Multiple sequence alignment - TraesCS2A01G234900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G234900 chr2A 100.000 3407 0 0 1 3407 288990089 288986683 0.000000e+00 6292.0
1 TraesCS2A01G234900 chr2A 94.389 303 15 1 2810 3110 43004226 43004528 6.660000e-127 464.0
2 TraesCS2A01G234900 chr2A 94.079 304 16 1 2810 3111 42930534 42930837 8.610000e-126 460.0
3 TraesCS2A01G234900 chr2A 94.079 304 16 1 2810 3111 42960548 42960851 8.610000e-126 460.0
4 TraesCS2A01G234900 chr2D 94.402 2858 90 25 2 2814 248779288 248776456 0.000000e+00 4327.0
5 TraesCS2A01G234900 chr2D 93.725 255 16 0 3108 3362 248776476 248776222 1.920000e-102 383.0
6 TraesCS2A01G234900 chr6B 87.446 932 93 13 1892 2805 61493229 61494154 0.000000e+00 1051.0
7 TraesCS2A01G234900 chr6B 92.453 318 21 2 2799 3114 705634290 705633974 5.180000e-123 451.0
8 TraesCS2A01G234900 chr6D 87.248 941 90 17 1885 2808 28701324 28700397 0.000000e+00 1046.0
9 TraesCS2A01G234900 chr6D 83.768 844 96 20 2 831 412007387 412008203 0.000000e+00 761.0
10 TraesCS2A01G234900 chr4D 84.489 851 94 26 2 832 308815034 308815866 0.000000e+00 806.0
11 TraesCS2A01G234900 chr4D 82.932 873 98 26 2 838 40220208 40221065 0.000000e+00 739.0
12 TraesCS2A01G234900 chr4D 82.549 871 95 29 2 832 309926793 309927646 0.000000e+00 713.0
13 TraesCS2A01G234900 chr7D 83.841 854 102 26 2 838 595031001 595030167 0.000000e+00 780.0
14 TraesCS2A01G234900 chr7D 83.643 269 40 4 311 578 88714807 88714542 2.030000e-62 250.0
15 TraesCS2A01G234900 chr1A 83.531 844 111 17 2 829 251008057 251008888 0.000000e+00 763.0
16 TraesCS2A01G234900 chr1A 85.390 397 45 6 2425 2808 17885222 17884826 1.900000e-107 399.0
17 TraesCS2A01G234900 chr5B 83.470 853 103 27 2 839 330005494 330004665 0.000000e+00 760.0
18 TraesCS2A01G234900 chr5B 81.807 841 100 24 24 828 129347963 129348786 0.000000e+00 656.0
19 TraesCS2A01G234900 chr5B 93.464 306 18 1 2809 3112 674376776 674376471 1.440000e-123 453.0
20 TraesCS2A01G234900 chr7B 83.276 867 98 27 2 833 651202439 651201585 0.000000e+00 754.0
21 TraesCS2A01G234900 chr3D 83.238 877 92 33 2 839 435486636 435485776 0.000000e+00 754.0
22 TraesCS2A01G234900 chr3D 82.550 894 89 39 2 846 591197815 591196940 0.000000e+00 725.0
23 TraesCS2A01G234900 chr4B 83.314 851 97 31 2 832 348949070 348949895 0.000000e+00 743.0
24 TraesCS2A01G234900 chr4B 93.770 305 16 2 2810 3111 40215532 40215228 4.010000e-124 455.0
25 TraesCS2A01G234900 chr4A 82.854 869 95 33 2 832 164710783 164709931 0.000000e+00 730.0
26 TraesCS2A01G234900 chr4A 93.791 306 16 2 2809 3111 703252786 703253091 1.110000e-124 457.0
27 TraesCS2A01G234900 chr4A 85.442 419 46 11 2 408 384394361 384393946 4.060000e-114 422.0
28 TraesCS2A01G234900 chr6A 82.428 865 95 31 2 828 127089780 127090625 0.000000e+00 702.0
29 TraesCS2A01G234900 chr6A 92.675 314 19 3 2809 3119 584038748 584038436 1.860000e-122 449.0
30 TraesCS2A01G234900 chr6A 82.154 325 42 12 520 841 616219660 616219971 7.250000e-67 265.0
31 TraesCS2A01G234900 chr3B 81.861 849 119 26 2 832 821667141 821666310 0.000000e+00 682.0
32 TraesCS2A01G234900 chr3B 81.623 838 106 33 2 830 41475566 41476364 0.000000e+00 651.0
33 TraesCS2A01G234900 chr3B 86.181 398 41 10 2425 2808 735003778 735003381 5.260000e-113 418.0
34 TraesCS2A01G234900 chr3B 86.919 344 37 6 2425 2761 735004598 735004256 2.480000e-101 379.0
35 TraesCS2A01G234900 chr7A 83.840 625 72 17 217 828 671464219 671463611 4.930000e-158 568.0
36 TraesCS2A01G234900 chr7A 93.770 305 17 1 2809 3111 8660472 8660168 1.110000e-124 457.0
37 TraesCS2A01G234900 chr2B 83.617 470 62 10 2 459 764818456 764817990 8.740000e-116 427.0
38 TraesCS2A01G234900 chr5D 86.146 397 42 6 2425 2808 539743491 539743095 1.890000e-112 416.0
39 TraesCS2A01G234900 chr3A 85.861 389 42 6 2433 2808 94173872 94173484 5.300000e-108 401.0
40 TraesCS2A01G234900 chr3A 100.000 32 0 0 3376 3407 707759525 707759494 3.670000e-05 60.2
41 TraesCS2A01G234900 chr3A 100.000 32 0 0 3376 3407 707820295 707820264 3.670000e-05 60.2
42 TraesCS2A01G234900 chr5A 87.356 261 22 6 3119 3369 11556921 11557180 4.300000e-74 289.0
43 TraesCS2A01G234900 chr1B 83.004 253 18 9 3124 3362 184927860 184927619 4.460000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G234900 chr2A 288986683 288990089 3406 True 6292.0 6292 100.0000 1 3407 1 chr2A.!!$R1 3406
1 TraesCS2A01G234900 chr2D 248776222 248779288 3066 True 2355.0 4327 94.0635 2 3362 2 chr2D.!!$R1 3360
2 TraesCS2A01G234900 chr6B 61493229 61494154 925 False 1051.0 1051 87.4460 1892 2805 1 chr6B.!!$F1 913
3 TraesCS2A01G234900 chr6D 28700397 28701324 927 True 1046.0 1046 87.2480 1885 2808 1 chr6D.!!$R1 923
4 TraesCS2A01G234900 chr6D 412007387 412008203 816 False 761.0 761 83.7680 2 831 1 chr6D.!!$F1 829
5 TraesCS2A01G234900 chr4D 308815034 308815866 832 False 806.0 806 84.4890 2 832 1 chr4D.!!$F2 830
6 TraesCS2A01G234900 chr4D 40220208 40221065 857 False 739.0 739 82.9320 2 838 1 chr4D.!!$F1 836
7 TraesCS2A01G234900 chr4D 309926793 309927646 853 False 713.0 713 82.5490 2 832 1 chr4D.!!$F3 830
8 TraesCS2A01G234900 chr7D 595030167 595031001 834 True 780.0 780 83.8410 2 838 1 chr7D.!!$R2 836
9 TraesCS2A01G234900 chr1A 251008057 251008888 831 False 763.0 763 83.5310 2 829 1 chr1A.!!$F1 827
10 TraesCS2A01G234900 chr5B 330004665 330005494 829 True 760.0 760 83.4700 2 839 1 chr5B.!!$R1 837
11 TraesCS2A01G234900 chr5B 129347963 129348786 823 False 656.0 656 81.8070 24 828 1 chr5B.!!$F1 804
12 TraesCS2A01G234900 chr7B 651201585 651202439 854 True 754.0 754 83.2760 2 833 1 chr7B.!!$R1 831
13 TraesCS2A01G234900 chr3D 435485776 435486636 860 True 754.0 754 83.2380 2 839 1 chr3D.!!$R1 837
14 TraesCS2A01G234900 chr3D 591196940 591197815 875 True 725.0 725 82.5500 2 846 1 chr3D.!!$R2 844
15 TraesCS2A01G234900 chr4B 348949070 348949895 825 False 743.0 743 83.3140 2 832 1 chr4B.!!$F1 830
16 TraesCS2A01G234900 chr4A 164709931 164710783 852 True 730.0 730 82.8540 2 832 1 chr4A.!!$R1 830
17 TraesCS2A01G234900 chr6A 127089780 127090625 845 False 702.0 702 82.4280 2 828 1 chr6A.!!$F1 826
18 TraesCS2A01G234900 chr3B 821666310 821667141 831 True 682.0 682 81.8610 2 832 1 chr3B.!!$R1 830
19 TraesCS2A01G234900 chr3B 41475566 41476364 798 False 651.0 651 81.6230 2 830 1 chr3B.!!$F1 828
20 TraesCS2A01G234900 chr3B 735003381 735004598 1217 True 398.5 418 86.5500 2425 2808 2 chr3B.!!$R2 383
21 TraesCS2A01G234900 chr7A 671463611 671464219 608 True 568.0 568 83.8400 217 828 1 chr7A.!!$R2 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1162 1.227089 CCCATCCTCAACGAGCTCG 60.227 63.158 33.45 33.45 46.33 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2869 3925 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.0 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
500 645 8.270744 ACAATGGTAGCTTCAAATCTAGAAGAT 58.729 33.333 7.08 3.24 44.00 2.40
501 646 9.118300 CAATGGTAGCTTCAAATCTAGAAGATT 57.882 33.333 7.08 0.00 46.22 2.40
582 741 8.891141 GTGTAACATCATGGCAACTTTTGGCT 62.891 42.308 12.98 0.00 46.78 4.75
609 773 6.961359 AAAGAATGTCGTCGAAACATATCA 57.039 33.333 13.40 0.00 36.35 2.15
610 774 6.961359 AAGAATGTCGTCGAAACATATCAA 57.039 33.333 13.40 0.00 36.35 2.57
611 775 7.539712 AAGAATGTCGTCGAAACATATCAAT 57.460 32.000 13.40 0.45 36.35 2.57
612 776 6.937457 AGAATGTCGTCGAAACATATCAATG 58.063 36.000 13.40 0.00 36.35 2.82
614 778 5.696260 TGTCGTCGAAACATATCAATGTC 57.304 39.130 0.00 0.00 45.79 3.06
615 779 4.264380 TGTCGTCGAAACATATCAATGTCG 59.736 41.667 0.00 0.00 45.79 4.35
886 1070 2.957402 TGGAGATGGTGTTTTCTGCT 57.043 45.000 0.00 0.00 32.16 4.24
897 1081 4.327087 GGTGTTTTCTGCTTTTCTGTGTTG 59.673 41.667 0.00 0.00 0.00 3.33
940 1124 3.134127 GCAACCCCCGCACATCTC 61.134 66.667 0.00 0.00 0.00 2.75
978 1162 1.227089 CCCATCCTCAACGAGCTCG 60.227 63.158 33.45 33.45 46.33 5.03
1188 1372 1.210478 CAGAGTGGTATGGTTCTGGGG 59.790 57.143 0.00 0.00 34.76 4.96
1463 1647 6.833416 TGTTTGTAGGGATATTTGGAAGATGG 59.167 38.462 0.00 0.00 0.00 3.51
1464 1648 5.582950 TGTAGGGATATTTGGAAGATGGG 57.417 43.478 0.00 0.00 0.00 4.00
1530 1715 7.147312 TGGAGCATGAAAGATGTTTTTAGTTG 58.853 34.615 0.00 0.00 0.00 3.16
1704 1889 4.243270 ACATGTTACTACGAAGGAGCAAC 58.757 43.478 0.00 0.00 29.58 4.17
1803 2016 0.377905 TCGAATGCCATGATGTTGCG 59.622 50.000 0.00 0.00 0.00 4.85
1900 2113 1.841450 CCGTAGCGAGGTTCAGATTC 58.159 55.000 0.00 0.00 0.00 2.52
2216 2429 5.369409 AAGCTGAGATTGAATGAGGATGA 57.631 39.130 0.00 0.00 0.00 2.92
2431 2648 1.816074 TTGGGTCGGCTATTGTTGAC 58.184 50.000 0.00 0.00 0.00 3.18
2498 2715 8.940397 AAAAGGAGGAAATAATGTTCTTCTCA 57.060 30.769 0.00 0.00 34.81 3.27
2561 3604 2.294233 GGCTTGAAAGAGTCACATTGCA 59.706 45.455 0.00 0.00 35.39 4.08
2634 3680 5.913137 ATGACATTAATCTTTTTGGGCGA 57.087 34.783 0.00 0.00 0.00 5.54
2692 3738 3.594134 GGAGCCTGCATGTATATCAGAC 58.406 50.000 0.00 0.00 0.00 3.51
2793 3849 7.880160 TTATACGGCTTAGACTTACCTGTTA 57.120 36.000 0.00 0.00 0.00 2.41
2794 3850 6.780457 ATACGGCTTAGACTTACCTGTTAA 57.220 37.500 0.00 0.00 0.00 2.01
2795 3851 5.473066 ACGGCTTAGACTTACCTGTTAAA 57.527 39.130 0.00 0.00 0.00 1.52
2796 3852 5.857268 ACGGCTTAGACTTACCTGTTAAAA 58.143 37.500 0.00 0.00 0.00 1.52
2797 3853 5.930569 ACGGCTTAGACTTACCTGTTAAAAG 59.069 40.000 0.00 0.00 0.00 2.27
2798 3854 5.930569 CGGCTTAGACTTACCTGTTAAAAGT 59.069 40.000 0.00 0.00 36.20 2.66
2799 3855 6.426025 CGGCTTAGACTTACCTGTTAAAAGTT 59.574 38.462 0.00 0.00 33.72 2.66
2800 3856 7.041576 CGGCTTAGACTTACCTGTTAAAAGTTT 60.042 37.037 0.00 0.00 33.72 2.66
2801 3857 8.627403 GGCTTAGACTTACCTGTTAAAAGTTTT 58.373 33.333 6.06 6.06 33.72 2.43
2820 3876 1.770294 TTTTTCCTGCGAACCAACCT 58.230 45.000 0.00 0.00 0.00 3.50
2821 3877 2.642154 TTTTCCTGCGAACCAACCTA 57.358 45.000 0.00 0.00 0.00 3.08
2822 3878 2.871096 TTTCCTGCGAACCAACCTAT 57.129 45.000 0.00 0.00 0.00 2.57
2823 3879 2.107950 TTCCTGCGAACCAACCTATG 57.892 50.000 0.00 0.00 0.00 2.23
2838 3894 5.373812 AACCTATGGTTGAGATGGTTAGG 57.626 43.478 0.71 0.00 45.07 2.69
2839 3895 4.371681 ACCTATGGTTGAGATGGTTAGGT 58.628 43.478 0.00 0.00 34.55 3.08
2840 3896 4.164221 ACCTATGGTTGAGATGGTTAGGTG 59.836 45.833 0.00 0.00 37.24 4.00
2841 3897 3.652057 ATGGTTGAGATGGTTAGGTGG 57.348 47.619 0.00 0.00 0.00 4.61
2842 3898 2.626785 TGGTTGAGATGGTTAGGTGGA 58.373 47.619 0.00 0.00 0.00 4.02
2843 3899 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
2844 3900 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
2845 3901 3.600388 GTTGAGATGGTTAGGTGGACAG 58.400 50.000 0.00 0.00 0.00 3.51
2846 3902 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
2847 3903 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
2848 3904 2.832129 GAGATGGTTAGGTGGACAGTGA 59.168 50.000 0.00 0.00 0.00 3.41
2849 3905 3.452627 GAGATGGTTAGGTGGACAGTGAT 59.547 47.826 0.00 0.00 0.00 3.06
2850 3906 4.620723 AGATGGTTAGGTGGACAGTGATA 58.379 43.478 0.00 0.00 0.00 2.15
2851 3907 5.219739 AGATGGTTAGGTGGACAGTGATAT 58.780 41.667 0.00 0.00 0.00 1.63
2852 3908 5.305644 AGATGGTTAGGTGGACAGTGATATC 59.694 44.000 0.00 0.00 0.00 1.63
2853 3909 3.709653 TGGTTAGGTGGACAGTGATATCC 59.290 47.826 0.00 0.00 0.00 2.59
2854 3910 3.071167 GGTTAGGTGGACAGTGATATCCC 59.929 52.174 0.00 0.00 0.00 3.85
2855 3911 1.807814 AGGTGGACAGTGATATCCCC 58.192 55.000 0.00 0.00 0.00 4.81
2856 3912 1.009552 AGGTGGACAGTGATATCCCCA 59.990 52.381 0.00 0.00 0.00 4.96
2857 3913 1.843851 GGTGGACAGTGATATCCCCAA 59.156 52.381 0.00 0.00 0.00 4.12
2858 3914 2.421529 GGTGGACAGTGATATCCCCAAC 60.422 54.545 0.00 0.00 0.00 3.77
2859 3915 1.843851 TGGACAGTGATATCCCCAACC 59.156 52.381 0.00 0.00 0.00 3.77
2860 3916 1.143073 GGACAGTGATATCCCCAACCC 59.857 57.143 0.00 0.00 0.00 4.11
2861 3917 1.843851 GACAGTGATATCCCCAACCCA 59.156 52.381 0.00 0.00 0.00 4.51
2862 3918 2.443255 GACAGTGATATCCCCAACCCAT 59.557 50.000 0.00 0.00 0.00 4.00
2863 3919 2.443255 ACAGTGATATCCCCAACCCATC 59.557 50.000 0.00 0.00 0.00 3.51
2864 3920 2.442878 CAGTGATATCCCCAACCCATCA 59.557 50.000 0.00 0.00 0.00 3.07
2865 3921 2.713167 AGTGATATCCCCAACCCATCAG 59.287 50.000 0.00 0.00 0.00 2.90
2866 3922 2.065007 TGATATCCCCAACCCATCAGG 58.935 52.381 0.00 0.00 43.78 3.86
2882 3938 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
2883 3939 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
2884 3940 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
2885 3941 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
2886 3942 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
2887 3943 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
2888 3944 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
2889 3945 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
2890 3946 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
2891 3947 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
2892 3948 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
2893 3949 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
2894 3950 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
2895 3951 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
2896 3952 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
2897 3953 1.209261 TGGTGCTCGCATTATTCCTGA 59.791 47.619 0.00 0.00 0.00 3.86
2898 3954 2.288666 GGTGCTCGCATTATTCCTGAA 58.711 47.619 0.00 0.00 0.00 3.02
2899 3955 2.880890 GGTGCTCGCATTATTCCTGAAT 59.119 45.455 0.00 0.00 34.93 2.57
2900 3956 3.316308 GGTGCTCGCATTATTCCTGAATT 59.684 43.478 0.00 0.00 32.50 2.17
2901 3957 4.202050 GGTGCTCGCATTATTCCTGAATTT 60.202 41.667 0.00 0.00 32.50 1.82
2902 3958 5.008613 GGTGCTCGCATTATTCCTGAATTTA 59.991 40.000 0.00 0.00 32.50 1.40
2903 3959 6.294176 GGTGCTCGCATTATTCCTGAATTTAT 60.294 38.462 0.00 0.00 32.50 1.40
2904 3960 7.141363 GTGCTCGCATTATTCCTGAATTTATT 58.859 34.615 0.00 0.00 32.50 1.40
2905 3961 7.649306 GTGCTCGCATTATTCCTGAATTTATTT 59.351 33.333 0.00 0.00 32.50 1.40
2906 3962 7.862372 TGCTCGCATTATTCCTGAATTTATTTC 59.138 33.333 0.00 0.00 34.72 2.17
2907 3963 7.862372 GCTCGCATTATTCCTGAATTTATTTCA 59.138 33.333 0.00 0.00 42.09 2.69
2908 3964 9.734620 CTCGCATTATTCCTGAATTTATTTCAA 57.265 29.630 0.00 0.00 43.64 2.69
2909 3965 9.734620 TCGCATTATTCCTGAATTTATTTCAAG 57.265 29.630 0.00 0.00 43.64 3.02
2910 3966 9.734620 CGCATTATTCCTGAATTTATTTCAAGA 57.265 29.630 0.00 0.00 43.64 3.02
2917 3973 9.638239 TTCCTGAATTTATTTCAAGATTTTCGG 57.362 29.630 0.00 0.00 43.64 4.30
2918 3974 8.802267 TCCTGAATTTATTTCAAGATTTTCGGT 58.198 29.630 0.00 0.00 43.64 4.69
2919 3975 8.863049 CCTGAATTTATTTCAAGATTTTCGGTG 58.137 33.333 0.00 0.00 43.64 4.94
2920 3976 9.624697 CTGAATTTATTTCAAGATTTTCGGTGA 57.375 29.630 0.00 0.00 43.64 4.02
2923 3979 7.810766 TTTATTTCAAGATTTTCGGTGATGC 57.189 32.000 0.00 0.00 0.00 3.91
2924 3980 4.844998 TTTCAAGATTTTCGGTGATGCA 57.155 36.364 0.00 0.00 0.00 3.96
2925 3981 3.829886 TCAAGATTTTCGGTGATGCAC 57.170 42.857 0.00 0.00 0.00 4.57
2926 3982 3.411446 TCAAGATTTTCGGTGATGCACT 58.589 40.909 0.00 0.00 34.40 4.40
2927 3983 3.820467 TCAAGATTTTCGGTGATGCACTT 59.180 39.130 0.00 0.00 34.40 3.16
2928 3984 4.278170 TCAAGATTTTCGGTGATGCACTTT 59.722 37.500 0.00 0.00 34.40 2.66
2929 3985 4.425577 AGATTTTCGGTGATGCACTTTC 57.574 40.909 0.00 0.00 34.40 2.62
2930 3986 3.820467 AGATTTTCGGTGATGCACTTTCA 59.180 39.130 0.00 0.00 34.40 2.69
2931 3987 3.624326 TTTTCGGTGATGCACTTTCAG 57.376 42.857 0.00 0.00 34.40 3.02
2932 3988 2.254546 TTCGGTGATGCACTTTCAGT 57.745 45.000 0.00 0.00 34.40 3.41
2934 3990 0.518636 CGGTGATGCACTTTCAGTGG 59.481 55.000 6.05 0.00 46.01 4.00
2935 3991 0.883833 GGTGATGCACTTTCAGTGGG 59.116 55.000 6.05 0.00 46.01 4.61
2936 3992 1.545428 GGTGATGCACTTTCAGTGGGA 60.545 52.381 6.05 0.00 46.01 4.37
2937 3993 1.808945 GTGATGCACTTTCAGTGGGAG 59.191 52.381 6.05 0.00 46.01 4.30
2938 3994 1.271543 TGATGCACTTTCAGTGGGAGG 60.272 52.381 6.05 0.00 46.01 4.30
2939 3995 1.003580 GATGCACTTTCAGTGGGAGGA 59.996 52.381 6.05 0.00 46.01 3.71
2940 3996 0.397941 TGCACTTTCAGTGGGAGGAG 59.602 55.000 6.05 0.00 46.01 3.69
2941 3997 0.687354 GCACTTTCAGTGGGAGGAGA 59.313 55.000 6.05 0.00 46.01 3.71
2942 3998 1.609320 GCACTTTCAGTGGGAGGAGAC 60.609 57.143 6.05 0.00 46.01 3.36
2943 3999 0.969894 ACTTTCAGTGGGAGGAGACG 59.030 55.000 0.00 0.00 0.00 4.18
2944 4000 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
2945 4001 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
2946 4002 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
2969 4025 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
2972 4028 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
2974 4030 4.554363 CGAGGCGCCTACGGTGAG 62.554 72.222 32.97 10.97 40.57 3.51
2975 4031 3.450115 GAGGCGCCTACGGTGAGT 61.450 66.667 32.97 3.02 40.57 3.41
2976 4032 2.995574 AGGCGCCTACGGTGAGTT 60.996 61.111 31.86 0.00 40.57 3.01
2977 4033 2.508663 GGCGCCTACGGTGAGTTC 60.509 66.667 22.15 0.00 40.57 3.01
2978 4034 2.879462 GCGCCTACGGTGAGTTCG 60.879 66.667 0.00 0.00 40.57 3.95
2979 4035 2.564975 CGCCTACGGTGAGTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
2980 4036 1.796151 CGCCTACGGTGAGTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
2981 4037 0.168788 CGCCTACGGTGAGTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
2982 4038 1.401409 CGCCTACGGTGAGTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
2983 4039 2.733227 CGCCTACGGTGAGTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
2984 4040 3.256558 GCCTACGGTGAGTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
2985 4041 3.681417 GCCTACGGTGAGTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
2986 4042 4.201656 GCCTACGGTGAGTTCGTAAATTTC 60.202 45.833 0.00 0.00 41.62 2.17
2987 4043 4.925054 CCTACGGTGAGTTCGTAAATTTCA 59.075 41.667 0.00 0.00 41.62 2.69
2988 4044 5.406175 CCTACGGTGAGTTCGTAAATTTCAA 59.594 40.000 0.00 0.00 41.62 2.69
2989 4045 5.338614 ACGGTGAGTTCGTAAATTTCAAG 57.661 39.130 0.00 0.00 39.22 3.02
2990 4046 5.051816 ACGGTGAGTTCGTAAATTTCAAGA 58.948 37.500 0.00 0.00 39.22 3.02
2991 4047 5.699458 ACGGTGAGTTCGTAAATTTCAAGAT 59.301 36.000 0.00 0.00 39.22 2.40
2992 4048 6.015504 CGGTGAGTTCGTAAATTTCAAGATG 58.984 40.000 0.00 0.00 0.00 2.90
2993 4049 6.128661 CGGTGAGTTCGTAAATTTCAAGATGA 60.129 38.462 0.00 0.00 0.00 2.92
2994 4050 7.413000 CGGTGAGTTCGTAAATTTCAAGATGAT 60.413 37.037 0.00 0.00 0.00 2.45
2995 4051 8.879759 GGTGAGTTCGTAAATTTCAAGATGATA 58.120 33.333 0.00 0.00 0.00 2.15
2998 4054 9.374960 GAGTTCGTAAATTTCAAGATGATATGC 57.625 33.333 0.00 0.00 0.00 3.14
2999 4055 8.345565 AGTTCGTAAATTTCAAGATGATATGCC 58.654 33.333 0.00 0.00 0.00 4.40
3000 4056 6.887368 TCGTAAATTTCAAGATGATATGCCG 58.113 36.000 0.00 0.00 0.00 5.69
3001 4057 6.073276 TCGTAAATTTCAAGATGATATGCCGG 60.073 38.462 0.00 0.00 0.00 6.13
3002 4058 4.510038 AATTTCAAGATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
3003 4059 2.936919 TTCAAGATGATATGCCGGCT 57.063 45.000 29.70 15.76 0.00 5.52
3004 4060 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
3005 4061 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
3006 4062 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
3007 4063 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
3008 4064 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
3009 4065 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
3010 4066 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
3011 4067 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
3012 4068 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
3013 4069 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
3014 4070 3.134792 GCCGGCTCAGTCTCTCGA 61.135 66.667 22.15 0.00 0.00 4.04
3015 4071 2.701780 GCCGGCTCAGTCTCTCGAA 61.702 63.158 22.15 0.00 0.00 3.71
3016 4072 1.431440 CCGGCTCAGTCTCTCGAAG 59.569 63.158 0.00 0.00 0.00 3.79
3017 4073 1.431440 CGGCTCAGTCTCTCGAAGG 59.569 63.158 0.00 0.00 0.00 3.46
3018 4074 1.309499 CGGCTCAGTCTCTCGAAGGT 61.309 60.000 0.00 0.00 0.00 3.50
3019 4075 0.172352 GGCTCAGTCTCTCGAAGGTG 59.828 60.000 0.00 0.00 0.00 4.00
3020 4076 0.457681 GCTCAGTCTCTCGAAGGTGC 60.458 60.000 0.00 0.00 0.00 5.01
3021 4077 1.173043 CTCAGTCTCTCGAAGGTGCT 58.827 55.000 0.00 0.00 0.00 4.40
3022 4078 1.132262 CTCAGTCTCTCGAAGGTGCTC 59.868 57.143 0.00 0.00 0.00 4.26
3023 4079 0.884514 CAGTCTCTCGAAGGTGCTCA 59.115 55.000 0.00 0.00 0.00 4.26
3024 4080 1.476085 CAGTCTCTCGAAGGTGCTCAT 59.524 52.381 0.00 0.00 0.00 2.90
3025 4081 2.685388 CAGTCTCTCGAAGGTGCTCATA 59.315 50.000 0.00 0.00 0.00 2.15
3026 4082 2.948979 AGTCTCTCGAAGGTGCTCATAG 59.051 50.000 0.00 0.00 0.00 2.23
3027 4083 2.034053 GTCTCTCGAAGGTGCTCATAGG 59.966 54.545 0.00 0.00 0.00 2.57
3028 4084 1.339610 CTCTCGAAGGTGCTCATAGGG 59.660 57.143 0.00 0.00 0.00 3.53
3029 4085 1.063942 TCTCGAAGGTGCTCATAGGGA 60.064 52.381 0.00 0.00 0.00 4.20
3030 4086 1.967066 CTCGAAGGTGCTCATAGGGAT 59.033 52.381 0.00 0.00 0.00 3.85
3031 4087 3.157881 CTCGAAGGTGCTCATAGGGATA 58.842 50.000 0.00 0.00 0.00 2.59
3032 4088 3.157881 TCGAAGGTGCTCATAGGGATAG 58.842 50.000 0.00 0.00 0.00 2.08
3033 4089 2.232452 CGAAGGTGCTCATAGGGATAGG 59.768 54.545 0.00 0.00 0.00 2.57
3034 4090 2.334006 AGGTGCTCATAGGGATAGGG 57.666 55.000 0.00 0.00 0.00 3.53
3035 4091 1.509961 AGGTGCTCATAGGGATAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
3036 4092 1.625818 GGTGCTCATAGGGATAGGGTG 59.374 57.143 0.00 0.00 0.00 4.61
3037 4093 2.330216 GTGCTCATAGGGATAGGGTGT 58.670 52.381 0.00 0.00 0.00 4.16
3038 4094 2.037772 GTGCTCATAGGGATAGGGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
3039 4095 1.002544 GCTCATAGGGATAGGGTGTGC 59.997 57.143 0.00 0.00 0.00 4.57
3040 4096 1.273606 CTCATAGGGATAGGGTGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
3041 4097 1.048601 CATAGGGATAGGGTGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
3042 4098 1.048601 ATAGGGATAGGGTGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
3043 4099 0.324923 TAGGGATAGGGTGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
3044 4100 1.449601 GGGATAGGGTGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
3045 4101 1.295423 GGATAGGGTGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
3046 4102 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
3047 4103 0.320421 GATAGGGTGTGCGTGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
3048 4104 0.107831 ATAGGGTGTGCGTGTGTGTT 59.892 50.000 0.00 0.00 0.00 3.32
3049 4105 0.531090 TAGGGTGTGCGTGTGTGTTC 60.531 55.000 0.00 0.00 0.00 3.18
3050 4106 2.109739 GGGTGTGCGTGTGTGTTCA 61.110 57.895 0.00 0.00 0.00 3.18
3051 4107 1.444119 GGGTGTGCGTGTGTGTTCAT 61.444 55.000 0.00 0.00 0.00 2.57
3052 4108 1.222300 GGTGTGCGTGTGTGTTCATA 58.778 50.000 0.00 0.00 0.00 2.15
3053 4109 1.194547 GGTGTGCGTGTGTGTTCATAG 59.805 52.381 0.00 0.00 0.00 2.23
3054 4110 1.194547 GTGTGCGTGTGTGTTCATAGG 59.805 52.381 0.00 0.00 0.00 2.57
3055 4111 0.796312 GTGCGTGTGTGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
3056 4112 0.682292 TGCGTGTGTGTTCATAGGGA 59.318 50.000 0.00 0.00 0.00 4.20
3057 4113 1.277842 TGCGTGTGTGTTCATAGGGAT 59.722 47.619 0.00 0.00 0.00 3.85
3058 4114 1.665679 GCGTGTGTGTTCATAGGGATG 59.334 52.381 0.00 0.00 0.00 3.51
3059 4115 2.676750 GCGTGTGTGTTCATAGGGATGA 60.677 50.000 0.00 0.00 40.45 2.92
3060 4116 3.190079 CGTGTGTGTTCATAGGGATGAG 58.810 50.000 0.00 0.00 43.03 2.90
3061 4117 3.368427 CGTGTGTGTTCATAGGGATGAGT 60.368 47.826 0.00 0.00 43.03 3.41
3062 4118 3.935203 GTGTGTGTTCATAGGGATGAGTG 59.065 47.826 0.00 0.00 43.03 3.51
3063 4119 3.582647 TGTGTGTTCATAGGGATGAGTGT 59.417 43.478 0.00 0.00 43.03 3.55
3064 4120 4.775253 TGTGTGTTCATAGGGATGAGTGTA 59.225 41.667 0.00 0.00 43.03 2.90
3065 4121 5.425217 TGTGTGTTCATAGGGATGAGTGTAT 59.575 40.000 0.00 0.00 43.03 2.29
3066 4122 5.755375 GTGTGTTCATAGGGATGAGTGTATG 59.245 44.000 0.00 0.00 43.03 2.39
3067 4123 5.425217 TGTGTTCATAGGGATGAGTGTATGT 59.575 40.000 0.00 0.00 43.03 2.29
3068 4124 5.755375 GTGTTCATAGGGATGAGTGTATGTG 59.245 44.000 0.00 0.00 43.03 3.21
3069 4125 4.607293 TCATAGGGATGAGTGTATGTGC 57.393 45.455 0.00 0.00 37.15 4.57
3070 4126 3.005791 TCATAGGGATGAGTGTATGTGCG 59.994 47.826 0.00 0.00 37.15 5.34
3071 4127 1.195115 AGGGATGAGTGTATGTGCGT 58.805 50.000 0.00 0.00 0.00 5.24
3072 4128 1.134699 AGGGATGAGTGTATGTGCGTG 60.135 52.381 0.00 0.00 0.00 5.34
3073 4129 1.405526 GGGATGAGTGTATGTGCGTGT 60.406 52.381 0.00 0.00 0.00 4.49
3074 4130 2.159156 GGGATGAGTGTATGTGCGTGTA 60.159 50.000 0.00 0.00 0.00 2.90
3075 4131 2.858344 GGATGAGTGTATGTGCGTGTAC 59.142 50.000 0.00 0.00 0.00 2.90
3076 4132 3.507786 GATGAGTGTATGTGCGTGTACA 58.492 45.455 0.00 0.00 34.63 2.90
3077 4133 3.586100 TGAGTGTATGTGCGTGTACAT 57.414 42.857 8.59 8.59 43.34 2.29
3078 4134 3.249917 TGAGTGTATGTGCGTGTACATG 58.750 45.455 10.89 10.89 41.18 3.21
3079 4135 3.057174 TGAGTGTATGTGCGTGTACATGA 60.057 43.478 19.38 0.00 41.18 3.07
3080 4136 3.511699 AGTGTATGTGCGTGTACATGAG 58.488 45.455 19.38 5.48 41.18 2.90
3081 4137 2.029244 GTGTATGTGCGTGTACATGAGC 59.971 50.000 19.38 15.26 41.18 4.26
3082 4138 1.255342 GTATGTGCGTGTACATGAGCG 59.745 52.381 19.38 9.19 41.18 5.03
3085 4141 3.474806 GCGTGTACATGAGCGCTT 58.525 55.556 19.38 0.00 45.48 4.68
3086 4142 1.059369 GCGTGTACATGAGCGCTTG 59.941 57.895 19.38 9.93 45.48 4.01
3087 4143 1.626654 GCGTGTACATGAGCGCTTGT 61.627 55.000 19.38 18.09 45.48 3.16
3088 4144 0.093535 CGTGTACATGAGCGCTTGTG 59.906 55.000 22.01 19.92 34.61 3.33
3089 4145 1.148310 GTGTACATGAGCGCTTGTGT 58.852 50.000 25.24 25.24 34.61 3.72
3090 4146 1.126846 GTGTACATGAGCGCTTGTGTC 59.873 52.381 25.53 17.38 34.61 3.67
3091 4147 1.000843 TGTACATGAGCGCTTGTGTCT 59.999 47.619 25.53 10.42 34.61 3.41
3092 4148 1.391485 GTACATGAGCGCTTGTGTCTG 59.609 52.381 25.53 13.69 34.61 3.51
3093 4149 0.250038 ACATGAGCGCTTGTGTCTGT 60.250 50.000 13.26 6.50 31.88 3.41
3094 4150 1.000843 ACATGAGCGCTTGTGTCTGTA 59.999 47.619 13.26 0.00 31.88 2.74
3095 4151 1.391485 CATGAGCGCTTGTGTCTGTAC 59.609 52.381 13.26 0.00 0.00 2.90
3096 4152 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
3097 4153 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
3098 4154 0.319900 AGCGCTTGTGTCTGTACTGG 60.320 55.000 2.64 0.00 0.00 4.00
3099 4155 0.600255 GCGCTTGTGTCTGTACTGGT 60.600 55.000 0.00 0.00 0.00 4.00
3100 4156 1.139989 CGCTTGTGTCTGTACTGGTG 58.860 55.000 0.00 0.00 0.00 4.17
3101 4157 0.868406 GCTTGTGTCTGTACTGGTGC 59.132 55.000 0.00 0.00 0.00 5.01
3102 4158 1.541233 GCTTGTGTCTGTACTGGTGCT 60.541 52.381 0.00 0.00 0.00 4.40
3103 4159 2.288825 GCTTGTGTCTGTACTGGTGCTA 60.289 50.000 0.00 0.00 0.00 3.49
3104 4160 3.802329 GCTTGTGTCTGTACTGGTGCTAA 60.802 47.826 0.00 0.00 0.00 3.09
3105 4161 4.377021 CTTGTGTCTGTACTGGTGCTAAA 58.623 43.478 0.00 0.00 0.00 1.85
3106 4162 4.409718 TGTGTCTGTACTGGTGCTAAAA 57.590 40.909 0.00 0.00 0.00 1.52
3132 4188 6.609237 AAGCTCTTTTTCTTCCAAAAATGC 57.391 33.333 0.00 8.43 33.18 3.56
3143 4199 6.426587 TCTTCCAAAAATGCCTAATAGAGCT 58.573 36.000 0.00 0.00 0.00 4.09
3168 4224 2.748605 CTACCTGGCGCTCTTTATCTG 58.251 52.381 7.64 0.00 0.00 2.90
3196 4252 1.599047 CCTTCAGCTGGATCCGTGT 59.401 57.895 15.13 0.00 0.00 4.49
3210 4266 0.095245 CCGTGTCAGCAGCGTATTTG 59.905 55.000 0.00 0.00 0.00 2.32
3224 4280 3.861113 GCGTATTTGTCTCACGTATTCCA 59.139 43.478 0.00 0.00 37.95 3.53
3239 4295 4.034626 CGTATTCCACGTGGCATCATTTTA 59.965 41.667 30.25 5.30 45.82 1.52
3269 4325 6.017109 GCTCCGTATTCCATTGTTATCAACAT 60.017 38.462 0.00 0.00 41.79 2.71
3292 4348 0.975887 TATCCCAGCTCGCATGCATA 59.024 50.000 19.57 3.82 34.99 3.14
3304 4360 1.670295 GCATGCATATGAACACGTCCA 59.330 47.619 14.21 0.00 36.36 4.02
3352 4408 1.514087 CCCAGTCAATGCACATGCC 59.486 57.895 0.49 0.00 41.18 4.40
3362 4418 2.442212 TGCACATGCCTTGTCAAATG 57.558 45.000 0.49 0.00 41.18 2.32
3363 4419 1.001068 TGCACATGCCTTGTCAAATGG 59.999 47.619 0.49 0.00 41.18 3.16
3364 4420 1.001181 GCACATGCCTTGTCAAATGGT 59.999 47.619 0.00 0.00 36.00 3.55
3365 4421 2.230992 GCACATGCCTTGTCAAATGGTA 59.769 45.455 0.00 0.00 36.00 3.25
3366 4422 3.305950 GCACATGCCTTGTCAAATGGTAA 60.306 43.478 0.00 0.00 36.00 2.85
3367 4423 4.798924 GCACATGCCTTGTCAAATGGTAAA 60.799 41.667 0.00 0.00 36.00 2.01
3368 4424 4.685628 CACATGCCTTGTCAAATGGTAAAC 59.314 41.667 0.00 0.00 36.00 2.01
3369 4425 3.634568 TGCCTTGTCAAATGGTAAACG 57.365 42.857 0.00 0.00 0.00 3.60
3370 4426 2.952978 TGCCTTGTCAAATGGTAAACGT 59.047 40.909 0.00 0.00 0.00 3.99
3371 4427 3.381908 TGCCTTGTCAAATGGTAAACGTT 59.618 39.130 0.00 0.00 0.00 3.99
3372 4428 4.142138 TGCCTTGTCAAATGGTAAACGTTT 60.142 37.500 18.90 18.90 38.82 3.60
3373 4429 4.443063 GCCTTGTCAAATGGTAAACGTTTC 59.557 41.667 18.42 9.19 36.17 2.78
3374 4430 5.583495 CCTTGTCAAATGGTAAACGTTTCA 58.417 37.500 18.42 10.90 36.17 2.69
3375 4431 5.685511 CCTTGTCAAATGGTAAACGTTTCAG 59.314 40.000 18.42 0.00 36.17 3.02
3376 4432 5.176407 TGTCAAATGGTAAACGTTTCAGG 57.824 39.130 18.42 4.91 36.17 3.86
3377 4433 3.978855 GTCAAATGGTAAACGTTTCAGGC 59.021 43.478 18.42 6.54 36.17 4.85
3378 4434 3.004944 TCAAATGGTAAACGTTTCAGGCC 59.995 43.478 18.42 15.29 36.17 5.19
3379 4435 1.161843 ATGGTAAACGTTTCAGGCCG 58.838 50.000 18.42 0.00 0.00 6.13
3380 4436 0.106335 TGGTAAACGTTTCAGGCCGA 59.894 50.000 18.42 0.00 0.00 5.54
3381 4437 1.228533 GGTAAACGTTTCAGGCCGAA 58.771 50.000 18.42 0.83 0.00 4.30
3382 4438 1.196127 GGTAAACGTTTCAGGCCGAAG 59.804 52.381 18.42 0.00 34.32 3.79
3383 4439 0.869730 TAAACGTTTCAGGCCGAAGC 59.130 50.000 18.42 11.99 34.32 3.86
3386 4442 3.050275 GTTTCAGGCCGAAGCGCT 61.050 61.111 2.64 2.64 41.24 5.92
3387 4443 2.742372 TTTCAGGCCGAAGCGCTC 60.742 61.111 12.06 3.22 41.24 5.03
3388 4444 4.760047 TTCAGGCCGAAGCGCTCC 62.760 66.667 12.06 7.75 41.24 4.70
3402 4458 3.382832 CTCCACCGGTTCGCTCCT 61.383 66.667 2.97 0.00 0.00 3.69
3403 4459 3.649277 CTCCACCGGTTCGCTCCTG 62.649 68.421 2.97 0.00 0.00 3.86
3405 4461 4.379243 CACCGGTTCGCTCCTGCT 62.379 66.667 2.97 0.00 36.97 4.24
3406 4462 4.379243 ACCGGTTCGCTCCTGCTG 62.379 66.667 0.00 0.00 36.97 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.437862 ACTTTAGTGTAACAACATGGCAATTTG 59.562 33.333 9.27 9.27 41.43 2.32
108 115 9.434420 CAAATTTTAGTAATTCTCCATGGCAAA 57.566 29.630 6.96 3.79 0.00 3.68
582 741 3.872182 TGTTTCGACGACATTCTTTTGGA 59.128 39.130 0.00 0.00 0.00 3.53
584 747 7.233689 TGATATGTTTCGACGACATTCTTTTG 58.766 34.615 16.21 0.00 38.58 2.44
590 754 6.507929 CGACATTGATATGTTTCGACGACATT 60.508 38.462 16.21 7.04 44.90 2.71
591 755 5.051708 CGACATTGATATGTTTCGACGACAT 60.052 40.000 15.53 15.53 44.90 3.06
592 756 4.264380 CGACATTGATATGTTTCGACGACA 59.736 41.667 0.00 3.54 44.90 4.35
614 778 7.278211 TCTTCAAAACTAGATTCGACATTCG 57.722 36.000 0.00 0.00 42.10 3.34
615 779 9.092876 AGATCTTCAAAACTAGATTCGACATTC 57.907 33.333 0.00 0.00 0.00 2.67
712 892 7.040062 TCAGACTTTCTTTTGGTTTTTCAGACA 60.040 33.333 0.00 0.00 0.00 3.41
886 1070 6.403866 ACCATCATAAAGCAACACAGAAAA 57.596 33.333 0.00 0.00 0.00 2.29
897 1081 4.024556 CCTGACGATCAACCATCATAAAGC 60.025 45.833 0.00 0.00 0.00 3.51
940 1124 3.086600 GCTGGTGGAGGAGGGAGG 61.087 72.222 0.00 0.00 0.00 4.30
1188 1372 4.459089 GTGGAGCCTGTCCCGAGC 62.459 72.222 0.00 0.00 46.31 5.03
1394 1578 5.586243 GCATAGTGGTAAAGAAGCAATGAGA 59.414 40.000 0.00 0.00 37.33 3.27
1440 1624 6.161348 TCCCATCTTCCAAATATCCCTACAAA 59.839 38.462 0.00 0.00 0.00 2.83
1530 1715 8.777865 TTATCATCTTCCAAATATCGTCCATC 57.222 34.615 0.00 0.00 0.00 3.51
1704 1889 6.801539 ACGGCATACATACAAGATAAATGG 57.198 37.500 0.00 0.00 0.00 3.16
1803 2016 6.127647 TGTGATTGACCATTCATTTTAGCTCC 60.128 38.462 0.00 0.00 0.00 4.70
1865 2078 1.587066 ACGGCAACCCCTCCTAATAA 58.413 50.000 0.00 0.00 0.00 1.40
1866 2079 2.322658 CTACGGCAACCCCTCCTAATA 58.677 52.381 0.00 0.00 0.00 0.98
1867 2080 1.129058 CTACGGCAACCCCTCCTAAT 58.871 55.000 0.00 0.00 0.00 1.73
1879 2092 1.320344 ATCTGAACCTCGCTACGGCA 61.320 55.000 0.00 0.00 38.60 5.69
1882 2095 2.541999 GGAGAATCTGAACCTCGCTACG 60.542 54.545 0.00 0.00 33.73 3.51
1900 2113 7.445402 TGGTTCTTAGAAAACAATGAAGAGGAG 59.555 37.037 0.00 0.00 0.00 3.69
1958 2171 7.682787 AGATCTGGATCAACCTGTTTATAGT 57.317 36.000 12.34 0.00 40.22 2.12
1965 2178 4.785376 AGGTTAAGATCTGGATCAACCTGT 59.215 41.667 23.05 9.75 43.08 4.00
2216 2429 4.041691 AGTTGTCAGTAACATAGGGCTTGT 59.958 41.667 0.00 0.00 37.82 3.16
2311 2524 2.952310 GCTCAACAACTCCTTCCAAAGT 59.048 45.455 0.00 0.00 0.00 2.66
2423 2640 5.209240 CCGTAAATTCAACACGTCAACAAT 58.791 37.500 0.00 0.00 33.93 2.71
2431 2648 5.740099 AGTGAAAAACCGTAAATTCAACACG 59.260 36.000 0.00 0.00 33.93 4.49
2634 3680 8.562892 CAAAGTGTTGTTCTAGAAGATGATTGT 58.437 33.333 5.12 0.00 0.00 2.71
2692 3738 4.696877 TGTGGTGAGCTGTATTCTGAATTG 59.303 41.667 8.38 1.41 0.00 2.32
2771 3821 6.780457 TTAACAGGTAAGTCTAAGCCGTAT 57.220 37.500 0.00 0.00 0.00 3.06
2801 3857 1.770294 AGGTTGGTTCGCAGGAAAAA 58.230 45.000 0.00 0.00 33.05 1.94
2802 3858 2.642154 TAGGTTGGTTCGCAGGAAAA 57.358 45.000 0.00 0.00 33.05 2.29
2803 3859 2.432444 CATAGGTTGGTTCGCAGGAAA 58.568 47.619 0.00 0.00 33.05 3.13
2804 3860 1.339631 CCATAGGTTGGTTCGCAGGAA 60.340 52.381 0.00 0.00 40.99 3.36
2805 3861 0.251916 CCATAGGTTGGTTCGCAGGA 59.748 55.000 0.00 0.00 40.99 3.86
2806 3862 2.780595 CCATAGGTTGGTTCGCAGG 58.219 57.895 0.00 0.00 40.99 4.85
2817 3873 4.164221 CACCTAACCATCTCAACCATAGGT 59.836 45.833 0.00 0.00 41.66 3.08
2818 3874 4.444876 CCACCTAACCATCTCAACCATAGG 60.445 50.000 0.00 0.00 35.62 2.57
2819 3875 4.408921 TCCACCTAACCATCTCAACCATAG 59.591 45.833 0.00 0.00 0.00 2.23
2820 3876 4.163458 GTCCACCTAACCATCTCAACCATA 59.837 45.833 0.00 0.00 0.00 2.74
2821 3877 3.054361 GTCCACCTAACCATCTCAACCAT 60.054 47.826 0.00 0.00 0.00 3.55
2822 3878 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
2823 3879 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
2824 3880 3.008049 ACTGTCCACCTAACCATCTCAAC 59.992 47.826 0.00 0.00 0.00 3.18
2825 3881 3.007940 CACTGTCCACCTAACCATCTCAA 59.992 47.826 0.00 0.00 0.00 3.02
2826 3882 2.567169 CACTGTCCACCTAACCATCTCA 59.433 50.000 0.00 0.00 0.00 3.27
2827 3883 2.832129 TCACTGTCCACCTAACCATCTC 59.168 50.000 0.00 0.00 0.00 2.75
2828 3884 2.902608 TCACTGTCCACCTAACCATCT 58.097 47.619 0.00 0.00 0.00 2.90
2829 3885 3.914426 ATCACTGTCCACCTAACCATC 57.086 47.619 0.00 0.00 0.00 3.51
2830 3886 4.348168 GGATATCACTGTCCACCTAACCAT 59.652 45.833 4.83 0.00 33.05 3.55
2831 3887 3.709653 GGATATCACTGTCCACCTAACCA 59.290 47.826 4.83 0.00 33.05 3.67
2832 3888 3.071167 GGGATATCACTGTCCACCTAACC 59.929 52.174 4.83 0.00 34.44 2.85
2833 3889 3.071167 GGGGATATCACTGTCCACCTAAC 59.929 52.174 4.65 0.00 34.44 2.34
2834 3890 3.311028 TGGGGATATCACTGTCCACCTAA 60.311 47.826 4.65 0.00 35.25 2.69
2835 3891 2.248950 TGGGGATATCACTGTCCACCTA 59.751 50.000 4.65 0.00 35.25 3.08
2836 3892 1.009552 TGGGGATATCACTGTCCACCT 59.990 52.381 4.65 0.00 35.25 4.00
2837 3893 1.507140 TGGGGATATCACTGTCCACC 58.493 55.000 4.65 0.00 35.25 4.61
2838 3894 2.421529 GGTTGGGGATATCACTGTCCAC 60.422 54.545 4.65 0.00 36.63 4.02
2839 3895 1.843851 GGTTGGGGATATCACTGTCCA 59.156 52.381 4.65 1.40 34.44 4.02
2840 3896 1.143073 GGGTTGGGGATATCACTGTCC 59.857 57.143 4.65 4.82 32.06 4.02
2841 3897 1.843851 TGGGTTGGGGATATCACTGTC 59.156 52.381 4.65 0.00 0.00 3.51
2842 3898 1.979809 TGGGTTGGGGATATCACTGT 58.020 50.000 4.65 0.00 0.00 3.55
2843 3899 2.442878 TGATGGGTTGGGGATATCACTG 59.557 50.000 4.65 0.00 0.00 3.66
2844 3900 2.713167 CTGATGGGTTGGGGATATCACT 59.287 50.000 4.65 0.00 0.00 3.41
2845 3901 2.224867 CCTGATGGGTTGGGGATATCAC 60.225 54.545 4.83 0.00 0.00 3.06
2846 3902 2.065007 CCTGATGGGTTGGGGATATCA 58.935 52.381 4.83 0.00 0.00 2.15
2847 3903 2.887151 CCTGATGGGTTGGGGATATC 57.113 55.000 0.00 0.00 0.00 1.63
2864 3920 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
2865 3921 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
2866 3922 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
2867 3923 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
2868 3924 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
2869 3925 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
2870 3926 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
2871 3927 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
2872 3928 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
2873 3929 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
2874 3930 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
2875 3931 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
2876 3932 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
2877 3933 1.209261 TCAGGAATAATGCGAGCACCA 59.791 47.619 0.00 0.00 0.00 4.17
2878 3934 1.953559 TCAGGAATAATGCGAGCACC 58.046 50.000 0.00 0.00 0.00 5.01
2879 3935 4.558538 AATTCAGGAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
2880 3936 6.882610 ATAAATTCAGGAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
2881 3937 7.862372 TGAAATAAATTCAGGAATAATGCGAGC 59.138 33.333 0.00 0.00 43.08 5.03
2897 3953 8.872845 GCATCACCGAAAATCTTGAAATAAATT 58.127 29.630 0.00 0.00 0.00 1.82
2898 3954 8.034215 TGCATCACCGAAAATCTTGAAATAAAT 58.966 29.630 0.00 0.00 0.00 1.40
2899 3955 7.328249 GTGCATCACCGAAAATCTTGAAATAAA 59.672 33.333 0.00 0.00 0.00 1.40
2900 3956 6.806249 GTGCATCACCGAAAATCTTGAAATAA 59.194 34.615 0.00 0.00 0.00 1.40
2901 3957 6.150976 AGTGCATCACCGAAAATCTTGAAATA 59.849 34.615 0.00 0.00 34.49 1.40
2902 3958 5.047802 AGTGCATCACCGAAAATCTTGAAAT 60.048 36.000 0.00 0.00 34.49 2.17
2903 3959 4.278170 AGTGCATCACCGAAAATCTTGAAA 59.722 37.500 0.00 0.00 34.49 2.69
2904 3960 3.820467 AGTGCATCACCGAAAATCTTGAA 59.180 39.130 0.00 0.00 34.49 2.69
2905 3961 3.411446 AGTGCATCACCGAAAATCTTGA 58.589 40.909 0.00 0.00 34.49 3.02
2906 3962 3.837213 AGTGCATCACCGAAAATCTTG 57.163 42.857 0.00 0.00 34.49 3.02
2907 3963 4.278170 TGAAAGTGCATCACCGAAAATCTT 59.722 37.500 0.00 0.00 34.49 2.40
2908 3964 3.820467 TGAAAGTGCATCACCGAAAATCT 59.180 39.130 0.00 0.00 34.49 2.40
2909 3965 4.159377 TGAAAGTGCATCACCGAAAATC 57.841 40.909 0.00 0.00 34.49 2.17
2910 3966 4.164822 CTGAAAGTGCATCACCGAAAAT 57.835 40.909 0.00 0.00 34.49 1.82
2911 3967 3.624326 CTGAAAGTGCATCACCGAAAA 57.376 42.857 0.00 0.00 34.49 2.29
2925 3981 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
2926 3982 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
2927 3983 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
2928 3984 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
2929 3985 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
2930 3986 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
2951 4007 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
2952 4008 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
2965 4021 6.364165 TCTTGAAATTTACGAACTCACCGTAG 59.636 38.462 0.00 0.00 42.42 3.51
2966 4022 6.215121 TCTTGAAATTTACGAACTCACCGTA 58.785 36.000 0.00 0.00 40.95 4.02
2967 4023 5.051816 TCTTGAAATTTACGAACTCACCGT 58.948 37.500 0.00 0.00 43.26 4.83
2968 4024 5.585500 TCTTGAAATTTACGAACTCACCG 57.415 39.130 0.00 0.00 0.00 4.94
2969 4025 7.129109 TCATCTTGAAATTTACGAACTCACC 57.871 36.000 0.00 0.00 0.00 4.02
2972 4028 9.374960 GCATATCATCTTGAAATTTACGAACTC 57.625 33.333 0.00 0.00 0.00 3.01
2973 4029 8.345565 GGCATATCATCTTGAAATTTACGAACT 58.654 33.333 0.00 0.00 0.00 3.01
2974 4030 7.321271 CGGCATATCATCTTGAAATTTACGAAC 59.679 37.037 0.00 0.00 0.00 3.95
2975 4031 7.351981 CGGCATATCATCTTGAAATTTACGAA 58.648 34.615 0.00 0.00 0.00 3.85
2976 4032 6.073276 CCGGCATATCATCTTGAAATTTACGA 60.073 38.462 0.00 0.00 0.00 3.43
2977 4033 6.079763 CCGGCATATCATCTTGAAATTTACG 58.920 40.000 0.00 0.00 0.00 3.18
2978 4034 5.858581 GCCGGCATATCATCTTGAAATTTAC 59.141 40.000 24.80 0.00 0.00 2.01
2979 4035 5.769662 AGCCGGCATATCATCTTGAAATTTA 59.230 36.000 31.54 0.00 0.00 1.40
2980 4036 4.586001 AGCCGGCATATCATCTTGAAATTT 59.414 37.500 31.54 0.00 0.00 1.82
2981 4037 4.147321 AGCCGGCATATCATCTTGAAATT 58.853 39.130 31.54 0.00 0.00 1.82
2982 4038 3.755378 GAGCCGGCATATCATCTTGAAAT 59.245 43.478 31.54 0.06 0.00 2.17
2983 4039 3.141398 GAGCCGGCATATCATCTTGAAA 58.859 45.455 31.54 0.00 0.00 2.69
2984 4040 2.104622 TGAGCCGGCATATCATCTTGAA 59.895 45.455 31.54 0.00 0.00 2.69
2985 4041 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
2986 4042 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
2987 4043 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
2988 4044 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
2989 4045 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
2990 4046 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
2991 4047 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
2992 4048 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
2993 4049 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
2994 4050 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
2995 4051 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
2996 4052 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
2997 4053 2.606155 CTTCGAGAGACTGAGCCGGC 62.606 65.000 21.89 21.89 41.84 6.13
2998 4054 1.431440 CTTCGAGAGACTGAGCCGG 59.569 63.158 0.00 0.00 41.84 6.13
2999 4055 1.309499 ACCTTCGAGAGACTGAGCCG 61.309 60.000 0.00 0.00 41.84 5.52
3000 4056 0.172352 CACCTTCGAGAGACTGAGCC 59.828 60.000 0.00 0.00 41.84 4.70
3001 4057 0.457681 GCACCTTCGAGAGACTGAGC 60.458 60.000 0.00 0.00 41.84 4.26
3002 4058 1.132262 GAGCACCTTCGAGAGACTGAG 59.868 57.143 0.00 0.00 41.84 3.35
3003 4059 1.169577 GAGCACCTTCGAGAGACTGA 58.830 55.000 0.00 0.00 41.84 3.41
3004 4060 0.884514 TGAGCACCTTCGAGAGACTG 59.115 55.000 0.00 0.00 41.84 3.51
3005 4061 1.846007 ATGAGCACCTTCGAGAGACT 58.154 50.000 0.00 0.00 41.84 3.24
3006 4062 2.034053 CCTATGAGCACCTTCGAGAGAC 59.966 54.545 0.00 0.00 41.84 3.36
3007 4063 2.302260 CCTATGAGCACCTTCGAGAGA 58.698 52.381 0.00 0.00 39.20 3.10
3008 4064 1.339610 CCCTATGAGCACCTTCGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
3009 4065 1.063942 TCCCTATGAGCACCTTCGAGA 60.064 52.381 0.00 0.00 0.00 4.04
3010 4066 1.403814 TCCCTATGAGCACCTTCGAG 58.596 55.000 0.00 0.00 0.00 4.04
3011 4067 2.088104 ATCCCTATGAGCACCTTCGA 57.912 50.000 0.00 0.00 0.00 3.71
3012 4068 2.232452 CCTATCCCTATGAGCACCTTCG 59.768 54.545 0.00 0.00 0.00 3.79
3013 4069 2.569404 CCCTATCCCTATGAGCACCTTC 59.431 54.545 0.00 0.00 0.00 3.46
3014 4070 2.089925 ACCCTATCCCTATGAGCACCTT 60.090 50.000 0.00 0.00 0.00 3.50
3015 4071 1.509961 ACCCTATCCCTATGAGCACCT 59.490 52.381 0.00 0.00 0.00 4.00
3016 4072 1.625818 CACCCTATCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
3017 4073 2.037772 CACACCCTATCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
3018 4074 2.329267 CACACCCTATCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
3019 4075 1.002544 GCACACCCTATCCCTATGAGC 59.997 57.143 0.00 0.00 0.00 4.26
3020 4076 1.273606 CGCACACCCTATCCCTATGAG 59.726 57.143 0.00 0.00 0.00 2.90
3021 4077 1.338107 CGCACACCCTATCCCTATGA 58.662 55.000 0.00 0.00 0.00 2.15
3022 4078 1.048601 ACGCACACCCTATCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
3023 4079 1.048601 CACGCACACCCTATCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
3024 4080 0.324923 ACACGCACACCCTATCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
3025 4081 1.612442 ACACGCACACCCTATCCCT 60.612 57.895 0.00 0.00 0.00 4.20
3026 4082 1.449601 CACACGCACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
3027 4083 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
3028 4084 0.320421 ACACACACGCACACCCTATC 60.320 55.000 0.00 0.00 0.00 2.08
3029 4085 0.107831 AACACACACGCACACCCTAT 59.892 50.000 0.00 0.00 0.00 2.57
3030 4086 0.531090 GAACACACACGCACACCCTA 60.531 55.000 0.00 0.00 0.00 3.53
3031 4087 1.817941 GAACACACACGCACACCCT 60.818 57.895 0.00 0.00 0.00 4.34
3032 4088 1.444119 ATGAACACACACGCACACCC 61.444 55.000 0.00 0.00 0.00 4.61
3033 4089 1.194547 CTATGAACACACACGCACACC 59.805 52.381 0.00 0.00 0.00 4.16
3034 4090 1.194547 CCTATGAACACACACGCACAC 59.805 52.381 0.00 0.00 0.00 3.82
3035 4091 1.507562 CCTATGAACACACACGCACA 58.492 50.000 0.00 0.00 0.00 4.57
3036 4092 0.796312 CCCTATGAACACACACGCAC 59.204 55.000 0.00 0.00 0.00 5.34
3037 4093 0.682292 TCCCTATGAACACACACGCA 59.318 50.000 0.00 0.00 0.00 5.24
3038 4094 1.665679 CATCCCTATGAACACACACGC 59.334 52.381 0.00 0.00 34.84 5.34
3039 4095 3.190079 CTCATCCCTATGAACACACACG 58.810 50.000 0.00 0.00 41.57 4.49
3040 4096 3.935203 CACTCATCCCTATGAACACACAC 59.065 47.826 0.00 0.00 41.57 3.82
3041 4097 3.582647 ACACTCATCCCTATGAACACACA 59.417 43.478 0.00 0.00 41.57 3.72
3042 4098 4.207891 ACACTCATCCCTATGAACACAC 57.792 45.455 0.00 0.00 41.57 3.82
3043 4099 5.425217 ACATACACTCATCCCTATGAACACA 59.575 40.000 0.00 0.00 41.57 3.72
3044 4100 5.755375 CACATACACTCATCCCTATGAACAC 59.245 44.000 0.00 0.00 41.57 3.32
3045 4101 5.684813 GCACATACACTCATCCCTATGAACA 60.685 44.000 0.00 0.00 41.57 3.18
3046 4102 4.752101 GCACATACACTCATCCCTATGAAC 59.248 45.833 0.00 0.00 41.57 3.18
3047 4103 4.501400 CGCACATACACTCATCCCTATGAA 60.501 45.833 0.00 0.00 41.57 2.57
3048 4104 3.005791 CGCACATACACTCATCCCTATGA 59.994 47.826 0.00 0.00 39.87 2.15
3049 4105 3.243873 ACGCACATACACTCATCCCTATG 60.244 47.826 0.00 0.00 0.00 2.23
3050 4106 2.965831 ACGCACATACACTCATCCCTAT 59.034 45.455 0.00 0.00 0.00 2.57
3051 4107 2.100749 CACGCACATACACTCATCCCTA 59.899 50.000 0.00 0.00 0.00 3.53
3052 4108 1.134699 CACGCACATACACTCATCCCT 60.135 52.381 0.00 0.00 0.00 4.20
3053 4109 1.290203 CACGCACATACACTCATCCC 58.710 55.000 0.00 0.00 0.00 3.85
3054 4110 2.010145 ACACGCACATACACTCATCC 57.990 50.000 0.00 0.00 0.00 3.51
3055 4111 3.507786 TGTACACGCACATACACTCATC 58.492 45.455 0.00 0.00 0.00 2.92
3056 4112 3.586100 TGTACACGCACATACACTCAT 57.414 42.857 0.00 0.00 0.00 2.90
3057 4113 3.057174 TCATGTACACGCACATACACTCA 60.057 43.478 0.00 0.00 37.02 3.41
3058 4114 3.507786 TCATGTACACGCACATACACTC 58.492 45.455 0.00 0.00 37.02 3.51
3059 4115 3.511699 CTCATGTACACGCACATACACT 58.488 45.455 0.00 0.00 37.02 3.55
3060 4116 2.029244 GCTCATGTACACGCACATACAC 59.971 50.000 0.00 0.00 37.02 2.90
3061 4117 2.267426 GCTCATGTACACGCACATACA 58.733 47.619 0.00 0.00 37.02 2.29
3062 4118 1.255342 CGCTCATGTACACGCACATAC 59.745 52.381 0.00 0.00 37.02 2.39
3063 4119 1.555477 CGCTCATGTACACGCACATA 58.445 50.000 0.00 0.00 37.02 2.29
3064 4120 2.372919 CGCTCATGTACACGCACAT 58.627 52.632 0.00 0.00 39.76 3.21
3065 4121 3.855109 CGCTCATGTACACGCACA 58.145 55.556 0.00 0.00 0.00 4.57
3069 4125 0.093535 CACAAGCGCTCATGTACACG 59.906 55.000 12.06 0.00 0.00 4.49
3070 4126 1.126846 GACACAAGCGCTCATGTACAC 59.873 52.381 22.37 9.99 0.00 2.90
3071 4127 1.000843 AGACACAAGCGCTCATGTACA 59.999 47.619 22.37 0.00 0.00 2.90
3072 4128 1.391485 CAGACACAAGCGCTCATGTAC 59.609 52.381 22.37 15.28 0.00 2.90
3073 4129 1.000843 ACAGACACAAGCGCTCATGTA 59.999 47.619 22.37 0.00 0.00 2.29
3074 4130 0.250038 ACAGACACAAGCGCTCATGT 60.250 50.000 22.48 22.48 0.00 3.21
3075 4131 1.391485 GTACAGACACAAGCGCTCATG 59.609 52.381 12.06 15.18 0.00 3.07
3076 4132 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
3077 4133 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
3078 4134 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
3079 4135 0.319900 CCAGTACAGACACAAGCGCT 60.320 55.000 2.64 2.64 0.00 5.92
3080 4136 0.600255 ACCAGTACAGACACAAGCGC 60.600 55.000 0.00 0.00 0.00 5.92
3081 4137 1.139989 CACCAGTACAGACACAAGCG 58.860 55.000 0.00 0.00 0.00 4.68
3082 4138 0.868406 GCACCAGTACAGACACAAGC 59.132 55.000 0.00 0.00 0.00 4.01
3083 4139 2.533266 AGCACCAGTACAGACACAAG 57.467 50.000 0.00 0.00 0.00 3.16
3084 4140 4.409718 TTTAGCACCAGTACAGACACAA 57.590 40.909 0.00 0.00 0.00 3.33
3085 4141 4.409718 TTTTAGCACCAGTACAGACACA 57.590 40.909 0.00 0.00 0.00 3.72
3125 4181 4.513318 GCTCGAGCTCTATTAGGCATTTTT 59.487 41.667 29.88 0.00 38.21 1.94
3182 4238 1.812922 GCTGACACGGATCCAGCTG 60.813 63.158 13.41 6.78 46.96 4.24
3196 4252 2.337583 GTGAGACAAATACGCTGCTGA 58.662 47.619 0.00 0.00 0.00 4.26
3224 4280 1.946768 CGGGATAAAATGATGCCACGT 59.053 47.619 0.00 0.00 37.16 4.49
3229 4285 1.197721 CGGAGCGGGATAAAATGATGC 59.802 52.381 0.00 0.00 0.00 3.91
3239 4295 1.056660 AATGGAATACGGAGCGGGAT 58.943 50.000 0.00 0.00 0.00 3.85
3292 4348 1.302511 GGGTGCTGGACGTGTTCAT 60.303 57.895 0.00 0.00 0.00 2.57
3304 4360 1.542375 AGGAAGTGGGATGGGTGCT 60.542 57.895 0.00 0.00 0.00 4.40
3342 4398 2.354303 CCATTTGACAAGGCATGTGCAT 60.354 45.455 0.00 0.00 44.12 3.96
3343 4399 1.001068 CCATTTGACAAGGCATGTGCA 59.999 47.619 0.00 0.00 44.12 4.57
3352 4408 5.685511 CCTGAAACGTTTACCATTTGACAAG 59.314 40.000 14.65 0.00 0.00 3.16
3362 4418 1.196127 CTTCGGCCTGAAACGTTTACC 59.804 52.381 14.65 11.98 35.79 2.85
3363 4419 1.399343 GCTTCGGCCTGAAACGTTTAC 60.399 52.381 14.65 8.38 35.79 2.01
3364 4420 0.869730 GCTTCGGCCTGAAACGTTTA 59.130 50.000 14.65 1.97 35.79 2.01
3365 4421 1.652563 GCTTCGGCCTGAAACGTTT 59.347 52.632 14.57 14.57 35.79 3.60
3366 4422 2.604174 CGCTTCGGCCTGAAACGTT 61.604 57.895 18.55 0.00 40.40 3.99
3367 4423 3.041940 CGCTTCGGCCTGAAACGT 61.042 61.111 18.55 0.00 40.40 3.99
3368 4424 4.445545 GCGCTTCGGCCTGAAACG 62.446 66.667 20.95 20.95 46.29 3.60
3369 4425 3.028366 GAGCGCTTCGGCCTGAAAC 62.028 63.158 13.26 0.85 35.79 2.78
3370 4426 2.742372 GAGCGCTTCGGCCTGAAA 60.742 61.111 13.26 0.00 35.79 2.69
3371 4427 4.760047 GGAGCGCTTCGGCCTGAA 62.760 66.667 13.26 5.47 37.76 3.02
3379 4435 3.119096 GAACCGGTGGAGCGCTTC 61.119 66.667 13.26 11.25 0.00 3.86
3385 4441 3.382832 AGGAGCGAACCGGTGGAG 61.383 66.667 8.52 3.45 37.83 3.86
3386 4442 3.691342 CAGGAGCGAACCGGTGGA 61.691 66.667 8.52 0.00 37.83 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.