839 86.3520 2 773 1 chr1A.!!$F1 771
10 TraesCS2A01G237700 chrUn 72947297 72948019 722 False 824.000 824 87.4150 55 776 1 chrUn.!!$F1 721
11 TraesCS2A01G237700 chrUn 259742374 259743096 722 True 824.000 824 87.4150 55 776 1 chrUn.!!$R1 721
12 TraesCS2A01G237700 chr3D 243854307 243855046 739 True 797.000 797 86.6400 48 776 1 chr3D.!!$R1 728
13 TraesCS2A01G237700 chr1D 222168454 222169204 750 False 771.000 771 85.5450 80 822 1 chr1D.!!$F1 742
14 TraesCS2A01G237700 chr5A 220978006 220978792 786 True 584.000 584 81.0050 1 776 1 chr5A.!!$R1 775
15 TraesCS2A01G237700 chr4B 314937835 314938646 811 True 569.000 569 80.3870 2 778 1 chr4B.!!$R1 776
16 TraesCS2A01G237700 chr6B 468799624 468800283 659 True 460.000 460 80.3810 149 791 1 chr6B.!!$R3 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 747 0.035725 TGAGGCGACGGTCTCTCTTA 60.036 55.0 20.77 6.38 45.33 2.10 F
1041 1128 0.551396 CTCACCCCCAATCCCCTTAC 59.449 60.0 0.00 0.00 0.00 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1494 1584 1.079127 AAGCTAATCAGGCGCACGT 60.079 52.632 10.83 0.0 34.52 4.49 R
9180 12608 3.057245 GCACTTGTGATTCCCTTTCTTCC 60.057 47.826 4.79 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 80 0.105964 CAGTTTCGTCAGGTGGTGGA 59.894 55.000 0.00 0.00 0.00 4.02
117 139 2.124320 ATTTCGGGCACGGGATGG 60.124 61.111 9.32 0.00 41.39 3.51
121 143 4.530857 CGGGCACGGGATGGACTC 62.531 72.222 0.00 0.00 36.18 3.36
138 161 2.142104 TCGGGTTTTCGAGGTGGGT 61.142 57.895 0.00 0.00 34.82 4.51
177 200 2.093306 TCGAGCGATTTTGTGGATGT 57.907 45.000 0.00 0.00 0.00 3.06
184 207 3.551485 GCGATTTTGTGGATGTAAATGGC 59.449 43.478 0.00 0.00 36.39 4.40
215 238 3.304829 GGGAGAAAGCTAGATCCACTCT 58.695 50.000 11.81 0.00 38.06 3.24
357 389 4.008330 GCTAGAAACAAAAGGTAGGGGTC 58.992 47.826 0.00 0.00 0.00 4.46
420 454 1.458588 GGTGGAAACCCTTTGGCCA 60.459 57.895 0.00 0.00 33.59 5.36
471 529 0.538977 AACACGAGAGGGGAACGAGA 60.539 55.000 0.00 0.00 40.46 4.04
522 580 4.832248 ACAAGATTCGGTCACACATATGT 58.168 39.130 1.41 1.41 40.80 2.29
561 622 6.536582 CACAAAGAGATACACGATCCAAATCT 59.463 38.462 0.00 0.00 34.80 2.40
579 640 7.279981 TCCAAATCTAACAAAGGACGATACATG 59.720 37.037 0.00 0.00 0.00 3.21
658 728 7.353414 TGAATCTAAGTGGATCTTCTTCGAT 57.647 36.000 6.29 8.20 37.56 3.59
677 747 0.035725 TGAGGCGACGGTCTCTCTTA 60.036 55.000 20.77 6.38 45.33 2.10
735 807 5.514274 TCACATATGAGCTATCACAACGA 57.486 39.130 10.38 0.00 38.57 3.85
739 811 8.306761 TCACATATGAGCTATCACAACGATAAT 58.693 33.333 10.38 0.00 38.57 1.28
748 820 8.421784 AGCTATCACAACGATAATCCTAGAAAA 58.578 33.333 0.00 0.00 36.14 2.29
834 909 4.084888 GCGACCCAAAACCTCGCG 62.085 66.667 0.00 0.00 42.94 5.87
835 910 3.419759 CGACCCAAAACCTCGCGG 61.420 66.667 6.13 0.00 0.00 6.46
836 911 3.053896 GACCCAAAACCTCGCGGG 61.054 66.667 6.13 0.59 44.88 6.13
837 912 4.653888 ACCCAAAACCTCGCGGGG 62.654 66.667 27.07 27.07 43.52 5.73
840 915 3.737172 CAAAACCTCGCGGGGCTG 61.737 66.667 28.82 16.87 40.03 4.85
871 946 3.674997 GAACAAGGCCTTACTGATGTCA 58.325 45.455 20.00 0.00 0.00 3.58
884 959 1.270907 GATGTCAGAGACTGGTGGGT 58.729 55.000 0.00 0.00 33.15 4.51
1041 1128 0.551396 CTCACCCCCAATCCCCTTAC 59.449 60.000 0.00 0.00 0.00 2.34
1236 1326 2.770447 TGGCCACATCCCAACTAGATA 58.230 47.619 0.00 0.00 0.00 1.98
1494 1584 4.114015 TCTCCTTTGAGTACAGAGGTGA 57.886 45.455 0.00 0.00 45.21 4.02
1712 1803 4.095782 TGTCCAATAGTTCGCTTAAATGCC 59.904 41.667 0.00 0.00 0.00 4.40
9184 12612 2.731374 GGATCTCCCTCGCGGAAG 59.269 66.667 6.13 0.00 41.40 3.46
9185 12613 1.828660 GGATCTCCCTCGCGGAAGA 60.829 63.158 6.13 4.64 41.40 2.87
9186 12614 1.392710 GGATCTCCCTCGCGGAAGAA 61.393 60.000 6.13 0.00 41.40 2.52
9187 12615 0.460311 GATCTCCCTCGCGGAAGAAA 59.540 55.000 6.13 0.00 41.40 2.52
9188 12616 0.461961 ATCTCCCTCGCGGAAGAAAG 59.538 55.000 6.13 0.00 41.40 2.62
9189 12617 1.153549 CTCCCTCGCGGAAGAAAGG 60.154 63.158 6.13 3.93 41.40 3.11
9190 12618 2.125106 CCCTCGCGGAAGAAAGGG 60.125 66.667 13.29 13.29 44.60 3.95
9191 12619 2.978824 CCTCGCGGAAGAAAGGGA 59.021 61.111 6.13 0.00 32.52 4.20
9192 12620 1.295423 CCTCGCGGAAGAAAGGGAA 59.705 57.895 6.13 0.00 32.52 3.97
9193 12621 0.107654 CCTCGCGGAAGAAAGGGAAT 60.108 55.000 6.13 0.00 32.52 3.01
9194 12622 1.291132 CTCGCGGAAGAAAGGGAATC 58.709 55.000 6.13 0.00 0.00 2.52
9195 12623 0.611200 TCGCGGAAGAAAGGGAATCA 59.389 50.000 6.13 0.00 0.00 2.57
9196 12624 0.727398 CGCGGAAGAAAGGGAATCAC 59.273 55.000 0.00 0.00 0.00 3.06
9197 12625 1.821216 GCGGAAGAAAGGGAATCACA 58.179 50.000 0.00 0.00 0.00 3.58
9198 12626 2.159382 GCGGAAGAAAGGGAATCACAA 58.841 47.619 0.00 0.00 0.00 3.33
9199 12627 2.162408 GCGGAAGAAAGGGAATCACAAG 59.838 50.000 0.00 0.00 0.00 3.16
9200 12628 3.412386 CGGAAGAAAGGGAATCACAAGT 58.588 45.455 0.00 0.00 0.00 3.16
9201 12629 3.189287 CGGAAGAAAGGGAATCACAAGTG 59.811 47.826 0.00 0.00 0.00 3.16
9202 12630 3.057245 GGAAGAAAGGGAATCACAAGTGC 60.057 47.826 0.00 0.00 0.00 4.40
9203 12631 3.515602 AGAAAGGGAATCACAAGTGCT 57.484 42.857 0.00 0.00 0.00 4.40
9204 12632 4.640771 AGAAAGGGAATCACAAGTGCTA 57.359 40.909 0.00 0.00 0.00 3.49
9205 12633 5.184892 AGAAAGGGAATCACAAGTGCTAT 57.815 39.130 0.00 0.00 0.00 2.97
9206 12634 5.574188 AGAAAGGGAATCACAAGTGCTATT 58.426 37.500 0.00 0.00 0.00 1.73
9207 12635 5.416952 AGAAAGGGAATCACAAGTGCTATTG 59.583 40.000 0.00 0.62 36.22 1.90
9208 12636 4.574674 AGGGAATCACAAGTGCTATTGA 57.425 40.909 8.23 0.00 34.20 2.57
9209 12637 4.922206 AGGGAATCACAAGTGCTATTGAA 58.078 39.130 8.23 0.00 34.20 2.69
9210 12638 5.324409 AGGGAATCACAAGTGCTATTGAAA 58.676 37.500 8.23 0.00 34.20 2.69
9211 12639 5.954150 AGGGAATCACAAGTGCTATTGAAAT 59.046 36.000 8.23 0.00 34.20 2.17
9212 12640 6.438425 AGGGAATCACAAGTGCTATTGAAATT 59.562 34.615 8.23 6.98 34.20 1.82
9213 12641 6.753744 GGGAATCACAAGTGCTATTGAAATTC 59.246 38.462 8.23 13.08 35.85 2.17
9214 12642 6.753744 GGAATCACAAGTGCTATTGAAATTCC 59.246 38.462 21.25 21.25 41.60 3.01
9215 12643 5.643379 TCACAAGTGCTATTGAAATTCCC 57.357 39.130 8.23 0.00 34.20 3.97
9216 12644 4.462483 TCACAAGTGCTATTGAAATTCCCC 59.538 41.667 8.23 0.00 34.20 4.81
9217 12645 4.463891 CACAAGTGCTATTGAAATTCCCCT 59.536 41.667 8.23 0.00 34.20 4.79
9218 12646 4.463891 ACAAGTGCTATTGAAATTCCCCTG 59.536 41.667 8.23 0.00 34.20 4.45
9219 12647 4.591321 AGTGCTATTGAAATTCCCCTGA 57.409 40.909 0.00 0.00 0.00 3.86
9220 12648 5.134725 AGTGCTATTGAAATTCCCCTGAT 57.865 39.130 0.00 0.00 0.00 2.90
9221 12649 4.891756 AGTGCTATTGAAATTCCCCTGATG 59.108 41.667 0.00 0.00 0.00 3.07
9222 12650 4.038402 GTGCTATTGAAATTCCCCTGATGG 59.962 45.833 0.00 0.00 0.00 3.51
9237 12665 4.718961 CCTGATGGGATTTAGTAACCTGG 58.281 47.826 0.00 0.00 37.23 4.45
9238 12666 4.446311 CCTGATGGGATTTAGTAACCTGGG 60.446 50.000 0.00 0.00 37.23 4.45
9239 12667 4.116113 TGATGGGATTTAGTAACCTGGGT 58.884 43.478 0.00 0.00 0.00 4.51
9240 12668 4.080015 TGATGGGATTTAGTAACCTGGGTG 60.080 45.833 0.00 0.00 0.00 4.61
9241 12669 3.261962 TGGGATTTAGTAACCTGGGTGT 58.738 45.455 0.00 0.00 0.00 4.16
9242 12670 3.658705 TGGGATTTAGTAACCTGGGTGTT 59.341 43.478 0.00 0.00 0.00 3.32
9243 12671 4.263594 TGGGATTTAGTAACCTGGGTGTTC 60.264 45.833 0.00 0.00 0.00 3.18
9244 12672 4.018688 GGGATTTAGTAACCTGGGTGTTCT 60.019 45.833 0.00 0.00 0.00 3.01
9245 12673 5.516062 GGGATTTAGTAACCTGGGTGTTCTT 60.516 44.000 0.00 0.00 0.00 2.52
9246 12674 6.008331 GGATTTAGTAACCTGGGTGTTCTTT 58.992 40.000 0.00 0.00 0.00 2.52
9247 12675 6.150641 GGATTTAGTAACCTGGGTGTTCTTTC 59.849 42.308 0.00 0.00 0.00 2.62
9248 12676 3.503800 AGTAACCTGGGTGTTCTTTCC 57.496 47.619 0.00 0.00 0.00 3.13
9249 12677 2.107726 AGTAACCTGGGTGTTCTTTCCC 59.892 50.000 0.00 0.00 43.67 3.97
9250 12678 0.187606 AACCTGGGTGTTCTTTCCCC 59.812 55.000 0.00 0.00 42.80 4.81
9251 12679 1.076727 CCTGGGTGTTCTTTCCCCC 59.923 63.158 0.00 0.00 42.80 5.40
9252 12680 1.725169 CCTGGGTGTTCTTTCCCCCA 61.725 60.000 0.00 0.00 44.84 4.96
9253 12681 0.409484 CTGGGTGTTCTTTCCCCCAT 59.591 55.000 0.00 0.00 45.83 4.00
9254 12682 0.407918 TGGGTGTTCTTTCCCCCATC 59.592 55.000 0.00 0.00 42.21 3.51
9255 12683 0.407918 GGGTGTTCTTTCCCCCATCA 59.592 55.000 0.00 0.00 37.89 3.07
9256 12684 1.545841 GGTGTTCTTTCCCCCATCAC 58.454 55.000 0.00 0.00 0.00 3.06
9257 12685 1.545841 GTGTTCTTTCCCCCATCACC 58.454 55.000 0.00 0.00 0.00 4.02
9258 12686 1.153539 TGTTCTTTCCCCCATCACCA 58.846 50.000 0.00 0.00 0.00 4.17
9259 12687 1.501170 TGTTCTTTCCCCCATCACCAA 59.499 47.619 0.00 0.00 0.00 3.67
9260 12688 2.091055 TGTTCTTTCCCCCATCACCAAA 60.091 45.455 0.00 0.00 0.00 3.28
9261 12689 2.299013 GTTCTTTCCCCCATCACCAAAC 59.701 50.000 0.00 0.00 0.00 2.93
9262 12690 1.501170 TCTTTCCCCCATCACCAAACA 59.499 47.619 0.00 0.00 0.00 2.83
9263 12691 2.091055 TCTTTCCCCCATCACCAAACAA 60.091 45.455 0.00 0.00 0.00 2.83
9264 12692 2.478872 TTCCCCCATCACCAAACAAA 57.521 45.000 0.00 0.00 0.00 2.83
9265 12693 2.008242 TCCCCCATCACCAAACAAAG 57.992 50.000 0.00 0.00 0.00 2.77
9266 12694 0.321346 CCCCCATCACCAAACAAAGC 59.679 55.000 0.00 0.00 0.00 3.51
9284 12712 4.753516 AAGCCTTAGTTGCCAACTTTTT 57.246 36.364 16.40 1.23 42.81 1.94
9294 12722 9.995003 TTAGTTGCCAACTTTTTGATTGATAAT 57.005 25.926 16.40 0.00 42.81 1.28
9296 12724 8.149647 AGTTGCCAACTTTTTGATTGATAATGA 58.850 29.630 3.74 0.00 39.04 2.57
9300 12728 7.090173 CCAACTTTTTGATTGATAATGACGGT 58.910 34.615 0.00 0.00 34.24 4.83
9315 12743 3.937814 TGACGGTTGCTACAAATCATCT 58.062 40.909 0.00 0.00 0.00 2.90
9322 12750 5.587844 GGTTGCTACAAATCATCTGACTGAT 59.412 40.000 0.00 0.00 37.47 2.90
9323 12751 6.094603 GGTTGCTACAAATCATCTGACTGATT 59.905 38.462 0.00 8.54 45.48 2.57
9330 12758 3.920231 TCATCTGACTGATTTCCTGGG 57.080 47.619 0.00 0.00 32.05 4.45
9332 12760 2.342406 TCTGACTGATTTCCTGGGGA 57.658 50.000 0.00 0.00 0.00 4.81
9333 12761 2.631384 TCTGACTGATTTCCTGGGGAA 58.369 47.619 0.00 0.00 40.27 3.97
9376 12804 1.806247 CGATTCATCGTGCCTAAGCCA 60.806 52.381 0.80 0.00 44.74 4.75
9438 12866 2.435693 GCGTAGGTCCATGGCTCCT 61.436 63.158 24.53 24.53 35.60 3.69
9477 12905 1.211969 GCAGTTCACCGCTAGTCGA 59.788 57.895 7.94 0.00 41.67 4.20
9492 12920 0.640768 GTCGATGACAGTAGCAACGC 59.359 55.000 0.00 0.00 32.55 4.84
9611 13039 0.748729 TGGCTGATGATGCGATGCAA 60.749 50.000 0.00 0.00 43.62 4.08
9619 13047 0.374758 GATGCGATGCAACACACGAT 59.625 50.000 0.00 0.00 43.62 3.73
9626 13054 2.603247 GCAACACACGATGACGGCA 61.603 57.895 0.00 0.00 44.46 5.69
9629 13057 0.812014 AACACACGATGACGGCAACA 60.812 50.000 0.00 0.00 44.46 3.33
9637 13065 2.665185 GACGGCAACAGAAGCGGT 60.665 61.111 0.00 0.00 46.29 5.68
9641 13069 1.891919 GGCAACAGAAGCGGTGACA 60.892 57.895 0.00 0.00 0.00 3.58
9646 13074 3.923864 AGAAGCGGTGACACGGCA 61.924 61.111 31.85 0.00 45.45 5.69
9701 13129 2.827642 GACCATGGCTGGAGCTGC 60.828 66.667 13.04 0.00 46.37 5.25
9706 13134 1.035385 CATGGCTGGAGCTGCAATGA 61.035 55.000 9.92 0.00 40.60 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 80 1.845809 GACGTGTACCAGTCGTCCGT 61.846 60.000 14.47 0.00 45.08 4.69
121 143 1.964373 CACCCACCTCGAAAACCCG 60.964 63.158 0.00 0.00 0.00 5.28
138 161 3.806521 CGAATTTGACCAATTTTGCCACA 59.193 39.130 0.00 0.00 35.02 4.17
177 200 2.038952 CTCCCATCATCTCCGCCATTTA 59.961 50.000 0.00 0.00 0.00 1.40
184 207 1.415659 AGCTTTCTCCCATCATCTCCG 59.584 52.381 0.00 0.00 0.00 4.63
215 238 1.976404 TCCATGGATTTGCTTTGCCAA 59.024 42.857 11.44 0.00 33.51 4.52
297 328 4.672899 TCTTCCCCAATTTCGAAAATCCT 58.327 39.130 15.66 0.00 0.00 3.24
357 389 4.816385 AGCCATGTTGATCACGTATTTAGG 59.184 41.667 0.00 0.00 0.00 2.69
420 454 2.009774 CCGCTCCAATCGTGAAAGATT 58.990 47.619 0.00 0.00 41.12 2.40
522 580 9.355215 GTATCTCTTTGTGTTTCGAGAATCTAA 57.645 33.333 0.00 0.00 36.26 2.10
561 622 3.520317 ACCCCATGTATCGTCCTTTGTTA 59.480 43.478 0.00 0.00 0.00 2.41
579 640 2.537143 TGGAGAAGAACTAGTGACCCC 58.463 52.381 0.00 0.00 0.00 4.95
640 706 4.202161 GCCTCATCGAAGAAGATCCACTTA 60.202 45.833 0.00 0.00 43.58 2.24
658 728 0.035725 TAAGAGAGACCGTCGCCTCA 60.036 55.000 19.35 4.36 32.07 3.86
677 747 1.499438 TCCATCCGGATCTACTCCACT 59.501 52.381 15.88 0.00 45.24 4.00
735 807 7.018049 CCTCATCCTCCCTTTTTCTAGGATTAT 59.982 40.741 0.00 0.00 44.65 1.28
739 811 4.040755 CCTCATCCTCCCTTTTTCTAGGA 58.959 47.826 0.00 0.00 42.17 2.94
748 820 7.549141 ACTATAAATAGACCTCATCCTCCCTT 58.451 38.462 4.02 0.00 34.50 3.95
757 829 9.781633 GTGACTCTAGACTATAAATAGACCTCA 57.218 37.037 4.02 0.00 34.50 3.86
834 909 3.276642 TTCGGTTAAGCCCAGCCCC 62.277 63.158 0.00 0.00 0.00 5.80
835 910 2.044555 GTTCGGTTAAGCCCAGCCC 61.045 63.158 0.00 0.00 0.00 5.19
836 911 0.891904 TTGTTCGGTTAAGCCCAGCC 60.892 55.000 0.00 0.00 0.00 4.85
837 912 0.521735 CTTGTTCGGTTAAGCCCAGC 59.478 55.000 0.00 0.00 0.00 4.85
838 913 1.165270 CCTTGTTCGGTTAAGCCCAG 58.835 55.000 0.00 0.00 0.00 4.45
839 914 0.891904 GCCTTGTTCGGTTAAGCCCA 60.892 55.000 0.00 0.00 0.00 5.36
840 915 1.592400 GGCCTTGTTCGGTTAAGCCC 61.592 60.000 0.00 0.00 0.00 5.19
841 916 0.608308 AGGCCTTGTTCGGTTAAGCC 60.608 55.000 0.00 0.00 0.00 4.35
842 917 1.244816 AAGGCCTTGTTCGGTTAAGC 58.755 50.000 19.73 0.00 0.00 3.09
843 918 3.435671 CAGTAAGGCCTTGTTCGGTTAAG 59.564 47.826 28.77 2.26 0.00 1.85
844 919 3.071312 TCAGTAAGGCCTTGTTCGGTTAA 59.929 43.478 28.77 0.77 0.00 2.01
845 920 2.633967 TCAGTAAGGCCTTGTTCGGTTA 59.366 45.455 28.77 1.62 0.00 2.85
846 921 1.418637 TCAGTAAGGCCTTGTTCGGTT 59.581 47.619 28.77 0.57 0.00 4.44
847 922 1.053424 TCAGTAAGGCCTTGTTCGGT 58.947 50.000 28.77 1.45 0.00 4.69
871 946 0.977395 GCTGTAACCCACCAGTCTCT 59.023 55.000 0.00 0.00 0.00 3.10
884 959 1.340991 GGAATGGGCCTGAAGCTGTAA 60.341 52.381 4.53 0.00 43.05 2.41
966 1041 2.452505 GCAACTCTAGGTCAGGACTCT 58.547 52.381 0.00 0.00 0.00 3.24
1236 1326 1.150081 GCTGGATAGGCTGGTGCAT 59.850 57.895 0.00 0.00 41.91 3.96
1423 1513 2.851195 AGGTACACTCTTTGCAACCTG 58.149 47.619 0.00 0.00 41.37 4.00
1494 1584 1.079127 AAGCTAATCAGGCGCACGT 60.079 52.632 10.83 0.00 34.52 4.49
1712 1803 3.000727 GACCGTGTCCATACCTTTTCAG 58.999 50.000 0.00 0.00 0.00 3.02
9180 12608 3.057245 GCACTTGTGATTCCCTTTCTTCC 60.057 47.826 4.79 0.00 0.00 3.46
9181 12609 3.823304 AGCACTTGTGATTCCCTTTCTTC 59.177 43.478 4.79 0.00 0.00 2.87
9182 12610 3.837355 AGCACTTGTGATTCCCTTTCTT 58.163 40.909 4.79 0.00 0.00 2.52
9183 12611 3.515602 AGCACTTGTGATTCCCTTTCT 57.484 42.857 4.79 0.00 0.00 2.52
9184 12612 5.415701 TCAATAGCACTTGTGATTCCCTTTC 59.584 40.000 4.79 0.00 0.00 2.62
9185 12613 5.324409 TCAATAGCACTTGTGATTCCCTTT 58.676 37.500 4.79 0.00 0.00 3.11
9186 12614 4.922206 TCAATAGCACTTGTGATTCCCTT 58.078 39.130 4.79 0.00 0.00 3.95
9187 12615 4.574674 TCAATAGCACTTGTGATTCCCT 57.425 40.909 4.79 0.00 0.00 4.20
9188 12616 5.643379 TTTCAATAGCACTTGTGATTCCC 57.357 39.130 4.79 0.00 0.00 3.97
9189 12617 6.753744 GGAATTTCAATAGCACTTGTGATTCC 59.246 38.462 19.43 19.43 39.06 3.01
9190 12618 6.753744 GGGAATTTCAATAGCACTTGTGATTC 59.246 38.462 4.79 13.90 33.23 2.52
9191 12619 6.351286 GGGGAATTTCAATAGCACTTGTGATT 60.351 38.462 4.79 0.00 0.00 2.57
9192 12620 5.127682 GGGGAATTTCAATAGCACTTGTGAT 59.872 40.000 4.79 0.31 0.00 3.06
9193 12621 4.462483 GGGGAATTTCAATAGCACTTGTGA 59.538 41.667 4.79 0.00 0.00 3.58
9194 12622 4.463891 AGGGGAATTTCAATAGCACTTGTG 59.536 41.667 0.00 0.00 0.00 3.33
9195 12623 4.463891 CAGGGGAATTTCAATAGCACTTGT 59.536 41.667 0.00 0.00 0.00 3.16
9196 12624 4.706476 TCAGGGGAATTTCAATAGCACTTG 59.294 41.667 0.00 0.00 0.00 3.16
9197 12625 4.934356 TCAGGGGAATTTCAATAGCACTT 58.066 39.130 0.00 0.00 0.00 3.16
9198 12626 4.591321 TCAGGGGAATTTCAATAGCACT 57.409 40.909 0.00 0.00 0.00 4.40
9199 12627 4.038402 CCATCAGGGGAATTTCAATAGCAC 59.962 45.833 0.00 0.00 0.00 4.40
9200 12628 4.217510 CCATCAGGGGAATTTCAATAGCA 58.782 43.478 0.00 0.00 0.00 3.49
9201 12629 4.861102 CCATCAGGGGAATTTCAATAGC 57.139 45.455 0.00 0.00 0.00 2.97
9215 12643 4.446311 CCCAGGTTACTAAATCCCATCAGG 60.446 50.000 0.00 0.00 0.00 3.86
9216 12644 4.166144 ACCCAGGTTACTAAATCCCATCAG 59.834 45.833 0.00 0.00 0.00 2.90
9217 12645 4.080015 CACCCAGGTTACTAAATCCCATCA 60.080 45.833 0.00 0.00 0.00 3.07
9218 12646 4.079958 ACACCCAGGTTACTAAATCCCATC 60.080 45.833 0.00 0.00 0.00 3.51
9219 12647 3.856206 ACACCCAGGTTACTAAATCCCAT 59.144 43.478 0.00 0.00 0.00 4.00
9220 12648 3.261962 ACACCCAGGTTACTAAATCCCA 58.738 45.455 0.00 0.00 0.00 4.37
9221 12649 4.018688 AGAACACCCAGGTTACTAAATCCC 60.019 45.833 0.00 0.00 0.00 3.85
9222 12650 5.175388 AGAACACCCAGGTTACTAAATCC 57.825 43.478 0.00 0.00 0.00 3.01
9223 12651 6.150641 GGAAAGAACACCCAGGTTACTAAATC 59.849 42.308 0.00 0.00 0.00 2.17
9224 12652 6.008331 GGAAAGAACACCCAGGTTACTAAAT 58.992 40.000 0.00 0.00 0.00 1.40
9225 12653 5.379187 GGAAAGAACACCCAGGTTACTAAA 58.621 41.667 0.00 0.00 0.00 1.85
9226 12654 4.202493 GGGAAAGAACACCCAGGTTACTAA 60.202 45.833 0.00 0.00 44.96 2.24
9227 12655 3.328637 GGGAAAGAACACCCAGGTTACTA 59.671 47.826 0.00 0.00 44.96 1.82
9228 12656 2.107726 GGGAAAGAACACCCAGGTTACT 59.892 50.000 0.00 0.00 44.96 2.24
9229 12657 2.511659 GGGAAAGAACACCCAGGTTAC 58.488 52.381 0.00 0.00 44.96 2.50
9230 12658 2.963599 GGGAAAGAACACCCAGGTTA 57.036 50.000 0.00 0.00 44.96 2.85
9231 12659 3.842069 GGGAAAGAACACCCAGGTT 57.158 52.632 0.00 0.00 44.96 3.50
9237 12665 1.545841 GTGATGGGGGAAAGAACACC 58.454 55.000 0.00 0.00 0.00 4.16
9238 12666 1.203001 TGGTGATGGGGGAAAGAACAC 60.203 52.381 0.00 0.00 0.00 3.32
9239 12667 1.153539 TGGTGATGGGGGAAAGAACA 58.846 50.000 0.00 0.00 0.00 3.18
9240 12668 2.299013 GTTTGGTGATGGGGGAAAGAAC 59.701 50.000 0.00 0.00 0.00 3.01
9241 12669 2.091055 TGTTTGGTGATGGGGGAAAGAA 60.091 45.455 0.00 0.00 0.00 2.52
9242 12670 1.501170 TGTTTGGTGATGGGGGAAAGA 59.499 47.619 0.00 0.00 0.00 2.52
9243 12671 2.008242 TGTTTGGTGATGGGGGAAAG 57.992 50.000 0.00 0.00 0.00 2.62
9244 12672 2.478872 TTGTTTGGTGATGGGGGAAA 57.521 45.000 0.00 0.00 0.00 3.13
9245 12673 2.324541 CTTTGTTTGGTGATGGGGGAA 58.675 47.619 0.00 0.00 0.00 3.97
9246 12674 2.008242 CTTTGTTTGGTGATGGGGGA 57.992 50.000 0.00 0.00 0.00 4.81
9247 12675 0.321346 GCTTTGTTTGGTGATGGGGG 59.679 55.000 0.00 0.00 0.00 5.40
9248 12676 0.321346 GGCTTTGTTTGGTGATGGGG 59.679 55.000 0.00 0.00 0.00 4.96
9249 12677 1.341080 AGGCTTTGTTTGGTGATGGG 58.659 50.000 0.00 0.00 0.00 4.00
9250 12678 3.573967 ACTAAGGCTTTGTTTGGTGATGG 59.426 43.478 4.45 0.00 0.00 3.51
9251 12679 4.853924 ACTAAGGCTTTGTTTGGTGATG 57.146 40.909 4.45 0.00 0.00 3.07
9252 12680 4.501400 GCAACTAAGGCTTTGTTTGGTGAT 60.501 41.667 21.57 0.00 0.00 3.06
9253 12681 3.181480 GCAACTAAGGCTTTGTTTGGTGA 60.181 43.478 21.57 0.00 0.00 4.02
9254 12682 3.123050 GCAACTAAGGCTTTGTTTGGTG 58.877 45.455 21.57 13.76 0.00 4.17
9255 12683 2.102420 GGCAACTAAGGCTTTGTTTGGT 59.898 45.455 21.57 1.49 0.00 3.67
9256 12684 2.102252 TGGCAACTAAGGCTTTGTTTGG 59.898 45.455 21.57 13.89 37.61 3.28
9257 12685 3.451141 TGGCAACTAAGGCTTTGTTTG 57.549 42.857 21.57 17.43 37.61 2.93
9258 12686 3.450817 AGTTGGCAACTAAGGCTTTGTTT 59.549 39.130 30.31 6.39 40.69 2.83
9259 12687 3.031013 AGTTGGCAACTAAGGCTTTGTT 58.969 40.909 30.31 19.07 40.69 2.83
9260 12688 2.666317 AGTTGGCAACTAAGGCTTTGT 58.334 42.857 30.31 6.82 40.69 2.83
9261 12689 3.733443 AAGTTGGCAACTAAGGCTTTG 57.267 42.857 31.34 6.02 41.91 2.77
9262 12690 4.753516 AAAAGTTGGCAACTAAGGCTTT 57.246 36.364 31.34 23.30 41.91 3.51
9263 12691 4.161377 TCAAAAAGTTGGCAACTAAGGCTT 59.839 37.500 31.34 19.13 41.91 4.35
9264 12692 3.704061 TCAAAAAGTTGGCAACTAAGGCT 59.296 39.130 31.34 14.18 41.91 4.58
9265 12693 4.053469 TCAAAAAGTTGGCAACTAAGGC 57.947 40.909 31.34 4.13 41.91 4.35
9266 12694 6.279882 TCAATCAAAAAGTTGGCAACTAAGG 58.720 36.000 31.34 20.44 41.91 2.69
9284 12712 5.423886 TGTAGCAACCGTCATTATCAATCA 58.576 37.500 0.00 0.00 0.00 2.57
9294 12722 3.684305 CAGATGATTTGTAGCAACCGTCA 59.316 43.478 0.00 0.00 0.00 4.35
9296 12724 3.684788 GTCAGATGATTTGTAGCAACCGT 59.315 43.478 0.00 0.00 0.00 4.83
9323 12751 0.618458 CCGACTGATTTCCCCAGGAA 59.382 55.000 0.00 0.00 40.27 3.36
9324 12752 1.271840 CCCGACTGATTTCCCCAGGA 61.272 60.000 0.00 0.00 36.03 3.86
9327 12755 0.838554 TGACCCGACTGATTTCCCCA 60.839 55.000 0.00 0.00 0.00 4.96
9328 12756 0.107654 CTGACCCGACTGATTTCCCC 60.108 60.000 0.00 0.00 0.00 4.81
9329 12757 0.613777 ACTGACCCGACTGATTTCCC 59.386 55.000 0.00 0.00 0.00 3.97
9330 12758 2.738964 GCTACTGACCCGACTGATTTCC 60.739 54.545 0.00 0.00 0.00 3.13
9332 12760 1.207329 GGCTACTGACCCGACTGATTT 59.793 52.381 0.00 0.00 0.00 2.17
9333 12761 0.824759 GGCTACTGACCCGACTGATT 59.175 55.000 0.00 0.00 0.00 2.57
9334 12762 2.506065 GGCTACTGACCCGACTGAT 58.494 57.895 0.00 0.00 0.00 2.90
9376 12804 1.089920 GCAGCGTTGACCAATCTGAT 58.910 50.000 2.38 0.00 0.00 2.90
9438 12866 0.472471 ACTTGTGCTCGGGGAAGAAA 59.528 50.000 0.00 0.00 0.00 2.52
9477 12905 1.447838 CCGGCGTTGCTACTGTCAT 60.448 57.895 6.01 0.00 0.00 3.06
9512 12940 2.586079 CGCTTCCATCGCCATCGT 60.586 61.111 0.00 0.00 36.96 3.73
9563 12991 2.103538 TGCTAATCCGTCGTCGCC 59.896 61.111 0.00 0.00 35.54 5.54
9571 12999 2.813179 GCTGCCGTGTGCTAATCCG 61.813 63.158 0.00 0.00 42.00 4.18
9592 13020 0.748729 TTGCATCGCATCATCAGCCA 60.749 50.000 0.00 0.00 38.76 4.75
9601 13029 0.097499 CATCGTGTGTTGCATCGCAT 59.903 50.000 13.74 0.00 38.76 4.73
9611 13039 1.221466 CTGTTGCCGTCATCGTGTGT 61.221 55.000 0.00 0.00 35.01 3.72
9619 13047 2.664851 CCGCTTCTGTTGCCGTCA 60.665 61.111 0.00 0.00 0.00 4.35
9626 13054 1.594293 CCGTGTCACCGCTTCTGTT 60.594 57.895 0.00 0.00 0.00 3.16
9629 13057 3.923864 TGCCGTGTCACCGCTTCT 61.924 61.111 15.76 0.00 0.00 2.85
9637 13065 4.164087 AACCACCGTGCCGTGTCA 62.164 61.111 0.00 0.00 31.47 3.58
9641 13069 3.931247 TAGCAACCACCGTGCCGT 61.931 61.111 0.00 0.00 43.27 5.68
9666 13094 3.712881 GCCGTGTGTTGAGCCGTC 61.713 66.667 0.00 0.00 0.00 4.79
9693 13121 2.693762 GCGCTTCATTGCAGCTCCA 61.694 57.895 0.00 0.00 34.88 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.