Multiple sequence alignment - TraesCS2A01G236400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G236400 chr2A 100.000 3161 0 0 1 3161 303744076 303740916 0.000000e+00 5838.0
1 TraesCS2A01G236400 chr2A 98.000 100 1 1 2613 2711 303741365 303741266 4.190000e-39 172.0
2 TraesCS2A01G236400 chr2A 98.000 100 1 1 2712 2811 303741464 303741366 4.190000e-39 172.0
3 TraesCS2A01G236400 chr3B 92.165 2757 120 28 1 2711 131572408 131575114 0.000000e+00 3807.0
4 TraesCS2A01G236400 chr3B 82.143 672 95 15 1604 2258 578621522 578620859 1.280000e-153 553.0
5 TraesCS2A01G236400 chr3B 96.257 187 6 1 2712 2898 131575016 131575201 3.960000e-79 305.0
6 TraesCS2A01G236400 chr3B 83.582 201 31 2 717 916 578623729 578623530 1.500000e-43 187.0
7 TraesCS2A01G236400 chr7B 90.741 2592 161 17 1 2562 680122614 680125156 0.000000e+00 3384.0
8 TraesCS2A01G236400 chr7B 93.548 186 11 1 2712 2897 680125383 680125567 3.110000e-70 276.0
9 TraesCS2A01G236400 chr7B 95.513 156 7 0 2556 2711 680125326 680125481 1.880000e-62 250.0
10 TraesCS2A01G236400 chr4A 92.444 900 62 5 21 916 136860240 136861137 0.000000e+00 1280.0
11 TraesCS2A01G236400 chr4A 86.821 865 65 17 1257 2111 136873592 136874417 0.000000e+00 920.0
12 TraesCS2A01G236400 chr4A 84.974 579 45 16 2158 2711 136874422 136874983 1.660000e-152 549.0
13 TraesCS2A01G236400 chr1A 81.295 1251 177 33 1069 2298 29194248 29193034 0.000000e+00 961.0
14 TraesCS2A01G236400 chr1A 86.186 333 45 1 1205 1536 155081615 155081947 3.000000e-95 359.0
15 TraesCS2A01G236400 chr6B 82.159 1121 170 19 1191 2295 567601240 567602346 0.000000e+00 935.0
16 TraesCS2A01G236400 chr6B 79.403 335 64 5 580 913 567599388 567599718 6.820000e-57 231.0
17 TraesCS2A01G236400 chr6B 90.000 160 11 5 969 1127 567601043 567601198 5.350000e-48 202.0
18 TraesCS2A01G236400 chr6B 84.091 176 21 6 2079 2247 32737972 32737797 2.520000e-36 163.0
19 TraesCS2A01G236400 chr5B 81.858 1130 162 24 1182 2295 490356456 490357558 0.000000e+00 911.0
20 TraesCS2A01G236400 chr5B 83.951 162 25 1 2736 2897 490357840 490358000 1.520000e-33 154.0
21 TraesCS2A01G236400 chr5D 81.207 878 117 26 969 1842 559668885 559668052 0.000000e+00 664.0
22 TraesCS2A01G236400 chr3A 86.429 560 71 4 1000 1557 359579888 359580444 2.700000e-170 608.0
23 TraesCS2A01G236400 chr3A 76.735 533 112 11 292 818 359579366 359579892 1.430000e-73 287.0
24 TraesCS2A01G236400 chr4D 83.710 663 84 12 1604 2252 278249994 278249342 3.490000e-169 604.0
25 TraesCS2A01G236400 chr4D 83.150 546 74 9 959 1503 278250638 278250110 1.700000e-132 483.0
26 TraesCS2A01G236400 chr2D 83.408 669 86 13 1604 2257 500490946 500490288 5.840000e-167 597.0
27 TraesCS2A01G236400 chr2D 83.700 546 72 13 959 1504 500491589 500491061 1.690000e-137 499.0
28 TraesCS2A01G236400 chr2D 94.074 270 11 2 2897 3161 262459456 262459187 3.800000e-109 405.0
29 TraesCS2A01G236400 chr6D 82.578 706 94 16 1037 1735 129172486 129171803 2.100000e-166 595.0
30 TraesCS2A01G236400 chr6D 81.720 186 31 2 2713 2897 18663862 18664045 5.460000e-33 152.0
31 TraesCS2A01G236400 chr6D 81.379 145 24 3 2568 2711 18663817 18663959 7.160000e-22 115.0
32 TraesCS2A01G236400 chr3D 80.370 810 117 29 959 1748 419870686 419869899 7.600000e-161 577.0
33 TraesCS2A01G236400 chr3D 81.937 537 70 17 1737 2257 419842800 419842275 2.250000e-116 429.0
34 TraesCS2A01G236400 chr3D 85.946 185 25 1 2713 2897 419841922 419841739 2.490000e-46 196.0
35 TraesCS2A01G236400 chr4B 82.407 648 90 14 1493 2127 622813865 622814501 7.710000e-151 544.0
36 TraesCS2A01G236400 chr4B 81.575 673 98 16 1604 2258 476945105 476944441 1.670000e-147 532.0
37 TraesCS2A01G236400 chr4B 91.071 56 3 2 2844 2898 14398056 14398002 1.220000e-09 75.0
38 TraesCS2A01G236400 chr6A 85.784 204 24 2 714 916 28929569 28929370 8.880000e-51 211.0
39 TraesCS2A01G236400 chr6A 85.366 205 23 4 714 916 28899847 28899648 4.130000e-49 206.0
40 TraesCS2A01G236400 chr6A 85.294 204 23 4 714 916 28957586 28957389 1.490000e-48 204.0
41 TraesCS2A01G236400 chr5A 91.241 137 11 1 968 1104 331864880 331865015 5.380000e-43 185.0
42 TraesCS2A01G236400 chr5A 90.385 52 3 2 2845 2895 56853805 56853855 2.030000e-07 67.6
43 TraesCS2A01G236400 chr1B 75.275 364 57 15 2355 2711 10554428 10554765 3.290000e-30 143.0
44 TraesCS2A01G236400 chrUn 90.789 76 7 0 2822 2897 461765032 461764957 5.580000e-18 102.0
45 TraesCS2A01G236400 chr2B 90.566 53 3 2 2844 2895 6723016 6722965 5.660000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G236400 chr2A 303740916 303744076 3160 True 2060.666667 5838 98.666667 1 3161 3 chr2A.!!$R1 3160
1 TraesCS2A01G236400 chr3B 131572408 131575201 2793 False 2056.000000 3807 94.211000 1 2898 2 chr3B.!!$F1 2897
2 TraesCS2A01G236400 chr3B 578620859 578623729 2870 True 370.000000 553 82.862500 717 2258 2 chr3B.!!$R1 1541
3 TraesCS2A01G236400 chr7B 680122614 680125567 2953 False 1303.333333 3384 93.267333 1 2897 3 chr7B.!!$F1 2896
4 TraesCS2A01G236400 chr4A 136860240 136861137 897 False 1280.000000 1280 92.444000 21 916 1 chr4A.!!$F1 895
5 TraesCS2A01G236400 chr4A 136873592 136874983 1391 False 734.500000 920 85.897500 1257 2711 2 chr4A.!!$F2 1454
6 TraesCS2A01G236400 chr1A 29193034 29194248 1214 True 961.000000 961 81.295000 1069 2298 1 chr1A.!!$R1 1229
7 TraesCS2A01G236400 chr6B 567599388 567602346 2958 False 456.000000 935 83.854000 580 2295 3 chr6B.!!$F1 1715
8 TraesCS2A01G236400 chr5B 490356456 490358000 1544 False 532.500000 911 82.904500 1182 2897 2 chr5B.!!$F1 1715
9 TraesCS2A01G236400 chr5D 559668052 559668885 833 True 664.000000 664 81.207000 969 1842 1 chr5D.!!$R1 873
10 TraesCS2A01G236400 chr3A 359579366 359580444 1078 False 447.500000 608 81.582000 292 1557 2 chr3A.!!$F1 1265
11 TraesCS2A01G236400 chr4D 278249342 278250638 1296 True 543.500000 604 83.430000 959 2252 2 chr4D.!!$R1 1293
12 TraesCS2A01G236400 chr2D 500490288 500491589 1301 True 548.000000 597 83.554000 959 2257 2 chr2D.!!$R2 1298
13 TraesCS2A01G236400 chr6D 129171803 129172486 683 True 595.000000 595 82.578000 1037 1735 1 chr6D.!!$R1 698
14 TraesCS2A01G236400 chr3D 419869899 419870686 787 True 577.000000 577 80.370000 959 1748 1 chr3D.!!$R1 789
15 TraesCS2A01G236400 chr3D 419841739 419842800 1061 True 312.500000 429 83.941500 1737 2897 2 chr3D.!!$R2 1160
16 TraesCS2A01G236400 chr4B 622813865 622814501 636 False 544.000000 544 82.407000 1493 2127 1 chr4B.!!$F1 634
17 TraesCS2A01G236400 chr4B 476944441 476945105 664 True 532.000000 532 81.575000 1604 2258 1 chr4B.!!$R2 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 972 0.527817 GGAGGCCGTCTGAATGTACG 60.528 60.0 0.0 0.0 38.8 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2309 3891 0.038526 TTCCTCGGCTCGTTTCAGAC 60.039 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 1.693606 TGCGGCTCATATGATCTTGGA 59.306 47.619 5.72 0.00 0.00 3.53
110 112 3.277715 TCAAATATTGCGTCTGATGCCA 58.722 40.909 18.51 8.73 0.00 4.92
136 138 2.997897 GGTGCAGACGAGGAGGGT 60.998 66.667 0.00 0.00 0.00 4.34
171 173 6.070424 ACCAATGCAAATCAATCTTCTTGGAT 60.070 34.615 12.83 0.00 35.66 3.41
197 199 8.956426 TCAGGAGGTGATTTTGTTATTTATCAC 58.044 33.333 0.00 0.00 43.76 3.06
213 215 3.559238 ATCACCATGAAACTGTTTCGC 57.441 42.857 23.72 6.86 42.55 4.70
336 341 7.769272 TGAGTATTGCAAAAACCTGAAAAAG 57.231 32.000 1.71 0.00 0.00 2.27
383 388 2.029073 GGCAGCGCGCTAGGAATA 59.971 61.111 36.02 0.00 41.91 1.75
435 444 5.379187 TGTTATGTCATGGCTAATGCATCT 58.621 37.500 0.00 0.00 41.91 2.90
533 546 7.627298 AGATTTTCTGAATCTGTTCCTGATG 57.373 36.000 0.78 0.00 35.79 3.07
623 636 2.106511 ACACCAAGTGTATTGGAGCACT 59.893 45.455 13.36 0.00 45.56 4.40
635 648 1.344393 TGGAGCACTGTATCCATCCCT 60.344 52.381 9.25 0.00 40.70 4.20
704 717 7.815840 TGTTGTTCCTCATTGAACTTGATTA 57.184 32.000 5.61 0.00 43.96 1.75
802 816 0.543646 ATGCCTGCCCTTGAAGCTTT 60.544 50.000 0.00 0.00 0.00 3.51
808 822 1.039856 GCCCTTGAAGCTTTTGTCCA 58.960 50.000 0.00 0.00 0.00 4.02
930 972 0.527817 GGAGGCCGTCTGAATGTACG 60.528 60.000 0.00 0.00 38.80 3.67
1303 2695 5.809719 TGTTTGAAAATTTTGGTGAAGCC 57.190 34.783 8.47 0.00 37.90 4.35
1417 2810 4.341806 TGGTGCAAGAATGAGTTTGTGATT 59.658 37.500 0.00 0.00 0.00 2.57
1609 3026 2.959516 TGACTGCTAATGTTCAGGTCG 58.040 47.619 0.00 0.00 34.76 4.79
1723 3144 1.409241 GCTGCCAGAAGGATCATGGAA 60.409 52.381 0.00 0.00 36.09 3.53
1964 3386 1.308998 CACTTTGGCCGAACTGAGTT 58.691 50.000 0.00 0.00 0.00 3.01
1979 3402 3.701040 ACTGAGTTTGAGCACACCATTTT 59.299 39.130 0.00 0.00 0.00 1.82
1985 3408 1.142474 GAGCACACCATTTTGCAAGC 58.858 50.000 0.00 0.00 41.48 4.01
2037 3467 3.948719 GGGCGTCCCACAAGGTCA 61.949 66.667 9.72 0.00 44.65 4.02
2038 3468 2.668550 GGCGTCCCACAAGGTCAC 60.669 66.667 0.00 0.00 36.75 3.67
2039 3469 2.110213 GCGTCCCACAAGGTCACA 59.890 61.111 0.00 0.00 36.75 3.58
2040 3470 1.525077 GCGTCCCACAAGGTCACAA 60.525 57.895 0.00 0.00 36.75 3.33
2220 3666 0.178981 AGGAACACATGCAGCAACCT 60.179 50.000 0.00 0.00 0.00 3.50
2295 3877 2.361789 GGCTATGTCGCCCTTTGTTAA 58.638 47.619 0.00 0.00 44.41 2.01
2298 3880 4.024302 GGCTATGTCGCCCTTTGTTAATAC 60.024 45.833 0.00 0.00 44.41 1.89
2299 3881 4.814771 GCTATGTCGCCCTTTGTTAATACT 59.185 41.667 0.00 0.00 0.00 2.12
2300 3882 5.277345 GCTATGTCGCCCTTTGTTAATACTG 60.277 44.000 0.00 0.00 0.00 2.74
2301 3883 4.010667 TGTCGCCCTTTGTTAATACTGT 57.989 40.909 0.00 0.00 0.00 3.55
2302 3884 5.149973 TGTCGCCCTTTGTTAATACTGTA 57.850 39.130 0.00 0.00 0.00 2.74
2303 3885 5.172934 TGTCGCCCTTTGTTAATACTGTAG 58.827 41.667 0.00 0.00 0.00 2.74
2304 3886 5.047164 TGTCGCCCTTTGTTAATACTGTAGA 60.047 40.000 0.00 0.00 0.00 2.59
2305 3887 5.870978 GTCGCCCTTTGTTAATACTGTAGAA 59.129 40.000 0.00 0.00 0.00 2.10
2308 3890 6.148150 CGCCCTTTGTTAATACTGTAGAAACA 59.852 38.462 11.54 11.54 0.00 2.83
2322 3904 2.484889 AGAAACAGTCTGAAACGAGCC 58.515 47.619 6.91 0.00 34.29 4.70
2412 4002 0.955428 TGAAATGGACACGGCTGCTC 60.955 55.000 0.00 0.00 0.00 4.26
2459 4049 2.478335 TTTCCAAGCGGCCGGATTCT 62.478 55.000 29.38 12.79 0.00 2.40
2490 4080 2.809696 CAGATCGTAAACCCCAACGTTT 59.190 45.455 0.00 0.00 39.99 3.60
2539 4181 1.300931 GAATATGAGAGCCCGCGCA 60.301 57.895 8.75 0.00 37.52 6.09
2603 4422 6.017211 AGACATGATGGGTAAATGGATTCA 57.983 37.500 0.00 0.00 0.00 2.57
2679 4509 7.562454 AGAAAAATACATAATACGGTGTGGG 57.438 36.000 0.00 0.00 0.00 4.61
2680 4510 6.544564 AGAAAAATACATAATACGGTGTGGGG 59.455 38.462 0.00 0.00 0.00 4.96
2681 4511 2.914695 TACATAATACGGTGTGGGGC 57.085 50.000 0.00 0.00 0.00 5.80
2682 4512 0.179067 ACATAATACGGTGTGGGGCG 60.179 55.000 0.00 0.00 0.00 6.13
2683 4513 0.179067 CATAATACGGTGTGGGGCGT 60.179 55.000 0.00 0.00 0.00 5.68
2684 4514 1.068895 CATAATACGGTGTGGGGCGTA 59.931 52.381 0.00 0.00 0.00 4.42
2685 4515 1.412079 TAATACGGTGTGGGGCGTAT 58.588 50.000 0.00 0.00 0.00 3.06
2686 4516 1.412079 AATACGGTGTGGGGCGTATA 58.588 50.000 0.00 0.00 0.00 1.47
2687 4517 0.963962 ATACGGTGTGGGGCGTATAG 59.036 55.000 0.00 0.00 0.00 1.31
2707 4537 2.814269 GCTGTGAGCTCGAATACATGA 58.186 47.619 9.64 0.00 38.45 3.07
2708 4538 2.537625 GCTGTGAGCTCGAATACATGAC 59.462 50.000 9.64 0.00 38.45 3.06
2709 4539 3.774066 CTGTGAGCTCGAATACATGACA 58.226 45.455 9.64 3.45 0.00 3.58
2710 4540 4.366586 CTGTGAGCTCGAATACATGACAT 58.633 43.478 9.64 0.00 0.00 3.06
2711 4541 4.114794 TGTGAGCTCGAATACATGACATG 58.885 43.478 14.02 14.02 0.00 3.21
2712 4542 3.060003 GTGAGCTCGAATACATGACATGC 60.060 47.826 15.49 0.00 0.00 4.06
2713 4543 2.478134 GAGCTCGAATACATGACATGCC 59.522 50.000 15.49 2.04 0.00 4.40
2714 4544 2.158914 AGCTCGAATACATGACATGCCA 60.159 45.455 15.49 4.11 0.00 4.92
2715 4545 2.222678 GCTCGAATACATGACATGCCAG 59.777 50.000 15.49 3.41 0.00 4.85
2716 4546 2.212652 TCGAATACATGACATGCCAGC 58.787 47.619 15.49 2.55 0.00 4.85
2717 4547 1.265095 CGAATACATGACATGCCAGCC 59.735 52.381 15.49 1.04 0.00 4.85
2718 4548 2.579873 GAATACATGACATGCCAGCCT 58.420 47.619 15.49 0.00 0.00 4.58
2719 4549 1.977056 ATACATGACATGCCAGCCTG 58.023 50.000 15.49 0.00 0.00 4.85
2720 4550 0.749091 TACATGACATGCCAGCCTGC 60.749 55.000 15.49 0.00 0.00 4.85
2721 4551 2.441532 ATGACATGCCAGCCTGCC 60.442 61.111 0.00 0.00 0.00 4.85
2722 4552 3.291031 ATGACATGCCAGCCTGCCA 62.291 57.895 0.00 0.00 0.00 4.92
2723 4553 3.138798 GACATGCCAGCCTGCCAG 61.139 66.667 0.00 0.00 0.00 4.85
2738 4568 2.202544 CAGCGAGCTCTGGACGAC 60.203 66.667 12.85 0.00 0.00 4.34
2739 4569 2.673341 AGCGAGCTCTGGACGACA 60.673 61.111 12.85 0.00 0.00 4.35
2740 4570 2.049185 AGCGAGCTCTGGACGACAT 61.049 57.895 12.85 0.00 0.00 3.06
2741 4571 1.875813 GCGAGCTCTGGACGACATG 60.876 63.158 12.85 0.00 0.00 3.21
2742 4572 1.226802 CGAGCTCTGGACGACATGG 60.227 63.158 12.85 0.00 0.00 3.66
2743 4573 1.142748 GAGCTCTGGACGACATGGG 59.857 63.158 6.43 0.00 0.00 4.00
2744 4574 1.305297 AGCTCTGGACGACATGGGA 60.305 57.895 0.00 0.00 0.00 4.37
2745 4575 0.689080 AGCTCTGGACGACATGGGAT 60.689 55.000 0.00 0.00 0.00 3.85
2746 4576 0.531532 GCTCTGGACGACATGGGATG 60.532 60.000 0.00 0.00 0.00 3.51
2747 4577 0.531532 CTCTGGACGACATGGGATGC 60.532 60.000 0.00 0.00 0.00 3.91
2748 4578 0.977627 TCTGGACGACATGGGATGCT 60.978 55.000 0.00 0.00 0.00 3.79
2749 4579 0.752658 CTGGACGACATGGGATGCTA 59.247 55.000 0.00 0.00 0.00 3.49
2750 4580 0.464036 TGGACGACATGGGATGCTAC 59.536 55.000 0.00 0.00 0.00 3.58
2751 4581 0.753262 GGACGACATGGGATGCTACT 59.247 55.000 0.00 0.00 0.00 2.57
2752 4582 1.539065 GGACGACATGGGATGCTACTG 60.539 57.143 0.00 0.00 0.00 2.74
2753 4583 1.137086 GACGACATGGGATGCTACTGT 59.863 52.381 0.00 0.00 0.00 3.55
2754 4584 2.361119 GACGACATGGGATGCTACTGTA 59.639 50.000 0.00 0.00 0.00 2.74
2755 4585 2.362397 ACGACATGGGATGCTACTGTAG 59.638 50.000 10.48 10.48 0.00 2.74
2756 4586 2.623416 CGACATGGGATGCTACTGTAGA 59.377 50.000 18.64 4.46 0.00 2.59
2757 4587 3.068165 CGACATGGGATGCTACTGTAGAA 59.932 47.826 18.64 8.63 0.00 2.10
2758 4588 4.441495 CGACATGGGATGCTACTGTAGAAA 60.441 45.833 18.64 6.10 0.00 2.52
2759 4589 5.428253 GACATGGGATGCTACTGTAGAAAA 58.572 41.667 18.64 3.65 0.00 2.29
2760 4590 5.815581 ACATGGGATGCTACTGTAGAAAAA 58.184 37.500 18.64 1.25 0.00 1.94
2761 4591 6.426587 ACATGGGATGCTACTGTAGAAAAAT 58.573 36.000 18.64 5.86 0.00 1.82
2762 4592 7.573710 ACATGGGATGCTACTGTAGAAAAATA 58.426 34.615 18.64 1.04 0.00 1.40
2763 4593 7.499232 ACATGGGATGCTACTGTAGAAAAATAC 59.501 37.037 18.64 6.49 0.00 1.89
2764 4594 6.953101 TGGGATGCTACTGTAGAAAAATACA 58.047 36.000 18.64 5.40 34.55 2.29
2765 4595 7.573710 TGGGATGCTACTGTAGAAAAATACAT 58.426 34.615 18.64 9.74 35.21 2.29
2766 4596 8.710239 TGGGATGCTACTGTAGAAAAATACATA 58.290 33.333 18.64 0.00 35.21 2.29
2767 4597 9.555727 GGGATGCTACTGTAGAAAAATACATAA 57.444 33.333 18.64 0.00 35.21 1.90
2775 4605 9.880157 ACTGTAGAAAAATACATAATACGGTGT 57.120 29.630 0.00 0.00 35.21 4.16
2898 4728 1.000385 CCTCCAAACAGCATTTTCGCA 60.000 47.619 0.00 0.00 0.00 5.10
2899 4729 2.053627 CTCCAAACAGCATTTTCGCAC 58.946 47.619 0.00 0.00 0.00 5.34
2900 4730 1.406898 TCCAAACAGCATTTTCGCACA 59.593 42.857 0.00 0.00 0.00 4.57
2901 4731 2.159184 TCCAAACAGCATTTTCGCACAA 60.159 40.909 0.00 0.00 0.00 3.33
2902 4732 2.606725 CCAAACAGCATTTTCGCACAAA 59.393 40.909 0.00 0.00 0.00 2.83
2903 4733 3.248125 CCAAACAGCATTTTCGCACAAAT 59.752 39.130 0.00 0.00 0.00 2.32
2904 4734 4.260702 CCAAACAGCATTTTCGCACAAATT 60.261 37.500 0.00 0.00 0.00 1.82
2905 4735 4.713854 AACAGCATTTTCGCACAAATTC 57.286 36.364 0.00 0.00 0.00 2.17
2906 4736 3.059166 ACAGCATTTTCGCACAAATTCC 58.941 40.909 0.00 0.00 0.00 3.01
2907 4737 3.243839 ACAGCATTTTCGCACAAATTCCT 60.244 39.130 0.00 0.00 0.00 3.36
2908 4738 3.365820 CAGCATTTTCGCACAAATTCCTC 59.634 43.478 0.00 0.00 0.00 3.71
2909 4739 2.667969 GCATTTTCGCACAAATTCCTCC 59.332 45.455 0.00 0.00 0.00 4.30
2910 4740 3.614870 GCATTTTCGCACAAATTCCTCCT 60.615 43.478 0.00 0.00 0.00 3.69
2911 4741 4.559153 CATTTTCGCACAAATTCCTCCTT 58.441 39.130 0.00 0.00 0.00 3.36
2912 4742 4.664150 TTTTCGCACAAATTCCTCCTTT 57.336 36.364 0.00 0.00 0.00 3.11
2913 4743 5.776173 TTTTCGCACAAATTCCTCCTTTA 57.224 34.783 0.00 0.00 0.00 1.85
2914 4744 5.776173 TTTCGCACAAATTCCTCCTTTAA 57.224 34.783 0.00 0.00 0.00 1.52
2915 4745 5.371115 TTCGCACAAATTCCTCCTTTAAG 57.629 39.130 0.00 0.00 0.00 1.85
2916 4746 3.190535 TCGCACAAATTCCTCCTTTAAGC 59.809 43.478 0.00 0.00 0.00 3.09
2917 4747 3.673323 CGCACAAATTCCTCCTTTAAGCC 60.673 47.826 0.00 0.00 0.00 4.35
2918 4748 3.258123 GCACAAATTCCTCCTTTAAGCCA 59.742 43.478 0.00 0.00 0.00 4.75
2919 4749 4.809673 CACAAATTCCTCCTTTAAGCCAC 58.190 43.478 0.00 0.00 0.00 5.01
2920 4750 4.280677 CACAAATTCCTCCTTTAAGCCACA 59.719 41.667 0.00 0.00 0.00 4.17
2921 4751 4.898861 ACAAATTCCTCCTTTAAGCCACAA 59.101 37.500 0.00 0.00 0.00 3.33
2922 4752 5.365314 ACAAATTCCTCCTTTAAGCCACAAA 59.635 36.000 0.00 0.00 0.00 2.83
2923 4753 6.126911 ACAAATTCCTCCTTTAAGCCACAAAA 60.127 34.615 0.00 0.00 0.00 2.44
2924 4754 6.493189 AATTCCTCCTTTAAGCCACAAAAA 57.507 33.333 0.00 0.00 0.00 1.94
2925 4755 4.929819 TCCTCCTTTAAGCCACAAAAAC 57.070 40.909 0.00 0.00 0.00 2.43
2926 4756 4.282496 TCCTCCTTTAAGCCACAAAAACA 58.718 39.130 0.00 0.00 0.00 2.83
2927 4757 4.898861 TCCTCCTTTAAGCCACAAAAACAT 59.101 37.500 0.00 0.00 0.00 2.71
2928 4758 4.990426 CCTCCTTTAAGCCACAAAAACATG 59.010 41.667 0.00 0.00 0.00 3.21
2929 4759 4.954875 TCCTTTAAGCCACAAAAACATGG 58.045 39.130 0.00 0.00 39.16 3.66
2938 4768 5.692613 CCACAAAAACATGGCAATTTCAT 57.307 34.783 0.00 0.00 0.00 2.57
2939 4769 5.453648 CCACAAAAACATGGCAATTTCATG 58.546 37.500 13.89 13.89 45.31 3.07
2949 4779 7.869016 CATGGCAATTTCATGTCATATCTTC 57.131 36.000 0.00 0.00 43.48 2.87
2950 4780 6.395426 TGGCAATTTCATGTCATATCTTCC 57.605 37.500 0.00 0.00 28.02 3.46
2951 4781 5.302568 TGGCAATTTCATGTCATATCTTCCC 59.697 40.000 0.00 0.00 28.02 3.97
2952 4782 5.537674 GGCAATTTCATGTCATATCTTCCCT 59.462 40.000 0.00 0.00 0.00 4.20
2953 4783 6.041296 GGCAATTTCATGTCATATCTTCCCTT 59.959 38.462 0.00 0.00 0.00 3.95
2954 4784 6.921857 GCAATTTCATGTCATATCTTCCCTTG 59.078 38.462 0.00 0.00 0.00 3.61
2955 4785 7.417116 GCAATTTCATGTCATATCTTCCCTTGT 60.417 37.037 0.00 0.00 0.00 3.16
2956 4786 9.123902 CAATTTCATGTCATATCTTCCCTTGTA 57.876 33.333 0.00 0.00 0.00 2.41
2957 4787 8.915057 ATTTCATGTCATATCTTCCCTTGTAG 57.085 34.615 0.00 0.00 0.00 2.74
2958 4788 7.437713 TTCATGTCATATCTTCCCTTGTAGT 57.562 36.000 0.00 0.00 0.00 2.73
2959 4789 6.820335 TCATGTCATATCTTCCCTTGTAGTG 58.180 40.000 0.00 0.00 0.00 2.74
2960 4790 6.384015 TCATGTCATATCTTCCCTTGTAGTGT 59.616 38.462 0.00 0.00 0.00 3.55
2961 4791 7.563556 TCATGTCATATCTTCCCTTGTAGTGTA 59.436 37.037 0.00 0.00 0.00 2.90
2962 4792 7.108841 TGTCATATCTTCCCTTGTAGTGTAC 57.891 40.000 0.00 0.00 0.00 2.90
2963 4793 6.666113 TGTCATATCTTCCCTTGTAGTGTACA 59.334 38.462 0.00 0.00 36.79 2.90
2964 4794 6.979238 GTCATATCTTCCCTTGTAGTGTACAC 59.021 42.308 18.56 18.56 38.63 2.90
2965 4795 6.666113 TCATATCTTCCCTTGTAGTGTACACA 59.334 38.462 27.06 10.99 38.63 3.72
2966 4796 5.818678 ATCTTCCCTTGTAGTGTACACAA 57.181 39.130 27.06 12.35 38.63 3.33
2967 4797 5.818678 TCTTCCCTTGTAGTGTACACAAT 57.181 39.130 27.06 10.72 38.63 2.71
2968 4798 6.921486 TCTTCCCTTGTAGTGTACACAATA 57.079 37.500 27.06 9.67 38.63 1.90
2969 4799 7.490657 TCTTCCCTTGTAGTGTACACAATAT 57.509 36.000 27.06 9.61 38.63 1.28
2970 4800 7.553334 TCTTCCCTTGTAGTGTACACAATATC 58.447 38.462 27.06 12.45 38.63 1.63
2971 4801 6.860790 TCCCTTGTAGTGTACACAATATCA 57.139 37.500 27.06 14.61 38.63 2.15
2972 4802 6.636705 TCCCTTGTAGTGTACACAATATCAC 58.363 40.000 27.06 14.20 38.63 3.06
2973 4803 5.518847 CCCTTGTAGTGTACACAATATCACG 59.481 44.000 27.06 14.29 38.63 4.35
2974 4804 5.005394 CCTTGTAGTGTACACAATATCACGC 59.995 44.000 27.06 7.15 38.63 5.34
2975 4805 5.061920 TGTAGTGTACACAATATCACGCA 57.938 39.130 27.06 9.35 36.16 5.24
2976 4806 4.860352 TGTAGTGTACACAATATCACGCAC 59.140 41.667 27.06 9.26 36.16 5.34
2977 4807 4.188247 AGTGTACACAATATCACGCACT 57.812 40.909 27.06 0.00 36.16 4.40
2978 4808 4.566004 AGTGTACACAATATCACGCACTT 58.434 39.130 27.06 0.00 36.16 3.16
2979 4809 4.625742 AGTGTACACAATATCACGCACTTC 59.374 41.667 27.06 0.00 36.16 3.01
2980 4810 4.625742 GTGTACACAATATCACGCACTTCT 59.374 41.667 21.14 0.00 0.00 2.85
2981 4811 5.120208 GTGTACACAATATCACGCACTTCTT 59.880 40.000 21.14 0.00 0.00 2.52
2982 4812 5.699001 TGTACACAATATCACGCACTTCTTT 59.301 36.000 0.00 0.00 0.00 2.52
2983 4813 5.283060 ACACAATATCACGCACTTCTTTC 57.717 39.130 0.00 0.00 0.00 2.62
2984 4814 4.143115 ACACAATATCACGCACTTCTTTCG 60.143 41.667 0.00 0.00 0.00 3.46
2985 4815 3.994392 ACAATATCACGCACTTCTTTCGT 59.006 39.130 0.00 0.00 36.84 3.85
2986 4816 4.451096 ACAATATCACGCACTTCTTTCGTT 59.549 37.500 0.00 0.00 33.84 3.85
2987 4817 5.636121 ACAATATCACGCACTTCTTTCGTTA 59.364 36.000 0.00 0.00 33.84 3.18
2988 4818 5.697848 ATATCACGCACTTCTTTCGTTAC 57.302 39.130 0.00 0.00 33.84 2.50
2989 4819 2.129607 TCACGCACTTCTTTCGTTACC 58.870 47.619 0.00 0.00 33.84 2.85
2990 4820 1.862201 CACGCACTTCTTTCGTTACCA 59.138 47.619 0.00 0.00 33.84 3.25
2991 4821 1.862827 ACGCACTTCTTTCGTTACCAC 59.137 47.619 0.00 0.00 31.89 4.16
2992 4822 1.862201 CGCACTTCTTTCGTTACCACA 59.138 47.619 0.00 0.00 0.00 4.17
2993 4823 2.348218 CGCACTTCTTTCGTTACCACAC 60.348 50.000 0.00 0.00 0.00 3.82
2994 4824 2.610374 GCACTTCTTTCGTTACCACACA 59.390 45.455 0.00 0.00 0.00 3.72
2995 4825 3.545426 GCACTTCTTTCGTTACCACACAC 60.545 47.826 0.00 0.00 0.00 3.82
2996 4826 3.001939 CACTTCTTTCGTTACCACACACC 59.998 47.826 0.00 0.00 0.00 4.16
2997 4827 2.983907 TCTTTCGTTACCACACACCA 57.016 45.000 0.00 0.00 0.00 4.17
2998 4828 3.263489 TCTTTCGTTACCACACACCAA 57.737 42.857 0.00 0.00 0.00 3.67
2999 4829 2.937799 TCTTTCGTTACCACACACCAAC 59.062 45.455 0.00 0.00 0.00 3.77
3000 4830 1.288350 TTCGTTACCACACACCAACG 58.712 50.000 0.00 0.00 43.76 4.10
3001 4831 0.175302 TCGTTACCACACACCAACGT 59.825 50.000 5.72 0.00 43.11 3.99
3002 4832 1.406898 TCGTTACCACACACCAACGTA 59.593 47.619 5.72 0.00 43.11 3.57
3003 4833 1.522258 CGTTACCACACACCAACGTAC 59.478 52.381 0.00 0.00 39.04 3.67
3004 4834 2.548875 GTTACCACACACCAACGTACA 58.451 47.619 0.00 0.00 0.00 2.90
3005 4835 2.222007 TACCACACACCAACGTACAC 57.778 50.000 0.00 0.00 0.00 2.90
3006 4836 0.249676 ACCACACACCAACGTACACA 59.750 50.000 0.00 0.00 0.00 3.72
3007 4837 1.134340 ACCACACACCAACGTACACAT 60.134 47.619 0.00 0.00 0.00 3.21
3008 4838 1.529438 CCACACACCAACGTACACATC 59.471 52.381 0.00 0.00 0.00 3.06
3009 4839 2.205911 CACACACCAACGTACACATCA 58.794 47.619 0.00 0.00 0.00 3.07
3010 4840 2.609916 CACACACCAACGTACACATCAA 59.390 45.455 0.00 0.00 0.00 2.57
3011 4841 3.249799 CACACACCAACGTACACATCAAT 59.750 43.478 0.00 0.00 0.00 2.57
3012 4842 3.496884 ACACACCAACGTACACATCAATC 59.503 43.478 0.00 0.00 0.00 2.67
3013 4843 2.734606 ACACCAACGTACACATCAATCG 59.265 45.455 0.00 0.00 0.00 3.34
3014 4844 2.093625 CACCAACGTACACATCAATCGG 59.906 50.000 0.00 0.00 0.00 4.18
3015 4845 2.289195 ACCAACGTACACATCAATCGGT 60.289 45.455 0.00 0.00 0.00 4.69
3016 4846 3.056678 ACCAACGTACACATCAATCGGTA 60.057 43.478 0.00 0.00 0.00 4.02
3017 4847 3.927758 CCAACGTACACATCAATCGGTAA 59.072 43.478 0.00 0.00 0.00 2.85
3018 4848 4.389382 CCAACGTACACATCAATCGGTAAA 59.611 41.667 0.00 0.00 0.00 2.01
3019 4849 5.064198 CCAACGTACACATCAATCGGTAAAT 59.936 40.000 0.00 0.00 0.00 1.40
3020 4850 6.256104 CCAACGTACACATCAATCGGTAAATA 59.744 38.462 0.00 0.00 0.00 1.40
3021 4851 7.334749 CAACGTACACATCAATCGGTAAATAG 58.665 38.462 0.00 0.00 0.00 1.73
3022 4852 6.567050 ACGTACACATCAATCGGTAAATAGT 58.433 36.000 0.00 0.00 0.00 2.12
3023 4853 7.706159 ACGTACACATCAATCGGTAAATAGTA 58.294 34.615 0.00 0.00 0.00 1.82
3024 4854 8.190122 ACGTACACATCAATCGGTAAATAGTAA 58.810 33.333 0.00 0.00 0.00 2.24
3025 4855 9.022915 CGTACACATCAATCGGTAAATAGTAAA 57.977 33.333 0.00 0.00 0.00 2.01
3027 4857 8.780846 ACACATCAATCGGTAAATAGTAAACA 57.219 30.769 0.00 0.00 0.00 2.83
3028 4858 8.879759 ACACATCAATCGGTAAATAGTAAACAG 58.120 33.333 0.00 0.00 0.00 3.16
3029 4859 9.093970 CACATCAATCGGTAAATAGTAAACAGA 57.906 33.333 0.00 0.00 0.00 3.41
3030 4860 9.661563 ACATCAATCGGTAAATAGTAAACAGAA 57.338 29.630 0.00 0.00 0.00 3.02
3059 4889 5.335127 CAAATCATTGTAAGCAGTACAGGC 58.665 41.667 0.00 0.00 43.61 4.85
3060 4890 3.694043 TCATTGTAAGCAGTACAGGCA 57.306 42.857 11.46 0.00 43.61 4.75
3061 4891 4.014569 TCATTGTAAGCAGTACAGGCAA 57.985 40.909 11.46 1.20 43.61 4.52
3062 4892 4.002982 TCATTGTAAGCAGTACAGGCAAG 58.997 43.478 11.46 0.00 43.61 4.01
3063 4893 3.762407 TTGTAAGCAGTACAGGCAAGA 57.238 42.857 11.46 0.00 43.61 3.02
3064 4894 3.319137 TGTAAGCAGTACAGGCAAGAG 57.681 47.619 11.46 0.00 37.81 2.85
3065 4895 2.897326 TGTAAGCAGTACAGGCAAGAGA 59.103 45.455 11.46 0.00 37.81 3.10
3066 4896 3.323691 TGTAAGCAGTACAGGCAAGAGAA 59.676 43.478 11.46 0.00 37.81 2.87
3067 4897 3.710209 AAGCAGTACAGGCAAGAGAAT 57.290 42.857 11.46 0.00 0.00 2.40
3068 4898 3.258971 AGCAGTACAGGCAAGAGAATC 57.741 47.619 11.46 0.00 0.00 2.52
3069 4899 2.568956 AGCAGTACAGGCAAGAGAATCA 59.431 45.455 11.46 0.00 37.82 2.57
3070 4900 3.008375 AGCAGTACAGGCAAGAGAATCAA 59.992 43.478 11.46 0.00 37.82 2.57
3071 4901 3.373439 GCAGTACAGGCAAGAGAATCAAG 59.627 47.826 4.83 0.00 37.82 3.02
3072 4902 3.373439 CAGTACAGGCAAGAGAATCAAGC 59.627 47.826 0.00 0.00 37.82 4.01
3073 4903 2.875094 ACAGGCAAGAGAATCAAGCT 57.125 45.000 0.00 0.00 37.82 3.74
3074 4904 3.988976 ACAGGCAAGAGAATCAAGCTA 57.011 42.857 0.00 0.00 37.82 3.32
3075 4905 4.500499 ACAGGCAAGAGAATCAAGCTAT 57.500 40.909 0.00 0.00 37.82 2.97
3076 4906 4.450053 ACAGGCAAGAGAATCAAGCTATC 58.550 43.478 0.00 0.00 37.82 2.08
3077 4907 4.080695 ACAGGCAAGAGAATCAAGCTATCA 60.081 41.667 0.00 0.00 37.82 2.15
3078 4908 4.880120 CAGGCAAGAGAATCAAGCTATCAA 59.120 41.667 0.00 0.00 37.82 2.57
3079 4909 5.007823 CAGGCAAGAGAATCAAGCTATCAAG 59.992 44.000 0.00 0.00 37.82 3.02
3080 4910 4.261114 GGCAAGAGAATCAAGCTATCAAGC 60.261 45.833 0.00 0.00 43.98 4.01
3081 4911 4.334759 GCAAGAGAATCAAGCTATCAAGCA 59.665 41.667 0.00 0.00 45.45 3.91
3082 4912 5.163683 GCAAGAGAATCAAGCTATCAAGCAA 60.164 40.000 0.00 0.00 45.45 3.91
3083 4913 6.459848 GCAAGAGAATCAAGCTATCAAGCAAT 60.460 38.462 0.00 0.00 45.45 3.56
3084 4914 6.621316 AGAGAATCAAGCTATCAAGCAATG 57.379 37.500 0.00 0.00 45.45 2.82
3085 4915 6.120905 AGAGAATCAAGCTATCAAGCAATGT 58.879 36.000 0.00 0.00 45.45 2.71
3086 4916 6.602406 AGAGAATCAAGCTATCAAGCAATGTT 59.398 34.615 0.00 0.00 45.45 2.71
3087 4917 7.122353 AGAGAATCAAGCTATCAAGCAATGTTT 59.878 33.333 0.00 0.80 45.45 2.83
3088 4918 7.431668 GAGAATCAAGCTATCAAGCAATGTTTC 59.568 37.037 13.46 13.46 43.37 2.78
3117 4947 5.921962 AAAAGAGAAAGGCTTCAAACAGT 57.078 34.783 0.00 0.00 33.64 3.55
3118 4948 7.404671 AAAAAGAGAAAGGCTTCAAACAGTA 57.595 32.000 0.00 0.00 33.64 2.74
3119 4949 6.625873 AAAGAGAAAGGCTTCAAACAGTAG 57.374 37.500 0.00 0.00 33.64 2.57
3120 4950 5.552870 AGAGAAAGGCTTCAAACAGTAGA 57.447 39.130 0.00 0.00 33.64 2.59
3121 4951 6.120507 AGAGAAAGGCTTCAAACAGTAGAT 57.879 37.500 0.00 0.00 33.64 1.98
3122 4952 7.246171 AGAGAAAGGCTTCAAACAGTAGATA 57.754 36.000 0.00 0.00 33.64 1.98
3123 4953 7.327214 AGAGAAAGGCTTCAAACAGTAGATAG 58.673 38.462 0.00 0.00 33.64 2.08
3124 4954 7.179338 AGAGAAAGGCTTCAAACAGTAGATAGA 59.821 37.037 0.00 0.00 33.64 1.98
3125 4955 7.327214 AGAAAGGCTTCAAACAGTAGATAGAG 58.673 38.462 0.00 0.00 33.64 2.43
3126 4956 5.017294 AGGCTTCAAACAGTAGATAGAGC 57.983 43.478 0.00 0.00 0.00 4.09
3127 4957 4.123506 GGCTTCAAACAGTAGATAGAGCC 58.876 47.826 0.00 0.00 0.00 4.70
3128 4958 4.383118 GGCTTCAAACAGTAGATAGAGCCA 60.383 45.833 5.73 0.00 37.48 4.75
3129 4959 5.178797 GCTTCAAACAGTAGATAGAGCCAA 58.821 41.667 0.00 0.00 0.00 4.52
3130 4960 5.643777 GCTTCAAACAGTAGATAGAGCCAAA 59.356 40.000 0.00 0.00 0.00 3.28
3131 4961 6.402658 GCTTCAAACAGTAGATAGAGCCAAAC 60.403 42.308 0.00 0.00 0.00 2.93
3132 4962 6.109156 TCAAACAGTAGATAGAGCCAAACA 57.891 37.500 0.00 0.00 0.00 2.83
3133 4963 6.530120 TCAAACAGTAGATAGAGCCAAACAA 58.470 36.000 0.00 0.00 0.00 2.83
3134 4964 6.995686 TCAAACAGTAGATAGAGCCAAACAAA 59.004 34.615 0.00 0.00 0.00 2.83
3135 4965 7.500892 TCAAACAGTAGATAGAGCCAAACAAAA 59.499 33.333 0.00 0.00 0.00 2.44
3136 4966 7.440523 AACAGTAGATAGAGCCAAACAAAAG 57.559 36.000 0.00 0.00 0.00 2.27
3137 4967 5.940470 ACAGTAGATAGAGCCAAACAAAAGG 59.060 40.000 0.00 0.00 0.00 3.11
3138 4968 6.173339 CAGTAGATAGAGCCAAACAAAAGGA 58.827 40.000 0.00 0.00 0.00 3.36
3139 4969 6.655003 CAGTAGATAGAGCCAAACAAAAGGAA 59.345 38.462 0.00 0.00 0.00 3.36
3140 4970 7.174946 CAGTAGATAGAGCCAAACAAAAGGAAA 59.825 37.037 0.00 0.00 0.00 3.13
3141 4971 6.581171 AGATAGAGCCAAACAAAAGGAAAG 57.419 37.500 0.00 0.00 0.00 2.62
3142 4972 6.306987 AGATAGAGCCAAACAAAAGGAAAGA 58.693 36.000 0.00 0.00 0.00 2.52
3143 4973 6.777580 AGATAGAGCCAAACAAAAGGAAAGAA 59.222 34.615 0.00 0.00 0.00 2.52
3144 4974 5.675684 AGAGCCAAACAAAAGGAAAGAAA 57.324 34.783 0.00 0.00 0.00 2.52
3145 4975 6.239217 AGAGCCAAACAAAAGGAAAGAAAT 57.761 33.333 0.00 0.00 0.00 2.17
3146 4976 7.360113 AGAGCCAAACAAAAGGAAAGAAATA 57.640 32.000 0.00 0.00 0.00 1.40
3147 4977 7.791029 AGAGCCAAACAAAAGGAAAGAAATAA 58.209 30.769 0.00 0.00 0.00 1.40
3148 4978 8.264347 AGAGCCAAACAAAAGGAAAGAAATAAA 58.736 29.630 0.00 0.00 0.00 1.40
3149 4979 8.800370 AGCCAAACAAAAGGAAAGAAATAAAA 57.200 26.923 0.00 0.00 0.00 1.52
3150 4980 9.407380 AGCCAAACAAAAGGAAAGAAATAAAAT 57.593 25.926 0.00 0.00 0.00 1.82
3151 4981 9.449550 GCCAAACAAAAGGAAAGAAATAAAATG 57.550 29.630 0.00 0.00 0.00 2.32
3152 4982 9.949174 CCAAACAAAAGGAAAGAAATAAAATGG 57.051 29.630 0.00 0.00 0.00 3.16
3153 4983 9.949174 CAAACAAAAGGAAAGAAATAAAATGGG 57.051 29.630 0.00 0.00 0.00 4.00
3154 4984 9.913310 AAACAAAAGGAAAGAAATAAAATGGGA 57.087 25.926 0.00 0.00 0.00 4.37
3155 4985 9.913310 AACAAAAGGAAAGAAATAAAATGGGAA 57.087 25.926 0.00 0.00 0.00 3.97
3156 4986 9.913310 ACAAAAGGAAAGAAATAAAATGGGAAA 57.087 25.926 0.00 0.00 0.00 3.13
3158 4988 8.601845 AAAGGAAAGAAATAAAATGGGAAACG 57.398 30.769 0.00 0.00 0.00 3.60
3159 4989 7.297936 AGGAAAGAAATAAAATGGGAAACGT 57.702 32.000 0.00 0.00 0.00 3.99
3160 4990 7.732025 AGGAAAGAAATAAAATGGGAAACGTT 58.268 30.769 0.00 0.00 0.00 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 2.304180 CCCTTCGCCTCCAAGATCATAT 59.696 50.000 0.00 0.00 0.00 1.78
52 54 1.281925 AATCACCCATCCCTTCGCCT 61.282 55.000 0.00 0.00 0.00 5.52
110 112 3.626924 GTCTGCACCCTGGTCCGT 61.627 66.667 0.00 0.00 0.00 4.69
136 138 2.666272 TTGCATTGGTTACTCCCACA 57.334 45.000 0.00 0.00 33.14 4.17
171 173 8.956426 GTGATAAATAACAAAATCACCTCCTGA 58.044 33.333 3.48 0.00 41.42 3.86
197 199 4.566360 ACAAAAAGCGAAACAGTTTCATGG 59.434 37.500 23.02 10.17 39.63 3.66
213 215 7.608308 TTGAGGAAAAATCACCAACAAAAAG 57.392 32.000 0.00 0.00 0.00 2.27
279 283 8.859090 TGACTAATTTCAGTTTGGATGAACAAT 58.141 29.630 0.00 0.00 36.44 2.71
348 353 2.446666 TGCCCTCCCATGTTGCTATTAT 59.553 45.455 0.00 0.00 0.00 1.28
351 356 0.184451 CTGCCCTCCCATGTTGCTAT 59.816 55.000 0.00 0.00 0.00 2.97
635 648 3.066291 ACTGCCCAATACATGAAACGA 57.934 42.857 0.00 0.00 0.00 3.85
704 717 1.526917 GGCACACCAAGCAGTCAGT 60.527 57.895 0.00 0.00 35.26 3.41
802 816 6.934048 TTTTATCGACATATGCATGGACAA 57.066 33.333 10.16 0.00 36.39 3.18
949 991 3.443037 CTTCTCTGCCTACACAATCTCG 58.557 50.000 0.00 0.00 0.00 4.04
1275 2667 6.998338 TCACCAAAATTTTCAAACATTGTCG 58.002 32.000 0.00 0.00 0.00 4.35
1303 2695 4.932799 TCATACAACCCACGTTCATACAAG 59.067 41.667 0.00 0.00 0.00 3.16
1609 3026 5.565592 TCATGCAATTTCAGGTGTATCAC 57.434 39.130 0.00 0.00 0.00 3.06
1658 3075 7.795534 ATATCTCTTGCATCTCTAGTCCATT 57.204 36.000 0.00 0.00 0.00 3.16
1706 3127 1.303309 CGTTCCATGATCCTTCTGGC 58.697 55.000 0.00 0.00 0.00 4.85
1964 3386 2.823984 CTTGCAAAATGGTGTGCTCAA 58.176 42.857 0.00 0.00 41.48 3.02
1979 3402 0.804364 GAACACATCGGATGCTTGCA 59.196 50.000 17.61 0.00 0.00 4.08
1985 3408 1.145759 CGTCGGGAACACATCGGATG 61.146 60.000 16.20 16.20 0.00 3.51
2033 3463 2.092882 GTCGCGGCTAGTTGTGACC 61.093 63.158 1.90 0.00 39.17 4.02
2034 3464 0.942410 TTGTCGCGGCTAGTTGTGAC 60.942 55.000 13.81 17.71 43.95 3.67
2035 3465 0.249531 TTTGTCGCGGCTAGTTGTGA 60.250 50.000 13.81 0.00 0.00 3.58
2036 3466 0.163788 CTTTGTCGCGGCTAGTTGTG 59.836 55.000 13.81 0.00 0.00 3.33
2037 3467 1.566018 GCTTTGTCGCGGCTAGTTGT 61.566 55.000 13.81 0.00 0.00 3.32
2038 3468 1.132640 GCTTTGTCGCGGCTAGTTG 59.867 57.895 13.81 0.00 0.00 3.16
2039 3469 1.004918 AGCTTTGTCGCGGCTAGTT 60.005 52.632 13.81 4.47 34.31 2.24
2040 3470 1.446272 GAGCTTTGTCGCGGCTAGT 60.446 57.895 13.81 0.51 36.37 2.57
2171 3612 1.412079 AACCCACATTTTGAGCAGCA 58.588 45.000 0.00 0.00 0.00 4.41
2299 3881 4.049186 GCTCGTTTCAGACTGTTTCTACA 58.951 43.478 1.59 0.00 31.12 2.74
2300 3882 3.429207 GGCTCGTTTCAGACTGTTTCTAC 59.571 47.826 1.59 0.00 31.12 2.59
2301 3883 3.650139 GGCTCGTTTCAGACTGTTTCTA 58.350 45.455 1.59 0.00 31.12 2.10
2302 3884 2.484889 GGCTCGTTTCAGACTGTTTCT 58.515 47.619 1.59 0.00 33.33 2.52
2303 3885 1.192534 CGGCTCGTTTCAGACTGTTTC 59.807 52.381 1.59 0.00 0.00 2.78
2304 3886 1.202486 TCGGCTCGTTTCAGACTGTTT 60.202 47.619 1.59 0.00 0.00 2.83
2305 3887 0.387929 TCGGCTCGTTTCAGACTGTT 59.612 50.000 1.59 0.00 0.00 3.16
2308 3890 0.894184 TCCTCGGCTCGTTTCAGACT 60.894 55.000 0.00 0.00 0.00 3.24
2309 3891 0.038526 TTCCTCGGCTCGTTTCAGAC 60.039 55.000 0.00 0.00 0.00 3.51
2314 3896 3.194968 TCTTCTTATTCCTCGGCTCGTTT 59.805 43.478 0.00 0.00 0.00 3.60
2322 3904 2.579207 TGGCGTCTTCTTATTCCTCG 57.421 50.000 0.00 0.00 0.00 4.63
2412 4002 6.513180 TCTATTTATACCGCAGAAGAACAGG 58.487 40.000 0.00 0.00 0.00 4.00
2459 4049 3.742369 GGTTTACGATCTGACCGTTTTGA 59.258 43.478 0.77 0.00 40.95 2.69
2524 4132 2.029518 CATGCGCGGGCTCTCATA 59.970 61.111 25.62 4.00 40.82 2.15
2539 4181 3.056393 CACACACTGATGAAAATGGGCAT 60.056 43.478 0.00 0.00 0.00 4.40
2547 4189 2.407090 CGAGCTCACACACTGATGAAA 58.593 47.619 15.40 0.00 0.00 2.69
2577 4396 7.072328 TGAATCCATTTACCCATCATGTCTCTA 59.928 37.037 0.00 0.00 0.00 2.43
2603 4422 2.973899 CAGGCTGGCTAGACGTGT 59.026 61.111 6.61 0.00 36.89 4.49
2687 4517 2.537625 GTCATGTATTCGAGCTCACAGC 59.462 50.000 15.40 0.00 42.84 4.40
2688 4518 3.774066 TGTCATGTATTCGAGCTCACAG 58.226 45.455 15.40 5.07 0.00 3.66
2689 4519 3.866883 TGTCATGTATTCGAGCTCACA 57.133 42.857 15.40 10.81 0.00 3.58
2690 4520 3.060003 GCATGTCATGTATTCGAGCTCAC 60.060 47.826 15.40 4.66 0.00 3.51
2691 4521 3.126073 GCATGTCATGTATTCGAGCTCA 58.874 45.455 15.40 0.00 0.00 4.26
2692 4522 2.478134 GGCATGTCATGTATTCGAGCTC 59.522 50.000 14.26 2.73 0.00 4.09
2693 4523 2.158914 TGGCATGTCATGTATTCGAGCT 60.159 45.455 14.26 0.00 0.00 4.09
2694 4524 2.212652 TGGCATGTCATGTATTCGAGC 58.787 47.619 14.26 0.00 0.00 5.03
2695 4525 2.222678 GCTGGCATGTCATGTATTCGAG 59.777 50.000 14.26 5.47 0.00 4.04
2696 4526 2.212652 GCTGGCATGTCATGTATTCGA 58.787 47.619 14.26 0.00 0.00 3.71
2697 4527 1.265095 GGCTGGCATGTCATGTATTCG 59.735 52.381 14.26 0.00 0.00 3.34
2698 4528 2.292569 CAGGCTGGCATGTCATGTATTC 59.707 50.000 14.26 3.34 0.00 1.75
2699 4529 2.304092 CAGGCTGGCATGTCATGTATT 58.696 47.619 14.26 0.00 0.00 1.89
2700 4530 1.977056 CAGGCTGGCATGTCATGTAT 58.023 50.000 14.26 0.00 0.00 2.29
2701 4531 0.749091 GCAGGCTGGCATGTCATGTA 60.749 55.000 17.64 3.60 0.00 2.29
2702 4532 2.050350 GCAGGCTGGCATGTCATGT 61.050 57.895 17.64 0.00 0.00 3.21
2703 4533 2.782222 GGCAGGCTGGCATGTCATG 61.782 63.158 33.28 8.56 43.14 3.07
2704 4534 2.441532 GGCAGGCTGGCATGTCAT 60.442 61.111 33.28 0.00 43.14 3.06
2721 4551 2.202544 GTCGTCCAGAGCTCGCTG 60.203 66.667 8.37 1.60 35.66 5.18
2722 4552 2.049185 ATGTCGTCCAGAGCTCGCT 61.049 57.895 8.37 0.00 0.00 4.93
2723 4553 1.875813 CATGTCGTCCAGAGCTCGC 60.876 63.158 8.37 0.00 0.00 5.03
2724 4554 1.226802 CCATGTCGTCCAGAGCTCG 60.227 63.158 8.37 3.24 0.00 5.03
2725 4555 1.142748 CCCATGTCGTCCAGAGCTC 59.857 63.158 5.27 5.27 0.00 4.09
2726 4556 0.689080 ATCCCATGTCGTCCAGAGCT 60.689 55.000 0.00 0.00 0.00 4.09
2727 4557 0.531532 CATCCCATGTCGTCCAGAGC 60.532 60.000 0.00 0.00 0.00 4.09
2728 4558 0.531532 GCATCCCATGTCGTCCAGAG 60.532 60.000 0.00 0.00 0.00 3.35
2729 4559 0.977627 AGCATCCCATGTCGTCCAGA 60.978 55.000 0.00 0.00 0.00 3.86
2730 4560 0.752658 TAGCATCCCATGTCGTCCAG 59.247 55.000 0.00 0.00 0.00 3.86
2731 4561 0.464036 GTAGCATCCCATGTCGTCCA 59.536 55.000 0.00 0.00 0.00 4.02
2732 4562 0.753262 AGTAGCATCCCATGTCGTCC 59.247 55.000 0.00 0.00 0.00 4.79
2733 4563 1.137086 ACAGTAGCATCCCATGTCGTC 59.863 52.381 0.00 0.00 0.00 4.20
2734 4564 1.195115 ACAGTAGCATCCCATGTCGT 58.805 50.000 0.00 0.00 0.00 4.34
2735 4565 2.623416 TCTACAGTAGCATCCCATGTCG 59.377 50.000 2.26 0.00 0.00 4.35
2736 4566 4.672587 TTCTACAGTAGCATCCCATGTC 57.327 45.455 2.26 0.00 0.00 3.06
2737 4567 5.435686 TTTTCTACAGTAGCATCCCATGT 57.564 39.130 2.26 0.00 0.00 3.21
2738 4568 6.949352 ATTTTTCTACAGTAGCATCCCATG 57.051 37.500 2.26 0.00 0.00 3.66
2739 4569 7.573710 TGTATTTTTCTACAGTAGCATCCCAT 58.426 34.615 2.26 0.00 0.00 4.00
2740 4570 6.953101 TGTATTTTTCTACAGTAGCATCCCA 58.047 36.000 2.26 0.00 0.00 4.37
2741 4571 9.555727 TTATGTATTTTTCTACAGTAGCATCCC 57.444 33.333 2.26 0.00 35.21 3.85
2749 4579 9.880157 ACACCGTATTATGTATTTTTCTACAGT 57.120 29.630 0.00 0.00 35.21 3.55
2751 4581 9.100554 CCACACCGTATTATGTATTTTTCTACA 57.899 33.333 0.00 0.00 36.14 2.74
2752 4582 8.553696 CCCACACCGTATTATGTATTTTTCTAC 58.446 37.037 0.00 0.00 0.00 2.59
2753 4583 7.716123 CCCCACACCGTATTATGTATTTTTCTA 59.284 37.037 0.00 0.00 0.00 2.10
2754 4584 6.544564 CCCCACACCGTATTATGTATTTTTCT 59.455 38.462 0.00 0.00 0.00 2.52
2755 4585 6.238814 CCCCCACACCGTATTATGTATTTTTC 60.239 42.308 0.00 0.00 0.00 2.29
2756 4586 5.595133 CCCCCACACCGTATTATGTATTTTT 59.405 40.000 0.00 0.00 0.00 1.94
2757 4587 5.134661 CCCCCACACCGTATTATGTATTTT 58.865 41.667 0.00 0.00 0.00 1.82
2758 4588 4.721132 CCCCCACACCGTATTATGTATTT 58.279 43.478 0.00 0.00 0.00 1.40
2759 4589 3.497227 GCCCCCACACCGTATTATGTATT 60.497 47.826 0.00 0.00 0.00 1.89
2760 4590 2.039348 GCCCCCACACCGTATTATGTAT 59.961 50.000 0.00 0.00 0.00 2.29
2761 4591 1.417145 GCCCCCACACCGTATTATGTA 59.583 52.381 0.00 0.00 0.00 2.29
2762 4592 0.181824 GCCCCCACACCGTATTATGT 59.818 55.000 0.00 0.00 0.00 2.29
2763 4593 0.882927 CGCCCCCACACCGTATTATG 60.883 60.000 0.00 0.00 0.00 1.90
2764 4594 1.339644 ACGCCCCCACACCGTATTAT 61.340 55.000 0.00 0.00 32.86 1.28
2765 4595 0.685785 TACGCCCCCACACCGTATTA 60.686 55.000 0.00 0.00 36.51 0.98
2766 4596 1.339644 ATACGCCCCCACACCGTATT 61.340 55.000 0.00 0.00 43.27 1.89
2767 4597 0.469705 TATACGCCCCCACACCGTAT 60.470 55.000 9.43 9.43 46.25 3.06
2768 4598 1.076412 TATACGCCCCCACACCGTA 60.076 57.895 0.00 0.00 41.04 4.02
2769 4599 2.364056 TATACGCCCCCACACCGT 60.364 61.111 0.00 0.00 38.84 4.83
2770 4600 2.420043 CTATACGCCCCCACACCG 59.580 66.667 0.00 0.00 0.00 4.94
2771 4601 2.110420 GCTATACGCCCCCACACC 59.890 66.667 0.00 0.00 0.00 4.16
2772 4602 1.227556 CAGCTATACGCCCCCACAC 60.228 63.158 0.00 0.00 40.39 3.82
2773 4603 1.687840 ACAGCTATACGCCCCCACA 60.688 57.895 0.00 0.00 40.39 4.17
2774 4604 1.227556 CACAGCTATACGCCCCCAC 60.228 63.158 0.00 0.00 40.39 4.61
2775 4605 1.382009 TCACAGCTATACGCCCCCA 60.382 57.895 0.00 0.00 40.39 4.96
2776 4606 1.367840 CTCACAGCTATACGCCCCC 59.632 63.158 0.00 0.00 40.39 5.40
2806 4636 0.887247 TGCAGCGTGGCATTAATGTT 59.113 45.000 16.61 0.00 39.25 2.71
2898 4728 4.479158 TGTGGCTTAAAGGAGGAATTTGT 58.521 39.130 0.00 0.00 0.00 2.83
2899 4729 5.467035 TTGTGGCTTAAAGGAGGAATTTG 57.533 39.130 0.00 0.00 0.00 2.32
2900 4730 6.493189 TTTTGTGGCTTAAAGGAGGAATTT 57.507 33.333 0.00 0.00 0.00 1.82
2901 4731 6.126911 TGTTTTTGTGGCTTAAAGGAGGAATT 60.127 34.615 0.00 0.00 0.00 2.17
2902 4732 5.365314 TGTTTTTGTGGCTTAAAGGAGGAAT 59.635 36.000 0.00 0.00 0.00 3.01
2903 4733 4.712337 TGTTTTTGTGGCTTAAAGGAGGAA 59.288 37.500 0.00 0.00 0.00 3.36
2904 4734 4.282496 TGTTTTTGTGGCTTAAAGGAGGA 58.718 39.130 0.00 0.00 0.00 3.71
2905 4735 4.664150 TGTTTTTGTGGCTTAAAGGAGG 57.336 40.909 0.00 0.00 0.00 4.30
2906 4736 4.990426 CCATGTTTTTGTGGCTTAAAGGAG 59.010 41.667 0.00 0.00 0.00 3.69
2907 4737 4.954875 CCATGTTTTTGTGGCTTAAAGGA 58.045 39.130 0.00 0.00 0.00 3.36
2916 4746 5.453648 CATGAAATTGCCATGTTTTTGTGG 58.546 37.500 11.07 0.00 37.28 4.17
2925 4755 6.866770 GGAAGATATGACATGAAATTGCCATG 59.133 38.462 15.54 15.54 45.03 3.66
2926 4756 6.014840 GGGAAGATATGACATGAAATTGCCAT 60.015 38.462 0.00 0.00 0.00 4.40
2927 4757 5.302568 GGGAAGATATGACATGAAATTGCCA 59.697 40.000 0.00 0.00 0.00 4.92
2928 4758 5.537674 AGGGAAGATATGACATGAAATTGCC 59.462 40.000 0.00 3.03 0.00 4.52
2929 4759 6.645790 AGGGAAGATATGACATGAAATTGC 57.354 37.500 0.00 0.00 0.00 3.56
2930 4760 8.004087 ACAAGGGAAGATATGACATGAAATTG 57.996 34.615 0.00 0.00 0.00 2.32
2931 4761 9.347240 CTACAAGGGAAGATATGACATGAAATT 57.653 33.333 0.00 0.00 0.00 1.82
2932 4762 8.497745 ACTACAAGGGAAGATATGACATGAAAT 58.502 33.333 0.00 0.00 0.00 2.17
2933 4763 7.770433 CACTACAAGGGAAGATATGACATGAAA 59.230 37.037 0.00 0.00 0.00 2.69
2934 4764 7.092891 ACACTACAAGGGAAGATATGACATGAA 60.093 37.037 0.00 0.00 0.00 2.57
2935 4765 6.384015 ACACTACAAGGGAAGATATGACATGA 59.616 38.462 0.00 0.00 0.00 3.07
2936 4766 6.586344 ACACTACAAGGGAAGATATGACATG 58.414 40.000 0.00 0.00 0.00 3.21
2937 4767 6.814954 ACACTACAAGGGAAGATATGACAT 57.185 37.500 0.00 0.00 0.00 3.06
2938 4768 6.666113 TGTACACTACAAGGGAAGATATGACA 59.334 38.462 0.00 0.00 35.38 3.58
2939 4769 6.979238 GTGTACACTACAAGGGAAGATATGAC 59.021 42.308 18.92 0.00 40.93 3.06
2940 4770 6.666113 TGTGTACACTACAAGGGAAGATATGA 59.334 38.462 25.60 0.00 40.93 2.15
2941 4771 6.873997 TGTGTACACTACAAGGGAAGATATG 58.126 40.000 25.60 0.00 40.93 1.78
2942 4772 7.490657 TTGTGTACACTACAAGGGAAGATAT 57.509 36.000 25.60 0.00 40.93 1.63
2943 4773 6.921486 TTGTGTACACTACAAGGGAAGATA 57.079 37.500 25.60 0.00 40.93 1.98
2944 4774 5.818678 TTGTGTACACTACAAGGGAAGAT 57.181 39.130 25.60 0.00 40.93 2.40
2945 4775 5.818678 ATTGTGTACACTACAAGGGAAGA 57.181 39.130 25.60 0.00 40.92 2.87
2946 4776 7.277981 GTGATATTGTGTACACTACAAGGGAAG 59.722 40.741 25.60 0.00 40.92 3.46
2947 4777 7.101054 GTGATATTGTGTACACTACAAGGGAA 58.899 38.462 25.60 10.19 40.92 3.97
2948 4778 6.626402 CGTGATATTGTGTACACTACAAGGGA 60.626 42.308 25.60 0.81 40.92 4.20
2949 4779 5.518847 CGTGATATTGTGTACACTACAAGGG 59.481 44.000 25.60 6.60 40.92 3.95
2950 4780 5.005394 GCGTGATATTGTGTACACTACAAGG 59.995 44.000 25.60 12.91 40.92 3.61
2951 4781 5.575218 TGCGTGATATTGTGTACACTACAAG 59.425 40.000 25.60 18.44 40.92 3.16
2952 4782 5.346551 GTGCGTGATATTGTGTACACTACAA 59.653 40.000 25.60 13.07 40.93 2.41
2953 4783 4.860352 GTGCGTGATATTGTGTACACTACA 59.140 41.667 25.60 9.31 36.08 2.74
2954 4784 5.100259 AGTGCGTGATATTGTGTACACTAC 58.900 41.667 25.60 13.50 35.49 2.73
2955 4785 5.319140 AGTGCGTGATATTGTGTACACTA 57.681 39.130 25.60 19.31 35.49 2.74
2956 4786 4.188247 AGTGCGTGATATTGTGTACACT 57.812 40.909 25.60 10.10 32.54 3.55
2957 4787 4.625742 AGAAGTGCGTGATATTGTGTACAC 59.374 41.667 19.36 19.36 0.00 2.90
2958 4788 4.816392 AGAAGTGCGTGATATTGTGTACA 58.184 39.130 0.00 0.00 0.00 2.90
2959 4789 5.779806 AAGAAGTGCGTGATATTGTGTAC 57.220 39.130 0.00 0.00 0.00 2.90
2960 4790 5.061684 CGAAAGAAGTGCGTGATATTGTGTA 59.938 40.000 0.00 0.00 0.00 2.90
2961 4791 4.143115 CGAAAGAAGTGCGTGATATTGTGT 60.143 41.667 0.00 0.00 0.00 3.72
2962 4792 4.143115 ACGAAAGAAGTGCGTGATATTGTG 60.143 41.667 0.00 0.00 36.83 3.33
2963 4793 3.994392 ACGAAAGAAGTGCGTGATATTGT 59.006 39.130 0.00 0.00 36.83 2.71
2964 4794 4.584029 ACGAAAGAAGTGCGTGATATTG 57.416 40.909 0.00 0.00 36.83 1.90
2965 4795 5.063060 GGTAACGAAAGAAGTGCGTGATATT 59.937 40.000 0.00 0.00 38.39 1.28
2966 4796 4.565564 GGTAACGAAAGAAGTGCGTGATAT 59.434 41.667 0.00 0.00 38.39 1.63
2967 4797 3.922240 GGTAACGAAAGAAGTGCGTGATA 59.078 43.478 0.00 0.00 38.39 2.15
2968 4798 2.735134 GGTAACGAAAGAAGTGCGTGAT 59.265 45.455 0.00 0.00 38.39 3.06
2969 4799 2.129607 GGTAACGAAAGAAGTGCGTGA 58.870 47.619 0.00 0.00 38.39 4.35
2970 4800 1.862201 TGGTAACGAAAGAAGTGCGTG 59.138 47.619 0.00 0.00 38.39 5.34
2971 4801 1.862827 GTGGTAACGAAAGAAGTGCGT 59.137 47.619 0.00 0.00 40.35 5.24
2972 4802 1.862201 TGTGGTAACGAAAGAAGTGCG 59.138 47.619 0.00 0.00 42.51 5.34
2973 4803 2.610374 TGTGTGGTAACGAAAGAAGTGC 59.390 45.455 0.00 0.00 42.51 4.40
2974 4804 3.001939 GGTGTGTGGTAACGAAAGAAGTG 59.998 47.826 0.00 0.00 42.51 3.16
2975 4805 3.200483 GGTGTGTGGTAACGAAAGAAGT 58.800 45.455 0.00 0.00 42.51 3.01
2976 4806 3.199677 TGGTGTGTGGTAACGAAAGAAG 58.800 45.455 0.00 0.00 42.51 2.85
2977 4807 3.263489 TGGTGTGTGGTAACGAAAGAA 57.737 42.857 0.00 0.00 42.51 2.52
2978 4808 2.937799 GTTGGTGTGTGGTAACGAAAGA 59.062 45.455 0.00 0.00 42.51 2.52
2979 4809 2.285950 CGTTGGTGTGTGGTAACGAAAG 60.286 50.000 0.00 0.00 46.18 2.62
2980 4810 1.664659 CGTTGGTGTGTGGTAACGAAA 59.335 47.619 0.00 0.00 46.18 3.46
2981 4811 1.288350 CGTTGGTGTGTGGTAACGAA 58.712 50.000 0.00 0.00 46.18 3.85
2982 4812 0.175302 ACGTTGGTGTGTGGTAACGA 59.825 50.000 14.20 0.00 46.18 3.85
2984 4814 2.284952 GTGTACGTTGGTGTGTGGTAAC 59.715 50.000 0.00 0.00 0.00 2.50
2985 4815 2.093816 TGTGTACGTTGGTGTGTGGTAA 60.094 45.455 0.00 0.00 0.00 2.85
2986 4816 1.479730 TGTGTACGTTGGTGTGTGGTA 59.520 47.619 0.00 0.00 0.00 3.25
2987 4817 0.249676 TGTGTACGTTGGTGTGTGGT 59.750 50.000 0.00 0.00 0.00 4.16
2988 4818 1.529438 GATGTGTACGTTGGTGTGTGG 59.471 52.381 0.00 0.00 0.00 4.17
2989 4819 2.205911 TGATGTGTACGTTGGTGTGTG 58.794 47.619 0.00 0.00 0.00 3.82
2990 4820 2.605837 TGATGTGTACGTTGGTGTGT 57.394 45.000 0.00 0.00 0.00 3.72
2991 4821 3.422993 CGATTGATGTGTACGTTGGTGTG 60.423 47.826 0.00 0.00 0.00 3.82
2992 4822 2.734606 CGATTGATGTGTACGTTGGTGT 59.265 45.455 0.00 0.00 0.00 4.16
2993 4823 2.093625 CCGATTGATGTGTACGTTGGTG 59.906 50.000 0.00 0.00 0.00 4.17
2994 4824 2.289195 ACCGATTGATGTGTACGTTGGT 60.289 45.455 0.00 0.00 0.00 3.67
2995 4825 2.343101 ACCGATTGATGTGTACGTTGG 58.657 47.619 0.00 0.00 0.00 3.77
2996 4826 5.518529 TTTACCGATTGATGTGTACGTTG 57.481 39.130 0.00 0.00 0.00 4.10
2997 4827 7.037438 ACTATTTACCGATTGATGTGTACGTT 58.963 34.615 0.00 0.00 0.00 3.99
2998 4828 6.567050 ACTATTTACCGATTGATGTGTACGT 58.433 36.000 0.00 0.00 0.00 3.57
2999 4829 8.564648 TTACTATTTACCGATTGATGTGTACG 57.435 34.615 0.00 0.00 0.00 3.67
3001 4831 9.872721 TGTTTACTATTTACCGATTGATGTGTA 57.127 29.630 0.00 0.00 0.00 2.90
3002 4832 8.780846 TGTTTACTATTTACCGATTGATGTGT 57.219 30.769 0.00 0.00 0.00 3.72
3003 4833 9.093970 TCTGTTTACTATTTACCGATTGATGTG 57.906 33.333 0.00 0.00 0.00 3.21
3004 4834 9.661563 TTCTGTTTACTATTTACCGATTGATGT 57.338 29.630 0.00 0.00 0.00 3.06
3024 4854 9.846248 GCTTACAATGATTTGTTATCTTCTGTT 57.154 29.630 0.00 0.00 43.57 3.16
3025 4855 9.013229 TGCTTACAATGATTTGTTATCTTCTGT 57.987 29.630 0.00 0.00 43.57 3.41
3026 4856 9.499585 CTGCTTACAATGATTTGTTATCTTCTG 57.500 33.333 0.00 0.00 43.57 3.02
3027 4857 9.236006 ACTGCTTACAATGATTTGTTATCTTCT 57.764 29.630 0.00 0.00 43.57 2.85
3030 4860 9.448438 TGTACTGCTTACAATGATTTGTTATCT 57.552 29.630 0.00 0.00 43.57 1.98
3031 4861 9.708222 CTGTACTGCTTACAATGATTTGTTATC 57.292 33.333 0.00 0.00 43.57 1.75
3032 4862 8.677300 CCTGTACTGCTTACAATGATTTGTTAT 58.323 33.333 0.00 0.00 43.57 1.89
3033 4863 7.361713 GCCTGTACTGCTTACAATGATTTGTTA 60.362 37.037 0.00 0.00 43.57 2.41
3034 4864 6.570378 GCCTGTACTGCTTACAATGATTTGTT 60.570 38.462 0.00 0.00 43.57 2.83
3036 4866 5.106197 TGCCTGTACTGCTTACAATGATTTG 60.106 40.000 8.96 0.00 40.33 2.32
3037 4867 5.009631 TGCCTGTACTGCTTACAATGATTT 58.990 37.500 8.96 0.00 40.33 2.17
3038 4868 4.588899 TGCCTGTACTGCTTACAATGATT 58.411 39.130 8.96 0.00 40.33 2.57
3039 4869 4.220693 TGCCTGTACTGCTTACAATGAT 57.779 40.909 8.96 0.00 40.33 2.45
3040 4870 3.694043 TGCCTGTACTGCTTACAATGA 57.306 42.857 8.96 0.00 40.33 2.57
3041 4871 4.002982 TCTTGCCTGTACTGCTTACAATG 58.997 43.478 8.96 0.00 40.33 2.82
3042 4872 4.020218 TCTCTTGCCTGTACTGCTTACAAT 60.020 41.667 8.96 0.00 40.33 2.71
3043 4873 3.323691 TCTCTTGCCTGTACTGCTTACAA 59.676 43.478 8.96 3.60 40.33 2.41
3044 4874 2.897326 TCTCTTGCCTGTACTGCTTACA 59.103 45.455 8.96 0.00 38.45 2.41
3045 4875 3.594603 TCTCTTGCCTGTACTGCTTAC 57.405 47.619 8.96 0.00 0.00 2.34
3046 4876 4.222810 TGATTCTCTTGCCTGTACTGCTTA 59.777 41.667 8.96 0.00 0.00 3.09
3047 4877 3.008375 TGATTCTCTTGCCTGTACTGCTT 59.992 43.478 8.96 0.00 0.00 3.91
3048 4878 2.568956 TGATTCTCTTGCCTGTACTGCT 59.431 45.455 8.96 0.00 0.00 4.24
3049 4879 2.977914 TGATTCTCTTGCCTGTACTGC 58.022 47.619 0.00 0.00 0.00 4.40
3050 4880 3.373439 GCTTGATTCTCTTGCCTGTACTG 59.627 47.826 0.00 0.00 0.00 2.74
3051 4881 3.262915 AGCTTGATTCTCTTGCCTGTACT 59.737 43.478 0.00 0.00 0.00 2.73
3052 4882 3.604582 AGCTTGATTCTCTTGCCTGTAC 58.395 45.455 0.00 0.00 0.00 2.90
3053 4883 3.988976 AGCTTGATTCTCTTGCCTGTA 57.011 42.857 0.00 0.00 0.00 2.74
3054 4884 2.875094 AGCTTGATTCTCTTGCCTGT 57.125 45.000 0.00 0.00 0.00 4.00
3055 4885 4.449131 TGATAGCTTGATTCTCTTGCCTG 58.551 43.478 0.00 0.00 0.00 4.85
3056 4886 4.767578 TGATAGCTTGATTCTCTTGCCT 57.232 40.909 0.00 0.00 0.00 4.75
3057 4887 4.261114 GCTTGATAGCTTGATTCTCTTGCC 60.261 45.833 0.00 0.00 44.27 4.52
3058 4888 4.846509 GCTTGATAGCTTGATTCTCTTGC 58.153 43.478 0.00 0.00 44.27 4.01
3094 4924 6.286240 ACTGTTTGAAGCCTTTCTCTTTTT 57.714 33.333 0.00 0.00 34.31 1.94
3095 4925 5.921962 ACTGTTTGAAGCCTTTCTCTTTT 57.078 34.783 0.00 0.00 34.31 2.27
3096 4926 6.357367 TCTACTGTTTGAAGCCTTTCTCTTT 58.643 36.000 0.00 0.00 34.31 2.52
3097 4927 5.930135 TCTACTGTTTGAAGCCTTTCTCTT 58.070 37.500 0.00 0.00 34.31 2.85
3098 4928 5.552870 TCTACTGTTTGAAGCCTTTCTCT 57.447 39.130 0.00 0.00 34.31 3.10
3099 4929 7.324178 TCTATCTACTGTTTGAAGCCTTTCTC 58.676 38.462 0.00 0.00 34.31 2.87
3100 4930 7.246171 TCTATCTACTGTTTGAAGCCTTTCT 57.754 36.000 0.00 0.00 34.31 2.52
3101 4931 6.036626 GCTCTATCTACTGTTTGAAGCCTTTC 59.963 42.308 0.00 0.00 0.00 2.62
3102 4932 5.877564 GCTCTATCTACTGTTTGAAGCCTTT 59.122 40.000 0.00 0.00 0.00 3.11
3103 4933 5.423886 GCTCTATCTACTGTTTGAAGCCTT 58.576 41.667 0.00 0.00 0.00 4.35
3104 4934 4.141824 GGCTCTATCTACTGTTTGAAGCCT 60.142 45.833 13.01 0.00 35.00 4.58
3105 4935 4.123506 GGCTCTATCTACTGTTTGAAGCC 58.876 47.826 0.00 0.00 0.00 4.35
3106 4936 4.759782 TGGCTCTATCTACTGTTTGAAGC 58.240 43.478 0.00 0.00 0.00 3.86
3107 4937 6.650807 TGTTTGGCTCTATCTACTGTTTGAAG 59.349 38.462 0.00 0.00 0.00 3.02
3108 4938 6.530120 TGTTTGGCTCTATCTACTGTTTGAA 58.470 36.000 0.00 0.00 0.00 2.69
3109 4939 6.109156 TGTTTGGCTCTATCTACTGTTTGA 57.891 37.500 0.00 0.00 0.00 2.69
3110 4940 6.801539 TTGTTTGGCTCTATCTACTGTTTG 57.198 37.500 0.00 0.00 0.00 2.93
3111 4941 7.040409 CCTTTTGTTTGGCTCTATCTACTGTTT 60.040 37.037 0.00 0.00 0.00 2.83
3112 4942 6.431234 CCTTTTGTTTGGCTCTATCTACTGTT 59.569 38.462 0.00 0.00 0.00 3.16
3113 4943 5.940470 CCTTTTGTTTGGCTCTATCTACTGT 59.060 40.000 0.00 0.00 0.00 3.55
3114 4944 6.173339 TCCTTTTGTTTGGCTCTATCTACTG 58.827 40.000 0.00 0.00 0.00 2.74
3115 4945 6.374417 TCCTTTTGTTTGGCTCTATCTACT 57.626 37.500 0.00 0.00 0.00 2.57
3116 4946 7.390718 TCTTTCCTTTTGTTTGGCTCTATCTAC 59.609 37.037 0.00 0.00 0.00 2.59
3117 4947 7.458397 TCTTTCCTTTTGTTTGGCTCTATCTA 58.542 34.615 0.00 0.00 0.00 1.98
3118 4948 6.306987 TCTTTCCTTTTGTTTGGCTCTATCT 58.693 36.000 0.00 0.00 0.00 1.98
3119 4949 6.575162 TCTTTCCTTTTGTTTGGCTCTATC 57.425 37.500 0.00 0.00 0.00 2.08
3120 4950 6.976934 TTCTTTCCTTTTGTTTGGCTCTAT 57.023 33.333 0.00 0.00 0.00 1.98
3121 4951 6.783708 TTTCTTTCCTTTTGTTTGGCTCTA 57.216 33.333 0.00 0.00 0.00 2.43
3122 4952 5.675684 TTTCTTTCCTTTTGTTTGGCTCT 57.324 34.783 0.00 0.00 0.00 4.09
3123 4953 8.432110 TTTATTTCTTTCCTTTTGTTTGGCTC 57.568 30.769 0.00 0.00 0.00 4.70
3124 4954 8.800370 TTTTATTTCTTTCCTTTTGTTTGGCT 57.200 26.923 0.00 0.00 0.00 4.75
3125 4955 9.449550 CATTTTATTTCTTTCCTTTTGTTTGGC 57.550 29.630 0.00 0.00 0.00 4.52
3126 4956 9.949174 CCATTTTATTTCTTTCCTTTTGTTTGG 57.051 29.630 0.00 0.00 0.00 3.28
3127 4957 9.949174 CCCATTTTATTTCTTTCCTTTTGTTTG 57.051 29.630 0.00 0.00 0.00 2.93
3128 4958 9.913310 TCCCATTTTATTTCTTTCCTTTTGTTT 57.087 25.926 0.00 0.00 0.00 2.83
3129 4959 9.913310 TTCCCATTTTATTTCTTTCCTTTTGTT 57.087 25.926 0.00 0.00 0.00 2.83
3130 4960 9.913310 TTTCCCATTTTATTTCTTTCCTTTTGT 57.087 25.926 0.00 0.00 0.00 2.83
3132 4962 9.051679 CGTTTCCCATTTTATTTCTTTCCTTTT 57.948 29.630 0.00 0.00 0.00 2.27
3133 4963 8.208224 ACGTTTCCCATTTTATTTCTTTCCTTT 58.792 29.630 0.00 0.00 0.00 3.11
3134 4964 7.732025 ACGTTTCCCATTTTATTTCTTTCCTT 58.268 30.769 0.00 0.00 0.00 3.36
3135 4965 7.297936 ACGTTTCCCATTTTATTTCTTTCCT 57.702 32.000 0.00 0.00 0.00 3.36
3136 4966 7.956420 AACGTTTCCCATTTTATTTCTTTCC 57.044 32.000 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.