Multiple sequence alignment - TraesCS2A01G235400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G235400 chr2A 100.000 4013 0 0 1 4013 293155023 293151011 0.000000e+00 7411.0
1 TraesCS2A01G235400 chr2D 97.613 3184 30 9 849 4013 257386582 257389738 0.000000e+00 5417.0
2 TraesCS2A01G235400 chr2D 91.392 395 33 1 140 533 257385754 257386148 1.270000e-149 540.0
3 TraesCS2A01G235400 chr2D 96.154 104 2 1 3692 3793 257389321 257389424 6.900000e-38 169.0
4 TraesCS2A01G235400 chr2B 97.343 2898 55 13 849 3730 285056510 285053619 0.000000e+00 4905.0
5 TraesCS2A01G235400 chr2B 97.059 102 3 0 3692 3793 285053753 285053652 5.330000e-39 172.0
6 TraesCS2A01G235400 chr2B 88.889 135 12 1 3692 3826 579813861 579813730 3.210000e-36 163.0
7 TraesCS2A01G235400 chr2B 90.476 42 3 1 3926 3966 798610852 798610893 2.000000e-03 54.7
8 TraesCS2A01G235400 chr5B 88.401 319 28 6 3377 3693 320645270 320645581 3.790000e-100 375.0
9 TraesCS2A01G235400 chr5B 87.407 135 14 1 3692 3826 320645487 320645618 6.950000e-33 152.0
10 TraesCS2A01G235400 chr4A 87.730 326 31 7 3370 3693 730196055 730195737 4.900000e-99 372.0
11 TraesCS2A01G235400 chr4A 86.280 328 33 9 3370 3693 673929033 673928714 2.970000e-91 346.0
12 TraesCS2A01G235400 chr4A 89.706 136 10 3 3692 3826 730195831 730195699 1.920000e-38 171.0
13 TraesCS2A01G235400 chr4D 86.890 328 32 8 3370 3693 343455907 343455587 1.370000e-94 357.0
14 TraesCS2A01G235400 chr4D 94.245 139 8 0 1 139 231000231 231000369 3.140000e-51 213.0
15 TraesCS2A01G235400 chr4B 86.890 328 32 7 3370 3693 574339059 574339379 1.370000e-94 357.0
16 TraesCS2A01G235400 chr4B 89.630 135 11 1 3692 3826 574339285 574339416 6.900000e-38 169.0
17 TraesCS2A01G235400 chr1D 86.585 328 33 8 3370 3693 484177679 484177999 6.380000e-93 351.0
18 TraesCS2A01G235400 chr5D 86.280 328 32 9 3370 3693 487570448 487570766 1.070000e-90 344.0
19 TraesCS2A01G235400 chr5D 93.617 141 9 0 1 141 310313667 310313807 1.130000e-50 211.0
20 TraesCS2A01G235400 chr3D 92.568 148 11 0 1 148 17955833 17955686 3.140000e-51 213.0
21 TraesCS2A01G235400 chr3D 93.617 141 9 0 1 141 99028899 99028759 1.130000e-50 211.0
22 TraesCS2A01G235400 chr3D 91.391 151 11 2 1 150 261761028 261760879 5.260000e-49 206.0
23 TraesCS2A01G235400 chr7A 93.617 141 9 0 1 141 139608807 139608667 1.130000e-50 211.0
24 TraesCS2A01G235400 chr7A 93.617 141 9 0 1 141 476830850 476830990 1.130000e-50 211.0
25 TraesCS2A01G235400 chr7A 93.617 141 9 0 1 141 544639168 544639308 1.130000e-50 211.0
26 TraesCS2A01G235400 chr6D 93.617 141 9 0 1 141 232033672 232033812 1.130000e-50 211.0
27 TraesCS2A01G235400 chr3A 88.889 135 12 1 3692 3826 406270332 406270463 3.210000e-36 163.0
28 TraesCS2A01G235400 chr1B 86.429 140 15 2 3692 3831 540788683 540788548 2.500000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G235400 chr2A 293151011 293155023 4012 True 7411.0 7411 100.000 1 4013 1 chr2A.!!$R1 4012
1 TraesCS2A01G235400 chr2D 257385754 257389738 3984 False 2042.0 5417 95.053 140 4013 3 chr2D.!!$F1 3873
2 TraesCS2A01G235400 chr2B 285053619 285056510 2891 True 2538.5 4905 97.201 849 3793 2 chr2B.!!$R2 2944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.030369 GTCGATGCACCCTACCGTAG 59.970 60.0 0.00 0.00 0.00 3.51 F
541 543 0.036010 CTTGACAATGAGGGCCTCGT 60.036 55.0 27.58 25.26 32.35 4.18 F
543 545 0.036388 TGACAATGAGGGCCTCGTTC 60.036 55.0 33.08 24.69 37.59 3.95 F
629 631 0.109086 CAGCATCTCTTCCGACGTGT 60.109 55.0 0.00 0.00 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1036 1359 0.461163 GAAAGAGAAGAGGGCGAGGC 60.461 60.000 0.0 0.0 0.0 4.70 R
2335 2673 2.629617 CCACAGCAAACTTCCCTTGAAT 59.370 45.455 0.0 0.0 0.0 2.57 R
2354 2692 3.814906 CACACCCACCACCACCCA 61.815 66.667 0.0 0.0 0.0 4.51 R
3088 3426 0.249657 CTAGCAGCAATCTCCCCGAC 60.250 60.000 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.303257 CCCCAACTCTTCTTCCGC 57.697 61.111 0.00 0.00 0.00 5.54
18 19 1.679898 CCCCAACTCTTCTTCCGCT 59.320 57.895 0.00 0.00 0.00 5.52
19 20 0.902531 CCCCAACTCTTCTTCCGCTA 59.097 55.000 0.00 0.00 0.00 4.26
20 21 1.405661 CCCCAACTCTTCTTCCGCTAC 60.406 57.143 0.00 0.00 0.00 3.58
21 22 1.275291 CCCAACTCTTCTTCCGCTACA 59.725 52.381 0.00 0.00 0.00 2.74
22 23 2.338500 CCAACTCTTCTTCCGCTACAC 58.662 52.381 0.00 0.00 0.00 2.90
23 24 1.986378 CAACTCTTCTTCCGCTACACG 59.014 52.381 0.00 0.00 43.15 4.49
33 34 3.777925 GCTACACGGCACTGCGTG 61.778 66.667 18.41 18.41 38.35 5.34
34 35 2.355837 CTACACGGCACTGCGTGT 60.356 61.111 24.70 24.70 43.77 4.49
35 36 1.954146 CTACACGGCACTGCGTGTT 60.954 57.895 25.76 15.54 42.45 3.32
36 37 1.495584 CTACACGGCACTGCGTGTTT 61.496 55.000 25.76 11.17 42.45 2.83
37 38 0.249363 TACACGGCACTGCGTGTTTA 60.249 50.000 25.76 13.56 42.45 2.01
38 39 1.204062 CACGGCACTGCGTGTTTAG 59.796 57.895 14.21 3.30 35.75 1.85
39 40 1.227438 ACGGCACTGCGTGTTTAGT 60.227 52.632 9.76 3.77 35.75 2.24
40 41 1.204062 CGGCACTGCGTGTTTAGTG 59.796 57.895 9.76 0.00 45.40 2.74
41 42 1.574428 GGCACTGCGTGTTTAGTGG 59.426 57.895 9.76 0.00 43.41 4.00
42 43 1.164041 GGCACTGCGTGTTTAGTGGT 61.164 55.000 9.76 0.00 43.41 4.16
43 44 1.504359 GCACTGCGTGTTTAGTGGTA 58.496 50.000 9.76 0.00 43.41 3.25
44 45 1.868498 GCACTGCGTGTTTAGTGGTAA 59.132 47.619 9.76 0.00 43.41 2.85
45 46 2.349155 GCACTGCGTGTTTAGTGGTAAC 60.349 50.000 9.76 0.00 43.41 2.50
46 47 2.097104 CACTGCGTGTTTAGTGGTAACG 60.097 50.000 0.00 0.00 40.38 3.18
47 48 2.223782 ACTGCGTGTTTAGTGGTAACGA 60.224 45.455 0.00 0.00 42.51 3.85
48 49 2.126467 TGCGTGTTTAGTGGTAACGAC 58.874 47.619 0.00 0.00 42.51 4.34
61 62 4.667519 GGTAACGACCTGTAATCCATCT 57.332 45.455 0.00 0.00 43.16 2.90
62 63 4.618965 GGTAACGACCTGTAATCCATCTC 58.381 47.826 0.00 0.00 43.16 2.75
63 64 3.821421 AACGACCTGTAATCCATCTCC 57.179 47.619 0.00 0.00 0.00 3.71
64 65 2.040178 ACGACCTGTAATCCATCTCCC 58.960 52.381 0.00 0.00 0.00 4.30
65 66 2.039418 CGACCTGTAATCCATCTCCCA 58.961 52.381 0.00 0.00 0.00 4.37
66 67 2.634940 CGACCTGTAATCCATCTCCCAT 59.365 50.000 0.00 0.00 0.00 4.00
67 68 3.832490 CGACCTGTAATCCATCTCCCATA 59.168 47.826 0.00 0.00 0.00 2.74
68 69 4.283467 CGACCTGTAATCCATCTCCCATAA 59.717 45.833 0.00 0.00 0.00 1.90
69 70 5.552178 GACCTGTAATCCATCTCCCATAAC 58.448 45.833 0.00 0.00 0.00 1.89
70 71 4.975147 ACCTGTAATCCATCTCCCATAACA 59.025 41.667 0.00 0.00 0.00 2.41
71 72 5.612688 ACCTGTAATCCATCTCCCATAACAT 59.387 40.000 0.00 0.00 0.00 2.71
72 73 5.942236 CCTGTAATCCATCTCCCATAACATG 59.058 44.000 0.00 0.00 0.00 3.21
73 74 6.466326 CCTGTAATCCATCTCCCATAACATGT 60.466 42.308 0.00 0.00 0.00 3.21
74 75 6.910191 TGTAATCCATCTCCCATAACATGTT 58.090 36.000 16.68 16.68 0.00 2.71
75 76 8.040002 TGTAATCCATCTCCCATAACATGTTA 57.960 34.615 20.14 20.14 0.00 2.41
76 77 8.668653 TGTAATCCATCTCCCATAACATGTTAT 58.331 33.333 22.70 22.70 36.27 1.89
77 78 9.520515 GTAATCCATCTCCCATAACATGTTATT 57.479 33.333 25.20 12.64 33.79 1.40
78 79 8.413309 AATCCATCTCCCATAACATGTTATTG 57.587 34.615 25.20 21.55 33.79 1.90
79 80 6.306199 TCCATCTCCCATAACATGTTATTGG 58.694 40.000 30.09 30.09 38.81 3.16
80 81 6.070656 CCATCTCCCATAACATGTTATTGGT 58.929 40.000 32.31 19.73 38.66 3.67
81 82 6.550854 CCATCTCCCATAACATGTTATTGGTT 59.449 38.462 32.31 21.82 38.66 3.67
82 83 7.428020 CATCTCCCATAACATGTTATTGGTTG 58.572 38.462 32.31 27.14 38.66 3.77
83 84 6.489603 TCTCCCATAACATGTTATTGGTTGT 58.510 36.000 32.31 12.44 38.66 3.32
84 85 6.951198 TCTCCCATAACATGTTATTGGTTGTT 59.049 34.615 32.31 11.84 38.66 2.83
85 86 7.122055 TCTCCCATAACATGTTATTGGTTGTTC 59.878 37.037 32.31 0.00 38.66 3.18
86 87 6.951198 TCCCATAACATGTTATTGGTTGTTCT 59.049 34.615 32.31 10.65 38.66 3.01
87 88 7.035004 CCCATAACATGTTATTGGTTGTTCTG 58.965 38.462 28.63 16.59 35.05 3.02
88 89 6.531240 CCATAACATGTTATTGGTTGTTCTGC 59.469 38.462 25.20 0.00 33.79 4.26
89 90 4.159377 ACATGTTATTGGTTGTTCTGCG 57.841 40.909 0.00 0.00 0.00 5.18
90 91 2.697431 TGTTATTGGTTGTTCTGCGC 57.303 45.000 0.00 0.00 0.00 6.09
91 92 1.069568 TGTTATTGGTTGTTCTGCGCG 60.070 47.619 0.00 0.00 0.00 6.86
92 93 1.069500 GTTATTGGTTGTTCTGCGCGT 60.069 47.619 8.43 0.00 0.00 6.01
93 94 2.081725 TATTGGTTGTTCTGCGCGTA 57.918 45.000 8.43 0.71 0.00 4.42
94 95 0.796312 ATTGGTTGTTCTGCGCGTAG 59.204 50.000 18.85 18.85 0.00 3.51
95 96 1.225376 TTGGTTGTTCTGCGCGTAGG 61.225 55.000 24.11 5.86 0.00 3.18
96 97 1.373748 GGTTGTTCTGCGCGTAGGA 60.374 57.895 24.11 13.62 0.00 2.94
97 98 0.947180 GGTTGTTCTGCGCGTAGGAA 60.947 55.000 24.11 13.69 0.00 3.36
98 99 0.863144 GTTGTTCTGCGCGTAGGAAA 59.137 50.000 24.11 8.03 0.00 3.13
99 100 1.262151 GTTGTTCTGCGCGTAGGAAAA 59.738 47.619 24.11 14.58 0.00 2.29
100 101 1.803334 TGTTCTGCGCGTAGGAAAAT 58.197 45.000 24.11 0.00 0.00 1.82
101 102 2.147958 TGTTCTGCGCGTAGGAAAATT 58.852 42.857 24.11 0.00 0.00 1.82
102 103 2.550606 TGTTCTGCGCGTAGGAAAATTT 59.449 40.909 24.11 0.00 0.00 1.82
103 104 3.003897 TGTTCTGCGCGTAGGAAAATTTT 59.996 39.130 24.11 2.28 0.00 1.82
104 105 4.213694 TGTTCTGCGCGTAGGAAAATTTTA 59.786 37.500 24.11 0.00 0.00 1.52
105 106 5.148568 GTTCTGCGCGTAGGAAAATTTTAA 58.851 37.500 24.11 4.76 0.00 1.52
106 107 5.554822 TCTGCGCGTAGGAAAATTTTAAT 57.445 34.783 24.11 0.00 0.00 1.40
107 108 5.945155 TCTGCGCGTAGGAAAATTTTAATT 58.055 33.333 24.11 0.00 0.00 1.40
108 109 6.383415 TCTGCGCGTAGGAAAATTTTAATTT 58.617 32.000 24.11 0.00 40.15 1.82
109 110 6.306837 TCTGCGCGTAGGAAAATTTTAATTTG 59.693 34.615 24.11 0.00 38.53 2.32
110 111 5.164041 TGCGCGTAGGAAAATTTTAATTTGC 60.164 36.000 8.43 5.30 38.53 3.68
111 112 5.164041 GCGCGTAGGAAAATTTTAATTTGCA 60.164 36.000 8.43 0.00 38.53 4.08
112 113 6.457676 CGCGTAGGAAAATTTTAATTTGCAG 58.542 36.000 2.75 0.41 38.53 4.41
113 114 6.088883 CGCGTAGGAAAATTTTAATTTGCAGT 59.911 34.615 2.75 0.00 38.53 4.40
114 115 7.445040 GCGTAGGAAAATTTTAATTTGCAGTC 58.555 34.615 2.75 0.33 38.53 3.51
115 116 7.653783 CGTAGGAAAATTTTAATTTGCAGTCG 58.346 34.615 2.75 5.40 38.53 4.18
116 117 7.535940 CGTAGGAAAATTTTAATTTGCAGTCGA 59.464 33.333 2.75 0.00 38.53 4.20
117 118 9.353999 GTAGGAAAATTTTAATTTGCAGTCGAT 57.646 29.630 2.75 0.00 38.53 3.59
118 119 8.243289 AGGAAAATTTTAATTTGCAGTCGATG 57.757 30.769 2.75 0.00 38.53 3.84
127 128 4.835927 CAGTCGATGCACCCTACC 57.164 61.111 0.00 0.00 0.00 3.18
128 129 1.226974 CAGTCGATGCACCCTACCG 60.227 63.158 0.00 0.00 0.00 4.02
129 130 1.681327 AGTCGATGCACCCTACCGT 60.681 57.895 0.00 0.00 0.00 4.83
130 131 0.394762 AGTCGATGCACCCTACCGTA 60.395 55.000 0.00 0.00 0.00 4.02
131 132 0.030369 GTCGATGCACCCTACCGTAG 59.970 60.000 0.00 0.00 0.00 3.51
132 133 0.107066 TCGATGCACCCTACCGTAGA 60.107 55.000 7.16 0.00 0.00 2.59
133 134 0.742505 CGATGCACCCTACCGTAGAA 59.257 55.000 7.16 0.00 0.00 2.10
134 135 1.535437 CGATGCACCCTACCGTAGAAC 60.535 57.143 7.16 0.00 0.00 3.01
135 136 0.828677 ATGCACCCTACCGTAGAACC 59.171 55.000 7.16 0.00 0.00 3.62
136 137 1.259840 TGCACCCTACCGTAGAACCC 61.260 60.000 7.16 0.00 0.00 4.11
137 138 1.259840 GCACCCTACCGTAGAACCCA 61.260 60.000 7.16 0.00 0.00 4.51
138 139 1.269012 CACCCTACCGTAGAACCCAA 58.731 55.000 7.16 0.00 0.00 4.12
148 149 3.334691 CGTAGAACCCAACATCATGTGT 58.665 45.455 0.00 0.00 44.84 3.72
150 151 2.426522 AGAACCCAACATCATGTGTCG 58.573 47.619 0.00 0.00 41.14 4.35
182 183 1.973138 CGTATCGTCGAACAGGTTGT 58.027 50.000 0.00 0.00 0.00 3.32
221 222 0.605589 CATAGGGATCTCCAGCGACC 59.394 60.000 0.00 0.00 38.24 4.79
255 256 1.909302 CCTGTTGGACATCTGGTAGGT 59.091 52.381 0.00 0.00 34.57 3.08
256 257 3.104512 CCTGTTGGACATCTGGTAGGTA 58.895 50.000 0.00 0.00 34.57 3.08
259 260 3.904965 TGTTGGACATCTGGTAGGTAACA 59.095 43.478 0.00 0.00 41.41 2.41
260 261 4.534500 TGTTGGACATCTGGTAGGTAACAT 59.466 41.667 0.00 0.00 41.41 2.71
324 325 1.000717 TGCGATCACACTCACTTTCGA 60.001 47.619 0.00 0.00 0.00 3.71
325 326 1.387084 GCGATCACACTCACTTTCGAC 59.613 52.381 0.00 0.00 0.00 4.20
341 342 1.137825 GACGAGGTGGAGAAGCGAG 59.862 63.158 0.00 0.00 0.00 5.03
359 360 3.365291 GATGCGCCTGGGTCGTGTA 62.365 63.158 4.18 0.00 0.00 2.90
401 403 2.279851 CGTTGTGGAGGTGCACGA 60.280 61.111 11.45 0.00 0.00 4.35
437 439 4.096003 GCGGGTAGCCAAGGAGCA 62.096 66.667 12.31 0.00 40.81 4.26
474 476 4.503314 GCGGCAGCAAGAATGGGC 62.503 66.667 3.18 0.00 44.35 5.36
482 484 2.125106 AAGAATGGGCGGCTCGTC 60.125 61.111 9.56 3.51 0.00 4.20
483 485 2.954684 AAGAATGGGCGGCTCGTCA 61.955 57.895 9.56 0.00 30.88 4.35
484 486 3.195698 GAATGGGCGGCTCGTCAC 61.196 66.667 9.56 0.00 30.88 3.67
487 489 4.980805 TGGGCGGCTCGTCACAAC 62.981 66.667 9.56 0.00 30.88 3.32
498 500 0.316204 CGTCACAACGGAACCCTAGT 59.684 55.000 0.00 0.00 45.21 2.57
504 506 2.764572 ACAACGGAACCCTAGTATGAGG 59.235 50.000 0.00 0.00 36.23 3.86
510 512 3.074788 CCCTAGTATGAGGAGGGCC 57.925 63.158 0.00 0.00 43.55 5.80
533 535 2.002586 CTACGTGGCCTTGACAATGAG 58.997 52.381 3.32 0.00 0.00 2.90
534 536 0.606401 ACGTGGCCTTGACAATGAGG 60.606 55.000 3.32 0.00 36.09 3.86
535 537 1.308069 CGTGGCCTTGACAATGAGGG 61.308 60.000 3.32 0.00 33.52 4.30
537 539 3.608432 GCCTTGACAATGAGGGCC 58.392 61.111 0.00 0.00 37.12 5.80
538 540 1.000396 GCCTTGACAATGAGGGCCT 60.000 57.895 5.25 5.25 37.12 5.19
539 541 1.034292 GCCTTGACAATGAGGGCCTC 61.034 60.000 26.95 26.95 37.12 4.70
540 542 0.745845 CCTTGACAATGAGGGCCTCG 60.746 60.000 27.58 16.38 32.35 4.63
541 543 0.036010 CTTGACAATGAGGGCCTCGT 60.036 55.000 27.58 25.26 32.35 4.18
542 544 0.400213 TTGACAATGAGGGCCTCGTT 59.600 50.000 30.90 30.90 39.93 3.85
543 545 0.036388 TGACAATGAGGGCCTCGTTC 60.036 55.000 33.08 24.69 37.59 3.95
544 546 0.250513 GACAATGAGGGCCTCGTTCT 59.749 55.000 33.08 24.49 37.59 3.01
545 547 0.250513 ACAATGAGGGCCTCGTTCTC 59.749 55.000 33.08 9.60 37.59 2.87
546 548 0.539051 CAATGAGGGCCTCGTTCTCT 59.461 55.000 33.08 14.38 37.59 3.10
547 549 1.757118 CAATGAGGGCCTCGTTCTCTA 59.243 52.381 33.08 13.61 37.59 2.43
548 550 1.698506 ATGAGGGCCTCGTTCTCTAG 58.301 55.000 27.58 0.00 32.35 2.43
549 551 0.624254 TGAGGGCCTCGTTCTCTAGA 59.376 55.000 27.58 4.63 32.35 2.43
550 552 1.005569 TGAGGGCCTCGTTCTCTAGAA 59.994 52.381 27.58 3.84 32.35 2.10
560 562 2.815478 GTTCTCTAGAACGATGGCCTG 58.185 52.381 3.32 0.00 43.97 4.85
561 563 0.747255 TCTCTAGAACGATGGCCTGC 59.253 55.000 3.32 0.00 0.00 4.85
562 564 0.749649 CTCTAGAACGATGGCCTGCT 59.250 55.000 3.32 0.00 0.00 4.24
563 565 0.461548 TCTAGAACGATGGCCTGCTG 59.538 55.000 3.32 0.00 0.00 4.41
564 566 0.176680 CTAGAACGATGGCCTGCTGT 59.823 55.000 3.32 0.00 0.00 4.40
565 567 0.613260 TAGAACGATGGCCTGCTGTT 59.387 50.000 3.32 3.40 0.00 3.16
566 568 0.957395 AGAACGATGGCCTGCTGTTG 60.957 55.000 3.32 0.00 0.00 3.33
567 569 2.533391 GAACGATGGCCTGCTGTTGC 62.533 60.000 3.32 0.00 40.20 4.17
569 571 2.570181 GATGGCCTGCTGTTGCAC 59.430 61.111 3.32 0.00 45.31 4.57
570 572 3.332493 GATGGCCTGCTGTTGCACG 62.332 63.158 3.32 0.00 45.31 5.34
584 586 2.593436 CACGGGGGCGACAACTTT 60.593 61.111 0.00 0.00 0.00 2.66
585 587 2.190841 CACGGGGGCGACAACTTTT 61.191 57.895 0.00 0.00 0.00 2.27
586 588 1.454295 ACGGGGGCGACAACTTTTT 60.454 52.632 0.00 0.00 0.00 1.94
587 589 1.007849 CGGGGGCGACAACTTTTTG 60.008 57.895 0.00 0.00 38.83 2.44
588 590 1.300620 GGGGGCGACAACTTTTTGC 60.301 57.895 0.00 0.00 36.00 3.68
589 591 1.739667 GGGGCGACAACTTTTTGCT 59.260 52.632 0.00 0.00 36.00 3.91
590 592 0.318699 GGGGCGACAACTTTTTGCTC 60.319 55.000 0.00 0.00 36.00 4.26
591 593 0.668535 GGGCGACAACTTTTTGCTCT 59.331 50.000 0.00 0.00 36.00 4.09
592 594 1.600413 GGGCGACAACTTTTTGCTCTG 60.600 52.381 0.00 0.00 36.00 3.35
593 595 1.123655 GCGACAACTTTTTGCTCTGC 58.876 50.000 0.00 0.00 36.00 4.26
594 596 1.758783 CGACAACTTTTTGCTCTGCC 58.241 50.000 0.00 0.00 36.00 4.85
595 597 1.334869 CGACAACTTTTTGCTCTGCCT 59.665 47.619 0.00 0.00 36.00 4.75
596 598 2.603173 CGACAACTTTTTGCTCTGCCTC 60.603 50.000 0.00 0.00 36.00 4.70
597 599 1.334869 ACAACTTTTTGCTCTGCCTCG 59.665 47.619 0.00 0.00 36.00 4.63
598 600 0.312102 AACTTTTTGCTCTGCCTCGC 59.688 50.000 0.00 0.00 0.00 5.03
599 601 1.211190 CTTTTTGCTCTGCCTCGCC 59.789 57.895 0.00 0.00 0.00 5.54
600 602 2.205243 CTTTTTGCTCTGCCTCGCCC 62.205 60.000 0.00 0.00 0.00 6.13
601 603 2.974692 TTTTTGCTCTGCCTCGCCCA 62.975 55.000 0.00 0.00 0.00 5.36
602 604 3.907260 TTTGCTCTGCCTCGCCCAG 62.907 63.158 0.00 0.00 0.00 4.45
610 612 4.168291 CCTCGCCCAGCCCTCTTC 62.168 72.222 0.00 0.00 0.00 2.87
611 613 3.393970 CTCGCCCAGCCCTCTTCA 61.394 66.667 0.00 0.00 0.00 3.02
612 614 3.382803 CTCGCCCAGCCCTCTTCAG 62.383 68.421 0.00 0.00 0.00 3.02
614 616 4.039092 GCCCAGCCCTCTTCAGCA 62.039 66.667 0.00 0.00 0.00 4.41
615 617 3.004951 CCCAGCCCTCTTCAGCAT 58.995 61.111 0.00 0.00 0.00 3.79
616 618 1.153005 CCCAGCCCTCTTCAGCATC 60.153 63.158 0.00 0.00 0.00 3.91
617 619 1.633915 CCCAGCCCTCTTCAGCATCT 61.634 60.000 0.00 0.00 0.00 2.90
618 620 0.179051 CCAGCCCTCTTCAGCATCTC 60.179 60.000 0.00 0.00 0.00 2.75
619 621 0.831966 CAGCCCTCTTCAGCATCTCT 59.168 55.000 0.00 0.00 0.00 3.10
620 622 1.209990 CAGCCCTCTTCAGCATCTCTT 59.790 52.381 0.00 0.00 0.00 2.85
621 623 1.485895 AGCCCTCTTCAGCATCTCTTC 59.514 52.381 0.00 0.00 0.00 2.87
622 624 1.474855 GCCCTCTTCAGCATCTCTTCC 60.475 57.143 0.00 0.00 0.00 3.46
623 625 1.202510 CCCTCTTCAGCATCTCTTCCG 60.203 57.143 0.00 0.00 0.00 4.30
624 626 1.753649 CCTCTTCAGCATCTCTTCCGA 59.246 52.381 0.00 0.00 0.00 4.55
625 627 2.481104 CCTCTTCAGCATCTCTTCCGAC 60.481 54.545 0.00 0.00 0.00 4.79
626 628 1.133216 TCTTCAGCATCTCTTCCGACG 59.867 52.381 0.00 0.00 0.00 5.12
627 629 0.888619 TTCAGCATCTCTTCCGACGT 59.111 50.000 0.00 0.00 0.00 4.34
628 630 0.171231 TCAGCATCTCTTCCGACGTG 59.829 55.000 0.00 0.00 0.00 4.49
629 631 0.109086 CAGCATCTCTTCCGACGTGT 60.109 55.000 0.00 0.00 0.00 4.49
630 632 0.109086 AGCATCTCTTCCGACGTGTG 60.109 55.000 0.00 0.00 0.00 3.82
631 633 1.687494 GCATCTCTTCCGACGTGTGC 61.687 60.000 0.00 0.00 0.00 4.57
632 634 0.388520 CATCTCTTCCGACGTGTGCA 60.389 55.000 0.00 0.00 0.00 4.57
633 635 0.388649 ATCTCTTCCGACGTGTGCAC 60.389 55.000 10.75 10.75 0.00 4.57
634 636 2.022129 CTCTTCCGACGTGTGCACC 61.022 63.158 15.69 4.74 0.00 5.01
635 637 2.279851 CTTCCGACGTGTGCACCA 60.280 61.111 15.69 0.00 0.00 4.17
636 638 1.667830 CTTCCGACGTGTGCACCAT 60.668 57.895 15.69 0.00 0.00 3.55
637 639 1.227704 TTCCGACGTGTGCACCATT 60.228 52.632 15.69 0.00 0.00 3.16
638 640 0.816018 TTCCGACGTGTGCACCATTT 60.816 50.000 15.69 0.00 0.00 2.32
639 641 0.816018 TCCGACGTGTGCACCATTTT 60.816 50.000 15.69 0.00 0.00 1.82
640 642 0.869068 CCGACGTGTGCACCATTTTA 59.131 50.000 15.69 0.00 0.00 1.52
641 643 1.264557 CCGACGTGTGCACCATTTTAA 59.735 47.619 15.69 0.00 0.00 1.52
642 644 2.287069 CCGACGTGTGCACCATTTTAAA 60.287 45.455 15.69 0.00 0.00 1.52
643 645 2.717011 CGACGTGTGCACCATTTTAAAC 59.283 45.455 15.69 1.71 0.00 2.01
644 646 3.547214 CGACGTGTGCACCATTTTAAACT 60.547 43.478 15.69 0.00 0.00 2.66
645 647 4.356289 GACGTGTGCACCATTTTAAACTT 58.644 39.130 15.69 0.00 0.00 2.66
646 648 4.356289 ACGTGTGCACCATTTTAAACTTC 58.644 39.130 15.69 0.00 0.00 3.01
647 649 4.097286 ACGTGTGCACCATTTTAAACTTCT 59.903 37.500 15.69 0.00 0.00 2.85
648 650 5.040635 CGTGTGCACCATTTTAAACTTCTT 58.959 37.500 15.69 0.00 0.00 2.52
649 651 5.173131 CGTGTGCACCATTTTAAACTTCTTC 59.827 40.000 15.69 0.00 0.00 2.87
650 652 5.173131 GTGTGCACCATTTTAAACTTCTTCG 59.827 40.000 15.69 0.00 0.00 3.79
651 653 5.066634 TGTGCACCATTTTAAACTTCTTCGA 59.933 36.000 15.69 0.00 0.00 3.71
652 654 5.974751 GTGCACCATTTTAAACTTCTTCGAA 59.025 36.000 5.22 0.00 0.00 3.71
653 655 6.640907 GTGCACCATTTTAAACTTCTTCGAAT 59.359 34.615 5.22 0.00 0.00 3.34
654 656 6.640499 TGCACCATTTTAAACTTCTTCGAATG 59.360 34.615 0.00 0.00 0.00 2.67
655 657 6.861055 GCACCATTTTAAACTTCTTCGAATGA 59.139 34.615 0.00 0.00 0.00 2.57
656 658 7.061094 GCACCATTTTAAACTTCTTCGAATGAG 59.939 37.037 0.00 2.19 0.00 2.90
657 659 7.538678 CACCATTTTAAACTTCTTCGAATGAGG 59.461 37.037 0.00 1.89 0.00 3.86
658 660 6.528072 CCATTTTAAACTTCTTCGAATGAGGC 59.472 38.462 0.00 0.00 0.00 4.70
659 661 4.921470 TTAAACTTCTTCGAATGAGGCG 57.079 40.909 0.00 0.00 0.00 5.52
660 662 2.743636 AACTTCTTCGAATGAGGCGA 57.256 45.000 0.00 0.00 35.76 5.54
661 663 1.997669 ACTTCTTCGAATGAGGCGAC 58.002 50.000 0.00 0.00 37.52 5.19
662 664 1.281899 CTTCTTCGAATGAGGCGACC 58.718 55.000 0.00 0.00 37.52 4.79
663 665 0.457853 TTCTTCGAATGAGGCGACCG 60.458 55.000 0.00 0.00 37.52 4.79
664 666 1.138883 CTTCGAATGAGGCGACCGA 59.861 57.895 0.00 0.00 37.52 4.69
665 667 1.140407 CTTCGAATGAGGCGACCGAC 61.140 60.000 0.00 0.00 37.52 4.79
666 668 2.860690 TTCGAATGAGGCGACCGACG 62.861 60.000 0.00 0.00 45.66 5.12
667 669 2.488355 GAATGAGGCGACCGACGA 59.512 61.111 0.00 0.00 45.77 4.20
668 670 1.153901 GAATGAGGCGACCGACGAA 60.154 57.895 0.00 0.00 45.77 3.85
669 671 0.734942 GAATGAGGCGACCGACGAAA 60.735 55.000 0.00 0.00 45.77 3.46
670 672 0.320073 AATGAGGCGACCGACGAAAA 60.320 50.000 0.00 0.00 45.77 2.29
671 673 0.320073 ATGAGGCGACCGACGAAAAA 60.320 50.000 0.00 0.00 45.77 1.94
692 694 5.818136 AAATCAGGATAAATGTGTCACCG 57.182 39.130 0.00 0.00 0.00 4.94
693 695 4.753516 ATCAGGATAAATGTGTCACCGA 57.246 40.909 0.00 0.00 0.00 4.69
694 696 3.857052 TCAGGATAAATGTGTCACCGAC 58.143 45.455 0.00 0.00 0.00 4.79
695 697 3.259625 TCAGGATAAATGTGTCACCGACA 59.740 43.478 0.00 0.00 40.50 4.35
696 698 4.000325 CAGGATAAATGTGTCACCGACAA 59.000 43.478 0.00 0.00 44.49 3.18
697 699 4.454161 CAGGATAAATGTGTCACCGACAAA 59.546 41.667 0.00 0.00 44.49 2.83
698 700 4.454504 AGGATAAATGTGTCACCGACAAAC 59.545 41.667 0.00 0.00 44.49 2.93
699 701 2.748461 AAATGTGTCACCGACAAACG 57.252 45.000 0.00 0.00 44.49 3.60
709 711 3.580904 CGACAAACGGGTCAGAGAA 57.419 52.632 5.25 0.00 37.66 2.87
710 712 1.860676 CGACAAACGGGTCAGAGAAA 58.139 50.000 5.25 0.00 37.66 2.52
711 713 1.792949 CGACAAACGGGTCAGAGAAAG 59.207 52.381 5.25 0.00 37.66 2.62
712 714 2.545113 CGACAAACGGGTCAGAGAAAGA 60.545 50.000 5.25 0.00 37.66 2.52
713 715 3.463944 GACAAACGGGTCAGAGAAAGAA 58.536 45.455 0.00 0.00 37.73 2.52
714 716 4.065789 GACAAACGGGTCAGAGAAAGAAT 58.934 43.478 0.00 0.00 37.73 2.40
715 717 5.223449 ACAAACGGGTCAGAGAAAGAATA 57.777 39.130 0.00 0.00 0.00 1.75
716 718 5.617252 ACAAACGGGTCAGAGAAAGAATAA 58.383 37.500 0.00 0.00 0.00 1.40
717 719 6.059484 ACAAACGGGTCAGAGAAAGAATAAA 58.941 36.000 0.00 0.00 0.00 1.40
718 720 6.204882 ACAAACGGGTCAGAGAAAGAATAAAG 59.795 38.462 0.00 0.00 0.00 1.85
719 721 5.740290 ACGGGTCAGAGAAAGAATAAAGA 57.260 39.130 0.00 0.00 0.00 2.52
720 722 6.301169 ACGGGTCAGAGAAAGAATAAAGAT 57.699 37.500 0.00 0.00 0.00 2.40
721 723 6.109359 ACGGGTCAGAGAAAGAATAAAGATG 58.891 40.000 0.00 0.00 0.00 2.90
722 724 6.070767 ACGGGTCAGAGAAAGAATAAAGATGA 60.071 38.462 0.00 0.00 0.00 2.92
723 725 6.818644 CGGGTCAGAGAAAGAATAAAGATGAA 59.181 38.462 0.00 0.00 0.00 2.57
724 726 7.201565 CGGGTCAGAGAAAGAATAAAGATGAAC 60.202 40.741 0.00 0.00 0.00 3.18
725 727 7.607991 GGGTCAGAGAAAGAATAAAGATGAACA 59.392 37.037 0.00 0.00 0.00 3.18
726 728 9.171877 GGTCAGAGAAAGAATAAAGATGAACAT 57.828 33.333 0.00 0.00 0.00 2.71
728 730 9.091784 TCAGAGAAAGAATAAAGATGAACATCG 57.908 33.333 8.79 0.00 42.48 3.84
729 731 7.850003 CAGAGAAAGAATAAAGATGAACATCGC 59.150 37.037 8.79 0.00 42.48 4.58
730 732 6.709643 AGAAAGAATAAAGATGAACATCGCG 58.290 36.000 0.00 0.00 42.48 5.87
731 733 4.458951 AGAATAAAGATGAACATCGCGC 57.541 40.909 0.00 0.00 42.48 6.86
732 734 2.930230 ATAAAGATGAACATCGCGCG 57.070 45.000 26.76 26.76 42.48 6.86
733 735 1.635844 TAAAGATGAACATCGCGCGT 58.364 45.000 30.98 14.63 42.48 6.01
734 736 0.796312 AAAGATGAACATCGCGCGTT 59.204 45.000 30.98 19.95 42.48 4.84
735 737 0.370273 AAGATGAACATCGCGCGTTC 59.630 50.000 30.98 25.09 42.48 3.95
737 739 2.850404 TGAACATCGCGCGTTCAC 59.150 55.556 28.65 17.91 45.85 3.18
738 740 1.951631 TGAACATCGCGCGTTCACA 60.952 52.632 28.65 20.16 45.85 3.58
739 741 1.288419 TGAACATCGCGCGTTCACAT 61.288 50.000 28.65 12.88 45.85 3.21
740 742 0.584054 GAACATCGCGCGTTCACATC 60.584 55.000 30.98 17.02 41.92 3.06
741 743 1.288419 AACATCGCGCGTTCACATCA 61.288 50.000 30.98 8.03 0.00 3.07
742 744 1.083806 ACATCGCGCGTTCACATCAT 61.084 50.000 30.98 10.37 0.00 2.45
743 745 0.652465 CATCGCGCGTTCACATCATG 60.652 55.000 30.98 18.83 0.00 3.07
744 746 1.083806 ATCGCGCGTTCACATCATGT 61.084 50.000 30.98 0.00 0.00 3.21
745 747 1.296145 CGCGCGTTCACATCATGTC 60.296 57.895 24.19 0.00 0.00 3.06
751 753 1.398041 CGTTCACATCATGTCCGCAAT 59.602 47.619 0.00 0.00 0.00 3.56
752 754 2.537529 CGTTCACATCATGTCCGCAATC 60.538 50.000 0.00 0.00 0.00 2.67
753 755 2.679837 GTTCACATCATGTCCGCAATCT 59.320 45.455 0.00 0.00 0.00 2.40
754 756 2.554142 TCACATCATGTCCGCAATCTC 58.446 47.619 0.00 0.00 0.00 2.75
764 766 2.387445 CGCAATCTCGCAAACCCGA 61.387 57.895 0.00 0.00 35.68 5.14
766 768 1.298859 GCAATCTCGCAAACCCGACT 61.299 55.000 0.00 0.00 33.12 4.18
783 793 1.815421 CTGGCCGGAAATGAGTCGG 60.815 63.158 5.28 0.00 45.84 4.79
786 796 2.125673 CCGGAAATGAGTCGGCGT 60.126 61.111 6.85 0.00 37.25 5.68
827 1124 2.030007 CCAAGAAAAGGAGCGCATTTCA 60.030 45.455 21.61 0.00 35.91 2.69
832 1129 1.160137 AAGGAGCGCATTTCACACTC 58.840 50.000 11.47 0.00 0.00 3.51
834 1131 1.648467 GGAGCGCATTTCACACTCCC 61.648 60.000 11.47 0.00 40.91 4.30
1008 1331 1.276138 CTTTTTGGGGCAATGGAGGTC 59.724 52.381 0.00 0.00 0.00 3.85
1077 1400 3.199508 CCTCTGACTCCATTGACCTCAAT 59.800 47.826 0.00 0.00 46.62 2.57
1869 2207 4.307443 TGATGATCGTGGTGATGTACTC 57.693 45.455 0.00 0.00 37.47 2.59
2016 2354 1.937108 GCTGTCAAGTCTAAGCGCAGT 60.937 52.381 11.47 0.00 0.00 4.40
2076 2414 2.059541 GTTGTTGACTACTGGCTCGAC 58.940 52.381 0.00 0.00 0.00 4.20
2208 2546 2.365617 ACTATCTATGCGACCAACTGGG 59.634 50.000 0.00 0.00 44.81 4.45
2335 2673 3.638160 GCCAATATTCCCATCTTCTGCAA 59.362 43.478 0.00 0.00 0.00 4.08
2354 2692 3.493176 GCAATTCAAGGGAAGTTTGCTGT 60.493 43.478 7.95 0.00 42.02 4.40
3085 3423 3.973206 TTCGTAATGCTTCTCTTGGGA 57.027 42.857 0.00 0.00 0.00 4.37
3086 3424 4.487714 TTCGTAATGCTTCTCTTGGGAT 57.512 40.909 0.00 0.00 0.00 3.85
3087 3425 5.607939 TTCGTAATGCTTCTCTTGGGATA 57.392 39.130 0.00 0.00 0.00 2.59
3088 3426 5.201713 TCGTAATGCTTCTCTTGGGATAG 57.798 43.478 0.00 0.00 0.00 2.08
3089 3427 4.649674 TCGTAATGCTTCTCTTGGGATAGT 59.350 41.667 0.00 0.00 0.00 2.12
3090 3428 4.985409 CGTAATGCTTCTCTTGGGATAGTC 59.015 45.833 0.00 0.00 0.00 2.59
3091 3429 3.742433 ATGCTTCTCTTGGGATAGTCG 57.258 47.619 0.00 0.00 0.00 4.18
3135 3474 4.781934 ACTCTGCTGGTAATATTCCCAAC 58.218 43.478 1.00 0.00 0.00 3.77
3150 3489 3.582164 TCCCAACCCTTGCTGTAATTTT 58.418 40.909 0.00 0.00 0.00 1.82
3247 3586 2.472695 TATGCCTGTGTGACCTGTTC 57.527 50.000 0.00 0.00 0.00 3.18
3368 3710 2.291741 GCTTATGTATGGTCAAGCCTGC 59.708 50.000 0.00 0.00 37.92 4.85
3389 3731 7.523873 GCCTGCTTAGTTTTCTTCCTAACAATT 60.524 37.037 0.00 0.00 0.00 2.32
3466 3808 9.791820 TGATGAGCATGATAAACAGTTTAATTG 57.208 29.630 9.84 8.77 0.00 2.32
3571 3914 6.095377 GGTTCCTTGAGCAAGATTAACATTG 58.905 40.000 11.61 0.00 40.79 2.82
3900 4246 9.287373 GTTCTAGTATACTAAGGCTGTATCTGT 57.713 37.037 13.51 0.00 33.32 3.41
3901 4247 9.863650 TTCTAGTATACTAAGGCTGTATCTGTT 57.136 33.333 13.51 0.00 33.32 3.16
3904 4250 8.991783 AGTATACTAAGGCTGTATCTGTTACA 57.008 34.615 2.75 0.00 38.50 2.41
3922 4268 9.305555 TCTGTTACATTACATATACTACTCCCC 57.694 37.037 0.00 0.00 0.00 4.81
3960 4306 4.455877 CGACAATTAATATGAAGGAGGGGC 59.544 45.833 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.902531 TAGCGGAAGAAGAGTTGGGG 59.097 55.000 0.00 0.00 0.00 4.96
1 2 1.275291 TGTAGCGGAAGAAGAGTTGGG 59.725 52.381 0.00 0.00 0.00 4.12
2 3 2.338500 GTGTAGCGGAAGAAGAGTTGG 58.662 52.381 0.00 0.00 0.00 3.77
3 4 1.986378 CGTGTAGCGGAAGAAGAGTTG 59.014 52.381 0.00 0.00 36.85 3.16
4 5 2.349297 CGTGTAGCGGAAGAAGAGTT 57.651 50.000 0.00 0.00 36.85 3.01
27 28 2.154389 GTCGTTACCACTAAACACGCAG 59.846 50.000 0.00 0.00 0.00 5.18
28 29 2.126467 GTCGTTACCACTAAACACGCA 58.874 47.619 0.00 0.00 0.00 5.24
29 30 1.456923 GGTCGTTACCACTAAACACGC 59.543 52.381 0.00 0.00 45.98 5.34
41 42 4.501058 GGGAGATGGATTACAGGTCGTTAC 60.501 50.000 0.00 0.00 0.00 2.50
42 43 3.640029 GGGAGATGGATTACAGGTCGTTA 59.360 47.826 0.00 0.00 0.00 3.18
43 44 2.434702 GGGAGATGGATTACAGGTCGTT 59.565 50.000 0.00 0.00 0.00 3.85
44 45 2.040178 GGGAGATGGATTACAGGTCGT 58.960 52.381 0.00 0.00 0.00 4.34
45 46 2.039418 TGGGAGATGGATTACAGGTCG 58.961 52.381 0.00 0.00 0.00 4.79
46 47 5.071788 TGTTATGGGAGATGGATTACAGGTC 59.928 44.000 0.00 0.00 0.00 3.85
47 48 4.975147 TGTTATGGGAGATGGATTACAGGT 59.025 41.667 0.00 0.00 0.00 4.00
48 49 5.567037 TGTTATGGGAGATGGATTACAGG 57.433 43.478 0.00 0.00 0.00 4.00
49 50 6.537355 ACATGTTATGGGAGATGGATTACAG 58.463 40.000 0.00 0.00 33.60 2.74
50 51 6.514012 ACATGTTATGGGAGATGGATTACA 57.486 37.500 0.00 0.00 33.60 2.41
51 52 9.520515 AATAACATGTTATGGGAGATGGATTAC 57.479 33.333 27.50 0.00 36.04 1.89
52 53 9.519191 CAATAACATGTTATGGGAGATGGATTA 57.481 33.333 27.50 0.70 36.04 1.75
53 54 7.452501 CCAATAACATGTTATGGGAGATGGATT 59.547 37.037 35.11 15.16 45.45 3.01
54 55 6.950041 CCAATAACATGTTATGGGAGATGGAT 59.050 38.462 35.11 14.14 45.45 3.41
55 56 6.126215 ACCAATAACATGTTATGGGAGATGGA 60.126 38.462 40.79 13.90 45.45 3.41
56 57 6.070656 ACCAATAACATGTTATGGGAGATGG 58.929 40.000 40.79 33.97 45.45 3.51
57 58 7.068593 ACAACCAATAACATGTTATGGGAGATG 59.931 37.037 40.79 34.73 45.45 2.90
58 59 7.125391 ACAACCAATAACATGTTATGGGAGAT 58.875 34.615 40.79 28.35 45.45 2.75
59 60 6.489603 ACAACCAATAACATGTTATGGGAGA 58.510 36.000 40.79 16.35 45.45 3.71
60 61 6.773976 ACAACCAATAACATGTTATGGGAG 57.226 37.500 40.79 33.98 45.45 4.30
61 62 6.951198 AGAACAACCAATAACATGTTATGGGA 59.049 34.615 40.79 17.68 45.45 4.37
63 64 6.531240 GCAGAACAACCAATAACATGTTATGG 59.469 38.462 27.50 27.62 42.30 2.74
64 65 6.251163 CGCAGAACAACCAATAACATGTTATG 59.749 38.462 27.50 19.54 43.90 1.90
65 66 6.321717 CGCAGAACAACCAATAACATGTTAT 58.678 36.000 22.70 22.70 36.22 1.89
66 67 5.694816 CGCAGAACAACCAATAACATGTTA 58.305 37.500 20.14 20.14 36.22 2.41
67 68 4.545610 CGCAGAACAACCAATAACATGTT 58.454 39.130 16.68 16.68 38.62 2.71
68 69 3.611530 GCGCAGAACAACCAATAACATGT 60.612 43.478 0.30 0.00 0.00 3.21
69 70 2.916716 GCGCAGAACAACCAATAACATG 59.083 45.455 0.30 0.00 0.00 3.21
70 71 2.414029 CGCGCAGAACAACCAATAACAT 60.414 45.455 8.75 0.00 0.00 2.71
71 72 1.069568 CGCGCAGAACAACCAATAACA 60.070 47.619 8.75 0.00 0.00 2.41
72 73 1.069500 ACGCGCAGAACAACCAATAAC 60.069 47.619 5.73 0.00 0.00 1.89
73 74 1.231221 ACGCGCAGAACAACCAATAA 58.769 45.000 5.73 0.00 0.00 1.40
74 75 1.996898 CTACGCGCAGAACAACCAATA 59.003 47.619 5.73 0.00 0.00 1.90
75 76 0.796312 CTACGCGCAGAACAACCAAT 59.204 50.000 5.73 0.00 0.00 3.16
76 77 1.225376 CCTACGCGCAGAACAACCAA 61.225 55.000 8.21 0.00 0.00 3.67
77 78 1.666553 CCTACGCGCAGAACAACCA 60.667 57.895 8.21 0.00 0.00 3.67
78 79 0.947180 TTCCTACGCGCAGAACAACC 60.947 55.000 8.21 0.00 0.00 3.77
79 80 0.863144 TTTCCTACGCGCAGAACAAC 59.137 50.000 8.21 0.00 0.00 3.32
80 81 1.584175 TTTTCCTACGCGCAGAACAA 58.416 45.000 8.21 3.09 0.00 2.83
81 82 1.803334 ATTTTCCTACGCGCAGAACA 58.197 45.000 8.21 1.18 0.00 3.18
82 83 2.894307 AATTTTCCTACGCGCAGAAC 57.106 45.000 8.21 0.00 0.00 3.01
83 84 3.907894 AAAATTTTCCTACGCGCAGAA 57.092 38.095 8.21 4.85 0.00 3.02
84 85 5.554822 ATTAAAATTTTCCTACGCGCAGA 57.445 34.783 8.21 0.00 0.00 4.26
85 86 6.457676 CAAATTAAAATTTTCCTACGCGCAG 58.542 36.000 5.73 1.19 36.52 5.18
86 87 5.164041 GCAAATTAAAATTTTCCTACGCGCA 60.164 36.000 5.73 0.00 36.52 6.09
87 88 5.164041 TGCAAATTAAAATTTTCCTACGCGC 60.164 36.000 5.73 0.00 36.52 6.86
88 89 6.088883 ACTGCAAATTAAAATTTTCCTACGCG 59.911 34.615 6.72 3.53 36.52 6.01
89 90 7.346208 ACTGCAAATTAAAATTTTCCTACGC 57.654 32.000 6.72 7.09 36.52 4.42
90 91 7.535940 TCGACTGCAAATTAAAATTTTCCTACG 59.464 33.333 6.72 0.00 36.52 3.51
91 92 8.736751 TCGACTGCAAATTAAAATTTTCCTAC 57.263 30.769 6.72 0.00 36.52 3.18
92 93 9.352784 CATCGACTGCAAATTAAAATTTTCCTA 57.647 29.630 6.72 0.00 36.52 2.94
93 94 8.243289 CATCGACTGCAAATTAAAATTTTCCT 57.757 30.769 6.72 0.00 36.52 3.36
110 111 1.226974 CGGTAGGGTGCATCGACTG 60.227 63.158 0.00 0.00 0.00 3.51
111 112 0.394762 TACGGTAGGGTGCATCGACT 60.395 55.000 0.00 0.00 0.00 4.18
112 113 0.030369 CTACGGTAGGGTGCATCGAC 59.970 60.000 7.30 0.00 0.00 4.20
113 114 0.107066 TCTACGGTAGGGTGCATCGA 60.107 55.000 14.82 0.00 0.00 3.59
114 115 0.742505 TTCTACGGTAGGGTGCATCG 59.257 55.000 14.82 0.00 0.00 3.84
115 116 1.202498 GGTTCTACGGTAGGGTGCATC 60.202 57.143 14.82 0.00 0.00 3.91
116 117 0.828677 GGTTCTACGGTAGGGTGCAT 59.171 55.000 14.82 0.00 0.00 3.96
117 118 1.259840 GGGTTCTACGGTAGGGTGCA 61.260 60.000 14.82 0.00 0.00 4.57
118 119 1.259840 TGGGTTCTACGGTAGGGTGC 61.260 60.000 14.82 3.64 0.00 5.01
119 120 1.066645 GTTGGGTTCTACGGTAGGGTG 60.067 57.143 14.82 0.00 0.00 4.61
120 121 1.269958 GTTGGGTTCTACGGTAGGGT 58.730 55.000 14.82 0.00 0.00 4.34
121 122 1.269012 TGTTGGGTTCTACGGTAGGG 58.731 55.000 14.82 0.00 0.00 3.53
122 123 2.498481 TGATGTTGGGTTCTACGGTAGG 59.502 50.000 14.82 0.00 0.00 3.18
123 124 3.880047 TGATGTTGGGTTCTACGGTAG 57.120 47.619 8.91 8.91 0.00 3.18
124 125 3.516300 ACATGATGTTGGGTTCTACGGTA 59.484 43.478 0.00 0.00 0.00 4.02
125 126 2.304761 ACATGATGTTGGGTTCTACGGT 59.695 45.455 0.00 0.00 0.00 4.83
126 127 2.677836 CACATGATGTTGGGTTCTACGG 59.322 50.000 0.00 0.00 0.00 4.02
127 128 3.334691 ACACATGATGTTGGGTTCTACG 58.665 45.455 0.00 0.00 38.98 3.51
128 129 3.370978 CGACACATGATGTTGGGTTCTAC 59.629 47.826 0.00 0.00 43.56 2.59
129 130 3.007506 ACGACACATGATGTTGGGTTCTA 59.992 43.478 15.63 0.00 45.96 2.10
130 131 2.224523 ACGACACATGATGTTGGGTTCT 60.225 45.455 15.63 0.00 45.96 3.01
131 132 2.151202 ACGACACATGATGTTGGGTTC 58.849 47.619 15.63 0.00 45.96 3.62
132 133 2.151202 GACGACACATGATGTTGGGTT 58.849 47.619 15.63 1.13 45.96 4.11
133 134 1.808411 GACGACACATGATGTTGGGT 58.192 50.000 15.63 0.00 45.96 4.51
134 135 0.721154 CGACGACACATGATGTTGGG 59.279 55.000 15.63 0.00 45.96 4.12
135 136 1.390123 GACGACGACACATGATGTTGG 59.610 52.381 0.00 8.62 45.96 3.77
136 137 1.057706 CGACGACGACACATGATGTTG 59.942 52.381 0.00 6.90 46.95 3.33
137 138 1.336877 CGACGACGACACATGATGTT 58.663 50.000 0.00 0.00 43.56 2.71
150 151 4.203076 ATACGCCAGCCCGACGAC 62.203 66.667 0.00 0.00 0.00 4.34
182 183 2.267642 CAATCTTCCCGACGCCCA 59.732 61.111 0.00 0.00 0.00 5.36
252 253 1.202710 TCAACGCCACACATGTTACCT 60.203 47.619 0.00 0.00 0.00 3.08
255 256 1.202710 ACCTCAACGCCACACATGTTA 60.203 47.619 0.00 0.00 0.00 2.41
256 257 0.465460 ACCTCAACGCCACACATGTT 60.465 50.000 0.00 0.00 0.00 2.71
259 260 1.667830 CGACCTCAACGCCACACAT 60.668 57.895 0.00 0.00 0.00 3.21
260 261 2.094757 ATCGACCTCAACGCCACACA 62.095 55.000 0.00 0.00 0.00 3.72
321 322 2.687805 CGCTTCTCCACCTCGTCGA 61.688 63.158 0.00 0.00 0.00 4.20
324 325 0.681564 ATCTCGCTTCTCCACCTCGT 60.682 55.000 0.00 0.00 0.00 4.18
325 326 0.248825 CATCTCGCTTCTCCACCTCG 60.249 60.000 0.00 0.00 0.00 4.63
341 342 3.365291 TACACGACCCAGGCGCATC 62.365 63.158 10.83 0.00 0.00 3.91
350 351 2.762875 CCCTCCCCTACACGACCC 60.763 72.222 0.00 0.00 0.00 4.46
467 469 3.195698 GTGACGAGCCGCCCATTC 61.196 66.667 0.00 0.00 0.00 2.67
482 484 3.430374 CCTCATACTAGGGTTCCGTTGTG 60.430 52.174 8.38 0.00 32.55 3.33
483 485 2.764572 CCTCATACTAGGGTTCCGTTGT 59.235 50.000 0.00 4.43 32.55 3.32
484 486 3.028850 TCCTCATACTAGGGTTCCGTTG 58.971 50.000 0.00 0.00 37.24 4.10
487 489 2.240279 CCTCCTCATACTAGGGTTCCG 58.760 57.143 0.00 0.00 37.24 4.30
498 500 0.827925 CGTAGCAGGCCCTCCTCATA 60.828 60.000 0.00 0.00 41.93 2.15
504 506 4.840005 GCCACGTAGCAGGCCCTC 62.840 72.222 0.00 0.00 44.75 4.30
510 512 0.602638 TTGTCAAGGCCACGTAGCAG 60.603 55.000 8.54 0.00 0.00 4.24
541 543 1.137086 GCAGGCCATCGTTCTAGAGAA 59.863 52.381 5.01 0.00 0.00 2.87
542 544 0.747255 GCAGGCCATCGTTCTAGAGA 59.253 55.000 5.01 0.00 0.00 3.10
543 545 0.749649 AGCAGGCCATCGTTCTAGAG 59.250 55.000 5.01 0.00 0.00 2.43
544 546 0.461548 CAGCAGGCCATCGTTCTAGA 59.538 55.000 5.01 0.00 0.00 2.43
545 547 0.176680 ACAGCAGGCCATCGTTCTAG 59.823 55.000 5.01 0.00 0.00 2.43
546 548 0.613260 AACAGCAGGCCATCGTTCTA 59.387 50.000 5.01 0.00 0.00 2.10
547 549 0.957395 CAACAGCAGGCCATCGTTCT 60.957 55.000 5.01 0.00 0.00 3.01
548 550 1.503542 CAACAGCAGGCCATCGTTC 59.496 57.895 5.01 0.00 0.00 3.95
549 551 2.629656 GCAACAGCAGGCCATCGTT 61.630 57.895 5.01 0.00 0.00 3.85
550 552 3.058160 GCAACAGCAGGCCATCGT 61.058 61.111 5.01 0.00 0.00 3.73
551 553 3.057548 TGCAACAGCAGGCCATCG 61.058 61.111 5.01 0.00 33.59 3.84
552 554 2.570181 GTGCAACAGCAGGCCATC 59.430 61.111 5.01 0.00 39.30 3.51
553 555 3.367743 CGTGCAACAGCAGGCCAT 61.368 61.111 5.01 0.00 39.30 4.40
567 569 1.730451 AAAAAGTTGTCGCCCCCGTG 61.730 55.000 0.00 0.00 35.54 4.94
568 570 1.454295 AAAAAGTTGTCGCCCCCGT 60.454 52.632 0.00 0.00 35.54 5.28
569 571 1.007849 CAAAAAGTTGTCGCCCCCG 60.008 57.895 0.00 0.00 0.00 5.73
570 572 1.300620 GCAAAAAGTTGTCGCCCCC 60.301 57.895 0.00 0.00 37.06 5.40
571 573 0.318699 GAGCAAAAAGTTGTCGCCCC 60.319 55.000 0.00 0.00 37.06 5.80
572 574 0.668535 AGAGCAAAAAGTTGTCGCCC 59.331 50.000 0.00 0.00 37.06 6.13
573 575 1.758783 CAGAGCAAAAAGTTGTCGCC 58.241 50.000 0.00 0.00 37.06 5.54
574 576 1.123655 GCAGAGCAAAAAGTTGTCGC 58.876 50.000 0.00 0.00 37.06 5.19
575 577 1.334869 AGGCAGAGCAAAAAGTTGTCG 59.665 47.619 0.00 0.00 37.06 4.35
576 578 2.603173 CGAGGCAGAGCAAAAAGTTGTC 60.603 50.000 0.00 0.00 37.06 3.18
577 579 1.334869 CGAGGCAGAGCAAAAAGTTGT 59.665 47.619 0.00 0.00 37.06 3.32
578 580 1.927710 GCGAGGCAGAGCAAAAAGTTG 60.928 52.381 0.00 0.00 37.83 3.16
579 581 0.312102 GCGAGGCAGAGCAAAAAGTT 59.688 50.000 0.00 0.00 0.00 2.66
580 582 1.518903 GGCGAGGCAGAGCAAAAAGT 61.519 55.000 0.00 0.00 34.54 2.66
581 583 1.211190 GGCGAGGCAGAGCAAAAAG 59.789 57.895 0.00 0.00 34.54 2.27
582 584 2.268076 GGGCGAGGCAGAGCAAAAA 61.268 57.895 0.00 0.00 34.54 1.94
583 585 2.672996 GGGCGAGGCAGAGCAAAA 60.673 61.111 0.00 0.00 34.54 2.44
584 586 3.907260 CTGGGCGAGGCAGAGCAAA 62.907 63.158 0.00 0.00 34.54 3.68
585 587 4.399395 CTGGGCGAGGCAGAGCAA 62.399 66.667 0.00 0.00 34.54 3.91
593 595 4.168291 GAAGAGGGCTGGGCGAGG 62.168 72.222 0.00 0.00 0.00 4.63
594 596 3.382803 CTGAAGAGGGCTGGGCGAG 62.383 68.421 0.00 0.00 0.00 5.03
595 597 3.393970 CTGAAGAGGGCTGGGCGA 61.394 66.667 0.00 0.00 0.00 5.54
597 599 3.355957 ATGCTGAAGAGGGCTGGGC 62.356 63.158 0.00 0.00 0.00 5.36
598 600 1.153005 GATGCTGAAGAGGGCTGGG 60.153 63.158 0.00 0.00 0.00 4.45
599 601 0.179051 GAGATGCTGAAGAGGGCTGG 60.179 60.000 0.00 0.00 0.00 4.85
600 602 0.831966 AGAGATGCTGAAGAGGGCTG 59.168 55.000 0.00 0.00 0.00 4.85
601 603 1.485895 GAAGAGATGCTGAAGAGGGCT 59.514 52.381 0.00 0.00 0.00 5.19
602 604 1.474855 GGAAGAGATGCTGAAGAGGGC 60.475 57.143 0.00 0.00 0.00 5.19
603 605 1.202510 CGGAAGAGATGCTGAAGAGGG 60.203 57.143 0.00 0.00 0.00 4.30
604 606 1.753649 TCGGAAGAGATGCTGAAGAGG 59.246 52.381 0.00 0.00 34.84 3.69
605 607 2.794282 CGTCGGAAGAGATGCTGAAGAG 60.794 54.545 0.00 0.00 43.49 2.85
606 608 1.133216 CGTCGGAAGAGATGCTGAAGA 59.867 52.381 0.00 0.00 43.49 2.87
607 609 1.135257 ACGTCGGAAGAGATGCTGAAG 60.135 52.381 0.00 0.00 43.49 3.02
608 610 0.888619 ACGTCGGAAGAGATGCTGAA 59.111 50.000 0.00 0.00 43.49 3.02
609 611 0.171231 CACGTCGGAAGAGATGCTGA 59.829 55.000 0.00 0.00 43.49 4.26
610 612 0.109086 ACACGTCGGAAGAGATGCTG 60.109 55.000 0.00 0.00 43.49 4.41
611 613 0.109086 CACACGTCGGAAGAGATGCT 60.109 55.000 0.00 0.00 43.49 3.79
612 614 1.687494 GCACACGTCGGAAGAGATGC 61.687 60.000 0.00 1.10 43.49 3.91
613 615 0.388520 TGCACACGTCGGAAGAGATG 60.389 55.000 0.00 0.00 43.49 2.90
614 616 0.388649 GTGCACACGTCGGAAGAGAT 60.389 55.000 13.17 0.00 43.49 2.75
615 617 1.007734 GTGCACACGTCGGAAGAGA 60.008 57.895 13.17 0.00 43.49 3.10
616 618 2.022129 GGTGCACACGTCGGAAGAG 61.022 63.158 20.43 0.00 43.49 2.85
617 619 2.028484 GGTGCACACGTCGGAAGA 59.972 61.111 20.43 0.00 38.16 2.87
618 620 1.227999 AATGGTGCACACGTCGGAAG 61.228 55.000 20.43 0.00 0.00 3.46
619 621 0.816018 AAATGGTGCACACGTCGGAA 60.816 50.000 20.43 0.00 0.00 4.30
620 622 0.816018 AAAATGGTGCACACGTCGGA 60.816 50.000 20.43 0.00 0.00 4.55
621 623 0.869068 TAAAATGGTGCACACGTCGG 59.131 50.000 20.43 0.00 0.00 4.79
622 624 2.672188 TTAAAATGGTGCACACGTCG 57.328 45.000 20.43 0.00 0.00 5.12
623 625 3.959943 AGTTTAAAATGGTGCACACGTC 58.040 40.909 20.43 0.95 0.00 4.34
624 626 4.097286 AGAAGTTTAAAATGGTGCACACGT 59.903 37.500 20.43 6.70 0.00 4.49
625 627 4.606961 AGAAGTTTAAAATGGTGCACACG 58.393 39.130 20.43 0.00 0.00 4.49
626 628 5.173131 CGAAGAAGTTTAAAATGGTGCACAC 59.827 40.000 20.43 8.79 0.00 3.82
627 629 5.066634 TCGAAGAAGTTTAAAATGGTGCACA 59.933 36.000 20.43 5.24 0.00 4.57
628 630 5.516090 TCGAAGAAGTTTAAAATGGTGCAC 58.484 37.500 8.80 8.80 0.00 4.57
629 631 5.759506 TCGAAGAAGTTTAAAATGGTGCA 57.240 34.783 0.00 0.00 0.00 4.57
630 632 6.861055 TCATTCGAAGAAGTTTAAAATGGTGC 59.139 34.615 3.35 0.00 45.90 5.01
631 633 7.538678 CCTCATTCGAAGAAGTTTAAAATGGTG 59.461 37.037 3.35 0.00 45.90 4.17
632 634 7.593825 CCTCATTCGAAGAAGTTTAAAATGGT 58.406 34.615 3.35 0.00 45.90 3.55
633 635 6.528072 GCCTCATTCGAAGAAGTTTAAAATGG 59.472 38.462 3.35 0.00 45.90 3.16
634 636 6.249260 CGCCTCATTCGAAGAAGTTTAAAATG 59.751 38.462 3.35 0.00 45.90 2.32
635 637 6.148811 TCGCCTCATTCGAAGAAGTTTAAAAT 59.851 34.615 3.35 0.00 45.90 1.82
636 638 5.467399 TCGCCTCATTCGAAGAAGTTTAAAA 59.533 36.000 3.35 0.00 45.90 1.52
637 639 4.992319 TCGCCTCATTCGAAGAAGTTTAAA 59.008 37.500 3.35 0.00 45.90 1.52
638 640 4.387862 GTCGCCTCATTCGAAGAAGTTTAA 59.612 41.667 3.35 0.00 45.90 1.52
639 641 3.924686 GTCGCCTCATTCGAAGAAGTTTA 59.075 43.478 3.35 0.00 45.90 2.01
640 642 2.737252 GTCGCCTCATTCGAAGAAGTTT 59.263 45.455 3.35 0.00 45.90 2.66
641 643 2.338500 GTCGCCTCATTCGAAGAAGTT 58.662 47.619 3.35 0.00 45.90 2.66
642 644 1.404315 GGTCGCCTCATTCGAAGAAGT 60.404 52.381 3.35 0.00 45.90 3.01
643 645 1.281899 GGTCGCCTCATTCGAAGAAG 58.718 55.000 3.35 3.27 45.90 2.85
644 646 0.457853 CGGTCGCCTCATTCGAAGAA 60.458 55.000 3.35 0.00 45.90 2.52
645 647 1.138883 CGGTCGCCTCATTCGAAGA 59.861 57.895 3.35 0.63 37.73 2.87
646 648 1.138883 TCGGTCGCCTCATTCGAAG 59.861 57.895 3.35 0.00 37.73 3.79
647 649 1.153901 GTCGGTCGCCTCATTCGAA 60.154 57.895 0.00 0.00 37.73 3.71
648 650 2.488355 GTCGGTCGCCTCATTCGA 59.512 61.111 0.00 0.00 0.00 3.71
649 651 2.860690 TTCGTCGGTCGCCTCATTCG 62.861 60.000 0.00 0.00 39.67 3.34
650 652 0.734942 TTTCGTCGGTCGCCTCATTC 60.735 55.000 0.00 0.00 39.67 2.67
651 653 0.320073 TTTTCGTCGGTCGCCTCATT 60.320 50.000 0.00 0.00 39.67 2.57
652 654 0.320073 TTTTTCGTCGGTCGCCTCAT 60.320 50.000 0.00 0.00 39.67 2.90
653 655 1.067749 TTTTTCGTCGGTCGCCTCA 59.932 52.632 0.00 0.00 39.67 3.86
654 656 3.941035 TTTTTCGTCGGTCGCCTC 58.059 55.556 0.00 0.00 39.67 4.70
668 670 6.432783 TCGGTGACACATTTATCCTGATTTTT 59.567 34.615 8.08 0.00 0.00 1.94
669 671 5.943416 TCGGTGACACATTTATCCTGATTTT 59.057 36.000 8.08 0.00 0.00 1.82
670 672 5.354234 GTCGGTGACACATTTATCCTGATTT 59.646 40.000 8.08 0.00 32.09 2.17
671 673 4.876107 GTCGGTGACACATTTATCCTGATT 59.124 41.667 8.08 0.00 32.09 2.57
672 674 4.081142 TGTCGGTGACACATTTATCCTGAT 60.081 41.667 8.08 0.00 37.67 2.90
673 675 3.259625 TGTCGGTGACACATTTATCCTGA 59.740 43.478 8.08 0.00 37.67 3.86
674 676 3.595173 TGTCGGTGACACATTTATCCTG 58.405 45.455 8.08 0.00 37.67 3.86
675 677 3.973206 TGTCGGTGACACATTTATCCT 57.027 42.857 8.08 0.00 37.67 3.24
676 678 4.668177 CGTTTGTCGGTGACACATTTATCC 60.668 45.833 8.08 0.00 42.60 2.59
677 679 4.391358 CGTTTGTCGGTGACACATTTATC 58.609 43.478 8.08 0.00 42.60 1.75
678 680 4.398549 CGTTTGTCGGTGACACATTTAT 57.601 40.909 8.08 0.00 42.60 1.40
679 681 3.863396 CGTTTGTCGGTGACACATTTA 57.137 42.857 8.08 0.00 42.60 1.40
680 682 2.748461 CGTTTGTCGGTGACACATTT 57.252 45.000 8.08 0.00 42.60 2.32
691 693 1.792949 CTTTCTCTGACCCGTTTGTCG 59.207 52.381 0.00 0.00 38.11 4.35
692 694 3.107642 TCTTTCTCTGACCCGTTTGTC 57.892 47.619 0.00 0.00 35.77 3.18
693 695 3.553828 TTCTTTCTCTGACCCGTTTGT 57.446 42.857 0.00 0.00 0.00 2.83
694 696 6.426937 TCTTTATTCTTTCTCTGACCCGTTTG 59.573 38.462 0.00 0.00 0.00 2.93
695 697 6.531021 TCTTTATTCTTTCTCTGACCCGTTT 58.469 36.000 0.00 0.00 0.00 3.60
696 698 6.110411 TCTTTATTCTTTCTCTGACCCGTT 57.890 37.500 0.00 0.00 0.00 4.44
697 699 5.740290 TCTTTATTCTTTCTCTGACCCGT 57.260 39.130 0.00 0.00 0.00 5.28
698 700 6.341316 TCATCTTTATTCTTTCTCTGACCCG 58.659 40.000 0.00 0.00 0.00 5.28
699 701 7.607991 TGTTCATCTTTATTCTTTCTCTGACCC 59.392 37.037 0.00 0.00 0.00 4.46
700 702 8.553459 TGTTCATCTTTATTCTTTCTCTGACC 57.447 34.615 0.00 0.00 0.00 4.02
702 704 9.091784 CGATGTTCATCTTTATTCTTTCTCTGA 57.908 33.333 10.44 0.00 0.00 3.27
703 705 7.850003 GCGATGTTCATCTTTATTCTTTCTCTG 59.150 37.037 10.44 0.00 0.00 3.35
704 706 7.254252 CGCGATGTTCATCTTTATTCTTTCTCT 60.254 37.037 0.00 0.00 0.00 3.10
705 707 6.843279 CGCGATGTTCATCTTTATTCTTTCTC 59.157 38.462 0.00 0.00 0.00 2.87
706 708 6.709643 CGCGATGTTCATCTTTATTCTTTCT 58.290 36.000 0.00 0.00 0.00 2.52
707 709 5.393742 GCGCGATGTTCATCTTTATTCTTTC 59.606 40.000 12.10 0.00 0.00 2.62
708 710 5.266242 GCGCGATGTTCATCTTTATTCTTT 58.734 37.500 12.10 0.00 0.00 2.52
709 711 4.550831 CGCGCGATGTTCATCTTTATTCTT 60.551 41.667 28.94 0.00 0.00 2.52
710 712 3.060272 CGCGCGATGTTCATCTTTATTCT 60.060 43.478 28.94 0.00 0.00 2.40
711 713 3.210539 CGCGCGATGTTCATCTTTATTC 58.789 45.455 28.94 0.00 0.00 1.75
712 714 2.607635 ACGCGCGATGTTCATCTTTATT 59.392 40.909 39.36 4.34 0.00 1.40
713 715 2.201732 ACGCGCGATGTTCATCTTTAT 58.798 42.857 39.36 5.15 0.00 1.40
714 716 1.635844 ACGCGCGATGTTCATCTTTA 58.364 45.000 39.36 0.00 0.00 1.85
715 717 0.796312 AACGCGCGATGTTCATCTTT 59.204 45.000 39.36 13.43 0.00 2.52
716 718 0.370273 GAACGCGCGATGTTCATCTT 59.630 50.000 39.36 17.17 44.00 2.40
717 719 1.999051 GAACGCGCGATGTTCATCT 59.001 52.632 39.36 7.53 44.00 2.90
718 720 4.552797 GAACGCGCGATGTTCATC 57.447 55.556 39.36 17.25 44.00 2.92
721 723 0.584054 GATGTGAACGCGCGATGTTC 60.584 55.000 39.36 28.53 44.64 3.18
722 724 1.288419 TGATGTGAACGCGCGATGTT 61.288 50.000 39.36 21.46 0.00 2.71
723 725 1.083806 ATGATGTGAACGCGCGATGT 61.084 50.000 39.36 21.18 0.00 3.06
724 726 0.652465 CATGATGTGAACGCGCGATG 60.652 55.000 39.36 22.37 0.00 3.84
725 727 1.083806 ACATGATGTGAACGCGCGAT 61.084 50.000 39.36 27.77 0.00 4.58
726 728 1.682867 GACATGATGTGAACGCGCGA 61.683 55.000 39.36 14.91 0.00 5.87
727 729 1.296145 GACATGATGTGAACGCGCG 60.296 57.895 30.96 30.96 0.00 6.86
728 730 1.060937 GGACATGATGTGAACGCGC 59.939 57.895 5.73 0.00 0.00 6.86
729 731 1.344837 CGGACATGATGTGAACGCG 59.655 57.895 1.23 3.53 0.00 6.01
730 732 1.060937 GCGGACATGATGTGAACGC 59.939 57.895 18.33 18.33 44.12 4.84
731 733 0.795698 TTGCGGACATGATGTGAACG 59.204 50.000 1.23 6.18 35.02 3.95
732 734 2.679837 AGATTGCGGACATGATGTGAAC 59.320 45.455 1.23 0.00 0.00 3.18
733 735 2.938451 GAGATTGCGGACATGATGTGAA 59.062 45.455 1.23 0.00 0.00 3.18
734 736 2.554142 GAGATTGCGGACATGATGTGA 58.446 47.619 1.23 0.00 0.00 3.58
735 737 1.259770 CGAGATTGCGGACATGATGTG 59.740 52.381 1.23 0.00 0.00 3.21
736 738 1.575244 CGAGATTGCGGACATGATGT 58.425 50.000 0.00 0.00 0.00 3.06
737 739 0.234106 GCGAGATTGCGGACATGATG 59.766 55.000 0.00 0.00 0.00 3.07
738 740 0.179076 TGCGAGATTGCGGACATGAT 60.179 50.000 0.00 0.00 37.81 2.45
739 741 0.390998 TTGCGAGATTGCGGACATGA 60.391 50.000 0.00 0.00 37.81 3.07
740 742 0.447406 TTTGCGAGATTGCGGACATG 59.553 50.000 0.00 0.00 37.81 3.21
741 743 0.447801 GTTTGCGAGATTGCGGACAT 59.552 50.000 0.00 0.00 37.81 3.06
742 744 1.573829 GGTTTGCGAGATTGCGGACA 61.574 55.000 0.00 0.00 37.81 4.02
743 745 1.134694 GGTTTGCGAGATTGCGGAC 59.865 57.895 0.00 0.00 37.81 4.79
744 746 2.038269 GGGTTTGCGAGATTGCGGA 61.038 57.895 0.00 0.00 37.81 5.54
745 747 2.485122 GGGTTTGCGAGATTGCGG 59.515 61.111 0.00 0.00 37.81 5.69
751 753 2.342279 CCAGTCGGGTTTGCGAGA 59.658 61.111 0.00 0.00 0.00 4.04
752 754 3.423154 GCCAGTCGGGTTTGCGAG 61.423 66.667 0.00 0.00 39.65 5.03
764 766 1.079127 CGACTCATTTCCGGCCAGT 60.079 57.895 2.24 0.00 0.00 4.00
766 768 2.267642 CCGACTCATTTCCGGCCA 59.732 61.111 2.24 0.00 36.62 5.36
783 793 0.658897 TTGTCCTTTTTGTCCGACGC 59.341 50.000 0.00 0.00 0.00 5.19
786 796 3.118334 TGGTAGTTGTCCTTTTTGTCCGA 60.118 43.478 0.00 0.00 0.00 4.55
844 1141 0.546598 GGTGGTGGATTACTGAGGGG 59.453 60.000 0.00 0.00 0.00 4.79
846 1143 0.902531 ACGGTGGTGGATTACTGAGG 59.097 55.000 0.00 0.00 0.00 3.86
847 1144 2.007049 GCACGGTGGTGGATTACTGAG 61.007 57.143 10.60 0.00 44.54 3.35
851 1174 0.743345 GGAGCACGGTGGTGGATTAC 60.743 60.000 18.66 1.65 44.54 1.89
1008 1331 2.024871 GACGGCGAGGACTCATCG 59.975 66.667 16.62 8.73 43.00 3.84
1036 1359 0.461163 GAAAGAGAAGAGGGCGAGGC 60.461 60.000 0.00 0.00 0.00 4.70
1047 1370 4.840680 TCAATGGAGTCAGAGGAAAGAGAA 59.159 41.667 0.00 0.00 0.00 2.87
1077 1400 1.125093 TCCTCAGGAACGGCAGGAAA 61.125 55.000 0.00 0.00 30.53 3.13
1181 1519 4.893601 TTGTCGGTGCCGCGAACA 62.894 61.111 8.23 1.70 39.59 3.18
1869 2207 2.817834 CCATGGCCGGTGTACACG 60.818 66.667 19.41 14.08 0.00 4.49
2016 2354 4.232091 AGAAGTAGACCTTTCCAACAGGA 58.768 43.478 0.00 0.00 35.14 3.86
2208 2546 6.016777 CCATGGAAATATCAAAGCTCAGGTAC 60.017 42.308 5.56 0.00 0.00 3.34
2335 2673 2.629617 CCACAGCAAACTTCCCTTGAAT 59.370 45.455 0.00 0.00 0.00 2.57
2354 2692 3.814906 CACACCCACCACCACCCA 61.815 66.667 0.00 0.00 0.00 4.51
3085 3423 0.394565 GCAGCAATCTCCCCGACTAT 59.605 55.000 0.00 0.00 0.00 2.12
3086 3424 0.687757 AGCAGCAATCTCCCCGACTA 60.688 55.000 0.00 0.00 0.00 2.59
3087 3425 0.687757 TAGCAGCAATCTCCCCGACT 60.688 55.000 0.00 0.00 0.00 4.18
3088 3426 0.249657 CTAGCAGCAATCTCCCCGAC 60.250 60.000 0.00 0.00 0.00 4.79
3089 3427 0.397114 TCTAGCAGCAATCTCCCCGA 60.397 55.000 0.00 0.00 0.00 5.14
3090 3428 0.465705 TTCTAGCAGCAATCTCCCCG 59.534 55.000 0.00 0.00 0.00 5.73
3091 3429 1.488393 ACTTCTAGCAGCAATCTCCCC 59.512 52.381 0.00 0.00 0.00 4.81
3135 3474 6.206634 TCAAGACTACAAAATTACAGCAAGGG 59.793 38.462 0.00 0.00 0.00 3.95
3150 3489 5.483685 ACCATGTAAAGCTCAAGACTACA 57.516 39.130 0.00 0.00 0.00 2.74
3247 3586 8.089115 AGGAAGTTAAGAAACAGAGAAAATCG 57.911 34.615 0.00 0.00 38.12 3.34
3368 3710 7.090808 GGGCAATTGTTAGGAAGAAAACTAAG 58.909 38.462 7.40 0.00 30.45 2.18
3389 3731 3.513909 ATATTGCTAGCTTGATGGGCA 57.486 42.857 17.23 0.00 0.00 5.36
3466 3808 2.005451 CATATGGCGGCTCAGCTATTC 58.995 52.381 11.43 0.00 39.14 1.75
3571 3914 7.988737 TGAATGTGTCAAGAATAATCCATGTC 58.011 34.615 0.00 0.00 31.51 3.06
3900 4246 8.236643 ACTGGGGGAGTAGTATATGTAATGTAA 58.763 37.037 0.00 0.00 30.86 2.41
3901 4247 7.772686 ACTGGGGGAGTAGTATATGTAATGTA 58.227 38.462 0.00 0.00 30.86 2.29
3902 4248 6.631107 ACTGGGGGAGTAGTATATGTAATGT 58.369 40.000 0.00 0.00 30.86 2.71
3903 4249 7.894364 AGTACTGGGGGAGTAGTATATGTAATG 59.106 40.741 0.00 0.00 38.81 1.90
3904 4250 8.009242 AGTACTGGGGGAGTAGTATATGTAAT 57.991 38.462 0.00 0.00 38.81 1.89
3922 4268 7.534085 TTAATTGTCGCAGATTTAGTACTGG 57.466 36.000 5.39 0.00 40.67 4.00
3960 4306 6.600882 TCAACAAAGGGAGTTAGGTACTAG 57.399 41.667 0.00 0.00 44.25 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.