Multiple sequence alignment - TraesCS2A01G237500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G237500 chr2A 100.000 5947 0 0 1 5947 312314121 312320067 0.000000e+00 10983.0
1 TraesCS2A01G237500 chr2A 95.652 46 2 0 5402 5447 312319464 312319509 2.300000e-09 75.0
2 TraesCS2A01G237500 chr2A 95.652 46 2 0 5344 5389 312319522 312319567 2.300000e-09 75.0
3 TraesCS2A01G237500 chr2D 96.591 2640 40 18 586 3177 228437304 228434667 0.000000e+00 4331.0
4 TraesCS2A01G237500 chr2D 97.271 1942 42 6 3136 5073 228434665 228432731 0.000000e+00 3282.0
5 TraesCS2A01G237500 chr2D 93.985 532 31 1 5412 5943 228430006 228429476 0.000000e+00 804.0
6 TraesCS2A01G237500 chr2D 87.709 358 10 13 5090 5420 228432750 228432400 2.600000e-103 387.0
7 TraesCS2A01G237500 chr2D 81.675 191 22 8 4030 4218 82395344 82395523 4.800000e-31 147.0
8 TraesCS2A01G237500 chr2D 77.928 222 35 6 373 583 459956485 459956703 6.260000e-25 126.0
9 TraesCS2A01G237500 chr2D 80.226 177 21 3 3061 3233 195292174 195292340 2.910000e-23 121.0
10 TraesCS2A01G237500 chrUn 96.814 2166 44 8 752 2893 156531075 156528911 0.000000e+00 3594.0
11 TraesCS2A01G237500 chrUn 95.127 2134 72 8 2940 5068 156526928 156524822 0.000000e+00 3336.0
12 TraesCS2A01G237500 chrUn 87.239 431 36 8 5518 5947 156522899 156522487 1.940000e-129 473.0
13 TraesCS2A01G237500 chrUn 87.838 148 10 2 586 725 156531286 156531139 3.690000e-37 167.0
14 TraesCS2A01G237500 chrUn 93.617 94 6 0 5440 5533 156524217 156524124 2.230000e-29 141.0
15 TraesCS2A01G237500 chrUn 90.000 100 5 3 5340 5438 156524425 156524330 2.250000e-24 124.0
16 TraesCS2A01G237500 chrUn 92.857 70 5 0 5093 5162 156524836 156524767 1.050000e-17 102.0
17 TraesCS2A01G237500 chrUn 98.113 53 1 0 2893 2945 156528889 156528837 6.350000e-15 93.5
18 TraesCS2A01G237500 chr1D 92.994 157 10 1 1 157 308566361 308566206 1.670000e-55 228.0
19 TraesCS2A01G237500 chr1D 89.189 74 7 1 3573 3646 404066306 404066378 2.280000e-14 91.6
20 TraesCS2A01G237500 chr1D 95.000 40 1 1 3170 3208 162053332 162053371 1.790000e-05 62.1
21 TraesCS2A01G237500 chr7A 84.103 195 23 8 323 513 609295784 609295974 1.320000e-41 182.0
22 TraesCS2A01G237500 chr3B 78.491 265 38 13 334 583 267001872 267001612 7.980000e-34 156.0
23 TraesCS2A01G237500 chr3B 81.443 194 23 9 4030 4221 614717958 614717776 4.800000e-31 147.0
24 TraesCS2A01G237500 chr3B 82.836 134 23 0 449 582 146788348 146788215 2.910000e-23 121.0
25 TraesCS2A01G237500 chr3D 82.873 181 19 5 4034 4211 410671168 410671339 1.030000e-32 152.0
26 TraesCS2A01G237500 chr3D 90.769 65 3 1 3591 3652 564316223 564316159 3.820000e-12 84.2
27 TraesCS2A01G237500 chr7D 81.633 196 18 12 4030 4221 472852940 472852759 4.800000e-31 147.0
28 TraesCS2A01G237500 chr7D 80.402 199 26 9 4030 4226 128266341 128266528 8.040000e-29 139.0
29 TraesCS2A01G237500 chr6A 80.928 194 24 9 4030 4221 414189515 414189697 2.230000e-29 141.0
30 TraesCS2A01G237500 chr6A 81.928 166 20 7 427 584 522032627 522032790 1.340000e-26 132.0
31 TraesCS2A01G237500 chr6A 94.915 59 3 0 3588 3646 104308550 104308492 6.350000e-15 93.5
32 TraesCS2A01G237500 chr2B 80.928 194 24 8 4030 4221 371059928 371059746 2.230000e-29 141.0
33 TraesCS2A01G237500 chr2B 87.500 56 6 1 3108 3162 283176123 283176068 4.980000e-06 63.9
34 TraesCS2A01G237500 chr4A 78.509 228 30 11 373 583 714329835 714330060 1.340000e-26 132.0
35 TraesCS2A01G237500 chr4A 82.222 135 22 1 451 583 420534860 420534994 1.350000e-21 115.0
36 TraesCS2A01G237500 chr5A 83.803 142 17 3 3072 3213 246834593 246834458 4.840000e-26 130.0
37 TraesCS2A01G237500 chr3A 82.979 141 21 2 446 583 383357885 383358025 2.250000e-24 124.0
38 TraesCS2A01G237500 chr3A 81.690 142 22 3 446 584 389136387 389136247 1.350000e-21 115.0
39 TraesCS2A01G237500 chr5D 81.560 141 22 3 446 583 501410012 501410151 4.870000e-21 113.0
40 TraesCS2A01G237500 chr5D 92.308 65 3 1 3582 3646 469062744 469062806 2.280000e-14 91.6
41 TraesCS2A01G237500 chr5D 91.803 61 4 1 1 61 527815215 527815274 3.820000e-12 84.2
42 TraesCS2A01G237500 chr6D 94.915 59 3 0 3588 3646 86643297 86643239 6.350000e-15 93.5
43 TraesCS2A01G237500 chr6D 94.915 59 1 1 3588 3646 317011514 317011458 2.280000e-14 91.6
44 TraesCS2A01G237500 chr7B 91.803 61 3 1 3588 3646 165708287 165708227 3.820000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G237500 chr2A 312314121 312320067 5946 False 3711.0000 10983 97.101333 1 5947 3 chr2A.!!$F1 5946
1 TraesCS2A01G237500 chr2D 228429476 228437304 7828 True 2201.0000 4331 93.889000 586 5943 4 chr2D.!!$R1 5357
2 TraesCS2A01G237500 chrUn 156522487 156531286 8799 True 1003.8125 3594 92.700625 586 5947 8 chrUn.!!$R1 5361

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.036010 AGTTGGTTGATGCGGAGGAG 60.036 55.0 0.00 0.0 0.00 3.69 F
119 120 0.103208 CGAGGCAGGTAGTAGCAAGG 59.897 60.0 1.58 0.0 0.00 3.61 F
424 425 0.107654 GGCAGCGAAAGACTATGGGT 60.108 55.0 0.00 0.0 0.00 4.51 F
843 915 0.391793 GCCCGATAGATAGGCAAGGC 60.392 60.0 0.00 0.0 46.34 4.35 F
2655 2730 0.550914 ACCACAAAACTGCCTCCAGA 59.449 50.0 0.00 0.0 41.77 3.86 F
3593 5651 0.896923 GTTTGCCATGCATTCCCTCA 59.103 50.0 0.00 0.0 38.76 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2095 1.186200 CATCGAACCCCTCACTCTCA 58.814 55.000 0.0 0.0 0.00 3.27 R
2355 2430 9.559958 GTTTAGTTTGTACATTTGATGGAGATG 57.440 33.333 0.0 0.0 33.60 2.90 R
2655 2730 5.299531 GCTCTTACCTTGACTGGAAAAGTTT 59.700 40.000 0.0 0.0 40.07 2.66 R
2981 4992 6.095432 AGTATCCACATGAATCTACAGAGC 57.905 41.667 0.0 0.0 0.00 4.09 R
4197 6255 0.401356 TTCTTCACATGAGGCTGGCA 59.599 50.000 0.0 0.0 0.00 4.92 R
5754 11799 0.106149 ACCCGATTAGGCCGCTTAAG 59.894 55.000 0.0 0.0 39.21 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.759828 GCGTCGTCGAACGGGTTG 61.760 66.667 11.30 0.19 42.81 3.77
20 21 3.101428 CGTCGTCGAACGGGTTGG 61.101 66.667 0.00 0.00 42.81 3.77
21 22 2.336088 GTCGTCGAACGGGTTGGA 59.664 61.111 0.00 0.00 42.81 3.53
22 23 1.731969 GTCGTCGAACGGGTTGGAG 60.732 63.158 0.00 0.00 42.81 3.86
23 24 2.195567 TCGTCGAACGGGTTGGAGT 61.196 57.895 0.00 0.00 42.81 3.85
24 25 1.300388 CGTCGAACGGGTTGGAGTT 60.300 57.895 0.00 0.00 38.08 3.01
25 26 1.554042 CGTCGAACGGGTTGGAGTTG 61.554 60.000 0.00 0.00 38.08 3.16
26 27 1.070105 TCGAACGGGTTGGAGTTGG 59.930 57.895 0.00 0.00 0.00 3.77
27 28 1.227734 CGAACGGGTTGGAGTTGGT 60.228 57.895 0.00 0.00 0.00 3.67
28 29 0.816421 CGAACGGGTTGGAGTTGGTT 60.816 55.000 0.00 0.00 0.00 3.67
29 30 0.666374 GAACGGGTTGGAGTTGGTTG 59.334 55.000 0.00 0.00 0.00 3.77
30 31 0.256464 AACGGGTTGGAGTTGGTTGA 59.744 50.000 0.00 0.00 0.00 3.18
31 32 0.476771 ACGGGTTGGAGTTGGTTGAT 59.523 50.000 0.00 0.00 0.00 2.57
32 33 0.881118 CGGGTTGGAGTTGGTTGATG 59.119 55.000 0.00 0.00 0.00 3.07
33 34 0.603065 GGGTTGGAGTTGGTTGATGC 59.397 55.000 0.00 0.00 0.00 3.91
34 35 0.240945 GGTTGGAGTTGGTTGATGCG 59.759 55.000 0.00 0.00 0.00 4.73
35 36 0.240945 GTTGGAGTTGGTTGATGCGG 59.759 55.000 0.00 0.00 0.00 5.69
36 37 0.109532 TTGGAGTTGGTTGATGCGGA 59.890 50.000 0.00 0.00 0.00 5.54
37 38 0.321564 TGGAGTTGGTTGATGCGGAG 60.322 55.000 0.00 0.00 0.00 4.63
38 39 1.026718 GGAGTTGGTTGATGCGGAGG 61.027 60.000 0.00 0.00 0.00 4.30
39 40 0.036388 GAGTTGGTTGATGCGGAGGA 60.036 55.000 0.00 0.00 0.00 3.71
40 41 0.036010 AGTTGGTTGATGCGGAGGAG 60.036 55.000 0.00 0.00 0.00 3.69
41 42 1.026718 GTTGGTTGATGCGGAGGAGG 61.027 60.000 0.00 0.00 0.00 4.30
42 43 1.488705 TTGGTTGATGCGGAGGAGGT 61.489 55.000 0.00 0.00 0.00 3.85
43 44 1.450312 GGTTGATGCGGAGGAGGTG 60.450 63.158 0.00 0.00 0.00 4.00
44 45 1.596934 GTTGATGCGGAGGAGGTGA 59.403 57.895 0.00 0.00 0.00 4.02
45 46 0.741221 GTTGATGCGGAGGAGGTGAC 60.741 60.000 0.00 0.00 0.00 3.67
46 47 2.105128 GATGCGGAGGAGGTGACG 59.895 66.667 0.00 0.00 0.00 4.35
47 48 3.432051 GATGCGGAGGAGGTGACGG 62.432 68.421 0.00 0.00 0.00 4.79
48 49 3.957435 ATGCGGAGGAGGTGACGGA 62.957 63.158 0.00 0.00 0.00 4.69
49 50 3.148279 GCGGAGGAGGTGACGGAT 61.148 66.667 0.00 0.00 0.00 4.18
50 51 2.808315 CGGAGGAGGTGACGGATG 59.192 66.667 0.00 0.00 0.00 3.51
51 52 1.753078 CGGAGGAGGTGACGGATGA 60.753 63.158 0.00 0.00 0.00 2.92
52 53 1.817209 GGAGGAGGTGACGGATGAC 59.183 63.158 0.00 0.00 0.00 3.06
53 54 0.970937 GGAGGAGGTGACGGATGACA 60.971 60.000 0.00 0.00 0.00 3.58
54 55 1.115467 GAGGAGGTGACGGATGACAT 58.885 55.000 0.00 0.00 0.00 3.06
55 56 0.826715 AGGAGGTGACGGATGACATG 59.173 55.000 0.00 0.00 0.00 3.21
56 57 0.179073 GGAGGTGACGGATGACATGG 60.179 60.000 0.00 0.00 0.00 3.66
57 58 0.811616 GAGGTGACGGATGACATGGC 60.812 60.000 0.00 0.00 0.00 4.40
58 59 2.173669 GGTGACGGATGACATGGCG 61.174 63.158 0.00 0.00 0.00 5.69
59 60 1.153647 GTGACGGATGACATGGCGA 60.154 57.895 0.00 0.00 0.00 5.54
60 61 1.141665 TGACGGATGACATGGCGAG 59.858 57.895 0.00 0.00 0.00 5.03
61 62 1.319614 TGACGGATGACATGGCGAGA 61.320 55.000 0.00 0.00 0.00 4.04
62 63 0.596083 GACGGATGACATGGCGAGAG 60.596 60.000 0.00 0.00 0.00 3.20
63 64 1.323271 ACGGATGACATGGCGAGAGT 61.323 55.000 0.00 0.00 0.00 3.24
64 65 0.873312 CGGATGACATGGCGAGAGTG 60.873 60.000 0.00 0.00 0.00 3.51
65 66 0.531532 GGATGACATGGCGAGAGTGG 60.532 60.000 0.00 0.00 0.00 4.00
66 67 0.531532 GATGACATGGCGAGAGTGGG 60.532 60.000 0.00 0.00 0.00 4.61
67 68 0.977627 ATGACATGGCGAGAGTGGGA 60.978 55.000 0.00 0.00 0.00 4.37
68 69 1.153549 GACATGGCGAGAGTGGGAC 60.154 63.158 0.00 0.00 0.00 4.46
69 70 2.202797 CATGGCGAGAGTGGGACG 60.203 66.667 0.00 0.00 0.00 4.79
70 71 3.461773 ATGGCGAGAGTGGGACGG 61.462 66.667 0.00 0.00 0.00 4.79
73 74 4.500116 GCGAGAGTGGGACGGCTC 62.500 72.222 0.00 0.00 34.13 4.70
74 75 4.180946 CGAGAGTGGGACGGCTCG 62.181 72.222 0.00 0.00 39.80 5.03
75 76 3.827898 GAGAGTGGGACGGCTCGG 61.828 72.222 0.00 0.00 37.87 4.63
95 96 4.681978 GCTCGGGTGTGACGGCTT 62.682 66.667 0.00 0.00 0.00 4.35
96 97 2.030562 CTCGGGTGTGACGGCTTT 59.969 61.111 0.00 0.00 0.00 3.51
97 98 2.280524 TCGGGTGTGACGGCTTTG 60.281 61.111 0.00 0.00 0.00 2.77
98 99 3.353836 CGGGTGTGACGGCTTTGG 61.354 66.667 0.00 0.00 0.00 3.28
99 100 2.983592 GGGTGTGACGGCTTTGGG 60.984 66.667 0.00 0.00 0.00 4.12
100 101 3.670377 GGTGTGACGGCTTTGGGC 61.670 66.667 0.00 0.00 40.90 5.36
110 111 2.668632 CTTTGGGCGAGGCAGGTA 59.331 61.111 0.00 0.00 0.00 3.08
111 112 1.450312 CTTTGGGCGAGGCAGGTAG 60.450 63.158 0.00 0.00 0.00 3.18
112 113 2.185310 CTTTGGGCGAGGCAGGTAGT 62.185 60.000 0.00 0.00 0.00 2.73
113 114 0.905809 TTTGGGCGAGGCAGGTAGTA 60.906 55.000 0.00 0.00 0.00 1.82
114 115 1.327690 TTGGGCGAGGCAGGTAGTAG 61.328 60.000 0.00 0.00 0.00 2.57
115 116 2.417936 GGCGAGGCAGGTAGTAGC 59.582 66.667 0.00 0.00 0.00 3.58
116 117 2.423898 GGCGAGGCAGGTAGTAGCA 61.424 63.158 1.58 0.00 0.00 3.49
117 118 1.515954 GCGAGGCAGGTAGTAGCAA 59.484 57.895 1.58 0.00 0.00 3.91
118 119 0.528684 GCGAGGCAGGTAGTAGCAAG 60.529 60.000 1.58 0.00 0.00 4.01
119 120 0.103208 CGAGGCAGGTAGTAGCAAGG 59.897 60.000 1.58 0.00 0.00 3.61
120 121 0.179070 GAGGCAGGTAGTAGCAAGGC 60.179 60.000 1.58 6.23 0.00 4.35
121 122 1.521681 GGCAGGTAGTAGCAAGGCG 60.522 63.158 1.58 0.00 0.00 5.52
122 123 1.218316 GCAGGTAGTAGCAAGGCGT 59.782 57.895 1.58 0.00 0.00 5.68
123 124 1.084370 GCAGGTAGTAGCAAGGCGTG 61.084 60.000 1.58 0.00 0.00 5.34
124 125 0.460284 CAGGTAGTAGCAAGGCGTGG 60.460 60.000 1.91 0.00 0.00 4.94
125 126 1.814169 GGTAGTAGCAAGGCGTGGC 60.814 63.158 0.00 0.00 0.00 5.01
126 127 1.079405 GTAGTAGCAAGGCGTGGCA 60.079 57.895 8.76 0.00 0.00 4.92
127 128 1.084370 GTAGTAGCAAGGCGTGGCAG 61.084 60.000 8.76 0.00 0.00 4.85
128 129 2.852495 TAGTAGCAAGGCGTGGCAGC 62.852 60.000 8.76 0.00 0.00 5.25
146 147 2.890474 GACGGGCGATGCGACATT 60.890 61.111 0.00 0.00 36.10 2.71
147 148 3.155470 GACGGGCGATGCGACATTG 62.155 63.158 0.00 0.00 36.10 2.82
148 149 4.596180 CGGGCGATGCGACATTGC 62.596 66.667 18.28 18.28 36.10 3.56
149 150 4.596180 GGGCGATGCGACATTGCG 62.596 66.667 19.21 9.81 36.10 4.85
150 151 4.596180 GGCGATGCGACATTGCGG 62.596 66.667 19.21 3.06 37.81 5.69
151 152 4.596180 GCGATGCGACATTGCGGG 62.596 66.667 13.76 0.00 37.81 6.13
152 153 2.889988 CGATGCGACATTGCGGGA 60.890 61.111 0.00 0.00 37.81 5.14
153 154 2.246739 CGATGCGACATTGCGGGAT 61.247 57.895 0.00 0.00 37.81 3.85
154 155 1.280746 GATGCGACATTGCGGGATG 59.719 57.895 0.00 0.00 37.81 3.51
155 156 2.121564 GATGCGACATTGCGGGATGG 62.122 60.000 0.00 0.00 37.81 3.51
156 157 4.256090 GCGACATTGCGGGATGGC 62.256 66.667 0.00 0.00 0.00 4.40
157 158 2.823593 CGACATTGCGGGATGGCA 60.824 61.111 0.00 0.00 42.12 4.92
158 159 2.827051 CGACATTGCGGGATGGCAG 61.827 63.158 0.00 0.00 44.94 4.85
159 160 1.451927 GACATTGCGGGATGGCAGA 60.452 57.895 0.00 0.00 44.94 4.26
160 161 1.001020 ACATTGCGGGATGGCAGAA 60.001 52.632 0.00 0.00 44.94 3.02
161 162 1.033746 ACATTGCGGGATGGCAGAAG 61.034 55.000 0.00 0.00 44.94 2.85
162 163 2.123428 ATTGCGGGATGGCAGAAGC 61.123 57.895 0.00 0.00 44.94 3.86
164 165 4.838152 GCGGGATGGCAGAAGCGA 62.838 66.667 0.00 0.00 43.41 4.93
165 166 2.587194 CGGGATGGCAGAAGCGAG 60.587 66.667 0.00 0.00 43.41 5.03
166 167 2.899339 GGGATGGCAGAAGCGAGC 60.899 66.667 0.00 0.00 43.41 5.03
167 168 2.188994 GGATGGCAGAAGCGAGCT 59.811 61.111 0.00 0.00 43.41 4.09
168 169 2.178890 GGATGGCAGAAGCGAGCTG 61.179 63.158 0.00 0.00 43.41 4.24
169 170 2.124819 ATGGCAGAAGCGAGCTGG 60.125 61.111 0.00 0.00 43.41 4.85
183 184 3.200593 CTGGCGGCAGCTAGCAAG 61.201 66.667 27.04 10.24 44.79 4.01
192 193 3.425422 GCTAGCAAGCGGAATGGG 58.575 61.111 10.63 0.00 39.39 4.00
193 194 2.838974 GCTAGCAAGCGGAATGGGC 61.839 63.158 10.63 0.00 39.39 5.36
194 195 2.513666 TAGCAAGCGGAATGGGCG 60.514 61.111 0.00 0.00 35.00 6.13
195 196 2.923426 CTAGCAAGCGGAATGGGCGA 62.923 60.000 0.00 0.00 35.00 5.54
196 197 4.179579 GCAAGCGGAATGGGCGAC 62.180 66.667 0.00 0.00 35.00 5.19
197 198 2.745884 CAAGCGGAATGGGCGACA 60.746 61.111 0.00 0.00 35.00 4.35
198 199 2.746277 AAGCGGAATGGGCGACAC 60.746 61.111 0.00 0.00 35.00 3.67
199 200 3.545124 AAGCGGAATGGGCGACACA 62.545 57.895 0.00 0.00 35.00 3.72
200 201 3.799755 GCGGAATGGGCGACACAC 61.800 66.667 0.00 0.00 0.00 3.82
201 202 3.487202 CGGAATGGGCGACACACG 61.487 66.667 0.00 0.00 45.66 4.49
202 203 2.358247 GGAATGGGCGACACACGT 60.358 61.111 0.00 0.00 44.60 4.49
203 204 2.677003 GGAATGGGCGACACACGTG 61.677 63.158 15.48 15.48 44.60 4.49
204 205 3.308878 GAATGGGCGACACACGTGC 62.309 63.158 17.22 0.00 44.60 5.34
210 211 3.698463 CGACACACGTGCGGGAAC 61.698 66.667 17.22 4.01 37.22 3.62
251 252 4.867599 GGGGTTCGACGCGGCTAG 62.868 72.222 11.76 0.00 31.02 3.42
252 253 4.125695 GGGTTCGACGCGGCTAGT 62.126 66.667 11.76 0.00 0.00 2.57
253 254 2.879462 GGTTCGACGCGGCTAGTG 60.879 66.667 11.76 0.00 0.00 2.74
254 255 2.177531 GTTCGACGCGGCTAGTGA 59.822 61.111 11.76 0.00 0.00 3.41
255 256 2.150837 GTTCGACGCGGCTAGTGAC 61.151 63.158 11.76 0.00 0.00 3.67
263 264 4.386245 GGCTAGTGACGAGCGAAG 57.614 61.111 11.45 0.00 41.06 3.79
293 294 4.814294 GGCTAGTGACGCGGGTGG 62.814 72.222 10.96 0.00 0.00 4.61
294 295 3.755628 GCTAGTGACGCGGGTGGA 61.756 66.667 10.96 0.00 0.00 4.02
295 296 2.490217 CTAGTGACGCGGGTGGAG 59.510 66.667 10.96 0.00 0.00 3.86
296 297 3.701604 CTAGTGACGCGGGTGGAGC 62.702 68.421 10.96 0.00 0.00 4.70
304 305 3.680786 CGGGTGGAGCGACACAGA 61.681 66.667 14.30 0.00 43.08 3.41
305 306 2.048127 GGGTGGAGCGACACAGAC 60.048 66.667 14.30 2.52 43.08 3.51
306 307 2.734591 GGTGGAGCGACACAGACA 59.265 61.111 14.30 0.00 43.08 3.41
307 308 1.373497 GGTGGAGCGACACAGACAG 60.373 63.158 14.30 0.00 43.08 3.51
308 309 1.373497 GTGGAGCGACACAGACAGG 60.373 63.158 8.64 0.00 40.99 4.00
309 310 2.433318 GGAGCGACACAGACAGGC 60.433 66.667 0.00 0.00 0.00 4.85
310 311 2.807045 GAGCGACACAGACAGGCG 60.807 66.667 0.00 0.00 0.00 5.52
311 312 4.363990 AGCGACACAGACAGGCGG 62.364 66.667 0.00 0.00 0.00 6.13
312 313 4.357947 GCGACACAGACAGGCGGA 62.358 66.667 0.00 0.00 0.00 5.54
313 314 2.573869 CGACACAGACAGGCGGAT 59.426 61.111 0.00 0.00 0.00 4.18
314 315 1.517257 CGACACAGACAGGCGGATC 60.517 63.158 0.00 0.00 0.00 3.36
315 316 1.517257 GACACAGACAGGCGGATCG 60.517 63.158 0.00 0.00 0.00 3.69
369 370 4.767255 GCAGACTGTGGCGGAGGG 62.767 72.222 3.99 0.00 0.00 4.30
370 371 2.997315 CAGACTGTGGCGGAGGGA 60.997 66.667 0.00 0.00 0.00 4.20
371 372 2.203788 AGACTGTGGCGGAGGGAA 60.204 61.111 0.00 0.00 0.00 3.97
372 373 2.266055 GACTGTGGCGGAGGGAAG 59.734 66.667 0.00 0.00 0.00 3.46
373 374 3.316573 GACTGTGGCGGAGGGAAGG 62.317 68.421 0.00 0.00 0.00 3.46
374 375 4.785453 CTGTGGCGGAGGGAAGGC 62.785 72.222 0.00 0.00 0.00 4.35
419 420 2.125673 GGCGGCAGCGAAAGACTA 60.126 61.111 3.07 0.00 46.35 2.59
420 421 1.521681 GGCGGCAGCGAAAGACTAT 60.522 57.895 3.07 0.00 46.35 2.12
421 422 1.638467 GCGGCAGCGAAAGACTATG 59.362 57.895 0.00 0.00 0.00 2.23
422 423 1.766143 GCGGCAGCGAAAGACTATGG 61.766 60.000 0.00 0.00 0.00 2.74
423 424 1.154205 CGGCAGCGAAAGACTATGGG 61.154 60.000 0.00 0.00 0.00 4.00
424 425 0.107654 GGCAGCGAAAGACTATGGGT 60.108 55.000 0.00 0.00 0.00 4.51
425 426 1.138266 GGCAGCGAAAGACTATGGGTA 59.862 52.381 0.00 0.00 0.00 3.69
426 427 2.419574 GGCAGCGAAAGACTATGGGTAA 60.420 50.000 0.00 0.00 0.00 2.85
427 428 3.267483 GCAGCGAAAGACTATGGGTAAA 58.733 45.455 0.00 0.00 0.00 2.01
428 429 3.687698 GCAGCGAAAGACTATGGGTAAAA 59.312 43.478 0.00 0.00 0.00 1.52
429 430 4.436986 GCAGCGAAAGACTATGGGTAAAAC 60.437 45.833 0.00 0.00 0.00 2.43
430 431 4.094442 CAGCGAAAGACTATGGGTAAAACC 59.906 45.833 0.00 0.00 37.60 3.27
431 432 4.019591 AGCGAAAGACTATGGGTAAAACCT 60.020 41.667 0.00 0.00 38.64 3.50
432 433 5.188359 AGCGAAAGACTATGGGTAAAACCTA 59.812 40.000 0.00 0.00 38.64 3.08
433 434 5.876460 GCGAAAGACTATGGGTAAAACCTAA 59.124 40.000 0.00 0.00 38.64 2.69
434 435 6.372381 GCGAAAGACTATGGGTAAAACCTAAA 59.628 38.462 0.00 0.00 38.64 1.85
435 436 7.094677 GCGAAAGACTATGGGTAAAACCTAAAA 60.095 37.037 0.00 0.00 38.64 1.52
436 437 8.785946 CGAAAGACTATGGGTAAAACCTAAAAA 58.214 33.333 0.00 0.00 38.64 1.94
437 438 9.903682 GAAAGACTATGGGTAAAACCTAAAAAC 57.096 33.333 0.00 0.00 38.64 2.43
438 439 9.650714 AAAGACTATGGGTAAAACCTAAAAACT 57.349 29.630 0.00 0.00 38.64 2.66
439 440 8.631480 AGACTATGGGTAAAACCTAAAAACTG 57.369 34.615 0.00 0.00 38.64 3.16
440 441 8.442374 AGACTATGGGTAAAACCTAAAAACTGA 58.558 33.333 0.00 0.00 38.64 3.41
441 442 9.239551 GACTATGGGTAAAACCTAAAAACTGAT 57.760 33.333 0.00 0.00 38.64 2.90
444 445 7.764141 TGGGTAAAACCTAAAAACTGATACC 57.236 36.000 0.00 0.00 38.64 2.73
445 446 7.296098 TGGGTAAAACCTAAAAACTGATACCA 58.704 34.615 0.00 0.00 38.64 3.25
446 447 7.951245 TGGGTAAAACCTAAAAACTGATACCAT 59.049 33.333 0.00 0.00 38.64 3.55
447 448 9.465199 GGGTAAAACCTAAAAACTGATACCATA 57.535 33.333 0.00 0.00 38.64 2.74
477 478 5.409643 ACACGATGTATTGCTCTTTATGC 57.590 39.130 0.00 0.00 0.00 3.14
478 479 4.875536 ACACGATGTATTGCTCTTTATGCA 59.124 37.500 0.00 0.00 38.80 3.96
479 480 5.528690 ACACGATGTATTGCTCTTTATGCAT 59.471 36.000 3.79 3.79 40.34 3.96
480 481 6.705825 ACACGATGTATTGCTCTTTATGCATA 59.294 34.615 1.16 1.16 40.34 3.14
481 482 7.095481 ACACGATGTATTGCTCTTTATGCATAG 60.095 37.037 6.50 0.00 40.34 2.23
482 483 7.116805 CACGATGTATTGCTCTTTATGCATAGA 59.883 37.037 6.50 2.68 40.34 1.98
483 484 7.116948 ACGATGTATTGCTCTTTATGCATAGAC 59.883 37.037 6.50 0.35 40.34 2.59
484 485 7.116805 CGATGTATTGCTCTTTATGCATAGACA 59.883 37.037 6.50 0.00 40.34 3.41
485 486 7.482654 TGTATTGCTCTTTATGCATAGACAC 57.517 36.000 6.50 0.00 40.34 3.67
486 487 5.663795 ATTGCTCTTTATGCATAGACACG 57.336 39.130 6.50 0.00 40.34 4.49
487 488 4.123497 TGCTCTTTATGCATAGACACGT 57.877 40.909 6.50 0.00 35.31 4.49
488 489 5.257082 TGCTCTTTATGCATAGACACGTA 57.743 39.130 6.50 0.00 35.31 3.57
489 490 5.842907 TGCTCTTTATGCATAGACACGTAT 58.157 37.500 6.50 0.00 35.31 3.06
490 491 6.977213 TGCTCTTTATGCATAGACACGTATA 58.023 36.000 6.50 0.00 35.31 1.47
491 492 7.602753 TGCTCTTTATGCATAGACACGTATAT 58.397 34.615 6.50 0.00 35.31 0.86
492 493 8.736244 TGCTCTTTATGCATAGACACGTATATA 58.264 33.333 6.50 0.00 35.31 0.86
493 494 9.737427 GCTCTTTATGCATAGACACGTATATAT 57.263 33.333 6.50 0.00 0.00 0.86
500 501 9.952188 ATGCATAGACACGTATATATGATGTAC 57.048 33.333 12.43 0.00 0.00 2.90
501 502 8.952278 TGCATAGACACGTATATATGATGTACA 58.048 33.333 12.43 0.00 0.00 2.90
502 503 9.783256 GCATAGACACGTATATATGATGTACAA 57.217 33.333 12.43 0.00 0.00 2.41
517 518 7.537596 TGATGTACAAAAATGGATCAAACCT 57.462 32.000 0.00 0.00 0.00 3.50
518 519 7.601856 TGATGTACAAAAATGGATCAAACCTC 58.398 34.615 0.00 0.00 0.00 3.85
519 520 6.968263 TGTACAAAAATGGATCAAACCTCA 57.032 33.333 0.00 0.00 0.00 3.86
520 521 6.980593 TGTACAAAAATGGATCAAACCTCAG 58.019 36.000 0.00 0.00 0.00 3.35
521 522 4.886579 ACAAAAATGGATCAAACCTCAGC 58.113 39.130 0.00 0.00 0.00 4.26
522 523 4.590222 ACAAAAATGGATCAAACCTCAGCT 59.410 37.500 0.00 0.00 0.00 4.24
523 524 5.774690 ACAAAAATGGATCAAACCTCAGCTA 59.225 36.000 0.00 0.00 0.00 3.32
524 525 6.438425 ACAAAAATGGATCAAACCTCAGCTAT 59.562 34.615 0.00 0.00 0.00 2.97
525 526 7.615365 ACAAAAATGGATCAAACCTCAGCTATA 59.385 33.333 0.00 0.00 0.00 1.31
526 527 7.573968 AAAATGGATCAAACCTCAGCTATAC 57.426 36.000 0.00 0.00 0.00 1.47
527 528 5.894298 ATGGATCAAACCTCAGCTATACA 57.106 39.130 0.00 0.00 0.00 2.29
528 529 5.692115 TGGATCAAACCTCAGCTATACAA 57.308 39.130 0.00 0.00 0.00 2.41
529 530 5.674525 TGGATCAAACCTCAGCTATACAAG 58.325 41.667 0.00 0.00 0.00 3.16
530 531 5.425217 TGGATCAAACCTCAGCTATACAAGA 59.575 40.000 0.00 0.00 0.00 3.02
531 532 6.070251 TGGATCAAACCTCAGCTATACAAGAA 60.070 38.462 0.00 0.00 0.00 2.52
532 533 6.823689 GGATCAAACCTCAGCTATACAAGAAA 59.176 38.462 0.00 0.00 0.00 2.52
533 534 7.500559 GGATCAAACCTCAGCTATACAAGAAAT 59.499 37.037 0.00 0.00 0.00 2.17
534 535 8.814038 ATCAAACCTCAGCTATACAAGAAATT 57.186 30.769 0.00 0.00 0.00 1.82
535 536 9.905713 ATCAAACCTCAGCTATACAAGAAATTA 57.094 29.630 0.00 0.00 0.00 1.40
536 537 9.733556 TCAAACCTCAGCTATACAAGAAATTAA 57.266 29.630 0.00 0.00 0.00 1.40
537 538 9.994432 CAAACCTCAGCTATACAAGAAATTAAG 57.006 33.333 0.00 0.00 0.00 1.85
538 539 9.959721 AAACCTCAGCTATACAAGAAATTAAGA 57.040 29.630 0.00 0.00 0.00 2.10
539 540 9.606631 AACCTCAGCTATACAAGAAATTAAGAG 57.393 33.333 0.00 0.00 0.00 2.85
540 541 8.982723 ACCTCAGCTATACAAGAAATTAAGAGA 58.017 33.333 0.00 0.00 0.00 3.10
541 542 9.255304 CCTCAGCTATACAAGAAATTAAGAGAC 57.745 37.037 0.00 0.00 0.00 3.36
542 543 9.809096 CTCAGCTATACAAGAAATTAAGAGACA 57.191 33.333 0.00 0.00 0.00 3.41
548 549 8.888579 ATACAAGAAATTAAGAGACATACCCG 57.111 34.615 0.00 0.00 0.00 5.28
549 550 6.942976 ACAAGAAATTAAGAGACATACCCGA 58.057 36.000 0.00 0.00 0.00 5.14
550 551 7.565680 ACAAGAAATTAAGAGACATACCCGAT 58.434 34.615 0.00 0.00 0.00 4.18
551 552 8.701895 ACAAGAAATTAAGAGACATACCCGATA 58.298 33.333 0.00 0.00 0.00 2.92
552 553 8.979574 CAAGAAATTAAGAGACATACCCGATAC 58.020 37.037 0.00 0.00 0.00 2.24
553 554 8.246430 AGAAATTAAGAGACATACCCGATACA 57.754 34.615 0.00 0.00 0.00 2.29
554 555 8.701895 AGAAATTAAGAGACATACCCGATACAA 58.298 33.333 0.00 0.00 0.00 2.41
555 556 9.321562 GAAATTAAGAGACATACCCGATACAAA 57.678 33.333 0.00 0.00 0.00 2.83
556 557 9.675464 AAATTAAGAGACATACCCGATACAAAA 57.325 29.630 0.00 0.00 0.00 2.44
557 558 9.847224 AATTAAGAGACATACCCGATACAAAAT 57.153 29.630 0.00 0.00 0.00 1.82
560 561 8.833231 AAGAGACATACCCGATACAAAATATG 57.167 34.615 0.00 0.00 0.00 1.78
561 562 7.386851 AGAGACATACCCGATACAAAATATGG 58.613 38.462 0.00 0.00 0.00 2.74
562 563 7.234782 AGAGACATACCCGATACAAAATATGGA 59.765 37.037 0.00 0.00 0.00 3.41
563 564 7.159372 AGACATACCCGATACAAAATATGGAC 58.841 38.462 0.00 0.00 0.00 4.02
564 565 6.833041 ACATACCCGATACAAAATATGGACA 58.167 36.000 0.00 0.00 0.00 4.02
565 566 6.708949 ACATACCCGATACAAAATATGGACAC 59.291 38.462 0.00 0.00 0.00 3.67
566 567 5.105567 ACCCGATACAAAATATGGACACA 57.894 39.130 0.00 0.00 0.00 3.72
567 568 5.502079 ACCCGATACAAAATATGGACACAA 58.498 37.500 0.00 0.00 0.00 3.33
568 569 6.126409 ACCCGATACAAAATATGGACACAAT 58.874 36.000 0.00 0.00 0.00 2.71
569 570 7.284074 ACCCGATACAAAATATGGACACAATA 58.716 34.615 0.00 0.00 0.00 1.90
570 571 7.227910 ACCCGATACAAAATATGGACACAATAC 59.772 37.037 0.00 0.00 0.00 1.89
571 572 7.227711 CCCGATACAAAATATGGACACAATACA 59.772 37.037 0.00 0.00 0.00 2.29
572 573 8.783093 CCGATACAAAATATGGACACAATACAT 58.217 33.333 0.00 0.00 0.00 2.29
584 585 9.851686 ATGGACACAATACATATACTCAACAAT 57.148 29.630 0.00 0.00 0.00 2.71
673 679 2.418197 GCTATAAACTGCCTGTCCGACA 60.418 50.000 0.29 0.29 0.00 4.35
680 686 1.212751 GCCTGTCCGACAAATTGCC 59.787 57.895 2.19 0.00 0.00 4.52
692 698 4.484236 GACAAATTGCCACGATCAAATGA 58.516 39.130 0.00 0.00 0.00 2.57
693 699 5.075858 ACAAATTGCCACGATCAAATGAT 57.924 34.783 0.00 0.00 37.51 2.45
721 732 1.570347 TTTCCCAATGTTCGTCGCCG 61.570 55.000 0.00 0.00 0.00 6.46
724 735 4.160635 CAATGTTCGTCGCCGCCC 62.161 66.667 0.00 0.00 0.00 6.13
725 736 4.690719 AATGTTCGTCGCCGCCCA 62.691 61.111 0.00 0.00 0.00 5.36
726 737 4.690719 ATGTTCGTCGCCGCCCAA 62.691 61.111 0.00 0.00 0.00 4.12
733 785 4.858680 TCGCCGCCCAACACACAA 62.859 61.111 0.00 0.00 0.00 3.33
734 786 4.326766 CGCCGCCCAACACACAAG 62.327 66.667 0.00 0.00 0.00 3.16
740 792 1.757423 GCCCAACACACAAGCCCAAT 61.757 55.000 0.00 0.00 0.00 3.16
744 796 0.831711 AACACACAAGCCCAATCCCC 60.832 55.000 0.00 0.00 0.00 4.81
821 893 1.353022 AGAGAGAAGACACGAGGGAGT 59.647 52.381 0.00 0.00 0.00 3.85
843 915 0.391793 GCCCGATAGATAGGCAAGGC 60.392 60.000 0.00 0.00 46.34 4.35
871 946 2.077687 CAAGATTGGGATTGGAGGGG 57.922 55.000 0.00 0.00 0.00 4.79
943 1018 2.432444 CCCTTCCGTTGCACTCAATTA 58.568 47.619 0.00 0.00 34.29 1.40
1194 1269 2.835431 CTCCATCGCCGAGGAGGT 60.835 66.667 18.89 0.00 46.11 3.85
2020 2095 5.434408 TCAGCTTGCAATGAGAATGATACT 58.566 37.500 0.00 0.00 0.00 2.12
2655 2730 0.550914 ACCACAAAACTGCCTCCAGA 59.449 50.000 0.00 0.00 41.77 3.86
2791 2866 3.694566 AGTGGGTTGTTTGAGAGTTTGAC 59.305 43.478 0.00 0.00 0.00 3.18
2981 4992 2.665649 TAGGCATACACAAGACACCG 57.334 50.000 0.00 0.00 0.00 4.94
3000 5011 2.101415 CCGCTCTGTAGATTCATGTGGA 59.899 50.000 0.00 0.00 0.00 4.02
3236 5291 7.064966 GGCCCTTTTTGAACTATGATTTGAATG 59.935 37.037 0.00 0.00 0.00 2.67
3358 5415 2.237143 CCTCTTCTGGCCTGTATTGTGA 59.763 50.000 3.32 0.00 0.00 3.58
3398 5455 3.766545 TGAGGCATAACTTTTTCTGGCT 58.233 40.909 0.00 0.00 44.47 4.75
3489 5547 3.699779 TGCTAGTAGCTCGTGATTCTG 57.300 47.619 22.34 0.00 42.97 3.02
3584 5642 1.613437 ACAACCTGTAGTTTGCCATGC 59.387 47.619 0.00 0.00 36.18 4.06
3593 5651 0.896923 GTTTGCCATGCATTCCCTCA 59.103 50.000 0.00 0.00 38.76 3.86
3714 5772 1.715585 CGGTCTGCAATAACCTGCG 59.284 57.895 10.02 0.00 45.74 5.18
3908 5966 9.241317 GAACTTTATGCTTTGATGTTATCCATG 57.759 33.333 0.00 0.00 32.56 3.66
4282 6340 2.173569 GGACTTTCTGGGCCATCATAGT 59.826 50.000 6.72 8.59 0.00 2.12
4764 6822 6.766467 GTCTTAGGTTATATTTGGTGGTCTGG 59.234 42.308 0.00 0.00 0.00 3.86
5143 7205 4.543689 AGGGTAATGGTATCTCGAGTTCA 58.456 43.478 13.13 7.21 0.00 3.18
5144 7206 5.148502 AGGGTAATGGTATCTCGAGTTCAT 58.851 41.667 13.13 9.12 0.00 2.57
5227 7488 2.825861 TAAGTGGGAGGTGACGTTTC 57.174 50.000 0.00 0.00 0.00 2.78
5266 7556 7.280876 GGTGTGCTCATAGAAGTATTTGATTCA 59.719 37.037 0.00 0.00 0.00 2.57
5348 7639 4.585955 TTGAGAGTGTCTGTTCTGTACC 57.414 45.455 0.00 0.00 0.00 3.34
5451 10255 9.613428 CCACATTATTATAGAAAACTCTGTCCA 57.387 33.333 0.00 0.00 0.00 4.02
5482 10286 6.514705 GCGTCTAACCTCTTAACTTATCGGAT 60.515 42.308 0.00 0.00 0.00 4.18
5486 10290 5.184340 ACCTCTTAACTTATCGGATCACG 57.816 43.478 0.00 0.00 46.11 4.35
5614 11658 5.642063 TCGATGAGTTTAAATTGGGTGACTC 59.358 40.000 0.00 0.00 35.33 3.36
5635 11679 3.146847 CAGGGCGACTAACCTTTTTCTT 58.853 45.455 0.00 0.00 34.05 2.52
5641 11685 6.037726 GGCGACTAACCTTTTTCTTGAAAAA 58.962 36.000 17.01 17.01 36.82 1.94
5710 11754 6.578944 TCTGTATAAATAAGATGCACACGGT 58.421 36.000 0.00 0.00 0.00 4.83
5742 11787 1.349026 CTCTCACACAACCAGGGTCAT 59.651 52.381 0.00 0.00 0.00 3.06
5747 11792 0.874390 CACAACCAGGGTCATTGACG 59.126 55.000 10.56 0.00 32.65 4.35
5754 11799 0.320771 AGGGTCATTGACGTGTGAGC 60.321 55.000 10.56 13.12 40.97 4.26
5850 11895 7.013846 CACCTTAAAATCAGTGTTTGTCCCTAA 59.986 37.037 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.759828 CAACCCGTTCGACGACGC 61.760 66.667 1.48 0.00 46.05 5.19
3 4 3.101428 CCAACCCGTTCGACGACG 61.101 66.667 0.00 0.00 46.05 5.12
4 5 1.731969 CTCCAACCCGTTCGACGAC 60.732 63.158 0.00 0.00 46.05 4.34
5 6 1.737355 AACTCCAACCCGTTCGACGA 61.737 55.000 8.63 0.00 46.05 4.20
6 7 1.300388 AACTCCAACCCGTTCGACG 60.300 57.895 0.00 0.00 42.11 5.12
7 8 1.226030 CCAACTCCAACCCGTTCGAC 61.226 60.000 0.00 0.00 0.00 4.20
8 9 1.070105 CCAACTCCAACCCGTTCGA 59.930 57.895 0.00 0.00 0.00 3.71
9 10 0.816421 AACCAACTCCAACCCGTTCG 60.816 55.000 0.00 0.00 0.00 3.95
10 11 0.666374 CAACCAACTCCAACCCGTTC 59.334 55.000 0.00 0.00 0.00 3.95
11 12 0.256464 TCAACCAACTCCAACCCGTT 59.744 50.000 0.00 0.00 0.00 4.44
12 13 0.476771 ATCAACCAACTCCAACCCGT 59.523 50.000 0.00 0.00 0.00 5.28
13 14 0.881118 CATCAACCAACTCCAACCCG 59.119 55.000 0.00 0.00 0.00 5.28
14 15 0.603065 GCATCAACCAACTCCAACCC 59.397 55.000 0.00 0.00 0.00 4.11
15 16 0.240945 CGCATCAACCAACTCCAACC 59.759 55.000 0.00 0.00 0.00 3.77
16 17 0.240945 CCGCATCAACCAACTCCAAC 59.759 55.000 0.00 0.00 0.00 3.77
17 18 0.109532 TCCGCATCAACCAACTCCAA 59.890 50.000 0.00 0.00 0.00 3.53
18 19 0.321564 CTCCGCATCAACCAACTCCA 60.322 55.000 0.00 0.00 0.00 3.86
19 20 1.026718 CCTCCGCATCAACCAACTCC 61.027 60.000 0.00 0.00 0.00 3.85
20 21 0.036388 TCCTCCGCATCAACCAACTC 60.036 55.000 0.00 0.00 0.00 3.01
21 22 0.036010 CTCCTCCGCATCAACCAACT 60.036 55.000 0.00 0.00 0.00 3.16
22 23 1.026718 CCTCCTCCGCATCAACCAAC 61.027 60.000 0.00 0.00 0.00 3.77
23 24 1.299648 CCTCCTCCGCATCAACCAA 59.700 57.895 0.00 0.00 0.00 3.67
24 25 1.918293 ACCTCCTCCGCATCAACCA 60.918 57.895 0.00 0.00 0.00 3.67
25 26 1.450312 CACCTCCTCCGCATCAACC 60.450 63.158 0.00 0.00 0.00 3.77
26 27 0.741221 GTCACCTCCTCCGCATCAAC 60.741 60.000 0.00 0.00 0.00 3.18
27 28 1.596934 GTCACCTCCTCCGCATCAA 59.403 57.895 0.00 0.00 0.00 2.57
28 29 2.710902 CGTCACCTCCTCCGCATCA 61.711 63.158 0.00 0.00 0.00 3.07
29 30 2.105128 CGTCACCTCCTCCGCATC 59.895 66.667 0.00 0.00 0.00 3.91
30 31 3.461773 CCGTCACCTCCTCCGCAT 61.462 66.667 0.00 0.00 0.00 4.73
31 32 3.957435 ATCCGTCACCTCCTCCGCA 62.957 63.158 0.00 0.00 0.00 5.69
32 33 3.148279 ATCCGTCACCTCCTCCGC 61.148 66.667 0.00 0.00 0.00 5.54
33 34 1.753078 TCATCCGTCACCTCCTCCG 60.753 63.158 0.00 0.00 0.00 4.63
34 35 0.970937 TGTCATCCGTCACCTCCTCC 60.971 60.000 0.00 0.00 0.00 4.30
35 36 1.115467 ATGTCATCCGTCACCTCCTC 58.885 55.000 0.00 0.00 0.00 3.71
36 37 0.826715 CATGTCATCCGTCACCTCCT 59.173 55.000 0.00 0.00 0.00 3.69
37 38 0.179073 CCATGTCATCCGTCACCTCC 60.179 60.000 0.00 0.00 0.00 4.30
38 39 0.811616 GCCATGTCATCCGTCACCTC 60.812 60.000 0.00 0.00 0.00 3.85
39 40 1.221840 GCCATGTCATCCGTCACCT 59.778 57.895 0.00 0.00 0.00 4.00
40 41 2.173669 CGCCATGTCATCCGTCACC 61.174 63.158 0.00 0.00 0.00 4.02
41 42 1.148157 CTCGCCATGTCATCCGTCAC 61.148 60.000 0.00 0.00 0.00 3.67
42 43 1.141665 CTCGCCATGTCATCCGTCA 59.858 57.895 0.00 0.00 0.00 4.35
43 44 0.596083 CTCTCGCCATGTCATCCGTC 60.596 60.000 0.00 0.00 0.00 4.79
44 45 1.323271 ACTCTCGCCATGTCATCCGT 61.323 55.000 0.00 0.00 0.00 4.69
45 46 0.873312 CACTCTCGCCATGTCATCCG 60.873 60.000 0.00 0.00 0.00 4.18
46 47 0.531532 CCACTCTCGCCATGTCATCC 60.532 60.000 0.00 0.00 0.00 3.51
47 48 0.531532 CCCACTCTCGCCATGTCATC 60.532 60.000 0.00 0.00 0.00 2.92
48 49 0.977627 TCCCACTCTCGCCATGTCAT 60.978 55.000 0.00 0.00 0.00 3.06
49 50 1.609210 TCCCACTCTCGCCATGTCA 60.609 57.895 0.00 0.00 0.00 3.58
50 51 1.153549 GTCCCACTCTCGCCATGTC 60.154 63.158 0.00 0.00 0.00 3.06
51 52 2.982130 GTCCCACTCTCGCCATGT 59.018 61.111 0.00 0.00 0.00 3.21
52 53 2.202797 CGTCCCACTCTCGCCATG 60.203 66.667 0.00 0.00 0.00 3.66
53 54 3.461773 CCGTCCCACTCTCGCCAT 61.462 66.667 0.00 0.00 0.00 4.40
56 57 4.500116 GAGCCGTCCCACTCTCGC 62.500 72.222 0.00 0.00 0.00 5.03
57 58 4.180946 CGAGCCGTCCCACTCTCG 62.181 72.222 0.00 0.00 41.66 4.04
58 59 3.827898 CCGAGCCGTCCCACTCTC 61.828 72.222 0.00 0.00 0.00 3.20
78 79 4.681978 AAGCCGTCACACCCGAGC 62.682 66.667 0.00 0.00 0.00 5.03
79 80 2.030562 AAAGCCGTCACACCCGAG 59.969 61.111 0.00 0.00 0.00 4.63
80 81 2.280524 CAAAGCCGTCACACCCGA 60.281 61.111 0.00 0.00 0.00 5.14
81 82 3.353836 CCAAAGCCGTCACACCCG 61.354 66.667 0.00 0.00 0.00 5.28
82 83 2.983592 CCCAAAGCCGTCACACCC 60.984 66.667 0.00 0.00 0.00 4.61
83 84 3.670377 GCCCAAAGCCGTCACACC 61.670 66.667 0.00 0.00 34.35 4.16
84 85 4.025401 CGCCCAAAGCCGTCACAC 62.025 66.667 0.00 0.00 38.78 3.82
85 86 4.243008 TCGCCCAAAGCCGTCACA 62.243 61.111 0.00 0.00 38.78 3.58
86 87 3.423154 CTCGCCCAAAGCCGTCAC 61.423 66.667 0.00 0.00 38.78 3.67
87 88 4.697756 CCTCGCCCAAAGCCGTCA 62.698 66.667 0.00 0.00 38.78 4.35
92 93 3.622060 TACCTGCCTCGCCCAAAGC 62.622 63.158 0.00 0.00 38.52 3.51
93 94 1.450312 CTACCTGCCTCGCCCAAAG 60.450 63.158 0.00 0.00 0.00 2.77
94 95 0.905809 TACTACCTGCCTCGCCCAAA 60.906 55.000 0.00 0.00 0.00 3.28
95 96 1.305465 TACTACCTGCCTCGCCCAA 60.305 57.895 0.00 0.00 0.00 4.12
96 97 1.756950 CTACTACCTGCCTCGCCCA 60.757 63.158 0.00 0.00 0.00 5.36
97 98 3.130227 CTACTACCTGCCTCGCCC 58.870 66.667 0.00 0.00 0.00 6.13
98 99 1.956629 TTGCTACTACCTGCCTCGCC 61.957 60.000 0.00 0.00 0.00 5.54
99 100 0.528684 CTTGCTACTACCTGCCTCGC 60.529 60.000 0.00 0.00 0.00 5.03
100 101 0.103208 CCTTGCTACTACCTGCCTCG 59.897 60.000 0.00 0.00 0.00 4.63
101 102 0.179070 GCCTTGCTACTACCTGCCTC 60.179 60.000 0.00 0.00 0.00 4.70
102 103 1.908483 GCCTTGCTACTACCTGCCT 59.092 57.895 0.00 0.00 0.00 4.75
103 104 1.521681 CGCCTTGCTACTACCTGCC 60.522 63.158 0.00 0.00 0.00 4.85
104 105 1.084370 CACGCCTTGCTACTACCTGC 61.084 60.000 0.00 0.00 0.00 4.85
105 106 0.460284 CCACGCCTTGCTACTACCTG 60.460 60.000 0.00 0.00 0.00 4.00
106 107 1.898154 CCACGCCTTGCTACTACCT 59.102 57.895 0.00 0.00 0.00 3.08
107 108 1.814169 GCCACGCCTTGCTACTACC 60.814 63.158 0.00 0.00 0.00 3.18
108 109 1.079405 TGCCACGCCTTGCTACTAC 60.079 57.895 0.00 0.00 0.00 2.73
109 110 1.218047 CTGCCACGCCTTGCTACTA 59.782 57.895 0.00 0.00 0.00 1.82
110 111 2.046892 CTGCCACGCCTTGCTACT 60.047 61.111 0.00 0.00 0.00 2.57
111 112 3.804193 GCTGCCACGCCTTGCTAC 61.804 66.667 0.00 0.00 0.00 3.58
129 130 2.890474 AATGTCGCATCGCCCGTC 60.890 61.111 0.00 0.00 0.00 4.79
130 131 3.195002 CAATGTCGCATCGCCCGT 61.195 61.111 0.00 0.00 0.00 5.28
131 132 4.596180 GCAATGTCGCATCGCCCG 62.596 66.667 0.00 0.00 0.00 6.13
132 133 4.596180 CGCAATGTCGCATCGCCC 62.596 66.667 0.00 0.00 0.00 6.13
133 134 4.596180 CCGCAATGTCGCATCGCC 62.596 66.667 0.00 0.00 0.00 5.54
134 135 4.596180 CCCGCAATGTCGCATCGC 62.596 66.667 0.00 0.00 0.00 4.58
135 136 2.246739 ATCCCGCAATGTCGCATCG 61.247 57.895 0.00 0.00 0.00 3.84
136 137 1.280746 CATCCCGCAATGTCGCATC 59.719 57.895 0.00 0.00 0.00 3.91
137 138 2.188829 CCATCCCGCAATGTCGCAT 61.189 57.895 0.00 0.00 0.00 4.73
138 139 2.823593 CCATCCCGCAATGTCGCA 60.824 61.111 0.00 0.00 0.00 5.10
139 140 4.256090 GCCATCCCGCAATGTCGC 62.256 66.667 0.00 0.00 0.00 5.19
140 141 2.823593 TGCCATCCCGCAATGTCG 60.824 61.111 0.00 0.00 35.32 4.35
141 142 1.031571 TTCTGCCATCCCGCAATGTC 61.032 55.000 0.00 0.00 38.56 3.06
142 143 1.001020 TTCTGCCATCCCGCAATGT 60.001 52.632 0.00 0.00 38.56 2.71
143 144 1.731700 CTTCTGCCATCCCGCAATG 59.268 57.895 0.00 0.00 38.56 2.82
144 145 2.123428 GCTTCTGCCATCCCGCAAT 61.123 57.895 0.00 0.00 38.56 3.56
145 146 2.751436 GCTTCTGCCATCCCGCAA 60.751 61.111 0.00 0.00 38.56 4.85
147 148 4.838152 TCGCTTCTGCCATCCCGC 62.838 66.667 0.00 0.00 35.36 6.13
148 149 2.587194 CTCGCTTCTGCCATCCCG 60.587 66.667 0.00 0.00 35.36 5.14
149 150 2.899339 GCTCGCTTCTGCCATCCC 60.899 66.667 0.00 0.00 35.36 3.85
150 151 2.178890 CAGCTCGCTTCTGCCATCC 61.179 63.158 0.00 0.00 35.36 3.51
151 152 2.178890 CCAGCTCGCTTCTGCCATC 61.179 63.158 0.00 0.00 35.36 3.51
152 153 2.124819 CCAGCTCGCTTCTGCCAT 60.125 61.111 0.00 0.00 35.36 4.40
166 167 3.200593 CTTGCTAGCTGCCGCCAG 61.201 66.667 17.23 0.00 42.00 4.85
170 171 4.819761 TCCGCTTGCTAGCTGCCG 62.820 66.667 17.23 14.32 45.51 5.69
171 172 1.821332 ATTCCGCTTGCTAGCTGCC 60.821 57.895 17.23 2.71 45.51 4.85
172 173 1.354506 CATTCCGCTTGCTAGCTGC 59.645 57.895 17.23 18.15 45.51 5.25
173 174 1.442526 CCCATTCCGCTTGCTAGCTG 61.443 60.000 17.23 11.71 45.51 4.24
174 175 1.153086 CCCATTCCGCTTGCTAGCT 60.153 57.895 17.23 0.00 45.51 3.32
175 176 2.838974 GCCCATTCCGCTTGCTAGC 61.839 63.158 8.10 8.10 44.21 3.42
176 177 2.537560 CGCCCATTCCGCTTGCTAG 61.538 63.158 0.00 0.00 0.00 3.42
177 178 2.513666 CGCCCATTCCGCTTGCTA 60.514 61.111 0.00 0.00 0.00 3.49
178 179 4.408821 TCGCCCATTCCGCTTGCT 62.409 61.111 0.00 0.00 0.00 3.91
179 180 4.179579 GTCGCCCATTCCGCTTGC 62.180 66.667 0.00 0.00 0.00 4.01
180 181 2.745884 TGTCGCCCATTCCGCTTG 60.746 61.111 0.00 0.00 0.00 4.01
181 182 2.746277 GTGTCGCCCATTCCGCTT 60.746 61.111 0.00 0.00 0.00 4.68
182 183 4.015406 TGTGTCGCCCATTCCGCT 62.015 61.111 0.00 0.00 0.00 5.52
183 184 3.799755 GTGTGTCGCCCATTCCGC 61.800 66.667 0.00 0.00 0.00 5.54
184 185 3.487202 CGTGTGTCGCCCATTCCG 61.487 66.667 0.00 0.00 0.00 4.30
185 186 2.358247 ACGTGTGTCGCCCATTCC 60.358 61.111 0.00 0.00 44.19 3.01
186 187 2.860293 CACGTGTGTCGCCCATTC 59.140 61.111 7.58 0.00 44.19 2.67
187 188 3.353836 GCACGTGTGTCGCCCATT 61.354 61.111 18.38 0.00 44.19 3.16
193 194 3.698463 GTTCCCGCACGTGTGTCG 61.698 66.667 26.10 16.54 46.00 4.35
194 195 3.698463 CGTTCCCGCACGTGTGTC 61.698 66.667 26.10 12.97 35.34 3.67
234 235 4.867599 CTAGCCGCGTCGAACCCC 62.868 72.222 4.92 0.00 0.00 4.95
235 236 4.125695 ACTAGCCGCGTCGAACCC 62.126 66.667 4.92 0.00 0.00 4.11
236 237 2.879462 CACTAGCCGCGTCGAACC 60.879 66.667 4.92 0.00 0.00 3.62
237 238 2.150837 GTCACTAGCCGCGTCGAAC 61.151 63.158 4.92 0.00 0.00 3.95
238 239 2.177531 GTCACTAGCCGCGTCGAA 59.822 61.111 4.92 0.00 0.00 3.71
239 240 4.156622 CGTCACTAGCCGCGTCGA 62.157 66.667 4.92 0.00 0.00 4.20
240 241 4.156622 TCGTCACTAGCCGCGTCG 62.157 66.667 4.92 0.00 0.00 5.12
241 242 2.277373 CTCGTCACTAGCCGCGTC 60.277 66.667 4.92 0.00 0.00 5.19
242 243 4.477975 GCTCGTCACTAGCCGCGT 62.478 66.667 4.92 0.00 33.73 6.01
244 245 3.678717 TTCGCTCGTCACTAGCCGC 62.679 63.158 0.00 0.00 36.60 6.53
245 246 1.583967 CTTCGCTCGTCACTAGCCG 60.584 63.158 0.00 0.00 36.60 5.52
246 247 1.874466 GCTTCGCTCGTCACTAGCC 60.874 63.158 0.00 0.00 36.60 3.93
247 248 2.218239 CGCTTCGCTCGTCACTAGC 61.218 63.158 0.00 0.00 36.60 3.42
248 249 1.583967 CCGCTTCGCTCGTCACTAG 60.584 63.158 0.00 0.00 0.00 2.57
249 250 2.483745 CCGCTTCGCTCGTCACTA 59.516 61.111 0.00 0.00 0.00 2.74
250 251 4.421479 CCCGCTTCGCTCGTCACT 62.421 66.667 0.00 0.00 0.00 3.41
276 277 4.814294 CCACCCGCGTCACTAGCC 62.814 72.222 4.92 0.00 0.00 3.93
277 278 3.701604 CTCCACCCGCGTCACTAGC 62.702 68.421 4.92 0.00 0.00 3.42
278 279 2.490217 CTCCACCCGCGTCACTAG 59.510 66.667 4.92 0.00 0.00 2.57
279 280 3.755628 GCTCCACCCGCGTCACTA 61.756 66.667 4.92 0.00 0.00 2.74
287 288 3.680786 TCTGTGTCGCTCCACCCG 61.681 66.667 0.83 0.00 34.35 5.28
288 289 2.048127 GTCTGTGTCGCTCCACCC 60.048 66.667 0.83 0.00 34.35 4.61
289 290 1.373497 CTGTCTGTGTCGCTCCACC 60.373 63.158 0.83 0.00 34.35 4.61
290 291 1.373497 CCTGTCTGTGTCGCTCCAC 60.373 63.158 0.00 0.00 35.86 4.02
291 292 3.051210 CCTGTCTGTGTCGCTCCA 58.949 61.111 0.00 0.00 0.00 3.86
292 293 2.433318 GCCTGTCTGTGTCGCTCC 60.433 66.667 0.00 0.00 0.00 4.70
293 294 2.807045 CGCCTGTCTGTGTCGCTC 60.807 66.667 0.00 0.00 0.00 5.03
294 295 4.363990 CCGCCTGTCTGTGTCGCT 62.364 66.667 0.00 0.00 0.00 4.93
295 296 3.649277 ATCCGCCTGTCTGTGTCGC 62.649 63.158 0.00 0.00 0.00 5.19
296 297 1.517257 GATCCGCCTGTCTGTGTCG 60.517 63.158 0.00 0.00 0.00 4.35
297 298 1.517257 CGATCCGCCTGTCTGTGTC 60.517 63.158 0.00 0.00 0.00 3.67
298 299 2.573869 CGATCCGCCTGTCTGTGT 59.426 61.111 0.00 0.00 0.00 3.72
352 353 4.767255 CCCTCCGCCACAGTCTGC 62.767 72.222 0.00 0.00 0.00 4.26
353 354 2.513026 CTTCCCTCCGCCACAGTCTG 62.513 65.000 0.00 0.00 0.00 3.51
354 355 2.203788 TTCCCTCCGCCACAGTCT 60.204 61.111 0.00 0.00 0.00 3.24
355 356 2.266055 CTTCCCTCCGCCACAGTC 59.734 66.667 0.00 0.00 0.00 3.51
356 357 3.322466 CCTTCCCTCCGCCACAGT 61.322 66.667 0.00 0.00 0.00 3.55
357 358 4.785453 GCCTTCCCTCCGCCACAG 62.785 72.222 0.00 0.00 0.00 3.66
401 402 3.982372 TAGTCTTTCGCTGCCGCCG 62.982 63.158 0.00 0.00 0.00 6.46
402 403 1.521681 ATAGTCTTTCGCTGCCGCC 60.522 57.895 0.00 0.00 0.00 6.13
403 404 1.638467 CATAGTCTTTCGCTGCCGC 59.362 57.895 0.00 0.00 0.00 6.53
404 405 1.154205 CCCATAGTCTTTCGCTGCCG 61.154 60.000 0.00 0.00 0.00 5.69
405 406 0.107654 ACCCATAGTCTTTCGCTGCC 60.108 55.000 0.00 0.00 0.00 4.85
406 407 2.596904 TACCCATAGTCTTTCGCTGC 57.403 50.000 0.00 0.00 0.00 5.25
407 408 4.094442 GGTTTTACCCATAGTCTTTCGCTG 59.906 45.833 0.00 0.00 30.04 5.18
408 409 4.019591 AGGTTTTACCCATAGTCTTTCGCT 60.020 41.667 0.00 0.00 39.75 4.93
409 410 4.259356 AGGTTTTACCCATAGTCTTTCGC 58.741 43.478 0.00 0.00 39.75 4.70
410 411 7.910441 TTTAGGTTTTACCCATAGTCTTTCG 57.090 36.000 0.00 0.00 39.75 3.46
411 412 9.903682 GTTTTTAGGTTTTACCCATAGTCTTTC 57.096 33.333 0.00 0.00 39.75 2.62
412 413 9.650714 AGTTTTTAGGTTTTACCCATAGTCTTT 57.349 29.630 0.00 0.00 39.75 2.52
413 414 9.074576 CAGTTTTTAGGTTTTACCCATAGTCTT 57.925 33.333 0.00 0.00 39.75 3.01
414 415 8.442374 TCAGTTTTTAGGTTTTACCCATAGTCT 58.558 33.333 0.00 0.00 39.75 3.24
415 416 8.625786 TCAGTTTTTAGGTTTTACCCATAGTC 57.374 34.615 0.00 0.00 39.75 2.59
418 419 9.465199 GGTATCAGTTTTTAGGTTTTACCCATA 57.535 33.333 0.00 0.00 39.75 2.74
419 420 7.951245 TGGTATCAGTTTTTAGGTTTTACCCAT 59.049 33.333 0.00 0.00 39.75 4.00
420 421 7.296098 TGGTATCAGTTTTTAGGTTTTACCCA 58.704 34.615 0.00 0.00 39.75 4.51
421 422 7.764141 TGGTATCAGTTTTTAGGTTTTACCC 57.236 36.000 0.00 0.00 39.75 3.69
451 452 8.070171 GCATAAAGAGCAATACATCGTGTAATT 58.930 33.333 2.70 0.00 36.31 1.40
452 453 7.226523 TGCATAAAGAGCAATACATCGTGTAAT 59.773 33.333 2.70 0.00 39.39 1.89
453 454 6.536941 TGCATAAAGAGCAATACATCGTGTAA 59.463 34.615 2.70 0.00 39.39 2.41
454 455 6.045955 TGCATAAAGAGCAATACATCGTGTA 58.954 36.000 0.00 1.30 39.39 2.90
455 456 4.875536 TGCATAAAGAGCAATACATCGTGT 59.124 37.500 0.00 0.00 39.39 4.49
456 457 5.408204 TGCATAAAGAGCAATACATCGTG 57.592 39.130 0.00 0.00 39.39 4.35
457 458 7.116948 GTCTATGCATAAAGAGCAATACATCGT 59.883 37.037 8.00 0.00 46.27 3.73
458 459 7.116805 TGTCTATGCATAAAGAGCAATACATCG 59.883 37.037 8.00 0.00 46.27 3.84
459 460 8.226448 GTGTCTATGCATAAAGAGCAATACATC 58.774 37.037 8.00 0.00 46.27 3.06
460 461 7.095481 CGTGTCTATGCATAAAGAGCAATACAT 60.095 37.037 8.00 0.00 46.27 2.29
461 462 6.200854 CGTGTCTATGCATAAAGAGCAATACA 59.799 38.462 8.00 0.00 46.27 2.29
462 463 6.201044 ACGTGTCTATGCATAAAGAGCAATAC 59.799 38.462 8.00 0.00 46.27 1.89
463 464 6.280643 ACGTGTCTATGCATAAAGAGCAATA 58.719 36.000 8.00 0.00 46.27 1.90
464 465 5.118990 ACGTGTCTATGCATAAAGAGCAAT 58.881 37.500 8.00 0.00 46.27 3.56
465 466 4.503910 ACGTGTCTATGCATAAAGAGCAA 58.496 39.130 8.00 0.00 46.27 3.91
467 468 9.737427 ATATATACGTGTCTATGCATAAAGAGC 57.263 33.333 8.00 0.24 0.00 4.09
474 475 9.952188 GTACATCATATATACGTGTCTATGCAT 57.048 33.333 3.79 3.79 0.00 3.96
475 476 8.952278 TGTACATCATATATACGTGTCTATGCA 58.048 33.333 11.35 0.00 0.00 3.96
476 477 9.783256 TTGTACATCATATATACGTGTCTATGC 57.217 33.333 11.35 1.06 0.00 3.14
491 492 9.253832 AGGTTTGATCCATTTTTGTACATCATA 57.746 29.630 0.00 0.00 0.00 2.15
492 493 8.137745 AGGTTTGATCCATTTTTGTACATCAT 57.862 30.769 0.00 0.00 0.00 2.45
493 494 7.232330 TGAGGTTTGATCCATTTTTGTACATCA 59.768 33.333 0.00 0.00 0.00 3.07
494 495 7.601856 TGAGGTTTGATCCATTTTTGTACATC 58.398 34.615 0.00 0.00 0.00 3.06
495 496 7.537596 TGAGGTTTGATCCATTTTTGTACAT 57.462 32.000 0.00 0.00 0.00 2.29
496 497 6.516527 GCTGAGGTTTGATCCATTTTTGTACA 60.517 38.462 0.00 0.00 0.00 2.90
497 498 5.863935 GCTGAGGTTTGATCCATTTTTGTAC 59.136 40.000 0.00 0.00 0.00 2.90
498 499 5.774690 AGCTGAGGTTTGATCCATTTTTGTA 59.225 36.000 0.00 0.00 0.00 2.41
499 500 4.590222 AGCTGAGGTTTGATCCATTTTTGT 59.410 37.500 0.00 0.00 0.00 2.83
500 501 5.143376 AGCTGAGGTTTGATCCATTTTTG 57.857 39.130 0.00 0.00 0.00 2.44
501 502 7.615365 TGTATAGCTGAGGTTTGATCCATTTTT 59.385 33.333 0.00 0.00 0.00 1.94
502 503 7.118723 TGTATAGCTGAGGTTTGATCCATTTT 58.881 34.615 0.00 0.00 0.00 1.82
503 504 6.662755 TGTATAGCTGAGGTTTGATCCATTT 58.337 36.000 0.00 0.00 0.00 2.32
504 505 6.252599 TGTATAGCTGAGGTTTGATCCATT 57.747 37.500 0.00 0.00 0.00 3.16
505 506 5.894298 TGTATAGCTGAGGTTTGATCCAT 57.106 39.130 0.00 0.00 0.00 3.41
506 507 5.425217 TCTTGTATAGCTGAGGTTTGATCCA 59.575 40.000 0.00 0.00 0.00 3.41
507 508 5.918608 TCTTGTATAGCTGAGGTTTGATCC 58.081 41.667 0.00 0.00 0.00 3.36
508 509 7.849804 TTTCTTGTATAGCTGAGGTTTGATC 57.150 36.000 0.00 0.00 0.00 2.92
509 510 8.814038 AATTTCTTGTATAGCTGAGGTTTGAT 57.186 30.769 0.00 0.00 0.00 2.57
510 511 9.733556 TTAATTTCTTGTATAGCTGAGGTTTGA 57.266 29.630 0.00 0.00 0.00 2.69
511 512 9.994432 CTTAATTTCTTGTATAGCTGAGGTTTG 57.006 33.333 0.00 0.00 0.00 2.93
512 513 9.959721 TCTTAATTTCTTGTATAGCTGAGGTTT 57.040 29.630 0.00 0.00 0.00 3.27
513 514 9.606631 CTCTTAATTTCTTGTATAGCTGAGGTT 57.393 33.333 0.00 0.00 0.00 3.50
514 515 8.982723 TCTCTTAATTTCTTGTATAGCTGAGGT 58.017 33.333 0.00 0.00 0.00 3.85
515 516 9.255304 GTCTCTTAATTTCTTGTATAGCTGAGG 57.745 37.037 0.00 0.00 0.00 3.86
516 517 9.809096 TGTCTCTTAATTTCTTGTATAGCTGAG 57.191 33.333 0.00 0.00 0.00 3.35
522 523 9.976511 CGGGTATGTCTCTTAATTTCTTGTATA 57.023 33.333 0.00 0.00 0.00 1.47
523 524 8.701895 TCGGGTATGTCTCTTAATTTCTTGTAT 58.298 33.333 0.00 0.00 0.00 2.29
524 525 8.070034 TCGGGTATGTCTCTTAATTTCTTGTA 57.930 34.615 0.00 0.00 0.00 2.41
525 526 6.942976 TCGGGTATGTCTCTTAATTTCTTGT 58.057 36.000 0.00 0.00 0.00 3.16
526 527 8.979574 GTATCGGGTATGTCTCTTAATTTCTTG 58.020 37.037 0.00 0.00 0.00 3.02
527 528 8.701895 TGTATCGGGTATGTCTCTTAATTTCTT 58.298 33.333 0.00 0.00 0.00 2.52
528 529 8.246430 TGTATCGGGTATGTCTCTTAATTTCT 57.754 34.615 0.00 0.00 0.00 2.52
529 530 8.882415 TTGTATCGGGTATGTCTCTTAATTTC 57.118 34.615 0.00 0.00 0.00 2.17
530 531 9.675464 TTTTGTATCGGGTATGTCTCTTAATTT 57.325 29.630 0.00 0.00 0.00 1.82
531 532 9.847224 ATTTTGTATCGGGTATGTCTCTTAATT 57.153 29.630 0.00 0.00 0.00 1.40
534 535 9.923143 CATATTTTGTATCGGGTATGTCTCTTA 57.077 33.333 0.00 0.00 0.00 2.10
535 536 7.878127 CCATATTTTGTATCGGGTATGTCTCTT 59.122 37.037 0.00 0.00 0.00 2.85
536 537 7.234782 TCCATATTTTGTATCGGGTATGTCTCT 59.765 37.037 0.00 0.00 0.00 3.10
537 538 7.331193 GTCCATATTTTGTATCGGGTATGTCTC 59.669 40.741 0.00 0.00 0.00 3.36
538 539 7.159372 GTCCATATTTTGTATCGGGTATGTCT 58.841 38.462 0.00 0.00 0.00 3.41
539 540 6.932400 TGTCCATATTTTGTATCGGGTATGTC 59.068 38.462 0.00 0.00 0.00 3.06
540 541 6.708949 GTGTCCATATTTTGTATCGGGTATGT 59.291 38.462 0.00 0.00 0.00 2.29
541 542 6.708502 TGTGTCCATATTTTGTATCGGGTATG 59.291 38.462 0.00 0.00 0.00 2.39
542 543 6.833041 TGTGTCCATATTTTGTATCGGGTAT 58.167 36.000 0.00 0.00 0.00 2.73
543 544 6.236558 TGTGTCCATATTTTGTATCGGGTA 57.763 37.500 0.00 0.00 0.00 3.69
544 545 5.105567 TGTGTCCATATTTTGTATCGGGT 57.894 39.130 0.00 0.00 0.00 5.28
545 546 6.633500 ATTGTGTCCATATTTTGTATCGGG 57.367 37.500 0.00 0.00 0.00 5.14
546 547 8.148807 TGTATTGTGTCCATATTTTGTATCGG 57.851 34.615 0.00 0.00 0.00 4.18
558 559 9.851686 ATTGTTGAGTATATGTATTGTGTCCAT 57.148 29.630 0.00 0.00 0.00 3.41
559 560 9.108284 CATTGTTGAGTATATGTATTGTGTCCA 57.892 33.333 0.00 0.00 0.00 4.02
560 561 9.109393 ACATTGTTGAGTATATGTATTGTGTCC 57.891 33.333 0.00 0.00 29.93 4.02
562 563 9.890629 AGACATTGTTGAGTATATGTATTGTGT 57.109 29.630 0.00 0.00 31.76 3.72
566 567 9.692749 CGGTAGACATTGTTGAGTATATGTATT 57.307 33.333 0.00 0.00 31.76 1.89
567 568 8.304596 CCGGTAGACATTGTTGAGTATATGTAT 58.695 37.037 0.00 0.00 31.76 2.29
568 569 7.503230 TCCGGTAGACATTGTTGAGTATATGTA 59.497 37.037 0.00 0.00 31.76 2.29
569 570 6.322969 TCCGGTAGACATTGTTGAGTATATGT 59.677 38.462 0.00 0.00 34.14 2.29
570 571 6.745116 TCCGGTAGACATTGTTGAGTATATG 58.255 40.000 0.00 0.00 0.00 1.78
571 572 6.971726 TCCGGTAGACATTGTTGAGTATAT 57.028 37.500 0.00 0.00 0.00 0.86
572 573 6.971726 ATCCGGTAGACATTGTTGAGTATA 57.028 37.500 0.00 0.00 0.00 1.47
573 574 5.871396 ATCCGGTAGACATTGTTGAGTAT 57.129 39.130 0.00 0.00 0.00 2.12
574 575 5.670792 AATCCGGTAGACATTGTTGAGTA 57.329 39.130 0.00 0.00 0.00 2.59
575 576 4.553330 AATCCGGTAGACATTGTTGAGT 57.447 40.909 0.00 0.00 0.00 3.41
576 577 7.516785 CGAATTAATCCGGTAGACATTGTTGAG 60.517 40.741 0.00 0.00 0.00 3.02
577 578 6.256975 CGAATTAATCCGGTAGACATTGTTGA 59.743 38.462 0.00 0.00 0.00 3.18
578 579 6.036735 ACGAATTAATCCGGTAGACATTGTTG 59.963 38.462 0.00 0.00 0.00 3.33
579 580 6.110707 ACGAATTAATCCGGTAGACATTGTT 58.889 36.000 0.00 0.00 0.00 2.83
580 581 5.667466 ACGAATTAATCCGGTAGACATTGT 58.333 37.500 0.00 0.00 0.00 2.71
581 582 6.479001 AGAACGAATTAATCCGGTAGACATTG 59.521 38.462 0.00 0.00 0.00 2.82
582 583 6.579865 AGAACGAATTAATCCGGTAGACATT 58.420 36.000 0.00 0.00 0.00 2.71
583 584 6.158023 AGAACGAATTAATCCGGTAGACAT 57.842 37.500 0.00 0.00 0.00 3.06
584 585 5.587388 AGAACGAATTAATCCGGTAGACA 57.413 39.130 0.00 0.00 0.00 3.41
673 679 5.221303 CCCTATCATTTGATCGTGGCAATTT 60.221 40.000 0.00 0.00 36.05 1.82
680 686 5.207110 ACTCTCCCTATCATTTGATCGTG 57.793 43.478 0.00 0.00 36.05 4.35
721 732 1.757423 ATTGGGCTTGTGTGTTGGGC 61.757 55.000 0.00 0.00 0.00 5.36
724 735 0.318120 GGGATTGGGCTTGTGTGTTG 59.682 55.000 0.00 0.00 0.00 3.33
725 736 0.831711 GGGGATTGGGCTTGTGTGTT 60.832 55.000 0.00 0.00 0.00 3.32
726 737 1.228862 GGGGATTGGGCTTGTGTGT 60.229 57.895 0.00 0.00 0.00 3.72
753 805 5.896073 AAGTATTGACATCTAGAAGGGGG 57.104 43.478 0.00 0.00 0.00 5.40
755 807 6.100424 AGGGAAAGTATTGACATCTAGAAGGG 59.900 42.308 0.00 0.00 0.00 3.95
756 808 7.130681 AGGGAAAGTATTGACATCTAGAAGG 57.869 40.000 0.00 0.00 0.00 3.46
757 809 6.920758 CGAGGGAAAGTATTGACATCTAGAAG 59.079 42.308 0.00 0.00 0.00 2.85
758 810 6.183360 CCGAGGGAAAGTATTGACATCTAGAA 60.183 42.308 0.00 0.00 0.00 2.10
821 893 1.895798 CTTGCCTATCTATCGGGCTCA 59.104 52.381 0.00 0.00 45.45 4.26
843 915 4.547859 CCAATCTTGGGGCTCTCG 57.452 61.111 0.73 0.00 44.70 4.04
943 1018 1.396996 GATCTGTAACGCCACGCAAAT 59.603 47.619 0.00 0.00 0.00 2.32
1285 1360 4.853050 AGCATCTCAGCTGCCGCC 62.853 66.667 9.47 0.00 44.66 6.13
1975 2050 6.649155 TGAAAAGAATTCCTCATCCGTCATA 58.351 36.000 0.65 0.00 0.00 2.15
2020 2095 1.186200 CATCGAACCCCTCACTCTCA 58.814 55.000 0.00 0.00 0.00 3.27
2355 2430 9.559958 GTTTAGTTTGTACATTTGATGGAGATG 57.440 33.333 0.00 0.00 33.60 2.90
2655 2730 5.299531 GCTCTTACCTTGACTGGAAAAGTTT 59.700 40.000 0.00 0.00 40.07 2.66
2914 3011 9.226345 GTGTACAGATATGTTAACTACGGTTAC 57.774 37.037 7.22 1.87 37.61 2.50
2981 4992 6.095432 AGTATCCACATGAATCTACAGAGC 57.905 41.667 0.00 0.00 0.00 4.09
3236 5291 7.667575 AGATATCATATATGGGGTGACACTC 57.332 40.000 12.78 0.00 31.84 3.51
3398 5455 5.411053 TGAATTGTTATGCATCTCACGTTCA 59.589 36.000 0.19 12.93 0.00 3.18
3737 5795 4.109050 GTGCGTGGTTTTCTTTTTCATGA 58.891 39.130 0.00 0.00 0.00 3.07
3908 5966 1.726248 GCACCATTGGAATGCGTTTTC 59.274 47.619 10.37 0.00 35.08 2.29
4160 6218 9.081204 TGTTCCTATGAAAACTAGTACAGTACA 57.919 33.333 13.37 0.00 36.04 2.90
4197 6255 0.401356 TTCTTCACATGAGGCTGGCA 59.599 50.000 0.00 0.00 0.00 4.92
4198 6256 1.674962 GATTCTTCACATGAGGCTGGC 59.325 52.381 0.00 0.00 0.00 4.85
4764 6822 1.647084 GCAAACCCGCGACATATCC 59.353 57.895 8.23 0.00 0.00 2.59
4884 6946 3.086818 TGTTTCTCGACATTCGACACA 57.913 42.857 0.00 0.00 44.82 3.72
5098 7160 9.494055 CCCTCCTAACCATCTCTCATAATAATA 57.506 37.037 0.00 0.00 0.00 0.98
5099 7161 7.964293 ACCCTCCTAACCATCTCTCATAATAAT 59.036 37.037 0.00 0.00 0.00 1.28
5100 7162 7.313731 ACCCTCCTAACCATCTCTCATAATAA 58.686 38.462 0.00 0.00 0.00 1.40
5101 7163 6.875469 ACCCTCCTAACCATCTCTCATAATA 58.125 40.000 0.00 0.00 0.00 0.98
5102 7164 5.731924 ACCCTCCTAACCATCTCTCATAAT 58.268 41.667 0.00 0.00 0.00 1.28
5103 7165 5.157770 ACCCTCCTAACCATCTCTCATAA 57.842 43.478 0.00 0.00 0.00 1.90
5104 7166 4.834406 ACCCTCCTAACCATCTCTCATA 57.166 45.455 0.00 0.00 0.00 2.15
5105 7167 3.715648 ACCCTCCTAACCATCTCTCAT 57.284 47.619 0.00 0.00 0.00 2.90
5106 7168 4.620086 TTACCCTCCTAACCATCTCTCA 57.380 45.455 0.00 0.00 0.00 3.27
5107 7169 4.284746 CCATTACCCTCCTAACCATCTCTC 59.715 50.000 0.00 0.00 0.00 3.20
5108 7170 4.235372 CCATTACCCTCCTAACCATCTCT 58.765 47.826 0.00 0.00 0.00 3.10
5143 7205 5.015178 TGAGGTTTGAGGTTTGATCCCTAAT 59.985 40.000 0.00 0.00 30.60 1.73
5144 7206 4.352595 TGAGGTTTGAGGTTTGATCCCTAA 59.647 41.667 0.00 0.00 30.60 2.69
5348 7639 2.357637 TGGCCTCTTTTTCAGAAACACG 59.642 45.455 3.32 0.00 0.00 4.49
5451 10255 1.614241 AAGAGGTTAGACGCCCGCAT 61.614 55.000 0.00 0.00 0.00 4.73
5482 10286 6.406370 ACCAAATTGATAAGATGACTCGTGA 58.594 36.000 0.00 0.00 0.00 4.35
5486 10290 7.093322 AGCAACCAAATTGATAAGATGACTC 57.907 36.000 0.00 0.00 41.23 3.36
5614 11658 2.779506 AGAAAAAGGTTAGTCGCCCTG 58.220 47.619 0.00 0.00 0.00 4.45
5679 11723 8.144478 GTGCATCTTATTTATACAGAGACTGGA 58.856 37.037 0.00 0.00 35.51 3.86
5681 11725 8.759641 GTGTGCATCTTATTTATACAGAGACTG 58.240 37.037 0.00 0.00 37.52 3.51
5684 11728 6.923508 CCGTGTGCATCTTATTTATACAGAGA 59.076 38.462 0.00 0.00 0.00 3.10
5710 11754 5.163561 GGTTGTGTGAGAGGATTTTGTTTGA 60.164 40.000 0.00 0.00 0.00 2.69
5742 11787 1.136690 CGCTTAAGCTCACACGTCAA 58.863 50.000 24.33 0.00 39.32 3.18
5747 11792 0.108329 TAGGCCGCTTAAGCTCACAC 60.108 55.000 24.33 10.43 39.32 3.82
5754 11799 0.106149 ACCCGATTAGGCCGCTTAAG 59.894 55.000 0.00 0.00 39.21 1.85
5801 11846 5.304686 ACTTGTGGTCATTACTCCAAAGA 57.695 39.130 0.00 0.00 35.38 2.52
5850 11895 6.227298 AGATGAATTAGGATCACTGACGTT 57.773 37.500 0.00 0.00 0.00 3.99
5913 11958 1.967319 ATTTGTTGAGTGTGTCGGCT 58.033 45.000 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.