Multiple sequence alignment - TraesCS2A01G233800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G233800 chr2A 100.000 7565 0 0 1 7565 278998677 278991113 0.000000e+00 13971.0
1 TraesCS2A01G233800 chr2A 96.040 202 6 2 2230 2430 196518155 196517955 2.040000e-85 327.0
2 TraesCS2A01G233800 chr2A 94.660 206 9 1 2228 2431 728144166 728143961 1.220000e-82 318.0
3 TraesCS2A01G233800 chr2A 79.188 394 66 10 159 538 759610341 759609950 7.530000e-65 259.0
4 TraesCS2A01G233800 chr2B 96.020 3191 74 29 3791 6975 278806329 278809472 0.000000e+00 5140.0
5 TraesCS2A01G233800 chr2B 94.452 1532 44 9 736 2237 278803555 278805075 0.000000e+00 2320.0
6 TraesCS2A01G233800 chr2B 97.634 1268 26 4 2422 3688 278805067 278806331 0.000000e+00 2172.0
7 TraesCS2A01G233800 chr2B 86.355 535 62 5 17 540 108225936 108226470 2.370000e-159 573.0
8 TraesCS2A01G233800 chr2B 86.517 534 57 8 17 538 425394383 425393853 2.370000e-159 573.0
9 TraesCS2A01G233800 chr2B 93.600 125 7 1 3674 3797 123063429 123063305 1.300000e-42 185.0
10 TraesCS2A01G233800 chr2D 98.562 2852 35 3 3791 6636 252138408 252141259 0.000000e+00 5035.0
11 TraesCS2A01G233800 chr2D 98.106 1267 21 3 2422 3688 252137147 252138410 0.000000e+00 2204.0
12 TraesCS2A01G233800 chr2D 97.394 1151 19 4 736 1875 252132459 252133609 0.000000e+00 1949.0
13 TraesCS2A01G233800 chr2D 89.894 663 51 6 2 650 252131414 252132074 0.000000e+00 839.0
14 TraesCS2A01G233800 chr2D 97.838 370 8 0 1868 2237 252136786 252137155 2.300000e-179 640.0
15 TraesCS2A01G233800 chr2D 96.418 335 12 0 6638 6972 252141309 252141643 3.080000e-153 553.0
16 TraesCS2A01G233800 chr2D 82.031 384 55 11 163 538 507033115 507032738 1.580000e-81 315.0
17 TraesCS2A01G233800 chr2D 94.366 71 3 1 651 721 252132158 252132227 2.890000e-19 108.0
18 TraesCS2A01G233800 chr1D 94.343 548 24 3 6992 7533 235669428 235668882 0.000000e+00 833.0
19 TraesCS2A01G233800 chr4B 94.022 552 26 3 6992 7536 64814935 64814384 0.000000e+00 830.0
20 TraesCS2A01G233800 chr4B 88.462 312 27 6 2895 3205 558595923 558595620 1.200000e-97 368.0
21 TraesCS2A01G233800 chr4B 88.103 311 28 7 2896 3205 646259625 646259927 2.010000e-95 361.0
22 TraesCS2A01G233800 chr4B 78.319 452 68 24 115 546 497158045 497158486 1.620000e-66 265.0
23 TraesCS2A01G233800 chr4D 93.841 552 27 3 6992 7536 37261739 37261188 0.000000e+00 824.0
24 TraesCS2A01G233800 chr3A 93.829 551 28 2 6992 7536 734027228 734026678 0.000000e+00 824.0
25 TraesCS2A01G233800 chr3A 86.226 530 60 6 19 536 443027215 443027743 5.130000e-156 562.0
26 TraesCS2A01G233800 chr3A 98.020 202 4 0 2228 2429 740079547 740079748 1.210000e-92 351.0
27 TraesCS2A01G233800 chr3A 95.798 119 5 0 3684 3802 65345868 65345750 7.750000e-45 193.0
28 TraesCS2A01G233800 chr5D 93.648 551 29 3 6992 7536 501410029 501410579 0.000000e+00 819.0
29 TraesCS2A01G233800 chr5D 85.172 553 65 10 2 540 360144301 360144850 1.110000e-152 551.0
30 TraesCS2A01G233800 chr3D 93.345 556 27 4 6992 7540 590827472 590826920 0.000000e+00 813.0
31 TraesCS2A01G233800 chr3D 88.587 368 35 5 2841 3207 456927017 456927378 2.510000e-119 440.0
32 TraesCS2A01G233800 chr3D 89.157 332 30 5 1870 2197 456926348 456926677 7.070000e-110 409.0
33 TraesCS2A01G233800 chr3D 85.897 312 34 6 2895 3205 512559063 512558761 2.630000e-84 324.0
34 TraesCS2A01G233800 chr3D 85.357 280 38 3 1585 1863 456925957 456926234 3.450000e-73 287.0
35 TraesCS2A01G233800 chr4A 93.443 549 30 3 6994 7536 607953559 607954107 0.000000e+00 809.0
36 TraesCS2A01G233800 chr4A 82.719 434 55 14 115 538 320645354 320645777 1.200000e-97 368.0
37 TraesCS2A01G233800 chr4A 99.457 184 1 0 2238 2421 519575491 519575674 1.220000e-87 335.0
38 TraesCS2A01G233800 chr4A 96.040 202 6 2 2230 2430 381476990 381476790 2.040000e-85 327.0
39 TraesCS2A01G233800 chr4A 95.238 126 3 3 3671 3793 467233710 467233835 5.990000e-46 196.0
40 TraesCS2A01G233800 chr4A 90.071 141 10 4 3652 3792 159389829 159389965 6.030000e-41 180.0
41 TraesCS2A01G233800 chr7B 93.297 552 30 3 6992 7536 89056 89607 0.000000e+00 808.0
42 TraesCS2A01G233800 chr7B 86.330 534 60 7 17 538 745447458 745447990 3.060000e-158 569.0
43 TraesCS2A01G233800 chr7B 78.753 433 61 19 115 538 509795312 509795722 2.090000e-65 261.0
44 TraesCS2A01G233800 chr7B 76.574 397 67 19 163 538 194499265 194498874 2.150000e-45 195.0
45 TraesCS2A01G233800 chr3B 93.285 551 31 2 6992 7536 125802149 125801599 0.000000e+00 808.0
46 TraesCS2A01G233800 chr3B 85.932 526 59 9 26 538 605284140 605283617 1.440000e-151 547.0
47 TraesCS2A01G233800 chr3B 86.032 315 32 9 2892 3205 119397876 119398179 2.040000e-85 327.0
48 TraesCS2A01G233800 chr3B 97.414 116 2 1 3679 3793 214560150 214560265 5.990000e-46 196.0
49 TraesCS2A01G233800 chr3B 93.077 130 7 2 3682 3811 70582103 70582230 1.000000e-43 189.0
50 TraesCS2A01G233800 chr5B 86.891 534 56 6 17 538 643444582 643444051 3.040000e-163 586.0
51 TraesCS2A01G233800 chr7D 86.679 533 59 6 17 538 182481239 182481770 1.410000e-161 580.0
52 TraesCS2A01G233800 chr6B 89.583 336 31 4 1870 2201 642939765 642940100 2.520000e-114 424.0
53 TraesCS2A01G233800 chr6B 100.000 31 0 0 7535 7565 659257993 659258023 2.950000e-04 58.4
54 TraesCS2A01G233800 chr1A 96.154 208 4 4 2229 2435 137854377 137854581 3.380000e-88 337.0
55 TraesCS2A01G233800 chr1A 98.404 188 3 0 2234 2421 390635769 390635956 1.570000e-86 331.0
56 TraesCS2A01G233800 chr1A 91.266 229 12 5 2209 2435 495129191 495128969 9.540000e-79 305.0
57 TraesCS2A01G233800 chr1A 90.000 140 10 4 3686 3823 517513253 517513116 2.170000e-40 178.0
58 TraesCS2A01G233800 chr6A 96.985 199 4 2 2229 2426 273584439 273584242 4.370000e-87 333.0
59 TraesCS2A01G233800 chr6D 82.143 392 49 14 163 538 294586027 294586413 4.410000e-82 316.0
60 TraesCS2A01G233800 chr6D 77.778 405 67 13 159 542 467077638 467078040 2.120000e-55 228.0
61 TraesCS2A01G233800 chr6D 96.552 116 3 1 3686 3801 81674744 81674630 2.790000e-44 191.0
62 TraesCS2A01G233800 chrUn 93.023 129 6 3 3686 3813 301836922 301837048 1.300000e-42 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G233800 chr2A 278991113 278998677 7564 True 13971.000000 13971 100.000000 1 7565 1 chr2A.!!$R2 7564
1 TraesCS2A01G233800 chr2B 278803555 278809472 5917 False 3210.666667 5140 96.035333 736 6975 3 chr2B.!!$F2 6239
2 TraesCS2A01G233800 chr2B 108225936 108226470 534 False 573.000000 573 86.355000 17 540 1 chr2B.!!$F1 523
3 TraesCS2A01G233800 chr2B 425393853 425394383 530 True 573.000000 573 86.517000 17 538 1 chr2B.!!$R2 521
4 TraesCS2A01G233800 chr2D 252131414 252141643 10229 False 1618.285714 5035 96.082571 2 6972 7 chr2D.!!$F1 6970
5 TraesCS2A01G233800 chr1D 235668882 235669428 546 True 833.000000 833 94.343000 6992 7533 1 chr1D.!!$R1 541
6 TraesCS2A01G233800 chr4B 64814384 64814935 551 True 830.000000 830 94.022000 6992 7536 1 chr4B.!!$R1 544
7 TraesCS2A01G233800 chr4D 37261188 37261739 551 True 824.000000 824 93.841000 6992 7536 1 chr4D.!!$R1 544
8 TraesCS2A01G233800 chr3A 734026678 734027228 550 True 824.000000 824 93.829000 6992 7536 1 chr3A.!!$R2 544
9 TraesCS2A01G233800 chr3A 443027215 443027743 528 False 562.000000 562 86.226000 19 536 1 chr3A.!!$F1 517
10 TraesCS2A01G233800 chr5D 501410029 501410579 550 False 819.000000 819 93.648000 6992 7536 1 chr5D.!!$F2 544
11 TraesCS2A01G233800 chr5D 360144301 360144850 549 False 551.000000 551 85.172000 2 540 1 chr5D.!!$F1 538
12 TraesCS2A01G233800 chr3D 590826920 590827472 552 True 813.000000 813 93.345000 6992 7540 1 chr3D.!!$R2 548
13 TraesCS2A01G233800 chr3D 456925957 456927378 1421 False 378.666667 440 87.700333 1585 3207 3 chr3D.!!$F1 1622
14 TraesCS2A01G233800 chr4A 607953559 607954107 548 False 809.000000 809 93.443000 6994 7536 1 chr4A.!!$F5 542
15 TraesCS2A01G233800 chr7B 89056 89607 551 False 808.000000 808 93.297000 6992 7536 1 chr7B.!!$F1 544
16 TraesCS2A01G233800 chr7B 745447458 745447990 532 False 569.000000 569 86.330000 17 538 1 chr7B.!!$F3 521
17 TraesCS2A01G233800 chr3B 125801599 125802149 550 True 808.000000 808 93.285000 6992 7536 1 chr3B.!!$R1 544
18 TraesCS2A01G233800 chr3B 605283617 605284140 523 True 547.000000 547 85.932000 26 538 1 chr3B.!!$R2 512
19 TraesCS2A01G233800 chr5B 643444051 643444582 531 True 586.000000 586 86.891000 17 538 1 chr5B.!!$R1 521
20 TraesCS2A01G233800 chr7D 182481239 182481770 531 False 580.000000 580 86.679000 17 538 1 chr7D.!!$F1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 816 1.077212 CCTGGTGATGGGCTTGAGG 60.077 63.158 0.00 0.00 0.00 3.86 F
2150 5801 1.268899 ACAAGCACAGATTTGCAGCTC 59.731 47.619 4.57 0.00 45.62 4.09 F
3524 7337 0.452184 GGTGATCGCGAACTCTGAGA 59.548 55.000 15.24 0.00 0.00 3.27 F
3783 7596 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44 F
5343 9160 1.613437 GCTGGTGGTGCATACAACTTT 59.387 47.619 10.23 0.00 33.30 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2401 6212 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06 R
3779 7592 0.251077 ACAGACGTACTCCCTCCGTT 60.251 55.000 0.00 0.00 34.51 4.44 R
5343 9160 4.383770 GGTATACTTGAACTGCAGCCCTTA 60.384 45.833 15.27 0.00 0.00 2.69 R
5686 9504 3.754323 CACGTGTTGGAGGGCTTAAATTA 59.246 43.478 7.58 0.00 0.00 1.40 R
7106 10995 0.106918 TTCAACTGCGGGGAGTGTTT 60.107 50.000 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.525077 GGTTGGCCACGTTCACTCA 60.525 57.895 3.88 0.00 34.09 3.41
103 104 3.191162 CCGAGTTGATCCAGAAAATTGCA 59.809 43.478 0.00 0.00 0.00 4.08
223 224 3.446161 TGAGAGGTTACGGTCGATTGAAT 59.554 43.478 0.00 0.00 0.00 2.57
290 291 9.803315 GGTTTTACATCTCTTTCTTGTTCTTTT 57.197 29.630 0.00 0.00 0.00 2.27
306 307 8.614994 TTGTTCTTTTTCTCTCATTTTTCGTC 57.385 30.769 0.00 0.00 0.00 4.20
408 421 2.478292 GTTAGATTGGTCCCTCCTGGA 58.522 52.381 0.00 0.00 42.41 3.86
425 438 3.153919 CTGGATTTCGGGTCCTCAAAAA 58.846 45.455 0.00 0.00 36.68 1.94
486 502 1.664649 CCTTCAACGTGAGCTGCGA 60.665 57.895 13.33 0.00 0.00 5.10
512 528 2.516888 CCCCCGGCGTCAAGGATAT 61.517 63.158 6.01 0.00 0.00 1.63
568 584 5.368145 AGTCACTTTGCTTATGAACACTCA 58.632 37.500 0.00 0.00 35.56 3.41
569 585 6.000219 AGTCACTTTGCTTATGAACACTCAT 59.000 36.000 0.00 0.00 44.71 2.90
624 640 3.916172 CGATGTTTTGAACTTGGAGCATG 59.084 43.478 0.00 0.00 0.00 4.06
654 753 1.200474 CCGCATGCGACGTACAGTAG 61.200 60.000 39.90 16.04 42.83 2.57
663 762 2.160013 CGACGTACAGTAGCAAGCAAAC 60.160 50.000 0.00 0.00 0.00 2.93
717 816 1.077212 CCTGGTGATGGGCTTGAGG 60.077 63.158 0.00 0.00 0.00 3.86
734 833 2.978824 GCCTGAGCCTAACCGACA 59.021 61.111 0.00 0.00 0.00 4.35
1023 1341 2.678934 AGCTCCGGCCGAACTACA 60.679 61.111 30.73 1.39 39.73 2.74
1771 2119 5.089970 TGCTCTTCTGCTTCAAGCTATTA 57.910 39.130 11.57 0.00 42.97 0.98
2056 5707 7.502226 ACTCCAGTTGATTCAAGTGTTTATTCA 59.498 33.333 25.27 6.44 41.59 2.57
2150 5801 1.268899 ACAAGCACAGATTTGCAGCTC 59.731 47.619 4.57 0.00 45.62 4.09
2277 6088 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
2278 6089 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
2286 6097 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
2287 6098 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
2288 6099 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
2289 6100 6.483307 GCCATAAGTATTGCACATCTAAGTCA 59.517 38.462 0.00 0.00 0.00 3.41
2290 6101 7.173907 GCCATAAGTATTGCACATCTAAGTCAT 59.826 37.037 0.00 0.00 0.00 3.06
2291 6102 9.710900 CCATAAGTATTGCACATCTAAGTCATA 57.289 33.333 0.00 0.00 0.00 2.15
2295 6106 8.824159 AGTATTGCACATCTAAGTCATATGTC 57.176 34.615 1.90 0.00 31.60 3.06
2296 6107 8.424133 AGTATTGCACATCTAAGTCATATGTCA 58.576 33.333 1.90 0.00 31.60 3.58
2297 6108 9.212641 GTATTGCACATCTAAGTCATATGTCAT 57.787 33.333 1.90 0.00 31.60 3.06
2298 6109 8.687292 ATTGCACATCTAAGTCATATGTCATT 57.313 30.769 1.90 0.00 31.60 2.57
2299 6110 7.486802 TGCACATCTAAGTCATATGTCATTG 57.513 36.000 1.90 0.00 31.60 2.82
2300 6111 7.274447 TGCACATCTAAGTCATATGTCATTGA 58.726 34.615 1.90 0.00 31.60 2.57
2301 6112 7.935210 TGCACATCTAAGTCATATGTCATTGAT 59.065 33.333 1.90 0.00 31.60 2.57
2302 6113 8.441608 GCACATCTAAGTCATATGTCATTGATC 58.558 37.037 1.90 0.00 31.60 2.92
2303 6114 9.708092 CACATCTAAGTCATATGTCATTGATCT 57.292 33.333 1.90 0.00 31.60 2.75
2337 6148 9.442047 AGATTCGTGTGAATATTTTCTTTCTCT 57.558 29.630 0.00 0.00 44.79 3.10
2371 6182 9.950680 TTTTCTCTTTATGTTTGATTCACTCAC 57.049 29.630 0.00 0.00 32.17 3.51
2372 6183 8.908786 TTCTCTTTATGTTTGATTCACTCACT 57.091 30.769 0.00 0.00 32.17 3.41
2373 6184 8.908786 TCTCTTTATGTTTGATTCACTCACTT 57.091 30.769 0.00 0.00 32.17 3.16
2374 6185 9.996554 TCTCTTTATGTTTGATTCACTCACTTA 57.003 29.630 0.00 0.00 32.17 2.24
2376 6187 9.996554 TCTTTATGTTTGATTCACTCACTTAGA 57.003 29.630 0.00 0.00 32.17 2.10
2379 6190 9.725019 TTATGTTTGATTCACTCACTTAGATGT 57.275 29.630 0.00 0.00 32.17 3.06
2380 6191 7.425577 TGTTTGATTCACTCACTTAGATGTG 57.574 36.000 0.00 0.00 39.15 3.21
2381 6192 6.073058 TGTTTGATTCACTCACTTAGATGTGC 60.073 38.462 0.00 0.00 37.81 4.57
2382 6193 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
2383 6194 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
2384 6195 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
2385 6196 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
2386 6197 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
2387 6198 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
2388 6199 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
2389 6200 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
2390 6201 7.976175 TCACTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
2391 6202 7.223582 CACTCACTTAGATGTGCAATAACTAGG 59.776 40.741 0.00 0.00 37.81 3.02
2392 6203 6.582636 TCACTTAGATGTGCAATAACTAGGG 58.417 40.000 0.00 0.00 37.81 3.53
2393 6204 5.237344 CACTTAGATGTGCAATAACTAGGGC 59.763 44.000 0.00 0.00 0.00 5.19
2394 6205 3.931907 AGATGTGCAATAACTAGGGCA 57.068 42.857 0.00 0.00 0.00 5.36
2399 6210 3.931907 TGCAATAACTAGGGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
2401 6212 4.960938 TGCAATAACTAGGGCACATCTAG 58.039 43.478 0.00 0.00 39.88 2.43
2402 6213 4.653801 TGCAATAACTAGGGCACATCTAGA 59.346 41.667 0.00 0.00 38.02 2.43
2403 6214 5.307976 TGCAATAACTAGGGCACATCTAGAT 59.692 40.000 0.00 0.00 38.02 1.98
2404 6215 5.641209 GCAATAACTAGGGCACATCTAGATG 59.359 44.000 27.63 27.63 44.15 2.90
2416 6227 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
2420 6231 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
2421 6232 1.460497 TGTGCCCTAGACACACCCA 60.460 57.895 12.81 0.00 42.88 4.51
2422 6233 0.840288 TGTGCCCTAGACACACCCAT 60.840 55.000 12.81 0.00 42.88 4.00
2423 6234 1.200519 GTGCCCTAGACACACCCATA 58.799 55.000 10.07 0.00 37.96 2.74
2424 6235 1.557832 GTGCCCTAGACACACCCATAA 59.442 52.381 10.07 0.00 37.96 1.90
2425 6236 2.026636 GTGCCCTAGACACACCCATAAA 60.027 50.000 10.07 0.00 37.96 1.40
2426 6237 2.849943 TGCCCTAGACACACCCATAAAT 59.150 45.455 0.00 0.00 0.00 1.40
2427 6238 4.041464 TGCCCTAGACACACCCATAAATA 58.959 43.478 0.00 0.00 0.00 1.40
2428 6239 4.663120 TGCCCTAGACACACCCATAAATAT 59.337 41.667 0.00 0.00 0.00 1.28
2429 6240 5.847265 TGCCCTAGACACACCCATAAATATA 59.153 40.000 0.00 0.00 0.00 0.86
2633 6444 8.257602 TGGTATCTATAGTGACATTTAGCCAA 57.742 34.615 0.00 0.00 0.00 4.52
2774 6586 5.462398 CCTAATAATACTCTTGTCGGCACAC 59.538 44.000 0.00 0.00 29.76 3.82
2829 6641 6.582672 GGCTTATTGCTTCGGCTTTATTAATC 59.417 38.462 0.00 0.00 42.39 1.75
2910 6722 2.945668 GCATCTTCTGTGGGTTCATACC 59.054 50.000 0.00 0.00 44.22 2.73
3112 6925 4.081531 TCAAATTTGGCCTGCTATTCCTTG 60.082 41.667 17.90 0.00 0.00 3.61
3303 7116 0.471211 TCGGATGTATGACCTCCCCC 60.471 60.000 0.00 0.00 30.25 5.40
3323 7136 5.892119 CCCCCTTCCTTTCTTTTATCCTTAC 59.108 44.000 0.00 0.00 0.00 2.34
3524 7337 0.452184 GGTGATCGCGAACTCTGAGA 59.548 55.000 15.24 0.00 0.00 3.27
3685 7498 8.618702 TTCATGTTTATGAATGGCAAAACATT 57.381 26.923 19.36 7.34 45.77 2.71
3686 7499 9.716531 TTCATGTTTATGAATGGCAAAACATTA 57.283 25.926 19.36 12.27 45.77 1.90
3687 7500 9.149225 TCATGTTTATGAATGGCAAAACATTAC 57.851 29.630 19.36 13.16 41.17 1.89
3688 7501 9.153721 CATGTTTATGAATGGCAAAACATTACT 57.846 29.630 19.36 3.14 41.17 2.24
3689 7502 8.755696 TGTTTATGAATGGCAAAACATTACTC 57.244 30.769 9.68 0.61 40.92 2.59
3690 7503 7.816995 TGTTTATGAATGGCAAAACATTACTCC 59.183 33.333 9.68 0.00 40.92 3.85
3691 7504 7.716799 TTATGAATGGCAAAACATTACTCCT 57.283 32.000 9.03 0.00 40.92 3.69
3692 7505 6.610075 ATGAATGGCAAAACATTACTCCTT 57.390 33.333 0.00 0.00 40.92 3.36
3693 7506 6.024552 TGAATGGCAAAACATTACTCCTTC 57.975 37.500 0.00 0.00 40.92 3.46
3694 7507 5.047377 TGAATGGCAAAACATTACTCCTTCC 60.047 40.000 0.00 0.00 40.92 3.46
3695 7508 2.817258 TGGCAAAACATTACTCCTTCCG 59.183 45.455 0.00 0.00 0.00 4.30
3696 7509 2.817844 GGCAAAACATTACTCCTTCCGT 59.182 45.455 0.00 0.00 0.00 4.69
3697 7510 3.254903 GGCAAAACATTACTCCTTCCGTT 59.745 43.478 0.00 0.00 0.00 4.44
3698 7511 4.473199 GCAAAACATTACTCCTTCCGTTC 58.527 43.478 0.00 0.00 0.00 3.95
3699 7512 4.708601 CAAAACATTACTCCTTCCGTTCG 58.291 43.478 0.00 0.00 0.00 3.95
3700 7513 2.667473 ACATTACTCCTTCCGTTCGG 57.333 50.000 4.74 4.74 0.00 4.30
3701 7514 2.173519 ACATTACTCCTTCCGTTCGGA 58.826 47.619 10.00 10.00 0.00 4.55
3702 7515 2.564062 ACATTACTCCTTCCGTTCGGAA 59.436 45.455 22.42 22.42 41.48 4.30
3703 7516 3.197116 ACATTACTCCTTCCGTTCGGAAT 59.803 43.478 23.69 13.41 42.61 3.01
3704 7517 3.967332 TTACTCCTTCCGTTCGGAATT 57.033 42.857 23.69 12.73 42.61 2.17
3705 7518 5.105228 ACATTACTCCTTCCGTTCGGAATTA 60.105 40.000 23.69 14.90 42.61 1.40
3706 7519 3.242549 ACTCCTTCCGTTCGGAATTAC 57.757 47.619 23.69 0.00 42.61 1.89
3707 7520 2.830321 ACTCCTTCCGTTCGGAATTACT 59.170 45.455 23.69 7.58 42.61 2.24
3708 7521 3.260128 ACTCCTTCCGTTCGGAATTACTT 59.740 43.478 23.69 7.92 42.61 2.24
3709 7522 3.592059 TCCTTCCGTTCGGAATTACTTG 58.408 45.455 23.69 12.71 42.61 3.16
3710 7523 3.007182 TCCTTCCGTTCGGAATTACTTGT 59.993 43.478 23.69 0.00 42.61 3.16
3711 7524 3.370061 CCTTCCGTTCGGAATTACTTGTC 59.630 47.826 23.69 0.00 42.61 3.18
3712 7525 3.947910 TCCGTTCGGAATTACTTGTCT 57.052 42.857 11.66 0.00 0.00 3.41
3713 7526 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
3714 7527 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
3715 7528 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
3716 7529 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
3717 7530 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
3718 7531 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
3719 7532 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
3720 7533 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
3721 7534 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
3722 7535 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
3723 7536 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
3724 7537 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
3725 7538 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
3726 7539 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
3727 7540 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
3728 7541 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
3729 7542 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
3730 7543 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
3731 7544 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
3732 7545 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
3733 7546 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
3734 7547 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
3735 7548 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
3736 7549 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
3737 7550 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
3738 7551 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
3739 7552 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
3764 7577 6.604735 ACGTCTAGATACATCCATTTTTGC 57.395 37.500 0.00 0.00 0.00 3.68
3765 7578 5.234329 ACGTCTAGATACATCCATTTTTGCG 59.766 40.000 0.00 0.00 0.00 4.85
3766 7579 5.462068 CGTCTAGATACATCCATTTTTGCGA 59.538 40.000 0.00 0.00 0.00 5.10
3767 7580 6.562270 CGTCTAGATACATCCATTTTTGCGAC 60.562 42.308 0.00 0.00 0.00 5.19
3768 7581 6.257849 GTCTAGATACATCCATTTTTGCGACA 59.742 38.462 0.00 0.00 0.00 4.35
3769 7582 5.895636 AGATACATCCATTTTTGCGACAA 57.104 34.783 0.00 0.00 0.00 3.18
3770 7583 5.883661 AGATACATCCATTTTTGCGACAAG 58.116 37.500 0.00 0.00 0.00 3.16
3771 7584 5.415701 AGATACATCCATTTTTGCGACAAGT 59.584 36.000 0.00 0.00 0.00 3.16
3772 7585 6.597672 AGATACATCCATTTTTGCGACAAGTA 59.402 34.615 0.00 0.00 0.00 2.24
3773 7586 5.446143 ACATCCATTTTTGCGACAAGTAA 57.554 34.783 0.00 0.00 0.00 2.24
3774 7587 6.024552 ACATCCATTTTTGCGACAAGTAAT 57.975 33.333 0.00 0.00 0.00 1.89
3775 7588 6.454795 ACATCCATTTTTGCGACAAGTAATT 58.545 32.000 0.00 0.00 0.00 1.40
3776 7589 6.586082 ACATCCATTTTTGCGACAAGTAATTC 59.414 34.615 0.00 0.00 0.00 2.17
3777 7590 5.465935 TCCATTTTTGCGACAAGTAATTCC 58.534 37.500 0.00 0.00 0.00 3.01
3778 7591 4.323336 CCATTTTTGCGACAAGTAATTCCG 59.677 41.667 0.00 0.00 0.00 4.30
3779 7592 4.815040 TTTTTGCGACAAGTAATTCCGA 57.185 36.364 0.00 0.00 0.00 4.55
3780 7593 4.815040 TTTTGCGACAAGTAATTCCGAA 57.185 36.364 0.00 0.00 0.00 4.30
3781 7594 3.799137 TTGCGACAAGTAATTCCGAAC 57.201 42.857 0.00 0.00 0.00 3.95
3782 7595 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
3783 7596 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
3784 7597 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
3785 7598 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
3786 7599 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3787 7600 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3788 7601 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3789 7602 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3828 7641 9.826574 ATACAACATTGAACCTATACGTACAAT 57.173 29.630 0.00 0.00 0.00 2.71
3870 7683 9.131791 GATAAGGAAGTAGGCATAATTTTTCCA 57.868 33.333 12.02 0.00 36.06 3.53
4546 8363 6.282199 AGTGAGGATCTAGCGTTTTCTTAA 57.718 37.500 0.00 0.00 34.92 1.85
4549 8366 8.475639 AGTGAGGATCTAGCGTTTTCTTAATAA 58.524 33.333 0.00 0.00 34.92 1.40
4780 8597 5.471456 GTCATCATGAAATTACCAGCCTAGG 59.529 44.000 3.67 3.67 0.00 3.02
5215 9032 3.435327 TGTTCATTGTTGTGCCGATAGAC 59.565 43.478 0.00 0.00 39.76 2.59
5264 9081 4.583871 CCTTCTAACTGCACTGGAATCTT 58.416 43.478 0.00 0.00 0.00 2.40
5265 9082 4.633565 CCTTCTAACTGCACTGGAATCTTC 59.366 45.833 0.00 0.00 0.00 2.87
5343 9160 1.613437 GCTGGTGGTGCATACAACTTT 59.387 47.619 10.23 0.00 33.30 2.66
5524 9341 7.801547 ACATTTCATTTCAAAACAGCTATCG 57.198 32.000 0.00 0.00 0.00 2.92
5580 9397 9.997482 GTTGATTCAGTAAGTAGTTTTTGTCAA 57.003 29.630 0.00 0.00 0.00 3.18
5686 9504 1.466167 CATGCTGCTTCGTTGCTAGTT 59.534 47.619 0.00 0.00 0.00 2.24
6460 10279 3.117246 AGAACGAGGGGTATACATCTGGA 60.117 47.826 5.01 0.00 0.00 3.86
6612 10431 2.293318 TAGTGCCTGCTGGGAGGTG 61.293 63.158 12.06 0.00 37.23 4.00
6636 10455 6.944290 TGGGGATGCAAAGATTCTATATTCTG 59.056 38.462 0.00 0.00 0.00 3.02
6685 10552 1.051556 AGGGCCTTCTAGCTACTGGC 61.052 60.000 0.00 14.98 42.56 4.85
6725 10592 3.691118 TGGAGCTCACTGCATGTAAATTC 59.309 43.478 17.19 0.00 45.94 2.17
6761 10628 0.034337 TGGCAACCGTTACTCAGGAC 59.966 55.000 0.00 0.00 0.00 3.85
6806 10673 0.606401 ACCACAAGACCCAGATTGCG 60.606 55.000 0.00 0.00 0.00 4.85
6891 10758 5.947228 AAAGTTCTCTTGATCATTCGCAA 57.053 34.783 0.00 0.00 33.79 4.85
6892 10759 5.947228 AAGTTCTCTTGATCATTCGCAAA 57.053 34.783 0.00 0.00 32.09 3.68
6893 10760 6.506500 AAGTTCTCTTGATCATTCGCAAAT 57.493 33.333 0.00 0.00 32.09 2.32
6894 10761 5.877031 AGTTCTCTTGATCATTCGCAAATG 58.123 37.500 0.00 0.00 43.10 2.32
6895 10762 4.282950 TCTCTTGATCATTCGCAAATGC 57.717 40.909 0.00 0.00 41.76 3.56
6896 10763 3.943381 TCTCTTGATCATTCGCAAATGCT 59.057 39.130 0.00 0.00 41.76 3.79
6897 10764 5.118286 TCTCTTGATCATTCGCAAATGCTA 58.882 37.500 0.00 0.00 41.76 3.49
6898 10765 5.761726 TCTCTTGATCATTCGCAAATGCTAT 59.238 36.000 0.00 0.00 41.76 2.97
6899 10766 5.993891 TCTTGATCATTCGCAAATGCTATC 58.006 37.500 0.00 0.00 41.76 2.08
6900 10767 5.761726 TCTTGATCATTCGCAAATGCTATCT 59.238 36.000 0.00 0.00 41.76 1.98
6901 10768 6.930722 TCTTGATCATTCGCAAATGCTATCTA 59.069 34.615 0.00 0.00 41.76 1.98
6902 10769 7.605309 TCTTGATCATTCGCAAATGCTATCTAT 59.395 33.333 0.00 0.00 41.76 1.98
6903 10770 7.068692 TGATCATTCGCAAATGCTATCTATG 57.931 36.000 3.63 0.99 41.76 2.23
6904 10771 6.875195 TGATCATTCGCAAATGCTATCTATGA 59.125 34.615 3.63 5.76 41.76 2.15
6905 10772 6.471976 TCATTCGCAAATGCTATCTATGAC 57.528 37.500 3.63 0.00 41.76 3.06
6906 10773 5.990996 TCATTCGCAAATGCTATCTATGACA 59.009 36.000 3.63 0.00 41.76 3.58
6907 10774 5.912360 TTCGCAAATGCTATCTATGACAG 57.088 39.130 3.63 0.00 39.32 3.51
6908 10775 3.742882 TCGCAAATGCTATCTATGACAGC 59.257 43.478 3.63 0.00 39.32 4.40
6975 10860 5.515008 GGATTGAAGGGAGTAGGAAACTGTT 60.515 44.000 0.00 0.00 43.88 3.16
6976 10861 4.351874 TGAAGGGAGTAGGAAACTGTTG 57.648 45.455 0.00 0.00 43.88 3.33
6977 10862 3.714798 TGAAGGGAGTAGGAAACTGTTGT 59.285 43.478 0.00 0.00 43.88 3.32
6978 10863 4.903049 TGAAGGGAGTAGGAAACTGTTGTA 59.097 41.667 0.00 0.00 43.88 2.41
6979 10864 5.367352 TGAAGGGAGTAGGAAACTGTTGTAA 59.633 40.000 0.00 0.00 43.88 2.41
6980 10865 5.899631 AGGGAGTAGGAAACTGTTGTAAA 57.100 39.130 0.00 0.00 43.88 2.01
6981 10866 6.256643 AGGGAGTAGGAAACTGTTGTAAAA 57.743 37.500 0.00 0.00 43.88 1.52
6982 10867 6.849151 AGGGAGTAGGAAACTGTTGTAAAAT 58.151 36.000 0.00 0.00 43.88 1.82
6983 10868 7.981142 AGGGAGTAGGAAACTGTTGTAAAATA 58.019 34.615 0.00 0.00 43.88 1.40
6984 10869 8.612145 AGGGAGTAGGAAACTGTTGTAAAATAT 58.388 33.333 0.00 0.00 43.88 1.28
6985 10870 8.674607 GGGAGTAGGAAACTGTTGTAAAATATG 58.325 37.037 0.00 0.00 43.88 1.78
6986 10871 9.227777 GGAGTAGGAAACTGTTGTAAAATATGT 57.772 33.333 0.00 0.00 43.88 2.29
6988 10873 9.787435 AGTAGGAAACTGTTGTAAAATATGTGA 57.213 29.630 0.00 0.00 43.88 3.58
7112 11002 9.613428 ATGCACATAACACATATACTAAACACT 57.387 29.630 0.00 0.00 0.00 3.55
7122 11012 0.763035 ACTAAACACTCCCCGCAGTT 59.237 50.000 0.00 0.00 0.00 3.16
7153 11043 0.874390 GCGGTTGATGCAAAGACTGA 59.126 50.000 9.04 0.00 0.00 3.41
7216 11106 8.052141 TGGTCATGATATCTGTAAATTGTTGGA 58.948 33.333 0.00 0.00 0.00 3.53
7324 11214 2.287608 CGATGATGCACTAGGTTAGCGA 60.288 50.000 0.00 0.00 0.00 4.93
7366 11259 0.179073 GCAGTAGACCATCGTGGCAT 60.179 55.000 0.00 0.00 42.67 4.40
7454 11347 1.141881 CCGCACGATACTCAGCCTT 59.858 57.895 0.00 0.00 0.00 4.35
7537 11430 2.029623 GGTAGACACAATAGCCCGAGA 58.970 52.381 0.00 0.00 0.00 4.04
7540 11433 2.388735 AGACACAATAGCCCGAGATGA 58.611 47.619 0.00 0.00 0.00 2.92
7541 11434 2.363680 AGACACAATAGCCCGAGATGAG 59.636 50.000 0.00 0.00 0.00 2.90
7542 11435 2.101582 GACACAATAGCCCGAGATGAGT 59.898 50.000 0.00 0.00 0.00 3.41
7543 11436 2.159043 ACACAATAGCCCGAGATGAGTG 60.159 50.000 0.00 0.00 0.00 3.51
7544 11437 1.414181 ACAATAGCCCGAGATGAGTGG 59.586 52.381 0.00 0.00 0.00 4.00
7545 11438 1.051812 AATAGCCCGAGATGAGTGGG 58.948 55.000 0.00 0.00 46.22 4.61
7546 11439 0.833834 ATAGCCCGAGATGAGTGGGG 60.834 60.000 0.00 0.00 43.52 4.96
7547 11440 2.946988 TAGCCCGAGATGAGTGGGGG 62.947 65.000 0.00 0.00 43.52 5.40
7548 11441 2.365635 CCCGAGATGAGTGGGGGT 60.366 66.667 0.00 0.00 39.39 4.95
7549 11442 2.435693 CCCGAGATGAGTGGGGGTC 61.436 68.421 0.00 0.00 39.39 4.46
7550 11443 2.435693 CCGAGATGAGTGGGGGTCC 61.436 68.421 0.00 0.00 0.00 4.46
7551 11444 1.685765 CGAGATGAGTGGGGGTCCA 60.686 63.158 0.00 0.00 41.58 4.02
7552 11445 1.264749 CGAGATGAGTGGGGGTCCAA 61.265 60.000 0.00 0.00 46.04 3.53
7553 11446 0.543749 GAGATGAGTGGGGGTCCAAG 59.456 60.000 0.00 0.00 46.04 3.61
7554 11447 0.916358 AGATGAGTGGGGGTCCAAGG 60.916 60.000 0.00 0.00 46.04 3.61
7555 11448 1.151587 ATGAGTGGGGGTCCAAGGT 60.152 57.895 0.00 0.00 46.04 3.50
7556 11449 0.120377 ATGAGTGGGGGTCCAAGGTA 59.880 55.000 0.00 0.00 46.04 3.08
7557 11450 0.546747 TGAGTGGGGGTCCAAGGTAG 60.547 60.000 0.00 0.00 46.04 3.18
7558 11451 0.252558 GAGTGGGGGTCCAAGGTAGA 60.253 60.000 0.00 0.00 46.04 2.59
7559 11452 0.546988 AGTGGGGGTCCAAGGTAGAC 60.547 60.000 0.00 0.00 46.04 2.59
7560 11453 0.838987 GTGGGGGTCCAAGGTAGACA 60.839 60.000 0.00 0.00 46.04 3.41
7561 11454 0.838987 TGGGGGTCCAAGGTAGACAC 60.839 60.000 0.00 0.00 40.73 3.67
7562 11455 0.838987 GGGGGTCCAAGGTAGACACA 60.839 60.000 0.00 0.00 39.53 3.72
7563 11456 1.061546 GGGGTCCAAGGTAGACACAA 58.938 55.000 0.00 0.00 39.53 3.33
7564 11457 1.633945 GGGGTCCAAGGTAGACACAAT 59.366 52.381 0.00 0.00 39.53 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.293079 GCTTCTGTATCTCGCTCAGAATTTT 59.707 40.000 7.18 0.00 43.86 1.82
51 52 1.228154 GGTTTGCTTCGGTCCCACT 60.228 57.895 0.00 0.00 0.00 4.00
103 104 9.379791 CTAACCTAACTCGGACATAAATCTTTT 57.620 33.333 0.00 0.00 0.00 2.27
181 182 5.791666 CTCATCTATTTATGAGGCAGCTGA 58.208 41.667 20.43 0.00 46.07 4.26
209 210 4.807443 TGTGTGTTATTCAATCGACCGTA 58.193 39.130 0.00 0.00 0.00 4.02
278 279 9.289303 CGAAAAATGAGAGAAAAAGAACAAGAA 57.711 29.630 0.00 0.00 0.00 2.52
279 280 8.458843 ACGAAAAATGAGAGAAAAAGAACAAGA 58.541 29.630 0.00 0.00 0.00 3.02
290 291 4.628074 AGAACGGACGAAAAATGAGAGAA 58.372 39.130 0.00 0.00 0.00 2.87
408 421 2.626266 GGTGTTTTTGAGGACCCGAAAT 59.374 45.455 0.00 0.00 0.00 2.17
425 438 4.344865 AAGCAATCCGGCGGGTGT 62.345 61.111 27.98 9.98 39.27 4.16
453 469 3.842007 TGAAGGTGACCCGTCTAAAAA 57.158 42.857 0.00 0.00 39.69 1.94
457 473 0.599558 CGTTGAAGGTGACCCGTCTA 59.400 55.000 0.00 0.00 39.69 2.59
505 521 4.157289 ACGAACACGTCACTGTATATCCTT 59.843 41.667 0.00 0.00 35.22 3.36
512 528 1.830086 CACACGAACACGTCACTGTA 58.170 50.000 0.00 0.00 38.21 2.74
598 614 4.853743 GCTCCAAGTTCAAAACATCGATTC 59.146 41.667 0.00 0.00 0.00 2.52
602 618 3.624326 TGCTCCAAGTTCAAAACATCG 57.376 42.857 0.00 0.00 0.00 3.84
639 655 1.909376 CTTGCTACTGTACGTCGCAT 58.091 50.000 14.30 0.00 42.90 4.73
654 753 4.027724 CGATTTTGTTTTGGTTTGCTTGC 58.972 39.130 0.00 0.00 0.00 4.01
663 762 4.201580 GGCGCTATTTCGATTTTGTTTTGG 60.202 41.667 7.64 0.00 0.00 3.28
717 816 1.448013 GTGTCGGTTAGGCTCAGGC 60.448 63.158 0.00 0.00 37.82 4.85
719 818 0.737715 GCTGTGTCGGTTAGGCTCAG 60.738 60.000 0.00 0.00 45.78 3.35
720 819 1.185618 AGCTGTGTCGGTTAGGCTCA 61.186 55.000 0.00 0.00 0.00 4.26
721 820 0.458716 GAGCTGTGTCGGTTAGGCTC 60.459 60.000 0.00 0.00 39.14 4.70
722 821 1.592223 GAGCTGTGTCGGTTAGGCT 59.408 57.895 0.00 0.00 0.00 4.58
723 822 1.448013 GGAGCTGTGTCGGTTAGGC 60.448 63.158 0.00 0.00 0.00 3.93
724 823 1.153823 CGGAGCTGTGTCGGTTAGG 60.154 63.158 0.00 0.00 0.00 2.69
1771 2119 4.457603 TCATTAAATTAGTGCAACGCAGGT 59.542 37.500 0.00 0.00 45.86 4.00
1834 2182 1.762957 ACATGACCCCTCGGACATTAG 59.237 52.381 0.00 0.00 41.04 1.73
1936 5579 3.006323 CCAGAGGTTAAGGATCATCTCGG 59.994 52.174 0.00 0.00 0.00 4.63
2056 5707 2.185004 AGCTCCAAAATACAGTGCGT 57.815 45.000 0.00 0.00 0.00 5.24
2161 5812 8.856153 TTATTACTTGTCCAATAAAGCTGACA 57.144 30.769 0.00 0.00 36.04 3.58
2263 6074 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
2264 6075 6.483307 TGACTTAGATGTGCAATACTTATGGC 59.517 38.462 0.00 0.00 33.16 4.40
2265 6076 8.613060 ATGACTTAGATGTGCAATACTTATGG 57.387 34.615 0.00 0.00 0.00 2.74
2269 6080 9.265901 GACATATGACTTAGATGTGCAATACTT 57.734 33.333 10.38 0.00 41.09 2.24
2270 6081 8.424133 TGACATATGACTTAGATGTGCAATACT 58.576 33.333 10.38 0.00 41.09 2.12
2271 6082 8.593492 TGACATATGACTTAGATGTGCAATAC 57.407 34.615 10.38 0.00 41.09 1.89
2272 6083 9.783081 AATGACATATGACTTAGATGTGCAATA 57.217 29.630 10.38 0.00 41.09 1.90
2273 6084 8.565416 CAATGACATATGACTTAGATGTGCAAT 58.435 33.333 10.38 0.00 41.09 3.56
2274 6085 7.769970 TCAATGACATATGACTTAGATGTGCAA 59.230 33.333 10.38 0.00 41.09 4.08
2275 6086 7.274447 TCAATGACATATGACTTAGATGTGCA 58.726 34.615 10.38 0.00 41.09 4.57
2276 6087 7.719778 TCAATGACATATGACTTAGATGTGC 57.280 36.000 10.38 0.00 41.09 4.57
2277 6088 9.708092 AGATCAATGACATATGACTTAGATGTG 57.292 33.333 10.38 0.00 41.09 3.21
2311 6122 9.442047 AGAGAAAGAAAATATTCACACGAATCT 57.558 29.630 0.00 0.00 41.09 2.40
2345 6156 9.950680 GTGAGTGAATCAAACATAAAGAGAAAA 57.049 29.630 0.00 0.00 40.43 2.29
2346 6157 9.342308 AGTGAGTGAATCAAACATAAAGAGAAA 57.658 29.630 0.00 0.00 40.43 2.52
2347 6158 8.908786 AGTGAGTGAATCAAACATAAAGAGAA 57.091 30.769 0.00 0.00 40.43 2.87
2348 6159 8.908786 AAGTGAGTGAATCAAACATAAAGAGA 57.091 30.769 0.00 0.00 40.43 3.10
2350 6161 9.996554 TCTAAGTGAGTGAATCAAACATAAAGA 57.003 29.630 0.00 0.00 40.43 2.52
2353 6164 9.725019 ACATCTAAGTGAGTGAATCAAACATAA 57.275 29.630 0.00 0.00 40.43 1.90
2354 6165 9.154847 CACATCTAAGTGAGTGAATCAAACATA 57.845 33.333 0.00 0.00 42.05 2.29
2355 6166 7.361542 GCACATCTAAGTGAGTGAATCAAACAT 60.362 37.037 0.00 0.00 42.05 2.71
2356 6167 6.073058 GCACATCTAAGTGAGTGAATCAAACA 60.073 38.462 0.00 0.00 42.05 2.83
2357 6168 6.073058 TGCACATCTAAGTGAGTGAATCAAAC 60.073 38.462 0.00 0.00 42.05 2.93
2358 6169 5.997129 TGCACATCTAAGTGAGTGAATCAAA 59.003 36.000 0.00 0.00 42.05 2.69
2359 6170 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
2360 6171 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
2361 6172 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
2362 6173 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
2363 6174 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
2364 6175 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
2365 6176 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
2366 6177 7.268586 CCTAGTTATTGCACATCTAAGTGAGT 58.731 38.462 0.00 0.00 42.05 3.41
2367 6178 6.703607 CCCTAGTTATTGCACATCTAAGTGAG 59.296 42.308 0.00 0.00 42.05 3.51
2368 6179 6.582636 CCCTAGTTATTGCACATCTAAGTGA 58.417 40.000 0.00 0.00 42.05 3.41
2369 6180 5.237344 GCCCTAGTTATTGCACATCTAAGTG 59.763 44.000 0.00 0.00 42.37 3.16
2370 6181 5.104527 TGCCCTAGTTATTGCACATCTAAGT 60.105 40.000 0.00 0.00 0.00 2.24
2371 6182 5.368145 TGCCCTAGTTATTGCACATCTAAG 58.632 41.667 0.00 0.00 0.00 2.18
2372 6183 5.366482 TGCCCTAGTTATTGCACATCTAA 57.634 39.130 0.00 0.00 0.00 2.10
2374 6185 3.931907 TGCCCTAGTTATTGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
2379 6190 3.931907 AGATGTGCCCTAGTTATTGCA 57.068 42.857 0.00 0.00 0.00 4.08
2380 6191 5.215252 TCTAGATGTGCCCTAGTTATTGC 57.785 43.478 0.00 0.00 36.06 3.56
2395 6206 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
2396 6207 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
2397 6208 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
2398 6209 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
2399 6210 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
2400 6211 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
2401 6212 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
2402 6213 0.840288 TGGGTGTGTCTAGGGCACAT 60.840 55.000 18.92 0.00 46.66 3.21
2403 6214 0.840288 ATGGGTGTGTCTAGGGCACA 60.840 55.000 14.22 14.22 43.60 4.57
2404 6215 1.200519 TATGGGTGTGTCTAGGGCAC 58.799 55.000 10.20 10.20 37.37 5.01
2405 6216 1.959710 TTATGGGTGTGTCTAGGGCA 58.040 50.000 0.00 0.00 0.00 5.36
2406 6217 3.577805 ATTTATGGGTGTGTCTAGGGC 57.422 47.619 0.00 0.00 0.00 5.19
2407 6218 8.483758 GGTATATATTTATGGGTGTGTCTAGGG 58.516 40.741 0.00 0.00 0.00 3.53
2408 6219 9.042450 TGGTATATATTTATGGGTGTGTCTAGG 57.958 37.037 0.00 0.00 0.00 3.02
2415 6226 8.811994 GCCATTTTGGTATATATTTATGGGTGT 58.188 33.333 0.00 0.00 40.46 4.16
2416 6227 9.034800 AGCCATTTTGGTATATATTTATGGGTG 57.965 33.333 0.00 0.00 40.12 4.61
2417 6228 9.034800 CAGCCATTTTGGTATATATTTATGGGT 57.965 33.333 0.00 0.00 41.73 4.51
2418 6229 9.253832 TCAGCCATTTTGGTATATATTTATGGG 57.746 33.333 0.00 0.00 40.46 4.00
2426 6237 9.308000 CCCTATTTTCAGCCATTTTGGTATATA 57.692 33.333 0.00 0.00 40.46 0.86
2427 6238 8.010105 TCCCTATTTTCAGCCATTTTGGTATAT 58.990 33.333 0.00 0.00 40.46 0.86
2428 6239 7.358263 TCCCTATTTTCAGCCATTTTGGTATA 58.642 34.615 0.00 0.00 40.46 1.47
2429 6240 6.201591 TCCCTATTTTCAGCCATTTTGGTAT 58.798 36.000 0.00 0.00 40.46 2.73
2633 6444 7.912250 CGCTTAAAGCTTGATGAAAGTGATAAT 59.088 33.333 0.00 0.00 39.60 1.28
2670 6482 3.196207 ATGCGGTGCTTCCCACACT 62.196 57.895 0.00 0.00 46.50 3.55
2829 6641 6.957020 ACTTGACTTGGATATCTAGGGGATAG 59.043 42.308 2.05 0.00 39.89 2.08
3112 6925 3.244976 CATCAAAACTCATCCCAAACGC 58.755 45.455 0.00 0.00 0.00 4.84
3303 7116 7.244192 CGCAAGTAAGGATAAAAGAAAGGAAG 58.756 38.462 0.00 0.00 0.00 3.46
3323 7136 3.664025 GCAGTTTTACAGCTAAACGCAAG 59.336 43.478 15.87 6.71 42.61 4.01
3540 7353 9.217278 GTCTAGAATTTGAGCATACATCATCAT 57.783 33.333 0.00 0.00 0.00 2.45
3544 7357 6.100279 AGGGTCTAGAATTTGAGCATACATCA 59.900 38.462 0.00 0.00 32.93 3.07
3692 7505 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
3693 7506 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
3694 7507 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
3695 7508 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
3696 7509 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
3697 7510 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
3698 7511 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
3699 7512 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
3700 7513 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
3701 7514 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
3702 7515 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
3703 7516 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
3704 7517 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
3705 7518 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
3706 7519 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
3707 7520 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
3708 7521 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
3709 7522 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
3710 7523 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
3711 7524 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
3712 7525 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
3713 7526 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
3738 7551 8.774586 GCAAAAATGGATGTATCTAGACGTATT 58.225 33.333 0.00 0.00 0.00 1.89
3739 7552 7.116376 CGCAAAAATGGATGTATCTAGACGTAT 59.884 37.037 0.00 0.00 0.00 3.06
3740 7553 6.419710 CGCAAAAATGGATGTATCTAGACGTA 59.580 38.462 0.00 0.00 0.00 3.57
3741 7554 5.234329 CGCAAAAATGGATGTATCTAGACGT 59.766 40.000 0.00 0.00 0.00 4.34
3742 7555 5.462068 TCGCAAAAATGGATGTATCTAGACG 59.538 40.000 0.00 0.00 0.00 4.18
3743 7556 6.257849 TGTCGCAAAAATGGATGTATCTAGAC 59.742 38.462 0.00 0.00 0.00 2.59
3744 7557 6.345298 TGTCGCAAAAATGGATGTATCTAGA 58.655 36.000 0.00 0.00 0.00 2.43
3745 7558 6.603237 TGTCGCAAAAATGGATGTATCTAG 57.397 37.500 0.00 0.00 0.00 2.43
3746 7559 6.597672 ACTTGTCGCAAAAATGGATGTATCTA 59.402 34.615 0.00 0.00 0.00 1.98
3747 7560 5.415701 ACTTGTCGCAAAAATGGATGTATCT 59.584 36.000 0.00 0.00 0.00 1.98
3748 7561 5.640732 ACTTGTCGCAAAAATGGATGTATC 58.359 37.500 0.00 0.00 0.00 2.24
3749 7562 5.643379 ACTTGTCGCAAAAATGGATGTAT 57.357 34.783 0.00 0.00 0.00 2.29
3750 7563 6.561737 TTACTTGTCGCAAAAATGGATGTA 57.438 33.333 0.00 0.00 0.00 2.29
3751 7564 5.446143 TTACTTGTCGCAAAAATGGATGT 57.554 34.783 0.00 0.00 0.00 3.06
3752 7565 6.034898 GGAATTACTTGTCGCAAAAATGGATG 59.965 38.462 0.00 0.00 0.00 3.51
3753 7566 6.099341 GGAATTACTTGTCGCAAAAATGGAT 58.901 36.000 0.00 0.00 0.00 3.41
3754 7567 5.465935 GGAATTACTTGTCGCAAAAATGGA 58.534 37.500 0.00 0.00 0.00 3.41
3755 7568 4.323336 CGGAATTACTTGTCGCAAAAATGG 59.677 41.667 0.00 0.00 0.00 3.16
3756 7569 5.150683 TCGGAATTACTTGTCGCAAAAATG 58.849 37.500 0.00 0.00 0.00 2.32
3757 7570 5.365403 TCGGAATTACTTGTCGCAAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
3758 7571 4.815040 TCGGAATTACTTGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
3759 7572 4.529446 GTTCGGAATTACTTGTCGCAAAA 58.471 39.130 0.00 0.00 0.00 2.44
3760 7573 3.363182 CGTTCGGAATTACTTGTCGCAAA 60.363 43.478 0.00 0.00 0.00 3.68
3761 7574 2.156117 CGTTCGGAATTACTTGTCGCAA 59.844 45.455 0.00 0.00 0.00 4.85
3762 7575 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
3763 7576 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
3764 7577 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
3765 7578 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3766 7579 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3767 7580 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3768 7581 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3769 7582 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3770 7583 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3771 7584 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3772 7585 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
3773 7586 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
3774 7587 1.308069 CGTACTCCCTCCGTTCGGAA 61.308 60.000 14.79 0.04 33.41 4.30
3775 7588 1.746615 CGTACTCCCTCCGTTCGGA 60.747 63.158 13.34 13.34 0.00 4.55
3776 7589 1.986575 GACGTACTCCCTCCGTTCGG 61.987 65.000 4.74 4.74 34.51 4.30
3777 7590 1.023513 AGACGTACTCCCTCCGTTCG 61.024 60.000 0.00 0.00 34.51 3.95
3778 7591 0.450983 CAGACGTACTCCCTCCGTTC 59.549 60.000 0.00 0.00 34.51 3.95
3779 7592 0.251077 ACAGACGTACTCCCTCCGTT 60.251 55.000 0.00 0.00 34.51 4.44
3780 7593 0.615331 TACAGACGTACTCCCTCCGT 59.385 55.000 0.00 0.00 37.56 4.69
3781 7594 1.964552 ATACAGACGTACTCCCTCCG 58.035 55.000 0.00 0.00 0.00 4.63
3782 7595 6.000219 TGTATTATACAGACGTACTCCCTCC 59.000 44.000 0.29 0.00 34.06 4.30
3783 7596 7.012704 TGTTGTATTATACAGACGTACTCCCTC 59.987 40.741 5.17 0.00 40.24 4.30
3784 7597 6.830324 TGTTGTATTATACAGACGTACTCCCT 59.170 38.462 5.17 0.00 40.24 4.20
3785 7598 7.031226 TGTTGTATTATACAGACGTACTCCC 57.969 40.000 5.17 0.00 40.24 4.30
3786 7599 8.965172 CAATGTTGTATTATACAGACGTACTCC 58.035 37.037 5.17 0.00 40.24 3.85
3787 7600 9.726232 TCAATGTTGTATTATACAGACGTACTC 57.274 33.333 5.17 0.00 40.24 2.59
3822 7635 3.498397 CACTTCACCACCACAGATTGTAC 59.502 47.826 0.00 0.00 0.00 2.90
3828 7641 3.007940 CCTTATCACTTCACCACCACAGA 59.992 47.826 0.00 0.00 0.00 3.41
4546 8363 7.334858 TCAAAGGGTGAAACTTTTGCTTTTAT 58.665 30.769 0.00 0.00 39.46 1.40
4549 8366 5.159273 TCAAAGGGTGAAACTTTTGCTTT 57.841 34.783 0.00 0.00 39.46 3.51
5215 9032 7.699391 CAGCAAAACATTAGTTCATGGATGTAG 59.301 37.037 0.00 0.00 36.84 2.74
5343 9160 4.383770 GGTATACTTGAACTGCAGCCCTTA 60.384 45.833 15.27 0.00 0.00 2.69
5524 9341 6.622896 GCAACCACTGAAACTATCACCATAAC 60.623 42.308 0.00 0.00 33.47 1.89
5686 9504 3.754323 CACGTGTTGGAGGGCTTAAATTA 59.246 43.478 7.58 0.00 0.00 1.40
6460 10279 2.316372 ACTCCAGGGACTTAGGATCTGT 59.684 50.000 0.00 0.00 34.60 3.41
6612 10431 6.944862 ACAGAATATAGAATCTTTGCATCCCC 59.055 38.462 0.00 0.00 0.00 4.81
6636 10455 4.749245 AGCATACTAACTGTTGCACAAC 57.251 40.909 6.57 6.57 41.50 3.32
6650 10517 2.907042 GGCCCTACCTGAATAGCATACT 59.093 50.000 0.00 0.00 34.51 2.12
6725 10592 5.518487 GGTTGCCAATTATCATTACCGTTTG 59.482 40.000 0.00 0.00 0.00 2.93
6761 10628 1.128692 GAGCGTTCACTGGGAATTTCG 59.871 52.381 0.00 0.00 37.93 3.46
6806 10673 2.356135 TCTTTAGAAACTGCCATCCGC 58.644 47.619 0.00 0.00 38.31 5.54
6836 10703 6.344500 TGTACATGGCAGTTCATTTGTTTTT 58.656 32.000 0.00 0.00 0.00 1.94
6875 10742 4.288670 AGCATTTGCGAATGATCAAGAG 57.711 40.909 27.60 1.76 44.37 2.85
6894 10761 4.025647 GGAACGTTTGCTGTCATAGATAGC 60.026 45.833 0.46 8.56 44.97 2.97
6895 10762 5.352284 AGGAACGTTTGCTGTCATAGATAG 58.648 41.667 0.46 0.00 0.00 2.08
6896 10763 5.339008 AGGAACGTTTGCTGTCATAGATA 57.661 39.130 0.46 0.00 0.00 1.98
6897 10764 4.207891 AGGAACGTTTGCTGTCATAGAT 57.792 40.909 0.46 0.00 0.00 1.98
6898 10765 3.678056 AGGAACGTTTGCTGTCATAGA 57.322 42.857 0.46 0.00 0.00 1.98
6899 10766 3.120199 CCAAGGAACGTTTGCTGTCATAG 60.120 47.826 0.46 0.00 0.00 2.23
6900 10767 2.811431 CCAAGGAACGTTTGCTGTCATA 59.189 45.455 0.46 0.00 0.00 2.15
6901 10768 1.608590 CCAAGGAACGTTTGCTGTCAT 59.391 47.619 0.46 0.00 0.00 3.06
6902 10769 1.021202 CCAAGGAACGTTTGCTGTCA 58.979 50.000 0.46 0.00 0.00 3.58
6903 10770 0.310854 CCCAAGGAACGTTTGCTGTC 59.689 55.000 0.46 0.00 0.00 3.51
6904 10771 1.106944 CCCCAAGGAACGTTTGCTGT 61.107 55.000 0.46 0.00 33.47 4.40
6905 10772 0.821711 TCCCCAAGGAACGTTTGCTG 60.822 55.000 0.46 0.00 40.08 4.41
6906 10773 1.534697 TCCCCAAGGAACGTTTGCT 59.465 52.632 0.46 0.00 40.08 3.91
6907 10774 4.167597 TCCCCAAGGAACGTTTGC 57.832 55.556 0.46 0.00 40.08 3.68
6978 10863 8.677300 ACGAGAGCAATACAATTCACATATTTT 58.323 29.630 0.00 0.00 0.00 1.82
6979 10864 8.124823 CACGAGAGCAATACAATTCACATATTT 58.875 33.333 0.00 0.00 0.00 1.40
6980 10865 7.633621 CACGAGAGCAATACAATTCACATATT 58.366 34.615 0.00 0.00 0.00 1.28
6981 10866 6.293081 GCACGAGAGCAATACAATTCACATAT 60.293 38.462 0.00 0.00 0.00 1.78
6982 10867 5.006649 GCACGAGAGCAATACAATTCACATA 59.993 40.000 0.00 0.00 0.00 2.29
6983 10868 4.201851 GCACGAGAGCAATACAATTCACAT 60.202 41.667 0.00 0.00 0.00 3.21
6984 10869 3.125146 GCACGAGAGCAATACAATTCACA 59.875 43.478 0.00 0.00 0.00 3.58
6985 10870 3.125146 TGCACGAGAGCAATACAATTCAC 59.875 43.478 0.00 0.00 42.46 3.18
6986 10871 3.333804 TGCACGAGAGCAATACAATTCA 58.666 40.909 0.00 0.00 42.46 2.57
7106 10995 0.106918 TTCAACTGCGGGGAGTGTTT 60.107 50.000 0.00 0.00 0.00 2.83
7132 11022 0.602638 AGTCTTTGCATCAACCGCGA 60.603 50.000 8.23 0.00 0.00 5.87
7138 11028 1.879380 CCGGTTCAGTCTTTGCATCAA 59.121 47.619 0.00 0.00 0.00 2.57
7142 11032 1.134220 AGTTCCGGTTCAGTCTTTGCA 60.134 47.619 0.00 0.00 0.00 4.08
7153 11043 2.779506 GTCATTTGAGGAGTTCCGGTT 58.220 47.619 0.00 0.00 42.08 4.44
7324 11214 1.031029 GTCTCGGCGGTCTACCTCTT 61.031 60.000 7.21 0.00 0.00 2.85
7366 11259 0.397941 CTCTCTTGCCCTGTTGACCA 59.602 55.000 0.00 0.00 0.00 4.02
7454 11347 1.751351 CGGTCTCTCATTCCAGTGCTA 59.249 52.381 0.00 0.00 0.00 3.49
7482 11375 3.263503 CTCGTGGTCGTCCAAGCGA 62.264 63.158 12.37 12.37 46.15 4.93
7537 11430 0.120377 TACCTTGGACCCCCACTCAT 59.880 55.000 0.00 0.00 43.41 2.90
7540 11433 0.546988 GTCTACCTTGGACCCCCACT 60.547 60.000 0.00 0.00 43.41 4.00
7541 11434 0.838987 TGTCTACCTTGGACCCCCAC 60.839 60.000 0.00 0.00 43.41 4.61
7542 11435 0.838987 GTGTCTACCTTGGACCCCCA 60.839 60.000 0.00 0.00 41.64 4.96
7543 11436 0.838987 TGTGTCTACCTTGGACCCCC 60.839 60.000 0.00 0.00 33.22 5.40
7544 11437 1.061546 TTGTGTCTACCTTGGACCCC 58.938 55.000 0.00 0.00 33.22 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.