Multiple sequence alignment - TraesCS2A01G232000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G232000 chr2A 100.000 2363 0 0 1 2363 275351218 275353580 0.000000e+00 4364.0
1 TraesCS2A01G232000 chr2A 90.212 1461 104 17 1 1450 275333032 275334464 0.000000e+00 1869.0
2 TraesCS2A01G232000 chr2A 82.807 1425 183 45 978 2363 661854445 661855846 0.000000e+00 1218.0
3 TraesCS2A01G232000 chr2A 92.536 844 42 13 1 829 275330851 275331688 0.000000e+00 1190.0
4 TraesCS2A01G232000 chr2A 92.000 725 56 2 1641 2363 275334463 275335187 0.000000e+00 1016.0
5 TraesCS2A01G232000 chr2A 90.664 557 40 10 23 574 346464519 346465068 0.000000e+00 730.0
6 TraesCS2A01G232000 chr2A 90.794 554 39 6 23 574 346470075 346470618 0.000000e+00 730.0
7 TraesCS2A01G232000 chr2A 86.859 624 62 12 1 606 180507570 180506949 0.000000e+00 680.0
8 TraesCS2A01G232000 chr2A 91.453 117 8 2 978 1092 661846529 661846645 2.430000e-35 159.0
9 TraesCS2A01G232000 chr5A 89.979 1407 119 6 954 2358 304713213 304711827 0.000000e+00 1797.0
10 TraesCS2A01G232000 chr5A 87.218 1416 153 24 954 2363 108744866 108743473 0.000000e+00 1587.0
11 TraesCS2A01G232000 chr5A 87.705 976 94 20 1047 2002 36041236 36042205 0.000000e+00 1114.0
12 TraesCS2A01G232000 chr5A 81.970 660 94 25 1721 2363 29409104 29408453 9.610000e-149 536.0
13 TraesCS2A01G232000 chr5A 84.706 170 25 1 773 942 505855432 505855264 4.040000e-38 169.0
14 TraesCS2A01G232000 chr4A 82.907 1445 191 47 955 2363 685920677 685919253 0.000000e+00 1249.0
15 TraesCS2A01G232000 chr4A 89.860 927 89 4 956 1879 685936301 685935377 0.000000e+00 1186.0
16 TraesCS2A01G232000 chr4A 90.298 907 84 4 977 1879 490559431 490560337 0.000000e+00 1184.0
17 TraesCS2A01G232000 chr4A 87.385 650 69 10 1718 2363 414095809 414096449 0.000000e+00 734.0
18 TraesCS2A01G232000 chr4A 90.072 554 43 9 26 574 342094978 342094432 0.000000e+00 708.0
19 TraesCS2A01G232000 chr4A 89.531 554 46 9 26 574 342073782 342073236 0.000000e+00 691.0
20 TraesCS2A01G232000 chr4A 88.768 552 47 12 1 543 409742723 409743268 0.000000e+00 662.0
21 TraesCS2A01G232000 chr4A 86.207 522 59 12 1849 2363 254891120 254890605 9.540000e-154 553.0
22 TraesCS2A01G232000 chr4A 100.000 35 0 0 776 810 353090782 353090748 5.450000e-07 65.8
23 TraesCS2A01G232000 chr7A 90.920 837 69 5 1047 1879 394887296 394888129 0.000000e+00 1118.0
24 TraesCS2A01G232000 chr7A 91.547 556 36 6 23 574 335284595 335285143 0.000000e+00 756.0
25 TraesCS2A01G232000 chr7A 89.199 574 51 7 1 572 335276884 335277448 0.000000e+00 706.0
26 TraesCS2A01G232000 chr7A 91.949 472 31 7 1891 2358 273331190 273330722 0.000000e+00 654.0
27 TraesCS2A01G232000 chr7A 83.433 670 76 18 1720 2358 277308760 277308095 7.270000e-165 590.0
28 TraesCS2A01G232000 chr7A 83.284 670 77 19 1720 2358 277289044 277288379 3.380000e-163 584.0
29 TraesCS2A01G232000 chr7A 89.571 163 16 1 946 1108 391580158 391579997 3.080000e-49 206.0
30 TraesCS2A01G232000 chr7A 84.524 168 19 2 776 942 107956284 107956123 2.430000e-35 159.0
31 TraesCS2A01G232000 chr1A 92.500 640 46 2 1720 2358 209589416 209588778 0.000000e+00 915.0
32 TraesCS2A01G232000 chr1A 85.561 187 24 3 776 962 447940133 447939950 2.400000e-45 193.0
33 TraesCS2A01G232000 chr1A 84.817 191 26 2 773 963 207903761 207903948 3.100000e-44 189.0
34 TraesCS2A01G232000 chr1A 84.574 188 26 3 776 963 447932387 447932203 1.440000e-42 183.0
35 TraesCS2A01G232000 chr1A 83.598 189 27 3 776 963 236882219 236882034 8.680000e-40 174.0
36 TraesCS2A01G232000 chr1A 93.846 65 3 1 576 639 424631773 424631709 1.930000e-16 97.1
37 TraesCS2A01G232000 chr1A 86.420 81 10 1 711 790 247877555 247877635 1.160000e-13 87.9
38 TraesCS2A01G232000 chr1A 91.071 56 5 0 711 766 247865610 247865665 2.520000e-10 76.8
39 TraesCS2A01G232000 chr3A 87.572 523 54 11 1849 2363 631680844 631681363 1.560000e-166 595.0
40 TraesCS2A01G232000 chr3A 83.951 81 12 1 711 790 396591950 396592030 2.520000e-10 76.8
41 TraesCS2A01G232000 chr1D 87.500 496 50 10 1866 2355 82189798 82189309 1.590000e-156 562.0
42 TraesCS2A01G232000 chr2D 87.008 508 50 13 1866 2363 395192212 395191711 2.050000e-155 558.0
43 TraesCS2A01G232000 chr4B 85.470 117 15 2 842 957 345642042 345642157 1.150000e-23 121.0
44 TraesCS2A01G232000 chr1B 84.000 125 19 1 818 942 99860403 99860280 4.130000e-23 119.0
45 TraesCS2A01G232000 chr6A 85.294 68 7 2 542 606 462751113 462751180 1.520000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G232000 chr2A 275351218 275353580 2362 False 4364.000000 4364 100.000000 1 2363 1 chr2A.!!$F1 2362
1 TraesCS2A01G232000 chr2A 275330851 275335187 4336 False 1358.333333 1869 91.582667 1 2363 3 chr2A.!!$F6 2362
2 TraesCS2A01G232000 chr2A 661854445 661855846 1401 False 1218.000000 1218 82.807000 978 2363 1 chr2A.!!$F5 1385
3 TraesCS2A01G232000 chr2A 346464519 346465068 549 False 730.000000 730 90.664000 23 574 1 chr2A.!!$F2 551
4 TraesCS2A01G232000 chr2A 346470075 346470618 543 False 730.000000 730 90.794000 23 574 1 chr2A.!!$F3 551
5 TraesCS2A01G232000 chr2A 180506949 180507570 621 True 680.000000 680 86.859000 1 606 1 chr2A.!!$R1 605
6 TraesCS2A01G232000 chr5A 304711827 304713213 1386 True 1797.000000 1797 89.979000 954 2358 1 chr5A.!!$R3 1404
7 TraesCS2A01G232000 chr5A 108743473 108744866 1393 True 1587.000000 1587 87.218000 954 2363 1 chr5A.!!$R2 1409
8 TraesCS2A01G232000 chr5A 36041236 36042205 969 False 1114.000000 1114 87.705000 1047 2002 1 chr5A.!!$F1 955
9 TraesCS2A01G232000 chr5A 29408453 29409104 651 True 536.000000 536 81.970000 1721 2363 1 chr5A.!!$R1 642
10 TraesCS2A01G232000 chr4A 685919253 685920677 1424 True 1249.000000 1249 82.907000 955 2363 1 chr4A.!!$R5 1408
11 TraesCS2A01G232000 chr4A 685935377 685936301 924 True 1186.000000 1186 89.860000 956 1879 1 chr4A.!!$R6 923
12 TraesCS2A01G232000 chr4A 490559431 490560337 906 False 1184.000000 1184 90.298000 977 1879 1 chr4A.!!$F3 902
13 TraesCS2A01G232000 chr4A 414095809 414096449 640 False 734.000000 734 87.385000 1718 2363 1 chr4A.!!$F2 645
14 TraesCS2A01G232000 chr4A 342094432 342094978 546 True 708.000000 708 90.072000 26 574 1 chr4A.!!$R3 548
15 TraesCS2A01G232000 chr4A 342073236 342073782 546 True 691.000000 691 89.531000 26 574 1 chr4A.!!$R2 548
16 TraesCS2A01G232000 chr4A 409742723 409743268 545 False 662.000000 662 88.768000 1 543 1 chr4A.!!$F1 542
17 TraesCS2A01G232000 chr4A 254890605 254891120 515 True 553.000000 553 86.207000 1849 2363 1 chr4A.!!$R1 514
18 TraesCS2A01G232000 chr7A 394887296 394888129 833 False 1118.000000 1118 90.920000 1047 1879 1 chr7A.!!$F3 832
19 TraesCS2A01G232000 chr7A 335284595 335285143 548 False 756.000000 756 91.547000 23 574 1 chr7A.!!$F2 551
20 TraesCS2A01G232000 chr7A 335276884 335277448 564 False 706.000000 706 89.199000 1 572 1 chr7A.!!$F1 571
21 TraesCS2A01G232000 chr7A 277308095 277308760 665 True 590.000000 590 83.433000 1720 2358 1 chr7A.!!$R4 638
22 TraesCS2A01G232000 chr7A 277288379 277289044 665 True 584.000000 584 83.284000 1720 2358 1 chr7A.!!$R3 638
23 TraesCS2A01G232000 chr1A 209588778 209589416 638 True 915.000000 915 92.500000 1720 2358 1 chr1A.!!$R1 638
24 TraesCS2A01G232000 chr3A 631680844 631681363 519 False 595.000000 595 87.572000 1849 2363 1 chr3A.!!$F2 514
25 TraesCS2A01G232000 chr2D 395191711 395192212 501 True 558.000000 558 87.008000 1866 2363 1 chr2D.!!$R1 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
629 2819 0.322187 CCGAACCACCTTTCCCGATT 60.322 55.0 0.0 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 4208 0.107508 CATGCATTCTCCACGGGTCT 60.108 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 99 4.439153 CGAGGGAATTCACATGGTGATTTG 60.439 45.833 11.02 0.00 42.40 2.32
420 435 7.559897 GTCCAAGAAAAATATCCCTATTGGTCA 59.440 37.037 0.00 0.00 37.72 4.02
422 437 8.416329 CCAAGAAAAATATCCCTATTGGTCAAG 58.584 37.037 0.00 0.00 33.00 3.02
436 451 8.297426 CCTATTGGTCAAGTTCTTTTTCTAACC 58.703 37.037 0.00 0.00 0.00 2.85
629 2819 0.322187 CCGAACCACCTTTCCCGATT 60.322 55.000 0.00 0.00 0.00 3.34
641 2831 1.819753 TCCCGATTGATCCCCTCATT 58.180 50.000 0.00 0.00 32.72 2.57
654 2844 1.912043 CCCTCATTCTTGTCTCCCTGT 59.088 52.381 0.00 0.00 0.00 4.00
657 2847 3.257393 CTCATTCTTGTCTCCCTGTTCG 58.743 50.000 0.00 0.00 0.00 3.95
661 2851 0.951040 CTTGTCTCCCTGTTCGTGCC 60.951 60.000 0.00 0.00 0.00 5.01
665 2855 2.992689 TCCCTGTTCGTGCCGCTA 60.993 61.111 0.00 0.00 0.00 4.26
718 2908 2.580962 GGCCAATCCTTTCTCTCCATC 58.419 52.381 0.00 0.00 0.00 3.51
719 2909 2.216898 GCCAATCCTTTCTCTCCATCG 58.783 52.381 0.00 0.00 0.00 3.84
746 2936 4.828296 TCCTCCTACCCCGCGACC 62.828 72.222 8.23 0.00 0.00 4.79
751 2941 2.660802 CTACCCCGCGACCAAACT 59.339 61.111 8.23 0.00 0.00 2.66
771 2961 2.759973 CGCCCTAGAGCTCCACCA 60.760 66.667 10.93 0.00 0.00 4.17
774 2964 1.306141 CCCTAGAGCTCCACCACCA 60.306 63.158 10.93 0.00 0.00 4.17
801 3001 2.043450 CCTCCACCTCGCCTCTCT 60.043 66.667 0.00 0.00 0.00 3.10
829 3029 2.689983 CCCCGCTGATGCTTTCTTTTAT 59.310 45.455 0.00 0.00 36.97 1.40
835 3035 4.201724 GCTGATGCTTTCTTTTATCGTCGT 60.202 41.667 0.00 0.00 36.03 4.34
837 3037 5.617609 TGATGCTTTCTTTTATCGTCGTTG 58.382 37.500 0.00 0.00 0.00 4.10
838 3038 5.178623 TGATGCTTTCTTTTATCGTCGTTGT 59.821 36.000 0.00 0.00 0.00 3.32
839 3039 4.768145 TGCTTTCTTTTATCGTCGTTGTG 58.232 39.130 0.00 0.00 0.00 3.33
869 3069 2.759560 AACCAATCCCCATGGCGC 60.760 61.111 6.09 0.00 41.89 6.53
900 3100 4.221422 CCACGCCATCGACGGGAT 62.221 66.667 9.07 0.00 35.45 3.85
902 3102 3.912907 ACGCCATCGACGGGATCC 61.913 66.667 1.92 1.92 39.41 3.36
905 3105 2.797278 GCCATCGACGGGATCCTGT 61.797 63.158 26.78 26.78 38.41 4.00
914 3114 2.187946 GGATCCTGTGTGCCTCCG 59.812 66.667 3.84 0.00 0.00 4.63
1029 3229 2.973899 CCTCACTGTAGCTGCGGT 59.026 61.111 10.88 10.88 0.00 5.68
1095 3296 0.982704 ACCTCATCAGCAAGCTCACT 59.017 50.000 0.00 0.00 0.00 3.41
1185 3386 1.196766 GGACCTCCCTTGTTACCCGT 61.197 60.000 0.00 0.00 0.00 5.28
1191 3392 0.610785 CCCTTGTTACCCGTGCCATT 60.611 55.000 0.00 0.00 0.00 3.16
1294 3495 0.041238 CCTCCTGTGGGGTGTAGAGA 59.959 60.000 0.00 0.00 36.25 3.10
1415 3616 3.572682 GGACATCTACGATACATGGACCA 59.427 47.826 0.00 0.00 0.00 4.02
1456 3658 4.087265 CGTCAAGTACAACTACTCTACGC 58.913 47.826 0.00 0.00 35.73 4.42
1461 3663 5.487153 AGTACAACTACTCTACGCTGATG 57.513 43.478 0.00 0.00 0.00 3.07
1531 3733 3.135225 CCAAGTACCACGACAATTGACA 58.865 45.455 13.59 0.00 0.00 3.58
1538 3740 3.745975 ACCACGACAATTGACACATAGTG 59.254 43.478 13.59 8.88 39.75 2.74
1564 3766 5.810587 CACTACTTTTGCCGTGTACATCTAT 59.189 40.000 0.00 0.00 0.00 1.98
1618 3820 1.648116 TGTGTACCACTACTTCCCCC 58.352 55.000 0.00 0.00 35.11 5.40
1623 3825 0.252558 ACCACTACTTCCCCCATCGT 60.253 55.000 0.00 0.00 0.00 3.73
1624 3826 0.909623 CCACTACTTCCCCCATCGTT 59.090 55.000 0.00 0.00 0.00 3.85
1629 3831 0.991920 ACTTCCCCCATCGTTGTGAT 59.008 50.000 0.00 0.00 38.01 3.06
1637 3839 3.198068 CCCATCGTTGTGATTACCTCTG 58.802 50.000 0.00 0.00 34.13 3.35
1670 3873 0.736636 CGGAGCATGTACGACTACCA 59.263 55.000 0.00 0.00 0.00 3.25
1696 3899 0.326238 AGACCGGTGGACCATACCAT 60.326 55.000 14.63 0.00 42.17 3.55
1713 3916 2.708861 ACCATGTCAAGTTCCACTACCA 59.291 45.455 0.00 0.00 0.00 3.25
1729 3932 4.579340 CACTACCATCACGAGTACCACTAT 59.421 45.833 0.00 0.00 0.00 2.12
1733 3936 4.649674 ACCATCACGAGTACCACTATCATT 59.350 41.667 0.00 0.00 0.00 2.57
1748 3951 0.984230 TCATTGACCCTCGAAGCCTT 59.016 50.000 0.00 0.00 0.00 4.35
1847 4059 1.670674 GCCGTGAAACACTACCATCGA 60.671 52.381 0.00 0.00 35.74 3.59
1941 4181 2.124653 AACCGTCCCGTTTGCACA 60.125 55.556 0.00 0.00 0.00 4.57
1968 4208 0.381801 GGTATAACCGCCGAGACGAA 59.618 55.000 0.00 0.00 34.06 3.85
2103 4357 2.510906 GATCACCCCACCATCCGG 59.489 66.667 0.00 0.00 38.77 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 65 8.076178 CCATGTGAATTCCCTCGATTTAAATAC 58.924 37.037 2.27 0.00 0.00 1.89
104 109 8.317679 AGCTCCCTAAACATATTGTGAGATATC 58.682 37.037 0.00 0.00 0.00 1.63
420 435 8.275758 AGAAAGAGAGGGTTAGAAAAAGAACTT 58.724 33.333 0.00 0.00 0.00 2.66
422 437 8.453238 AAGAAAGAGAGGGTTAGAAAAAGAAC 57.547 34.615 0.00 0.00 0.00 3.01
629 2819 2.774234 GGAGACAAGAATGAGGGGATCA 59.226 50.000 0.00 0.00 43.70 2.92
641 2831 0.033504 GCACGAACAGGGAGACAAGA 59.966 55.000 0.00 0.00 0.00 3.02
657 2847 3.124686 CTCCTCTCCTAGCGGCAC 58.875 66.667 1.45 0.00 0.00 5.01
697 2887 0.253044 TGGAGAGAAAGGATTGGCCG 59.747 55.000 0.00 0.00 43.43 6.13
700 2890 3.462021 GTCGATGGAGAGAAAGGATTGG 58.538 50.000 0.00 0.00 0.00 3.16
706 2896 0.103208 CGGGGTCGATGGAGAGAAAG 59.897 60.000 0.00 0.00 39.00 2.62
718 2908 3.417167 TAGGAGGAGAGCGGGGTCG 62.417 68.421 0.00 0.00 39.81 4.79
719 2909 1.829096 GTAGGAGGAGAGCGGGGTC 60.829 68.421 0.00 0.00 0.00 4.46
746 2936 2.109126 GCTCTAGGGCGGCAGTTTG 61.109 63.158 12.47 0.00 0.00 2.93
751 2941 4.777854 TGGAGCTCTAGGGCGGCA 62.778 66.667 14.64 0.00 37.29 5.69
771 2961 2.284995 GGAGGAGGAGCTGGTGGT 60.285 66.667 0.00 0.00 0.00 4.16
774 2964 2.284995 GGTGGAGGAGGAGCTGGT 60.285 66.667 0.00 0.00 0.00 4.00
812 3012 4.201724 ACGACGATAAAAGAAAGCATCAGC 60.202 41.667 0.00 0.00 42.56 4.26
829 3029 2.656007 GACGGCACACAACGACGA 60.656 61.111 0.00 0.00 0.00 4.20
835 3035 2.747443 TTCCCTGGACGGCACACAA 61.747 57.895 0.00 0.00 0.00 3.33
837 3037 2.668550 GTTCCCTGGACGGCACAC 60.669 66.667 0.00 0.00 0.00 3.82
838 3038 3.948719 GGTTCCCTGGACGGCACA 61.949 66.667 0.00 0.00 0.00 4.57
839 3039 2.764637 ATTGGTTCCCTGGACGGCAC 62.765 60.000 0.00 0.00 0.00 5.01
869 3069 1.811266 CGTGGCCTTGAGATGACGG 60.811 63.158 3.32 0.00 0.00 4.79
890 3090 1.816537 CACACAGGATCCCGTCGAT 59.183 57.895 8.55 0.00 0.00 3.59
891 3091 3.001902 GCACACAGGATCCCGTCGA 62.002 63.158 8.55 0.00 0.00 4.20
942 3142 2.363147 GAGGAGGTCGAGGCCAGT 60.363 66.667 5.01 0.00 0.00 4.00
944 3144 4.779733 GGGAGGAGGTCGAGGCCA 62.780 72.222 5.01 0.00 0.00 5.36
948 3148 4.444081 ACGGGGGAGGAGGTCGAG 62.444 72.222 0.00 0.00 0.00 4.04
969 3169 1.201429 GGTGGAGGCAGGGAAAGAGA 61.201 60.000 0.00 0.00 0.00 3.10
1008 3208 1.294780 GCAGCTACAGTGAGGCAGT 59.705 57.895 0.00 0.00 0.00 4.40
1076 3276 0.982704 AGTGAGCTTGCTGATGAGGT 59.017 50.000 0.00 0.00 0.00 3.85
1166 3367 1.196766 ACGGGTAACAAGGGAGGTCC 61.197 60.000 0.00 0.00 39.74 4.46
1185 3386 1.573829 GAAGACGAACGGCAATGGCA 61.574 55.000 7.75 0.00 43.71 4.92
1191 3392 1.952133 CGGTTGAAGACGAACGGCA 60.952 57.895 2.25 0.00 37.01 5.69
1294 3495 2.436109 GAGGTGGTGGTGGTGCAT 59.564 61.111 0.00 0.00 0.00 3.96
1415 3616 1.065102 CGGTTCCACATCGATCGTAGT 59.935 52.381 15.94 11.91 0.00 2.73
1456 3658 1.869754 CGGTAGTGATTCCCGCATCAG 60.870 57.143 0.00 0.00 33.69 2.90
1461 3663 1.588139 CGACGGTAGTGATTCCCGC 60.588 63.158 0.00 0.00 45.49 6.13
1531 3733 3.081804 GGCAAAAGTAGTGGCACTATGT 58.918 45.455 28.49 17.01 41.05 2.29
1538 3740 1.196127 GTACACGGCAAAAGTAGTGGC 59.804 52.381 0.00 0.00 38.78 5.01
1577 3779 1.134487 CGCGTTTGTGCTACATGGG 59.866 57.895 0.00 0.00 0.00 4.00
1618 3820 2.609459 GGCAGAGGTAATCACAACGATG 59.391 50.000 0.00 0.00 33.40 3.84
1623 3825 1.004277 GGGTGGCAGAGGTAATCACAA 59.996 52.381 0.00 0.00 0.00 3.33
1624 3826 0.618458 GGGTGGCAGAGGTAATCACA 59.382 55.000 0.00 0.00 0.00 3.58
1629 3831 2.120940 TCGGGGTGGCAGAGGTAA 59.879 61.111 0.00 0.00 0.00 2.85
1670 3873 1.590147 GTCCACCGGTCTTCGTGAT 59.410 57.895 2.59 0.00 37.11 3.06
1713 3916 5.221263 GGTCAATGATAGTGGTACTCGTGAT 60.221 44.000 0.00 0.00 0.00 3.06
1729 3932 0.984230 AAGGCTTCGAGGGTCAATGA 59.016 50.000 0.00 0.00 0.00 2.57
1748 3951 0.313043 GAGGAACTTGACGTCCACGA 59.687 55.000 14.12 0.00 41.55 4.35
1847 4059 3.097342 AGTGGTACTATTGGTCCTCGT 57.903 47.619 0.00 0.00 0.00 4.18
1894 4129 4.931601 CAGTGCAATGTAGAGCAAGTAGAA 59.068 41.667 5.87 0.00 43.20 2.10
1941 4181 1.202336 CGGCGGTTATACCTTCGAAGT 60.202 52.381 23.03 13.66 35.66 3.01
1968 4208 0.107508 CATGCATTCTCCACGGGTCT 60.108 55.000 0.00 0.00 0.00 3.85
2078 4329 1.060640 TGGTGGGGTGATCCTGGATAT 60.061 52.381 9.66 0.00 35.33 1.63
2103 4357 2.845752 TTACGGGAGCGTGTCATGCC 62.846 60.000 13.52 5.32 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.