Multiple sequence alignment - TraesCS2A01G232300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G232300 chr2A 100.000 2607 0 0 1 2607 276272181 276274787 0.000000e+00 4815.0
1 TraesCS2A01G232300 chr2A 94.598 1851 79 3 603 2432 276261806 276263656 0.000000e+00 2844.0
2 TraesCS2A01G232300 chr2A 98.082 365 7 0 1 365 276261443 276261807 1.020000e-178 636.0
3 TraesCS2A01G232300 chr2A 95.868 242 10 0 363 604 84977770 84977529 2.430000e-105 392.0
4 TraesCS2A01G232300 chr2A 86.207 116 10 3 607 722 182637086 182636977 1.270000e-23 121.0
5 TraesCS2A01G232300 chr4A 94.505 1638 77 5 603 2230 387890454 387888820 0.000000e+00 2514.0
6 TraesCS2A01G232300 chr4A 94.505 1638 75 7 603 2230 387906380 387904748 0.000000e+00 2512.0
7 TraesCS2A01G232300 chr4A 78.412 1209 198 52 1258 2432 248563051 248564230 0.000000e+00 728.0
8 TraesCS2A01G232300 chr4A 77.622 1211 207 55 1258 2433 248573533 248574714 0.000000e+00 676.0
9 TraesCS2A01G232300 chr4A 97.808 365 8 0 1 365 387906743 387906379 4.730000e-177 630.0
10 TraesCS2A01G232300 chr4A 96.986 365 11 0 1 365 387890817 387890453 4.770000e-172 614.0
11 TraesCS2A01G232300 chr4A 93.846 260 11 4 359 615 109428090 109427833 1.130000e-103 387.0
12 TraesCS2A01G232300 chr4A 96.045 177 6 1 2255 2431 387904764 387904589 1.180000e-73 287.0
13 TraesCS2A01G232300 chr4A 95.480 177 7 1 2255 2431 387898788 387898613 5.490000e-72 281.0
14 TraesCS2A01G232300 chr5A 89.930 1579 122 25 603 2153 122232365 122230796 0.000000e+00 2001.0
15 TraesCS2A01G232300 chr5A 92.877 365 24 2 1 365 122232726 122232364 1.780000e-146 529.0
16 TraesCS2A01G232300 chr5A 84.358 537 61 19 1921 2447 427181375 427181898 2.990000e-139 505.0
17 TraesCS2A01G232300 chr5A 94.422 251 14 0 357 607 673143860 673144110 1.130000e-103 387.0
18 TraesCS2A01G232300 chr5A 94.779 249 12 1 356 604 677940385 677940632 1.130000e-103 387.0
19 TraesCS2A01G232300 chr3A 91.968 996 71 9 1158 2153 424959603 424958617 0.000000e+00 1387.0
20 TraesCS2A01G232300 chr3A 92.205 975 69 7 1179 2153 424969185 424968218 0.000000e+00 1373.0
21 TraesCS2A01G232300 chr3A 91.475 434 30 6 1800 2231 530660095 530659667 8.040000e-165 590.0
22 TraesCS2A01G232300 chr3A 88.981 363 32 8 1 360 177763005 177763362 2.380000e-120 442.0
23 TraesCS2A01G232300 chr3A 88.736 364 35 5 1 361 96255861 96255501 8.560000e-120 440.0
24 TraesCS2A01G232300 chr3A 94.094 254 15 0 354 607 457673475 457673222 1.130000e-103 387.0
25 TraesCS2A01G232300 chr7A 87.533 1147 96 31 1306 2432 526160218 526161337 0.000000e+00 1282.0
26 TraesCS2A01G232300 chr7A 92.627 651 43 5 1783 2432 317437484 317438130 0.000000e+00 931.0
27 TraesCS2A01G232300 chr7A 92.496 653 44 5 1781 2432 327111667 327112315 0.000000e+00 929.0
28 TraesCS2A01G232300 chr7A 79.507 1054 174 36 1166 2195 327121037 327122072 0.000000e+00 712.0
29 TraesCS2A01G232300 chr7A 95.455 242 11 0 363 604 699150274 699150515 1.130000e-103 387.0
30 TraesCS2A01G232300 chr7A 94.758 248 12 1 358 605 293097286 293097040 4.070000e-103 385.0
31 TraesCS2A01G232300 chr7A 94.400 250 13 1 356 604 722869191 722869440 1.460000e-102 383.0
32 TraesCS2A01G232300 chr6D 79.400 1466 204 69 729 2146 229502723 229504138 0.000000e+00 944.0
33 TraesCS2A01G232300 chr6D 84.404 327 42 1 693 1010 233210806 233211132 1.950000e-81 313.0
34 TraesCS2A01G232300 chr6D 93.421 76 1 2 607 680 229502409 229502482 2.740000e-20 110.0
35 TraesCS2A01G232300 chr6B 82.403 1057 142 26 709 1743 109760456 109759422 0.000000e+00 881.0
36 TraesCS2A01G232300 chr6B 82.640 962 127 22 786 1728 109770235 109769295 0.000000e+00 815.0
37 TraesCS2A01G232300 chr2B 81.847 931 124 30 821 1728 309294752 309293844 0.000000e+00 741.0
38 TraesCS2A01G232300 chr2B 82.271 863 118 24 895 1743 309304772 309303931 0.000000e+00 713.0
39 TraesCS2A01G232300 chr2B 95.455 242 11 0 363 604 235906876 235906635 1.130000e-103 387.0
40 TraesCS2A01G232300 chr1B 80.987 952 133 32 817 1743 476560428 476559500 0.000000e+00 712.0
41 TraesCS2A01G232300 chr3B 85.463 681 75 9 695 1365 480284012 480284678 0.000000e+00 688.0
42 TraesCS2A01G232300 chr3B 85.022 681 78 9 695 1365 480294202 480294868 0.000000e+00 671.0
43 TraesCS2A01G232300 chr3B 85.471 647 65 16 695 1330 266946364 266945736 0.000000e+00 647.0
44 TraesCS2A01G232300 chr5B 82.526 681 73 16 695 1365 542083200 542082556 8.150000e-155 556.0
45 TraesCS2A01G232300 chr6A 81.924 603 84 22 1842 2432 165605532 165604943 1.080000e-133 486.0
46 TraesCS2A01G232300 chr6A 88.705 363 35 5 1 361 262227109 262227467 3.080000e-119 438.0
47 TraesCS2A01G232300 chr6A 84.956 113 11 3 607 719 259596579 259596473 2.740000e-20 110.0
48 TraesCS2A01G232300 chr6A 86.735 98 8 4 623 719 259610884 259610791 1.280000e-18 104.0
49 TraesCS2A01G232300 chr4B 82.523 555 68 16 817 1356 196805338 196805878 6.570000e-126 460.0
50 TraesCS2A01G232300 chr4B 81.601 587 76 19 787 1356 196795237 196795808 8.500000e-125 457.0
51 TraesCS2A01G232300 chr1A 89.256 363 35 4 1 361 223719578 223719938 3.960000e-123 451.0
52 TraesCS2A01G232300 chr1A 89.577 355 31 5 1 353 452174189 452174539 1.840000e-121 446.0
53 TraesCS2A01G232300 chr1D 93.143 175 12 0 2433 2607 447336426 447336252 9.260000e-65 257.0
54 TraesCS2A01G232300 chrUn 92.000 175 14 0 2433 2607 283232001 283231827 2.000000e-61 246.0
55 TraesCS2A01G232300 chrUn 92.000 175 14 0 2433 2607 383137396 383137570 2.000000e-61 246.0
56 TraesCS2A01G232300 chrUn 90.116 172 17 0 2436 2607 59614582 59614411 9.390000e-55 224.0
57 TraesCS2A01G232300 chr2D 91.279 172 15 0 2436 2607 473172017 473172188 4.340000e-58 235.0
58 TraesCS2A01G232300 chr7D 89.560 182 19 0 2426 2607 48845563 48845744 5.610000e-57 231.0
59 TraesCS2A01G232300 chr7D 89.714 175 18 0 2433 2607 198016646 198016820 9.390000e-55 224.0
60 TraesCS2A01G232300 chr7D 88.462 182 21 0 2426 2607 204880291 204880472 1.210000e-53 220.0
61 TraesCS2A01G232300 chr4D 90.698 172 16 0 2436 2607 243710862 243711033 2.020000e-56 230.0
62 TraesCS2A01G232300 chr4D 92.754 69 3 1 939 1007 228498707 228498773 5.940000e-17 99.0
63 TraesCS2A01G232300 chr4D 79.365 126 18 6 601 724 192649367 192649486 5.980000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G232300 chr2A 276272181 276274787 2606 False 4815 4815 100.000000 1 2607 1 chr2A.!!$F1 2606
1 TraesCS2A01G232300 chr2A 276261443 276263656 2213 False 1740 2844 96.340000 1 2432 2 chr2A.!!$F2 2431
2 TraesCS2A01G232300 chr4A 387888820 387890817 1997 True 1564 2514 95.745500 1 2230 2 chr4A.!!$R3 2229
3 TraesCS2A01G232300 chr4A 387904589 387906743 2154 True 1143 2512 96.119333 1 2431 3 chr4A.!!$R4 2430
4 TraesCS2A01G232300 chr4A 248563051 248564230 1179 False 728 728 78.412000 1258 2432 1 chr4A.!!$F1 1174
5 TraesCS2A01G232300 chr4A 248573533 248574714 1181 False 676 676 77.622000 1258 2433 1 chr4A.!!$F2 1175
6 TraesCS2A01G232300 chr5A 122230796 122232726 1930 True 1265 2001 91.403500 1 2153 2 chr5A.!!$R1 2152
7 TraesCS2A01G232300 chr5A 427181375 427181898 523 False 505 505 84.358000 1921 2447 1 chr5A.!!$F1 526
8 TraesCS2A01G232300 chr3A 424958617 424959603 986 True 1387 1387 91.968000 1158 2153 1 chr3A.!!$R2 995
9 TraesCS2A01G232300 chr3A 424968218 424969185 967 True 1373 1373 92.205000 1179 2153 1 chr3A.!!$R3 974
10 TraesCS2A01G232300 chr7A 526160218 526161337 1119 False 1282 1282 87.533000 1306 2432 1 chr7A.!!$F4 1126
11 TraesCS2A01G232300 chr7A 317437484 317438130 646 False 931 931 92.627000 1783 2432 1 chr7A.!!$F1 649
12 TraesCS2A01G232300 chr7A 327111667 327112315 648 False 929 929 92.496000 1781 2432 1 chr7A.!!$F2 651
13 TraesCS2A01G232300 chr7A 327121037 327122072 1035 False 712 712 79.507000 1166 2195 1 chr7A.!!$F3 1029
14 TraesCS2A01G232300 chr6D 229502409 229504138 1729 False 527 944 86.410500 607 2146 2 chr6D.!!$F2 1539
15 TraesCS2A01G232300 chr6B 109759422 109760456 1034 True 881 881 82.403000 709 1743 1 chr6B.!!$R1 1034
16 TraesCS2A01G232300 chr6B 109769295 109770235 940 True 815 815 82.640000 786 1728 1 chr6B.!!$R2 942
17 TraesCS2A01G232300 chr2B 309293844 309294752 908 True 741 741 81.847000 821 1728 1 chr2B.!!$R2 907
18 TraesCS2A01G232300 chr2B 309303931 309304772 841 True 713 713 82.271000 895 1743 1 chr2B.!!$R3 848
19 TraesCS2A01G232300 chr1B 476559500 476560428 928 True 712 712 80.987000 817 1743 1 chr1B.!!$R1 926
20 TraesCS2A01G232300 chr3B 480284012 480284678 666 False 688 688 85.463000 695 1365 1 chr3B.!!$F1 670
21 TraesCS2A01G232300 chr3B 480294202 480294868 666 False 671 671 85.022000 695 1365 1 chr3B.!!$F2 670
22 TraesCS2A01G232300 chr3B 266945736 266946364 628 True 647 647 85.471000 695 1330 1 chr3B.!!$R1 635
23 TraesCS2A01G232300 chr5B 542082556 542083200 644 True 556 556 82.526000 695 1365 1 chr5B.!!$R1 670
24 TraesCS2A01G232300 chr6A 165604943 165605532 589 True 486 486 81.924000 1842 2432 1 chr6A.!!$R1 590
25 TraesCS2A01G232300 chr4B 196805338 196805878 540 False 460 460 82.523000 817 1356 1 chr4B.!!$F2 539
26 TraesCS2A01G232300 chr4B 196795237 196795808 571 False 457 457 81.601000 787 1356 1 chr4B.!!$F1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 460 0.038709 CAATTGCGGCGGGAGAAAAA 60.039 50.0 9.78 0.0 0.0 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2457 2802 0.108756 GTGTCTCCCAGGTTCGCTAC 60.109 60.0 0.0 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
248 249 4.688879 GTGCAATAAGTTAAAAACTGCCCC 59.311 41.667 0.00 0.00 41.91 5.80
271 272 6.324512 CCCAAATGGAATATGTCAGAATTGGA 59.675 38.462 0.00 0.00 37.39 3.53
365 366 7.873505 AGGAATATTCGCTGGACTAAAAGATAC 59.126 37.037 9.32 0.00 0.00 2.24
366 367 7.873505 GGAATATTCGCTGGACTAAAAGATACT 59.126 37.037 9.32 0.00 0.00 2.12
367 368 8.819643 AATATTCGCTGGACTAAAAGATACTC 57.180 34.615 0.00 0.00 0.00 2.59
368 369 4.650754 TCGCTGGACTAAAAGATACTCC 57.349 45.455 0.00 0.00 0.00 3.85
369 370 3.383825 TCGCTGGACTAAAAGATACTCCC 59.616 47.826 0.00 0.00 0.00 4.30
370 371 3.385111 CGCTGGACTAAAAGATACTCCCT 59.615 47.826 0.00 0.00 0.00 4.20
371 372 4.500035 CGCTGGACTAAAAGATACTCCCTC 60.500 50.000 0.00 0.00 0.00 4.30
372 373 4.406003 GCTGGACTAAAAGATACTCCCTCA 59.594 45.833 0.00 0.00 0.00 3.86
373 374 5.104900 GCTGGACTAAAAGATACTCCCTCAA 60.105 44.000 0.00 0.00 0.00 3.02
374 375 6.408662 GCTGGACTAAAAGATACTCCCTCAAT 60.409 42.308 0.00 0.00 0.00 2.57
375 376 7.510675 TGGACTAAAAGATACTCCCTCAATT 57.489 36.000 0.00 0.00 0.00 2.32
376 377 7.565680 TGGACTAAAAGATACTCCCTCAATTC 58.434 38.462 0.00 0.00 0.00 2.17
377 378 6.993308 GGACTAAAAGATACTCCCTCAATTCC 59.007 42.308 0.00 0.00 0.00 3.01
378 379 7.365652 GGACTAAAAGATACTCCCTCAATTCCA 60.366 40.741 0.00 0.00 0.00 3.53
379 380 7.928873 ACTAAAAGATACTCCCTCAATTCCAA 58.071 34.615 0.00 0.00 0.00 3.53
380 381 8.390921 ACTAAAAGATACTCCCTCAATTCCAAA 58.609 33.333 0.00 0.00 0.00 3.28
381 382 9.243105 CTAAAAGATACTCCCTCAATTCCAAAA 57.757 33.333 0.00 0.00 0.00 2.44
382 383 8.670521 AAAAGATACTCCCTCAATTCCAAAAT 57.329 30.769 0.00 0.00 0.00 1.82
383 384 9.768215 AAAAGATACTCCCTCAATTCCAAAATA 57.232 29.630 0.00 0.00 0.00 1.40
384 385 9.942526 AAAGATACTCCCTCAATTCCAAAATAT 57.057 29.630 0.00 0.00 0.00 1.28
388 389 9.799106 ATACTCCCTCAATTCCAAAATATAGTG 57.201 33.333 0.00 0.00 0.00 2.74
389 390 6.547510 ACTCCCTCAATTCCAAAATATAGTGC 59.452 38.462 0.00 0.00 0.00 4.40
390 391 5.530915 TCCCTCAATTCCAAAATATAGTGCG 59.469 40.000 0.00 0.00 0.00 5.34
391 392 5.215160 CCTCAATTCCAAAATATAGTGCGC 58.785 41.667 0.00 0.00 0.00 6.09
392 393 5.181690 TCAATTCCAAAATATAGTGCGCC 57.818 39.130 4.18 0.00 0.00 6.53
393 394 4.887071 TCAATTCCAAAATATAGTGCGCCT 59.113 37.500 4.18 3.99 0.00 5.52
394 395 4.836125 ATTCCAAAATATAGTGCGCCTG 57.164 40.909 4.18 0.00 0.00 4.85
395 396 1.946768 TCCAAAATATAGTGCGCCTGC 59.053 47.619 4.18 0.00 43.20 4.85
408 409 2.815647 CCTGCGCTTTCCGAGGTC 60.816 66.667 9.73 0.00 40.02 3.85
409 410 2.815647 CTGCGCTTTCCGAGGTCC 60.816 66.667 9.73 0.00 40.02 4.46
410 411 3.589654 CTGCGCTTTCCGAGGTCCA 62.590 63.158 9.73 0.00 40.02 4.02
411 412 2.358247 GCGCTTTCCGAGGTCCAA 60.358 61.111 0.00 0.00 40.02 3.53
412 413 2.677979 GCGCTTTCCGAGGTCCAAC 61.678 63.158 0.00 0.00 40.02 3.77
413 414 1.004918 CGCTTTCCGAGGTCCAACT 60.005 57.895 0.00 0.00 40.02 3.16
414 415 0.602905 CGCTTTCCGAGGTCCAACTT 60.603 55.000 0.00 0.00 40.02 2.66
415 416 1.605753 GCTTTCCGAGGTCCAACTTT 58.394 50.000 0.00 0.00 0.00 2.66
416 417 1.266989 GCTTTCCGAGGTCCAACTTTG 59.733 52.381 0.00 0.00 0.00 2.77
417 418 2.846193 CTTTCCGAGGTCCAACTTTGA 58.154 47.619 0.00 0.00 0.00 2.69
418 419 2.249844 TTCCGAGGTCCAACTTTGAC 57.750 50.000 0.00 0.00 0.00 3.18
419 420 1.420430 TCCGAGGTCCAACTTTGACT 58.580 50.000 0.00 0.00 0.00 3.41
420 421 2.600790 TCCGAGGTCCAACTTTGACTA 58.399 47.619 0.00 0.00 0.00 2.59
421 422 3.170717 TCCGAGGTCCAACTTTGACTAT 58.829 45.455 0.00 0.00 0.00 2.12
422 423 4.346730 TCCGAGGTCCAACTTTGACTATA 58.653 43.478 0.00 0.00 0.00 1.31
423 424 4.773674 TCCGAGGTCCAACTTTGACTATAA 59.226 41.667 0.00 0.00 0.00 0.98
424 425 5.246656 TCCGAGGTCCAACTTTGACTATAAA 59.753 40.000 0.00 0.00 0.00 1.40
425 426 6.070424 TCCGAGGTCCAACTTTGACTATAAAT 60.070 38.462 0.00 0.00 0.00 1.40
426 427 6.598064 CCGAGGTCCAACTTTGACTATAAATT 59.402 38.462 0.00 0.00 0.00 1.82
427 428 7.120726 CCGAGGTCCAACTTTGACTATAAATTT 59.879 37.037 0.00 0.00 0.00 1.82
428 429 9.158233 CGAGGTCCAACTTTGACTATAAATTTA 57.842 33.333 0.00 0.00 0.00 1.40
431 432 9.850628 GGTCCAACTTTGACTATAAATTTAACC 57.149 33.333 1.21 0.00 0.00 2.85
440 441 8.483307 TGACTATAAATTTAACCAACGAGACC 57.517 34.615 1.21 0.00 0.00 3.85
441 442 8.095792 TGACTATAAATTTAACCAACGAGACCA 58.904 33.333 1.21 0.00 0.00 4.02
442 443 8.851541 ACTATAAATTTAACCAACGAGACCAA 57.148 30.769 1.21 0.00 0.00 3.67
443 444 9.457436 ACTATAAATTTAACCAACGAGACCAAT 57.543 29.630 1.21 0.00 0.00 3.16
445 446 8.980143 ATAAATTTAACCAACGAGACCAATTG 57.020 30.769 1.21 0.00 0.00 2.32
446 447 3.907894 TTAACCAACGAGACCAATTGC 57.092 42.857 0.00 0.00 0.00 3.56
447 448 0.591170 AACCAACGAGACCAATTGCG 59.409 50.000 0.00 0.47 0.00 4.85
448 449 1.234615 ACCAACGAGACCAATTGCGG 61.235 55.000 0.00 0.00 0.00 5.69
449 450 1.154225 CAACGAGACCAATTGCGGC 60.154 57.895 0.00 0.00 0.00 6.53
450 451 2.677003 AACGAGACCAATTGCGGCG 61.677 57.895 0.51 0.51 0.00 6.46
451 452 3.864686 CGAGACCAATTGCGGCGG 61.865 66.667 9.78 0.00 0.00 6.13
452 453 3.508840 GAGACCAATTGCGGCGGG 61.509 66.667 9.78 2.79 0.00 6.13
453 454 3.969250 GAGACCAATTGCGGCGGGA 62.969 63.158 9.78 0.00 0.00 5.14
454 455 3.508840 GACCAATTGCGGCGGGAG 61.509 66.667 9.78 0.00 0.00 4.30
455 456 3.969250 GACCAATTGCGGCGGGAGA 62.969 63.158 9.78 0.00 0.00 3.71
456 457 2.749839 CCAATTGCGGCGGGAGAA 60.750 61.111 9.78 0.00 0.00 2.87
457 458 2.339556 CCAATTGCGGCGGGAGAAA 61.340 57.895 9.78 0.00 0.00 2.52
458 459 1.583986 CAATTGCGGCGGGAGAAAA 59.416 52.632 9.78 0.00 0.00 2.29
459 460 0.038709 CAATTGCGGCGGGAGAAAAA 60.039 50.000 9.78 0.00 0.00 1.94
514 515 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
515 516 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
516 517 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
517 518 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
518 519 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
519 520 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
520 521 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
521 522 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
522 523 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
523 524 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
524 525 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
525 526 2.093537 TTTTTGCTCCCGCCGCAATT 62.094 50.000 5.33 0.00 45.67 2.32
526 527 2.762006 TTTTGCTCCCGCCGCAATTG 62.762 55.000 0.00 0.00 45.67 2.32
529 530 3.508840 CTCCCGCCGCAATTGGTC 61.509 66.667 7.72 0.00 0.00 4.02
530 531 3.976701 CTCCCGCCGCAATTGGTCT 62.977 63.158 7.72 0.00 0.00 3.85
531 532 3.061848 CCCGCCGCAATTGGTCTT 61.062 61.111 7.72 0.00 0.00 3.01
532 533 2.179018 CCGCCGCAATTGGTCTTG 59.821 61.111 7.72 0.00 0.00 3.02
533 534 2.179018 CGCCGCAATTGGTCTTGG 59.821 61.111 7.72 0.00 0.00 3.61
534 535 2.625823 CGCCGCAATTGGTCTTGGT 61.626 57.895 7.72 0.00 0.00 3.67
535 536 1.302383 CGCCGCAATTGGTCTTGGTA 61.302 55.000 7.72 0.00 0.00 3.25
536 537 0.451783 GCCGCAATTGGTCTTGGTAG 59.548 55.000 7.72 0.00 0.00 3.18
537 538 1.821216 CCGCAATTGGTCTTGGTAGT 58.179 50.000 7.72 0.00 0.00 2.73
538 539 2.159382 CCGCAATTGGTCTTGGTAGTT 58.841 47.619 7.72 0.00 0.00 2.24
539 540 3.340034 CCGCAATTGGTCTTGGTAGTTA 58.660 45.455 7.72 0.00 0.00 2.24
540 541 3.754323 CCGCAATTGGTCTTGGTAGTTAA 59.246 43.478 7.72 0.00 0.00 2.01
541 542 4.216687 CCGCAATTGGTCTTGGTAGTTAAA 59.783 41.667 7.72 0.00 0.00 1.52
542 543 5.105917 CCGCAATTGGTCTTGGTAGTTAAAT 60.106 40.000 7.72 0.00 0.00 1.40
543 544 6.386654 CGCAATTGGTCTTGGTAGTTAAATT 58.613 36.000 7.72 0.00 0.00 1.82
544 545 6.866248 CGCAATTGGTCTTGGTAGTTAAATTT 59.134 34.615 7.72 0.00 0.00 1.82
545 546 8.024285 CGCAATTGGTCTTGGTAGTTAAATTTA 58.976 33.333 7.72 0.00 0.00 1.40
546 547 9.135843 GCAATTGGTCTTGGTAGTTAAATTTAC 57.864 33.333 7.72 0.00 0.00 2.01
547 548 9.337091 CAATTGGTCTTGGTAGTTAAATTTACG 57.663 33.333 0.00 0.00 0.00 3.18
548 549 7.437793 TTGGTCTTGGTAGTTAAATTTACGG 57.562 36.000 0.00 0.00 0.00 4.02
549 550 6.532826 TGGTCTTGGTAGTTAAATTTACGGT 58.467 36.000 0.00 0.00 0.00 4.83
550 551 6.650390 TGGTCTTGGTAGTTAAATTTACGGTC 59.350 38.462 0.00 0.00 0.00 4.79
551 552 6.650390 GGTCTTGGTAGTTAAATTTACGGTCA 59.350 38.462 0.00 0.00 0.00 4.02
552 553 7.173047 GGTCTTGGTAGTTAAATTTACGGTCAA 59.827 37.037 0.00 0.00 0.00 3.18
553 554 8.558700 GTCTTGGTAGTTAAATTTACGGTCAAA 58.441 33.333 0.00 0.00 0.00 2.69
554 555 8.776470 TCTTGGTAGTTAAATTTACGGTCAAAG 58.224 33.333 0.00 0.00 0.00 2.77
555 556 8.449251 TTGGTAGTTAAATTTACGGTCAAAGT 57.551 30.769 0.00 0.00 0.00 2.66
556 557 8.449251 TGGTAGTTAAATTTACGGTCAAAGTT 57.551 30.769 0.00 0.00 31.36 2.66
557 558 8.344098 TGGTAGTTAAATTTACGGTCAAAGTTG 58.656 33.333 0.00 0.00 29.44 3.16
558 559 8.558700 GGTAGTTAAATTTACGGTCAAAGTTGA 58.441 33.333 0.00 0.00 34.20 3.18
559 560 9.934190 GTAGTTAAATTTACGGTCAAAGTTGAA 57.066 29.630 0.00 0.00 39.21 2.69
561 562 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
562 563 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
563 564 4.545823 TTTACGGTCAAAGTTGAAGCAG 57.454 40.909 0.00 0.00 39.21 4.24
564 565 1.308998 ACGGTCAAAGTTGAAGCAGG 58.691 50.000 0.00 0.00 39.21 4.85
565 566 1.308998 CGGTCAAAGTTGAAGCAGGT 58.691 50.000 0.00 0.00 39.21 4.00
566 567 1.002468 CGGTCAAAGTTGAAGCAGGTG 60.002 52.381 0.00 0.00 39.21 4.00
567 568 1.338020 GGTCAAAGTTGAAGCAGGTGG 59.662 52.381 0.00 0.00 39.21 4.61
568 569 2.297701 GTCAAAGTTGAAGCAGGTGGA 58.702 47.619 0.00 0.00 39.21 4.02
569 570 2.887152 GTCAAAGTTGAAGCAGGTGGAT 59.113 45.455 0.00 0.00 39.21 3.41
570 571 4.072131 GTCAAAGTTGAAGCAGGTGGATA 58.928 43.478 0.00 0.00 39.21 2.59
571 572 4.702131 GTCAAAGTTGAAGCAGGTGGATAT 59.298 41.667 0.00 0.00 39.21 1.63
572 573 5.880332 GTCAAAGTTGAAGCAGGTGGATATA 59.120 40.000 0.00 0.00 39.21 0.86
573 574 6.037610 GTCAAAGTTGAAGCAGGTGGATATAG 59.962 42.308 0.00 0.00 39.21 1.31
574 575 4.696479 AGTTGAAGCAGGTGGATATAGG 57.304 45.455 0.00 0.00 0.00 2.57
575 576 4.298626 AGTTGAAGCAGGTGGATATAGGA 58.701 43.478 0.00 0.00 0.00 2.94
576 577 4.721776 AGTTGAAGCAGGTGGATATAGGAA 59.278 41.667 0.00 0.00 0.00 3.36
577 578 4.963318 TGAAGCAGGTGGATATAGGAAG 57.037 45.455 0.00 0.00 0.00 3.46
578 579 3.071602 TGAAGCAGGTGGATATAGGAAGC 59.928 47.826 0.00 0.00 0.00 3.86
579 580 2.694397 AGCAGGTGGATATAGGAAGCA 58.306 47.619 0.00 0.00 0.00 3.91
580 581 2.370189 AGCAGGTGGATATAGGAAGCAC 59.630 50.000 0.00 0.00 0.00 4.40
581 582 2.370189 GCAGGTGGATATAGGAAGCACT 59.630 50.000 0.00 0.00 0.00 4.40
582 583 3.578716 GCAGGTGGATATAGGAAGCACTA 59.421 47.826 0.00 0.00 0.00 2.74
583 584 4.561734 GCAGGTGGATATAGGAAGCACTAC 60.562 50.000 0.00 0.00 0.00 2.73
584 585 4.588951 CAGGTGGATATAGGAAGCACTACA 59.411 45.833 0.00 0.00 0.00 2.74
585 586 5.247110 CAGGTGGATATAGGAAGCACTACAT 59.753 44.000 0.00 0.00 0.00 2.29
586 587 5.846714 AGGTGGATATAGGAAGCACTACATT 59.153 40.000 0.00 0.00 0.00 2.71
587 588 7.016914 AGGTGGATATAGGAAGCACTACATTA 58.983 38.462 0.00 0.00 0.00 1.90
588 589 7.680310 AGGTGGATATAGGAAGCACTACATTAT 59.320 37.037 0.00 0.00 0.00 1.28
589 590 7.766278 GGTGGATATAGGAAGCACTACATTATG 59.234 40.741 0.00 0.00 0.00 1.90
590 591 7.766278 GTGGATATAGGAAGCACTACATTATGG 59.234 40.741 0.00 0.00 0.00 2.74
591 592 7.678171 TGGATATAGGAAGCACTACATTATGGA 59.322 37.037 0.00 0.00 0.00 3.41
592 593 8.540388 GGATATAGGAAGCACTACATTATGGAA 58.460 37.037 0.00 0.00 0.00 3.53
594 595 9.896645 ATATAGGAAGCACTACATTATGGAATG 57.103 33.333 0.00 0.00 46.77 2.67
595 596 5.380043 AGGAAGCACTACATTATGGAATGG 58.620 41.667 0.00 0.00 45.83 3.16
596 597 5.132648 AGGAAGCACTACATTATGGAATGGA 59.867 40.000 0.00 0.00 45.83 3.41
705 710 1.663695 GCCTAGTTTAATCTGCGCCA 58.336 50.000 4.18 0.00 0.00 5.69
719 724 1.817941 CGCCAACGGGGAATCGAAT 60.818 57.895 0.00 0.00 40.01 3.34
727 732 1.692173 GGGGAATCGAATCCGGGTCA 61.692 60.000 13.34 0.00 40.62 4.02
776 974 0.601558 TCGGGCTATTAGCGTGATCC 59.398 55.000 9.50 4.05 43.62 3.36
1014 1239 1.666553 GACCATGGCGACGAACACA 60.667 57.895 13.04 0.00 0.00 3.72
1098 1327 1.131638 TGTGAGAGAGCAACTTGGGT 58.868 50.000 0.00 0.00 0.00 4.51
1425 1668 1.534175 CGTCGTGGAAGGAGACATAGC 60.534 57.143 0.00 0.00 34.80 2.97
1469 1712 1.810532 GGCAGAAGAGATCGGACGT 59.189 57.895 0.00 0.00 0.00 4.34
1592 1843 0.031111 AGATGAGGGGGAATCGGTCA 60.031 55.000 0.00 0.00 0.00 4.02
2054 2355 1.048724 TTGGCGGAGAGGATGTAGGG 61.049 60.000 0.00 0.00 0.00 3.53
2180 2485 1.420138 GGTTTGAGAGGGTGACAAGGA 59.580 52.381 0.00 0.00 0.00 3.36
2333 2678 2.116366 CGAAGGGAAACAAAGCAAACG 58.884 47.619 0.00 0.00 0.00 3.60
2394 2739 0.464373 ACATGCCAAGGCTGGATACG 60.464 55.000 12.96 0.00 46.92 3.06
2433 2778 6.892485 AGTTTTACAACTAGGGTGTTACAGT 58.108 36.000 6.64 0.00 41.81 3.55
2434 2779 6.988580 AGTTTTACAACTAGGGTGTTACAGTC 59.011 38.462 6.64 0.00 41.81 3.51
2436 2781 3.225104 ACAACTAGGGTGTTACAGTCGA 58.775 45.455 0.00 0.00 0.00 4.20
2437 2782 3.255149 ACAACTAGGGTGTTACAGTCGAG 59.745 47.826 0.00 0.00 0.00 4.04
2438 2783 2.444421 ACTAGGGTGTTACAGTCGAGG 58.556 52.381 0.00 0.00 0.00 4.63
2439 2784 2.224967 ACTAGGGTGTTACAGTCGAGGT 60.225 50.000 0.00 0.00 0.00 3.85
2440 2785 1.254954 AGGGTGTTACAGTCGAGGTC 58.745 55.000 0.00 0.00 0.00 3.85
2442 2787 0.963962 GGTGTTACAGTCGAGGTCCA 59.036 55.000 0.00 0.00 0.00 4.02
2443 2788 1.336609 GGTGTTACAGTCGAGGTCCAC 60.337 57.143 0.00 0.00 0.00 4.02
2444 2789 0.963962 TGTTACAGTCGAGGTCCACC 59.036 55.000 0.00 0.00 0.00 4.61
2445 2790 0.109412 GTTACAGTCGAGGTCCACCG 60.109 60.000 0.00 0.00 42.08 4.94
2446 2791 0.538057 TTACAGTCGAGGTCCACCGT 60.538 55.000 0.00 0.00 42.08 4.83
2447 2792 0.957395 TACAGTCGAGGTCCACCGTC 60.957 60.000 0.00 0.00 42.08 4.79
2448 2793 1.972223 CAGTCGAGGTCCACCGTCT 60.972 63.158 0.00 0.00 42.08 4.18
2449 2794 1.674980 AGTCGAGGTCCACCGTCTC 60.675 63.158 0.00 0.00 42.08 3.36
2451 2796 3.054503 CGAGGTCCACCGTCTCGT 61.055 66.667 0.00 0.00 43.51 4.18
2452 2797 2.876219 GAGGTCCACCGTCTCGTC 59.124 66.667 0.00 0.00 42.08 4.20
2453 2798 1.674980 GAGGTCCACCGTCTCGTCT 60.675 63.158 0.00 0.00 42.08 4.18
2454 2799 1.228490 AGGTCCACCGTCTCGTCTT 60.228 57.895 0.00 0.00 42.08 3.01
2455 2800 1.080705 GGTCCACCGTCTCGTCTTG 60.081 63.158 0.00 0.00 0.00 3.02
2456 2801 1.080705 GTCCACCGTCTCGTCTTGG 60.081 63.158 0.00 0.00 0.00 3.61
2457 2802 2.261671 CCACCGTCTCGTCTTGGG 59.738 66.667 0.00 0.00 0.00 4.12
2458 2803 2.571216 CCACCGTCTCGTCTTGGGT 61.571 63.158 0.00 0.00 0.00 4.51
2459 2804 1.246056 CCACCGTCTCGTCTTGGGTA 61.246 60.000 0.00 0.00 0.00 3.69
2460 2805 0.170561 CACCGTCTCGTCTTGGGTAG 59.829 60.000 0.00 0.00 0.00 3.18
2461 2806 1.139095 CCGTCTCGTCTTGGGTAGC 59.861 63.158 0.00 0.00 0.00 3.58
2462 2807 1.226323 CGTCTCGTCTTGGGTAGCG 60.226 63.158 0.00 0.00 0.00 4.26
2463 2808 1.642037 CGTCTCGTCTTGGGTAGCGA 61.642 60.000 0.00 0.00 33.51 4.93
2464 2809 0.524862 GTCTCGTCTTGGGTAGCGAA 59.475 55.000 0.00 0.00 33.95 4.70
2465 2810 0.524862 TCTCGTCTTGGGTAGCGAAC 59.475 55.000 0.00 0.00 33.95 3.95
2473 2818 4.029472 GGTAGCGAACCTGGGAGA 57.971 61.111 0.00 0.00 45.75 3.71
2474 2819 1.516423 GGTAGCGAACCTGGGAGAC 59.484 63.158 0.00 0.00 45.75 3.36
2475 2820 1.255667 GGTAGCGAACCTGGGAGACA 61.256 60.000 0.00 0.00 45.75 3.41
2476 2821 0.108756 GTAGCGAACCTGGGAGACAC 60.109 60.000 0.00 0.00 0.00 3.67
2477 2822 1.592400 TAGCGAACCTGGGAGACACG 61.592 60.000 0.00 0.00 0.00 4.49
2478 2823 2.261671 CGAACCTGGGAGACACGG 59.738 66.667 0.00 0.00 0.00 4.94
2479 2824 2.047179 GAACCTGGGAGACACGGC 60.047 66.667 0.00 0.00 0.00 5.68
2480 2825 3.934391 GAACCTGGGAGACACGGCG 62.934 68.421 4.80 4.80 0.00 6.46
2503 2848 4.496336 GGCCGAGCCTGCCTTGAT 62.496 66.667 7.58 0.00 46.69 2.57
2504 2849 3.207669 GCCGAGCCTGCCTTGATG 61.208 66.667 0.00 0.00 0.00 3.07
2505 2850 2.586245 CCGAGCCTGCCTTGATGA 59.414 61.111 0.00 0.00 0.00 2.92
2506 2851 1.147824 CCGAGCCTGCCTTGATGAT 59.852 57.895 0.00 0.00 0.00 2.45
2507 2852 1.164662 CCGAGCCTGCCTTGATGATG 61.165 60.000 0.00 0.00 0.00 3.07
2508 2853 0.463295 CGAGCCTGCCTTGATGATGT 60.463 55.000 0.00 0.00 0.00 3.06
2509 2854 1.307097 GAGCCTGCCTTGATGATGTC 58.693 55.000 0.00 0.00 0.00 3.06
2510 2855 0.463295 AGCCTGCCTTGATGATGTCG 60.463 55.000 0.00 0.00 0.00 4.35
2511 2856 0.745845 GCCTGCCTTGATGATGTCGT 60.746 55.000 0.00 0.00 0.00 4.34
2512 2857 1.293924 CCTGCCTTGATGATGTCGTC 58.706 55.000 0.00 0.00 0.00 4.20
2513 2858 1.293924 CTGCCTTGATGATGTCGTCC 58.706 55.000 0.10 0.00 0.00 4.79
2514 2859 0.612744 TGCCTTGATGATGTCGTCCA 59.387 50.000 0.10 0.00 0.00 4.02
2515 2860 1.210234 TGCCTTGATGATGTCGTCCAT 59.790 47.619 0.10 0.00 36.13 3.41
2516 2861 1.600957 GCCTTGATGATGTCGTCCATG 59.399 52.381 0.10 0.00 32.56 3.66
2517 2862 2.910199 CCTTGATGATGTCGTCCATGT 58.090 47.619 0.10 0.00 32.56 3.21
2518 2863 2.868583 CCTTGATGATGTCGTCCATGTC 59.131 50.000 0.10 0.00 32.56 3.06
2519 2864 2.208326 TGATGATGTCGTCCATGTCG 57.792 50.000 0.10 0.00 32.56 4.35
2520 2865 1.202405 TGATGATGTCGTCCATGTCGG 60.202 52.381 7.49 0.00 32.56 4.79
2521 2866 0.530650 ATGATGTCGTCCATGTCGGC 60.531 55.000 5.41 5.41 32.56 5.54
2522 2867 1.883084 GATGTCGTCCATGTCGGCC 60.883 63.158 9.07 0.00 32.56 6.13
2523 2868 2.298158 GATGTCGTCCATGTCGGCCT 62.298 60.000 0.00 0.74 32.56 5.19
2524 2869 2.202756 GTCGTCCATGTCGGCCTC 60.203 66.667 0.00 0.00 33.14 4.70
2525 2870 3.822192 TCGTCCATGTCGGCCTCG 61.822 66.667 0.00 0.00 37.82 4.63
2526 2871 4.873129 CGTCCATGTCGGCCTCGG 62.873 72.222 0.00 0.00 36.95 4.63
2527 2872 3.771160 GTCCATGTCGGCCTCGGT 61.771 66.667 0.00 0.00 36.95 4.69
2528 2873 3.458163 TCCATGTCGGCCTCGGTC 61.458 66.667 0.00 0.00 36.95 4.79
2529 2874 3.770040 CCATGTCGGCCTCGGTCA 61.770 66.667 0.00 0.00 36.95 4.02
2530 2875 2.509336 CATGTCGGCCTCGGTCAC 60.509 66.667 0.00 0.00 36.95 3.67
2531 2876 4.129737 ATGTCGGCCTCGGTCACG 62.130 66.667 0.00 0.00 42.74 4.35
2533 2878 4.773117 GTCGGCCTCGGTCACGTC 62.773 72.222 0.00 0.00 41.85 4.34
2538 2883 3.667282 CCTCGGTCACGTCGGTGT 61.667 66.667 0.00 0.00 44.68 4.16
2539 2884 2.126965 CTCGGTCACGTCGGTGTC 60.127 66.667 0.00 0.00 44.68 3.67
2540 2885 3.923356 CTCGGTCACGTCGGTGTCG 62.923 68.421 0.00 2.17 44.68 4.35
2566 2911 2.354188 CGACGTGGACGCTTGTGA 60.354 61.111 0.00 0.00 44.43 3.58
2567 2912 2.365068 CGACGTGGACGCTTGTGAG 61.365 63.158 0.00 0.00 44.43 3.51
2568 2913 1.007734 GACGTGGACGCTTGTGAGA 60.008 57.895 0.00 0.00 44.43 3.27
2569 2914 0.596600 GACGTGGACGCTTGTGAGAA 60.597 55.000 0.00 0.00 44.43 2.87
2570 2915 0.597637 ACGTGGACGCTTGTGAGAAG 60.598 55.000 0.00 0.00 44.43 2.85
2571 2916 1.284982 CGTGGACGCTTGTGAGAAGG 61.285 60.000 0.00 0.00 0.00 3.46
2572 2917 0.951040 GTGGACGCTTGTGAGAAGGG 60.951 60.000 4.85 4.85 36.43 3.95
2573 2918 2.035442 GGACGCTTGTGAGAAGGGC 61.035 63.158 6.31 0.15 34.03 5.19
2574 2919 1.301716 GACGCTTGTGAGAAGGGCA 60.302 57.895 6.31 0.00 34.03 5.36
2575 2920 1.294659 GACGCTTGTGAGAAGGGCAG 61.295 60.000 6.31 0.00 34.03 4.85
2576 2921 2.684843 CGCTTGTGAGAAGGGCAGC 61.685 63.158 0.00 0.00 0.00 5.25
2577 2922 2.684843 GCTTGTGAGAAGGGCAGCG 61.685 63.158 0.00 0.00 0.00 5.18
2578 2923 2.669569 TTGTGAGAAGGGCAGCGC 60.670 61.111 0.00 0.00 0.00 5.92
2594 2939 4.899239 GCGCCACGATGGAGAGGG 62.899 72.222 10.89 0.00 39.92 4.30
2595 2940 4.227134 CGCCACGATGGAGAGGGG 62.227 72.222 8.04 0.00 39.92 4.79
2596 2941 3.866582 GCCACGATGGAGAGGGGG 61.867 72.222 8.04 0.00 40.96 5.40
2597 2942 3.866582 CCACGATGGAGAGGGGGC 61.867 72.222 0.00 0.00 40.96 5.80
2598 2943 4.227134 CACGATGGAGAGGGGGCG 62.227 72.222 0.00 0.00 0.00 6.13
2599 2944 4.779733 ACGATGGAGAGGGGGCGT 62.780 66.667 0.00 0.00 0.00 5.68
2600 2945 3.917760 CGATGGAGAGGGGGCGTC 61.918 72.222 0.00 0.00 0.00 5.19
2601 2946 3.917760 GATGGAGAGGGGGCGTCG 61.918 72.222 0.00 0.00 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
248 249 9.826574 AATTCCAATTCTGACATATTCCATTTG 57.173 29.630 0.00 0.00 0.00 2.32
365 366 6.293626 CGCACTATATTTTGGAATTGAGGGAG 60.294 42.308 0.00 0.00 0.00 4.30
366 367 5.530915 CGCACTATATTTTGGAATTGAGGGA 59.469 40.000 0.00 0.00 0.00 4.20
367 368 5.762045 CGCACTATATTTTGGAATTGAGGG 58.238 41.667 0.00 0.00 0.00 4.30
368 369 5.215160 GCGCACTATATTTTGGAATTGAGG 58.785 41.667 0.30 0.00 0.00 3.86
369 370 5.009010 AGGCGCACTATATTTTGGAATTGAG 59.991 40.000 10.83 0.00 0.00 3.02
370 371 4.887071 AGGCGCACTATATTTTGGAATTGA 59.113 37.500 10.83 0.00 0.00 2.57
371 372 4.977963 CAGGCGCACTATATTTTGGAATTG 59.022 41.667 10.83 0.00 0.00 2.32
372 373 4.499696 GCAGGCGCACTATATTTTGGAATT 60.500 41.667 10.83 0.00 38.36 2.17
373 374 3.004734 GCAGGCGCACTATATTTTGGAAT 59.995 43.478 10.83 0.00 38.36 3.01
374 375 2.357637 GCAGGCGCACTATATTTTGGAA 59.642 45.455 10.83 0.00 38.36 3.53
375 376 1.946768 GCAGGCGCACTATATTTTGGA 59.053 47.619 10.83 0.00 38.36 3.53
376 377 1.334059 CGCAGGCGCACTATATTTTGG 60.334 52.381 10.83 0.00 38.40 3.28
377 378 2.022808 CGCAGGCGCACTATATTTTG 57.977 50.000 10.83 0.00 38.40 2.44
391 392 2.815647 GACCTCGGAAAGCGCAGG 60.816 66.667 11.47 9.19 0.00 4.85
392 393 2.815647 GGACCTCGGAAAGCGCAG 60.816 66.667 11.47 0.00 0.00 5.18
393 394 3.171828 TTGGACCTCGGAAAGCGCA 62.172 57.895 11.47 0.00 0.00 6.09
394 395 2.358247 TTGGACCTCGGAAAGCGC 60.358 61.111 0.00 0.00 0.00 5.92
395 396 0.602905 AAGTTGGACCTCGGAAAGCG 60.603 55.000 0.00 0.00 0.00 4.68
396 397 1.266989 CAAAGTTGGACCTCGGAAAGC 59.733 52.381 0.00 0.00 0.00 3.51
397 398 2.548480 GTCAAAGTTGGACCTCGGAAAG 59.452 50.000 0.00 0.00 0.00 2.62
398 399 2.171870 AGTCAAAGTTGGACCTCGGAAA 59.828 45.455 6.78 0.00 35.89 3.13
399 400 1.766496 AGTCAAAGTTGGACCTCGGAA 59.234 47.619 6.78 0.00 35.89 4.30
400 401 1.420430 AGTCAAAGTTGGACCTCGGA 58.580 50.000 6.78 0.00 35.89 4.55
401 402 3.611766 ATAGTCAAAGTTGGACCTCGG 57.388 47.619 6.78 0.00 35.89 4.63
402 403 7.611213 AATTTATAGTCAAAGTTGGACCTCG 57.389 36.000 6.78 0.00 35.89 4.63
405 406 9.850628 GGTTAAATTTATAGTCAAAGTTGGACC 57.149 33.333 6.78 0.00 35.89 4.46
414 415 8.938906 GGTCTCGTTGGTTAAATTTATAGTCAA 58.061 33.333 0.00 0.00 0.00 3.18
415 416 8.095792 TGGTCTCGTTGGTTAAATTTATAGTCA 58.904 33.333 0.00 0.00 0.00 3.41
416 417 8.483307 TGGTCTCGTTGGTTAAATTTATAGTC 57.517 34.615 0.00 0.00 0.00 2.59
417 418 8.851541 TTGGTCTCGTTGGTTAAATTTATAGT 57.148 30.769 0.00 0.00 0.00 2.12
420 421 7.544217 GCAATTGGTCTCGTTGGTTAAATTTAT 59.456 33.333 7.72 0.00 0.00 1.40
421 422 6.864165 GCAATTGGTCTCGTTGGTTAAATTTA 59.136 34.615 7.72 0.00 0.00 1.40
422 423 5.694458 GCAATTGGTCTCGTTGGTTAAATTT 59.306 36.000 7.72 0.00 0.00 1.82
423 424 5.227152 GCAATTGGTCTCGTTGGTTAAATT 58.773 37.500 7.72 0.00 0.00 1.82
424 425 4.614993 CGCAATTGGTCTCGTTGGTTAAAT 60.615 41.667 7.72 0.00 0.00 1.40
425 426 3.304123 CGCAATTGGTCTCGTTGGTTAAA 60.304 43.478 7.72 0.00 0.00 1.52
426 427 2.224549 CGCAATTGGTCTCGTTGGTTAA 59.775 45.455 7.72 0.00 0.00 2.01
427 428 1.801771 CGCAATTGGTCTCGTTGGTTA 59.198 47.619 7.72 0.00 0.00 2.85
428 429 0.591170 CGCAATTGGTCTCGTTGGTT 59.409 50.000 7.72 0.00 0.00 3.67
429 430 1.234615 CCGCAATTGGTCTCGTTGGT 61.235 55.000 7.72 0.00 0.00 3.67
430 431 1.501741 CCGCAATTGGTCTCGTTGG 59.498 57.895 7.72 0.00 0.00 3.77
431 432 1.154225 GCCGCAATTGGTCTCGTTG 60.154 57.895 7.72 0.00 0.00 4.10
432 433 2.677003 CGCCGCAATTGGTCTCGTT 61.677 57.895 7.72 0.00 0.00 3.85
433 434 3.118454 CGCCGCAATTGGTCTCGT 61.118 61.111 7.72 0.00 0.00 4.18
434 435 3.864686 CCGCCGCAATTGGTCTCG 61.865 66.667 7.72 1.81 0.00 4.04
435 436 3.508840 CCCGCCGCAATTGGTCTC 61.509 66.667 7.72 0.00 0.00 3.36
436 437 3.976701 CTCCCGCCGCAATTGGTCT 62.977 63.158 7.72 0.00 0.00 3.85
437 438 3.508840 CTCCCGCCGCAATTGGTC 61.509 66.667 7.72 0.00 0.00 4.02
438 439 3.561120 TTCTCCCGCCGCAATTGGT 62.561 57.895 7.72 0.00 0.00 3.67
439 440 1.872197 TTTTCTCCCGCCGCAATTGG 61.872 55.000 7.72 0.00 0.00 3.16
440 441 0.038709 TTTTTCTCCCGCCGCAATTG 60.039 50.000 0.00 0.00 0.00 2.32
441 442 2.346597 TTTTTCTCCCGCCGCAATT 58.653 47.368 0.00 0.00 0.00 2.32
442 443 4.089105 TTTTTCTCCCGCCGCAAT 57.911 50.000 0.00 0.00 0.00 3.56
488 489 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
489 490 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
490 491 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
491 492 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
492 493 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
493 494 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
494 495 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
512 513 3.508840 GACCAATTGCGGCGGGAG 61.509 66.667 9.78 0.00 0.00 4.30
513 514 3.561120 AAGACCAATTGCGGCGGGA 62.561 57.895 9.78 0.00 0.00 5.14
514 515 3.061848 AAGACCAATTGCGGCGGG 61.062 61.111 9.78 2.79 0.00 6.13
515 516 2.179018 CAAGACCAATTGCGGCGG 59.821 61.111 9.78 0.00 0.00 6.13
516 517 1.302383 TACCAAGACCAATTGCGGCG 61.302 55.000 0.51 0.51 0.00 6.46
517 518 0.451783 CTACCAAGACCAATTGCGGC 59.548 55.000 0.00 0.00 0.00 6.53
518 519 1.821216 ACTACCAAGACCAATTGCGG 58.179 50.000 0.00 0.00 0.00 5.69
519 520 5.365403 TTTAACTACCAAGACCAATTGCG 57.635 39.130 0.00 0.00 0.00 4.85
520 521 9.135843 GTAAATTTAACTACCAAGACCAATTGC 57.864 33.333 0.00 0.00 0.00 3.56
521 522 9.337091 CGTAAATTTAACTACCAAGACCAATTG 57.663 33.333 0.00 0.00 0.00 2.32
522 523 8.517056 CCGTAAATTTAACTACCAAGACCAATT 58.483 33.333 0.00 0.00 0.00 2.32
523 524 7.666804 ACCGTAAATTTAACTACCAAGACCAAT 59.333 33.333 0.00 0.00 0.00 3.16
524 525 6.997476 ACCGTAAATTTAACTACCAAGACCAA 59.003 34.615 0.00 0.00 0.00 3.67
525 526 6.532826 ACCGTAAATTTAACTACCAAGACCA 58.467 36.000 0.00 0.00 0.00 4.02
526 527 6.650390 TGACCGTAAATTTAACTACCAAGACC 59.350 38.462 0.00 0.00 0.00 3.85
527 528 7.656707 TGACCGTAAATTTAACTACCAAGAC 57.343 36.000 0.00 0.00 0.00 3.01
528 529 8.674263 TTTGACCGTAAATTTAACTACCAAGA 57.326 30.769 0.00 0.00 0.00 3.02
529 530 8.562052 ACTTTGACCGTAAATTTAACTACCAAG 58.438 33.333 0.00 2.45 0.00 3.61
530 531 8.449251 ACTTTGACCGTAAATTTAACTACCAA 57.551 30.769 0.00 0.00 0.00 3.67
531 532 8.344098 CAACTTTGACCGTAAATTTAACTACCA 58.656 33.333 0.00 0.00 0.00 3.25
532 533 8.558700 TCAACTTTGACCGTAAATTTAACTACC 58.441 33.333 0.00 0.00 31.01 3.18
533 534 9.934190 TTCAACTTTGACCGTAAATTTAACTAC 57.066 29.630 0.00 0.00 36.83 2.73
535 536 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
536 537 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
537 538 7.481642 TGCTTCAACTTTGACCGTAAATTTAA 58.518 30.769 0.00 0.00 36.83 1.52
538 539 7.028926 TGCTTCAACTTTGACCGTAAATTTA 57.971 32.000 0.00 0.00 36.83 1.40
539 540 5.897050 TGCTTCAACTTTGACCGTAAATTT 58.103 33.333 0.00 0.00 36.83 1.82
540 541 5.507315 CCTGCTTCAACTTTGACCGTAAATT 60.507 40.000 0.00 0.00 36.83 1.82
541 542 4.023193 CCTGCTTCAACTTTGACCGTAAAT 60.023 41.667 0.00 0.00 36.83 1.40
542 543 3.314080 CCTGCTTCAACTTTGACCGTAAA 59.686 43.478 0.00 0.00 36.83 2.01
543 544 2.875933 CCTGCTTCAACTTTGACCGTAA 59.124 45.455 0.00 0.00 36.83 3.18
544 545 2.158871 ACCTGCTTCAACTTTGACCGTA 60.159 45.455 0.00 0.00 36.83 4.02
545 546 1.308998 CCTGCTTCAACTTTGACCGT 58.691 50.000 0.00 0.00 36.83 4.83
546 547 1.002468 CACCTGCTTCAACTTTGACCG 60.002 52.381 0.00 0.00 36.83 4.79
547 548 1.338020 CCACCTGCTTCAACTTTGACC 59.662 52.381 0.00 0.00 36.83 4.02
548 549 2.297701 TCCACCTGCTTCAACTTTGAC 58.702 47.619 0.00 0.00 36.83 3.18
549 550 2.727123 TCCACCTGCTTCAACTTTGA 57.273 45.000 0.00 0.00 34.92 2.69
550 551 5.297776 CCTATATCCACCTGCTTCAACTTTG 59.702 44.000 0.00 0.00 0.00 2.77
551 552 5.191722 TCCTATATCCACCTGCTTCAACTTT 59.808 40.000 0.00 0.00 0.00 2.66
552 553 4.721776 TCCTATATCCACCTGCTTCAACTT 59.278 41.667 0.00 0.00 0.00 2.66
553 554 4.298626 TCCTATATCCACCTGCTTCAACT 58.701 43.478 0.00 0.00 0.00 3.16
554 555 4.689612 TCCTATATCCACCTGCTTCAAC 57.310 45.455 0.00 0.00 0.00 3.18
555 556 4.444876 GCTTCCTATATCCACCTGCTTCAA 60.445 45.833 0.00 0.00 0.00 2.69
556 557 3.071602 GCTTCCTATATCCACCTGCTTCA 59.928 47.826 0.00 0.00 0.00 3.02
557 558 3.071602 TGCTTCCTATATCCACCTGCTTC 59.928 47.826 0.00 0.00 0.00 3.86
558 559 3.048600 TGCTTCCTATATCCACCTGCTT 58.951 45.455 0.00 0.00 0.00 3.91
559 560 2.370189 GTGCTTCCTATATCCACCTGCT 59.630 50.000 0.00 0.00 0.00 4.24
560 561 2.370189 AGTGCTTCCTATATCCACCTGC 59.630 50.000 0.00 0.00 0.00 4.85
561 562 4.588951 TGTAGTGCTTCCTATATCCACCTG 59.411 45.833 0.00 0.00 0.00 4.00
562 563 4.816126 TGTAGTGCTTCCTATATCCACCT 58.184 43.478 0.00 0.00 0.00 4.00
563 564 5.746990 ATGTAGTGCTTCCTATATCCACC 57.253 43.478 0.00 0.00 0.00 4.61
564 565 7.766278 CCATAATGTAGTGCTTCCTATATCCAC 59.234 40.741 0.00 0.00 0.00 4.02
565 566 7.678171 TCCATAATGTAGTGCTTCCTATATCCA 59.322 37.037 0.00 0.00 0.00 3.41
566 567 8.079211 TCCATAATGTAGTGCTTCCTATATCC 57.921 38.462 0.00 0.00 0.00 2.59
568 569 9.896645 CATTCCATAATGTAGTGCTTCCTATAT 57.103 33.333 0.00 0.00 38.15 0.86
569 570 8.321353 CCATTCCATAATGTAGTGCTTCCTATA 58.679 37.037 0.00 0.00 40.84 1.31
570 571 7.017551 TCCATTCCATAATGTAGTGCTTCCTAT 59.982 37.037 0.00 0.00 40.84 2.57
571 572 6.328934 TCCATTCCATAATGTAGTGCTTCCTA 59.671 38.462 0.00 0.00 40.84 2.94
572 573 5.132648 TCCATTCCATAATGTAGTGCTTCCT 59.867 40.000 0.00 0.00 40.84 3.36
573 574 5.376625 TCCATTCCATAATGTAGTGCTTCC 58.623 41.667 0.00 0.00 40.84 3.46
574 575 5.471456 CCTCCATTCCATAATGTAGTGCTTC 59.529 44.000 0.00 0.00 40.84 3.86
575 576 5.380043 CCTCCATTCCATAATGTAGTGCTT 58.620 41.667 0.00 0.00 40.84 3.91
576 577 4.202503 CCCTCCATTCCATAATGTAGTGCT 60.203 45.833 0.00 0.00 40.84 4.40
577 578 4.074970 CCCTCCATTCCATAATGTAGTGC 58.925 47.826 0.00 0.00 40.84 4.40
578 579 5.072329 ACTCCCTCCATTCCATAATGTAGTG 59.928 44.000 0.00 0.00 40.84 2.74
579 580 5.227593 ACTCCCTCCATTCCATAATGTAGT 58.772 41.667 0.00 0.00 40.84 2.73
580 581 5.832539 ACTCCCTCCATTCCATAATGTAG 57.167 43.478 0.00 0.00 40.84 2.74
581 582 7.888514 ATTACTCCCTCCATTCCATAATGTA 57.111 36.000 0.00 0.00 40.84 2.29
582 583 6.786843 ATTACTCCCTCCATTCCATAATGT 57.213 37.500 0.00 0.00 40.84 2.71
583 584 9.586732 TTTAATTACTCCCTCCATTCCATAATG 57.413 33.333 0.00 0.00 41.90 1.90
585 586 9.640952 CTTTTAATTACTCCCTCCATTCCATAA 57.359 33.333 0.00 0.00 0.00 1.90
586 587 9.009675 TCTTTTAATTACTCCCTCCATTCCATA 57.990 33.333 0.00 0.00 0.00 2.74
587 588 7.882755 TCTTTTAATTACTCCCTCCATTCCAT 58.117 34.615 0.00 0.00 0.00 3.41
588 589 7.278724 TCTTTTAATTACTCCCTCCATTCCA 57.721 36.000 0.00 0.00 0.00 3.53
589 590 8.589701 TTTCTTTTAATTACTCCCTCCATTCC 57.410 34.615 0.00 0.00 0.00 3.01
687 692 2.030457 CGTTGGCGCAGATTAAACTAGG 59.970 50.000 10.83 0.00 0.00 3.02
705 710 1.145377 CCGGATTCGATTCCCCGTT 59.855 57.895 18.32 0.00 40.30 4.44
727 732 2.923035 CCGTGTCTCCACCCAGGT 60.923 66.667 0.00 0.00 38.41 4.00
776 974 0.316841 GCGAGCTCCCCTCTTATCAG 59.683 60.000 8.47 0.00 38.49 2.90
1014 1239 3.003173 TTGTAGCCCTGCCTCGCT 61.003 61.111 0.00 0.00 39.17 4.93
1098 1327 0.102481 GCGTTCTCCAGCTTCGGATA 59.898 55.000 0.00 0.00 33.56 2.59
1425 1668 2.434359 GGAGTCCGCCAAGTTCCG 60.434 66.667 0.00 0.00 0.00 4.30
1469 1712 2.043248 GGGTAGCCTCTCCGACCA 60.043 66.667 2.95 0.00 33.33 4.02
1592 1843 0.325765 GTGCCCTAGGGTCTCCTCTT 60.326 60.000 28.96 0.00 43.66 2.85
2054 2355 4.949856 TCTCCCTTTAAATCTTGCACCATC 59.050 41.667 0.00 0.00 0.00 3.51
2333 2678 3.392882 CTCTTGGTGGGTTTCATTTTGC 58.607 45.455 0.00 0.00 0.00 3.68
2421 2766 1.254954 GACCTCGACTGTAACACCCT 58.745 55.000 0.00 0.00 0.00 4.34
2436 2781 1.228490 AAGACGAGACGGTGGACCT 60.228 57.895 0.00 0.00 0.00 3.85
2437 2782 1.080705 CAAGACGAGACGGTGGACC 60.081 63.158 0.00 0.00 0.00 4.46
2438 2783 1.080705 CCAAGACGAGACGGTGGAC 60.081 63.158 0.00 0.00 32.04 4.02
2439 2784 2.273179 CCCAAGACGAGACGGTGGA 61.273 63.158 0.00 0.00 32.04 4.02
2440 2785 1.246056 TACCCAAGACGAGACGGTGG 61.246 60.000 0.00 0.00 0.00 4.61
2442 2787 1.593296 GCTACCCAAGACGAGACGGT 61.593 60.000 0.00 0.00 0.00 4.83
2443 2788 1.139095 GCTACCCAAGACGAGACGG 59.861 63.158 0.00 0.00 0.00 4.79
2444 2789 1.226323 CGCTACCCAAGACGAGACG 60.226 63.158 0.00 0.00 0.00 4.18
2445 2790 0.524862 TTCGCTACCCAAGACGAGAC 59.475 55.000 0.00 0.00 35.93 3.36
2446 2791 0.524862 GTTCGCTACCCAAGACGAGA 59.475 55.000 0.00 0.00 35.93 4.04
2447 2792 0.458025 GGTTCGCTACCCAAGACGAG 60.458 60.000 0.00 0.00 41.43 4.18
2448 2793 1.588082 GGTTCGCTACCCAAGACGA 59.412 57.895 0.00 0.00 41.43 4.20
2449 2794 4.180496 GGTTCGCTACCCAAGACG 57.820 61.111 0.00 0.00 41.43 4.18
2457 2802 0.108756 GTGTCTCCCAGGTTCGCTAC 60.109 60.000 0.00 0.00 0.00 3.58
2458 2803 1.592400 CGTGTCTCCCAGGTTCGCTA 61.592 60.000 0.00 0.00 0.00 4.26
2459 2804 2.932234 CGTGTCTCCCAGGTTCGCT 61.932 63.158 0.00 0.00 0.00 4.93
2460 2805 2.432628 CGTGTCTCCCAGGTTCGC 60.433 66.667 0.00 0.00 0.00 4.70
2461 2806 2.261671 CCGTGTCTCCCAGGTTCG 59.738 66.667 0.00 0.00 0.00 3.95
2462 2807 2.047179 GCCGTGTCTCCCAGGTTC 60.047 66.667 0.00 0.00 0.00 3.62
2463 2808 4.003788 CGCCGTGTCTCCCAGGTT 62.004 66.667 0.00 0.00 0.00 3.50
2487 2832 2.955022 ATCATCAAGGCAGGCTCGGC 62.955 60.000 0.00 2.99 0.00 5.54
2488 2833 1.147824 ATCATCAAGGCAGGCTCGG 59.852 57.895 0.00 0.00 0.00 4.63
2489 2834 0.463295 ACATCATCAAGGCAGGCTCG 60.463 55.000 0.00 0.00 0.00 5.03
2490 2835 1.307097 GACATCATCAAGGCAGGCTC 58.693 55.000 0.00 0.00 0.00 4.70
2491 2836 0.463295 CGACATCATCAAGGCAGGCT 60.463 55.000 0.00 0.00 0.00 4.58
2492 2837 0.745845 ACGACATCATCAAGGCAGGC 60.746 55.000 0.00 0.00 0.00 4.85
2493 2838 1.293924 GACGACATCATCAAGGCAGG 58.706 55.000 0.00 0.00 0.00 4.85
2494 2839 1.293924 GGACGACATCATCAAGGCAG 58.706 55.000 0.00 0.00 0.00 4.85
2495 2840 0.612744 TGGACGACATCATCAAGGCA 59.387 50.000 0.00 0.00 0.00 4.75
2496 2841 1.600957 CATGGACGACATCATCAAGGC 59.399 52.381 0.00 0.00 37.84 4.35
2497 2842 2.868583 GACATGGACGACATCATCAAGG 59.131 50.000 0.00 0.00 37.84 3.61
2498 2843 2.537214 CGACATGGACGACATCATCAAG 59.463 50.000 8.49 0.00 37.84 3.02
2499 2844 2.539476 CGACATGGACGACATCATCAA 58.461 47.619 8.49 0.00 37.84 2.57
2500 2845 1.202405 CCGACATGGACGACATCATCA 60.202 52.381 14.36 0.00 42.00 3.07
2501 2846 1.491670 CCGACATGGACGACATCATC 58.508 55.000 14.36 0.00 42.00 2.92
2502 2847 0.530650 GCCGACATGGACGACATCAT 60.531 55.000 14.36 0.00 42.00 2.45
2503 2848 1.153647 GCCGACATGGACGACATCA 60.154 57.895 14.36 0.00 42.00 3.07
2504 2849 1.883084 GGCCGACATGGACGACATC 60.883 63.158 14.36 0.00 42.00 3.06
2505 2850 2.186903 GGCCGACATGGACGACAT 59.813 61.111 14.36 0.00 42.00 3.06
2511 2856 3.458163 GACCGAGGCCGACATGGA 61.458 66.667 0.00 0.00 42.00 3.41
2512 2857 3.770040 TGACCGAGGCCGACATGG 61.770 66.667 0.00 0.00 42.50 3.66
2513 2858 2.509336 GTGACCGAGGCCGACATG 60.509 66.667 0.00 0.00 38.22 3.21
2514 2859 4.129737 CGTGACCGAGGCCGACAT 62.130 66.667 0.00 0.00 38.22 3.06
2516 2861 4.773117 GACGTGACCGAGGCCGAC 62.773 72.222 0.00 0.00 38.22 4.79
2521 2866 3.606065 GACACCGACGTGACCGAGG 62.606 68.421 0.00 0.00 43.14 4.63
2522 2867 2.126965 GACACCGACGTGACCGAG 60.127 66.667 0.00 0.00 43.14 4.63
2523 2868 4.016629 CGACACCGACGTGACCGA 62.017 66.667 0.00 0.00 43.14 4.69
2549 2894 2.354188 TCACAAGCGTCCACGTCG 60.354 61.111 0.36 0.00 42.22 5.12
2550 2895 0.596600 TTCTCACAAGCGTCCACGTC 60.597 55.000 0.36 0.00 42.22 4.34
2551 2896 0.597637 CTTCTCACAAGCGTCCACGT 60.598 55.000 0.36 0.00 42.22 4.49
2552 2897 1.284982 CCTTCTCACAAGCGTCCACG 61.285 60.000 0.00 0.00 43.27 4.94
2553 2898 0.951040 CCCTTCTCACAAGCGTCCAC 60.951 60.000 0.00 0.00 0.00 4.02
2554 2899 1.371183 CCCTTCTCACAAGCGTCCA 59.629 57.895 0.00 0.00 0.00 4.02
2555 2900 2.035442 GCCCTTCTCACAAGCGTCC 61.035 63.158 0.00 0.00 0.00 4.79
2556 2901 1.294659 CTGCCCTTCTCACAAGCGTC 61.295 60.000 0.00 0.00 0.00 5.19
2557 2902 1.302033 CTGCCCTTCTCACAAGCGT 60.302 57.895 0.00 0.00 0.00 5.07
2558 2903 2.684843 GCTGCCCTTCTCACAAGCG 61.685 63.158 0.00 0.00 0.00 4.68
2559 2904 2.684843 CGCTGCCCTTCTCACAAGC 61.685 63.158 0.00 0.00 0.00 4.01
2560 2905 2.684843 GCGCTGCCCTTCTCACAAG 61.685 63.158 0.00 0.00 0.00 3.16
2561 2906 2.669569 GCGCTGCCCTTCTCACAA 60.670 61.111 0.00 0.00 0.00 3.33
2577 2922 4.899239 CCCTCTCCATCGTGGCGC 62.899 72.222 0.00 0.00 37.47 6.53
2578 2923 4.227134 CCCCTCTCCATCGTGGCG 62.227 72.222 0.00 0.00 37.47 5.69
2579 2924 3.866582 CCCCCTCTCCATCGTGGC 61.867 72.222 0.00 0.00 37.47 5.01
2580 2925 3.866582 GCCCCCTCTCCATCGTGG 61.867 72.222 0.00 0.00 39.43 4.94
2581 2926 4.227134 CGCCCCCTCTCCATCGTG 62.227 72.222 0.00 0.00 0.00 4.35
2582 2927 4.779733 ACGCCCCCTCTCCATCGT 62.780 66.667 0.00 0.00 0.00 3.73
2583 2928 3.917760 GACGCCCCCTCTCCATCG 61.918 72.222 0.00 0.00 0.00 3.84
2584 2929 3.917760 CGACGCCCCCTCTCCATC 61.918 72.222 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.