Multiple sequence alignment - TraesCS2A01G230400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G230400 chr2A 100.000 3321 0 0 1 3321 265276189 265272869 0.000000e+00 6133.0
1 TraesCS2A01G230400 chr2A 88.095 462 48 6 1 458 568401790 568401332 2.910000e-150 542.0
2 TraesCS2A01G230400 chr2A 88.393 112 7 2 452 558 265331948 265332058 2.690000e-26 130.0
3 TraesCS2A01G230400 chr2A 82.353 136 22 2 1216 1350 572487551 572487417 2.090000e-22 117.0
4 TraesCS2A01G230400 chr2A 88.542 96 11 0 1216 1311 625243577 625243672 2.090000e-22 117.0
5 TraesCS2A01G230400 chr2A 79.720 143 22 6 1426 1565 100825947 100825809 2.730000e-16 97.1
6 TraesCS2A01G230400 chr2A 89.796 49 4 1 3273 3321 160842251 160842204 9.950000e-06 62.1
7 TraesCS2A01G230400 chr2B 93.580 2243 81 19 467 2666 266963058 266960836 0.000000e+00 3286.0
8 TraesCS2A01G230400 chr2B 99.240 263 2 0 2665 2927 150596748 150597010 3.000000e-130 475.0
9 TraesCS2A01G230400 chr2B 91.958 286 21 2 2929 3212 266960832 266960547 1.860000e-107 399.0
10 TraesCS2A01G230400 chr2B 82.353 136 22 2 1216 1350 489849195 489849329 2.090000e-22 117.0
11 TraesCS2A01G230400 chr2B 88.542 96 11 0 1216 1311 567034936 567035031 2.090000e-22 117.0
12 TraesCS2A01G230400 chr2D 95.086 1913 50 6 732 2618 211198411 211200305 0.000000e+00 2972.0
13 TraesCS2A01G230400 chr2D 93.056 288 18 2 2927 3212 211200340 211200627 1.420000e-113 420.0
14 TraesCS2A01G230400 chr2D 91.971 274 15 2 468 736 211198076 211198347 8.700000e-101 377.0
15 TraesCS2A01G230400 chr2D 85.965 114 12 4 1201 1311 482790023 482790135 5.820000e-23 119.0
16 TraesCS2A01G230400 chr2D 82.353 136 22 2 1216 1350 417625371 417625505 2.090000e-22 117.0
17 TraesCS2A01G230400 chr2D 88.542 96 11 0 1216 1311 636638927 636639022 2.090000e-22 117.0
18 TraesCS2A01G230400 chr2D 81.119 143 20 6 1426 1565 101872746 101872608 1.260000e-19 108.0
19 TraesCS2A01G230400 chr2D 84.158 101 15 1 1426 1526 101956486 101956387 2.730000e-16 97.1
20 TraesCS2A01G230400 chr5A 90.728 453 41 1 1 452 64788955 64789407 1.320000e-168 603.0
21 TraesCS2A01G230400 chr5A 88.521 453 46 5 1 450 518944160 518944609 8.100000e-151 544.0
22 TraesCS2A01G230400 chr5A 99.245 265 2 0 2665 2929 10553509 10553773 2.320000e-131 479.0
23 TraesCS2A01G230400 chr1A 89.845 453 45 1 1 452 68376521 68376973 6.180000e-162 580.0
24 TraesCS2A01G230400 chr1A 88.403 457 47 6 1 456 224096070 224096521 2.250000e-151 545.0
25 TraesCS2A01G230400 chr5D 89.451 455 43 5 1 453 4313321 4312870 1.340000e-158 569.0
26 TraesCS2A01G230400 chr4A 89.011 455 47 2 1 452 609567046 609566592 8.050000e-156 560.0
27 TraesCS2A01G230400 chr4A 98.524 271 4 0 2666 2936 4195252 4194982 2.320000e-131 479.0
28 TraesCS2A01G230400 chr4A 98.155 271 4 1 2657 2927 677437419 677437688 3.880000e-129 472.0
29 TraesCS2A01G230400 chr4A 91.837 49 3 1 3273 3321 565757342 565757295 2.140000e-07 67.6
30 TraesCS2A01G230400 chr6D 88.767 454 47 4 1 451 17102970 17102518 1.350000e-153 553.0
31 TraesCS2A01G230400 chr6D 91.892 111 7 2 3212 3321 6481546 6481437 1.600000e-33 154.0
32 TraesCS2A01G230400 chr3B 88.521 453 50 2 1 452 129554343 129554794 6.260000e-152 547.0
33 TraesCS2A01G230400 chr3B 98.519 270 4 0 2658 2927 49226426 49226695 8.340000e-131 477.0
34 TraesCS2A01G230400 chr3B 83.193 119 18 2 1439 1556 304277893 304278010 1.260000e-19 108.0
35 TraesCS2A01G230400 chr6A 98.513 269 4 0 2659 2927 486271512 486271780 3.000000e-130 475.0
36 TraesCS2A01G230400 chr1B 98.519 270 2 2 2666 2933 302760073 302759804 3.000000e-130 475.0
37 TraesCS2A01G230400 chr3A 98.507 268 4 0 2667 2934 686900002 686899735 1.080000e-129 473.0
38 TraesCS2A01G230400 chr3A 82.946 129 18 4 1439 1565 330698718 330698844 2.710000e-21 113.0
39 TraesCS2A01G230400 chr7A 97.778 270 5 1 2659 2927 345951570 345951839 6.490000e-127 464.0
40 TraesCS2A01G230400 chr3D 90.000 110 7 2 3212 3321 584096552 584096447 4.470000e-29 139.0
41 TraesCS2A01G230400 chr3D 82.946 129 18 4 1439 1565 253340073 253339947 2.710000e-21 113.0
42 TraesCS2A01G230400 chr1D 86.239 109 4 4 3213 3321 281369855 281369758 1.260000e-19 108.0
43 TraesCS2A01G230400 chr5B 83.486 109 16 2 3213 3321 704891205 704891099 2.110000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G230400 chr2A 265272869 265276189 3320 True 6133.000000 6133 100.000 1 3321 1 chr2A.!!$R3 3320
1 TraesCS2A01G230400 chr2B 266960547 266963058 2511 True 1842.500000 3286 92.769 467 3212 2 chr2B.!!$R1 2745
2 TraesCS2A01G230400 chr2D 211198076 211200627 2551 False 1256.333333 2972 93.371 468 3212 3 chr2D.!!$F4 2744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 246 0.028110 GGATCTGAATTCCAACGCGC 59.972 55.0 5.73 0.00 33.21 6.86 F
429 430 0.045002 CGTTCTCGTCAATTAGCGCG 60.045 55.0 0.00 0.00 0.00 6.86 F
430 431 0.314339 GTTCTCGTCAATTAGCGCGC 60.314 55.0 26.66 26.66 0.00 6.86 F
2124 2260 0.175989 GGGCTGGAAGAGGTAGTTCG 59.824 60.0 0.00 0.00 34.07 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1610 1716 0.178992 TTGTTGCTAGGGTTGCTGCT 60.179 50.000 0.00 0.00 0.00 4.24 R
2081 2217 0.376152 CCATGCTGTTGTCGATGCTC 59.624 55.000 0.00 0.00 0.00 4.26 R
2245 2381 1.216444 GCACGACTCCATCAGCTCA 59.784 57.895 0.00 0.00 0.00 4.26 R
3252 3390 0.466555 TTAAAATAGCCGGCCGCCAT 60.467 50.000 26.15 10.15 38.78 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.895232 CATGTGCCAACTAGGACTACT 57.105 47.619 0.00 0.00 41.22 2.57
22 23 5.537300 CATGTGCCAACTAGGACTACTAT 57.463 43.478 0.00 0.00 41.22 2.12
23 24 5.292765 CATGTGCCAACTAGGACTACTATG 58.707 45.833 0.00 0.00 41.22 2.23
24 25 4.350245 TGTGCCAACTAGGACTACTATGT 58.650 43.478 0.00 0.00 41.22 2.29
25 26 4.159693 TGTGCCAACTAGGACTACTATGTG 59.840 45.833 0.00 0.00 41.22 3.21
26 27 4.159879 GTGCCAACTAGGACTACTATGTGT 59.840 45.833 0.00 0.00 41.22 3.72
27 28 4.159693 TGCCAACTAGGACTACTATGTGTG 59.840 45.833 0.00 0.00 41.22 3.82
28 29 4.683832 CCAACTAGGACTACTATGTGTGC 58.316 47.826 0.00 0.00 41.22 4.57
29 30 4.159693 CCAACTAGGACTACTATGTGTGCA 59.840 45.833 0.00 0.00 41.22 4.57
30 31 5.337250 CCAACTAGGACTACTATGTGTGCAA 60.337 44.000 0.00 0.00 41.22 4.08
31 32 5.326200 ACTAGGACTACTATGTGTGCAAC 57.674 43.478 0.00 0.00 37.35 4.17
32 33 5.017490 ACTAGGACTACTATGTGTGCAACT 58.983 41.667 0.00 0.00 38.04 3.16
33 34 6.185511 ACTAGGACTACTATGTGTGCAACTA 58.814 40.000 0.00 0.00 38.04 2.24
34 35 6.834451 ACTAGGACTACTATGTGTGCAACTAT 59.166 38.462 0.00 0.00 38.04 2.12
35 36 7.997223 ACTAGGACTACTATGTGTGCAACTATA 59.003 37.037 0.00 0.00 38.04 1.31
36 37 7.655521 AGGACTACTATGTGTGCAACTATAA 57.344 36.000 0.00 0.00 38.04 0.98
37 38 8.074613 AGGACTACTATGTGTGCAACTATAAA 57.925 34.615 0.00 0.00 38.04 1.40
38 39 7.980099 AGGACTACTATGTGTGCAACTATAAAC 59.020 37.037 0.00 0.00 38.04 2.01
39 40 7.762615 GGACTACTATGTGTGCAACTATAAACA 59.237 37.037 0.00 0.00 38.04 2.83
40 41 9.314321 GACTACTATGTGTGCAACTATAAACAT 57.686 33.333 0.00 0.00 38.04 2.71
41 42 9.667107 ACTACTATGTGTGCAACTATAAACATT 57.333 29.630 0.00 0.00 38.04 2.71
42 43 9.920826 CTACTATGTGTGCAACTATAAACATTG 57.079 33.333 0.00 0.00 38.04 2.82
43 44 8.335532 ACTATGTGTGCAACTATAAACATTGT 57.664 30.769 0.00 0.00 38.04 2.71
44 45 8.236586 ACTATGTGTGCAACTATAAACATTGTG 58.763 33.333 0.00 0.00 38.04 3.33
45 46 5.767269 TGTGTGCAACTATAAACATTGTGG 58.233 37.500 0.00 0.00 38.04 4.17
46 47 5.532779 TGTGTGCAACTATAAACATTGTGGA 59.467 36.000 0.00 0.00 38.04 4.02
47 48 6.208402 TGTGTGCAACTATAAACATTGTGGAT 59.792 34.615 0.00 0.00 38.04 3.41
48 49 6.527722 GTGTGCAACTATAAACATTGTGGATG 59.472 38.462 0.00 0.00 38.76 3.51
49 50 5.516339 GTGCAACTATAAACATTGTGGATGC 59.484 40.000 0.00 0.00 39.47 3.91
50 51 5.184671 TGCAACTATAAACATTGTGGATGCA 59.815 36.000 4.64 4.64 38.27 3.96
51 52 5.745294 GCAACTATAAACATTGTGGATGCAG 59.255 40.000 0.00 0.00 39.47 4.41
52 53 5.505173 ACTATAAACATTGTGGATGCAGC 57.495 39.130 0.00 0.00 39.47 5.25
53 54 5.195940 ACTATAAACATTGTGGATGCAGCT 58.804 37.500 0.22 0.00 39.47 4.24
54 55 4.644103 ATAAACATTGTGGATGCAGCTC 57.356 40.909 0.22 0.00 39.47 4.09
55 56 1.180029 AACATTGTGGATGCAGCTCC 58.820 50.000 0.22 0.00 39.47 4.70
56 57 0.038599 ACATTGTGGATGCAGCTCCA 59.961 50.000 4.87 4.87 43.09 3.86
57 58 1.179152 CATTGTGGATGCAGCTCCAA 58.821 50.000 10.64 9.60 46.66 3.53
58 59 1.546923 CATTGTGGATGCAGCTCCAAA 59.453 47.619 10.64 2.70 46.66 3.28
59 60 1.702182 TTGTGGATGCAGCTCCAAAA 58.298 45.000 10.64 9.10 46.66 2.44
60 61 1.702182 TGTGGATGCAGCTCCAAAAA 58.298 45.000 10.64 0.00 46.66 1.94
102 103 5.878261 GCATCATGCAGTATTAAAGTTGC 57.122 39.130 4.20 2.54 44.26 4.17
109 110 4.981674 TGCAGTATTAAAGTTGCACAAAGC 59.018 37.500 6.94 0.00 41.23 3.51
121 122 3.971032 GCACAAAGCAGTACTGAAGTT 57.029 42.857 27.08 12.74 44.79 2.66
122 123 3.621794 GCACAAAGCAGTACTGAAGTTG 58.378 45.455 27.08 24.01 44.79 3.16
123 124 3.621794 CACAAAGCAGTACTGAAGTTGC 58.378 45.455 27.08 10.73 33.28 4.17
124 125 3.065233 CACAAAGCAGTACTGAAGTTGCA 59.935 43.478 27.08 0.00 35.00 4.08
125 126 3.065371 ACAAAGCAGTACTGAAGTTGCAC 59.935 43.478 27.08 5.92 35.00 4.57
126 127 2.620251 AGCAGTACTGAAGTTGCACA 57.380 45.000 27.08 0.00 35.00 4.57
127 128 2.917933 AGCAGTACTGAAGTTGCACAA 58.082 42.857 27.08 0.00 35.00 3.33
128 129 3.480470 AGCAGTACTGAAGTTGCACAAT 58.520 40.909 27.08 0.00 35.00 2.71
129 130 4.641396 AGCAGTACTGAAGTTGCACAATA 58.359 39.130 27.08 0.00 35.00 1.90
130 131 5.248640 AGCAGTACTGAAGTTGCACAATAT 58.751 37.500 27.08 0.00 35.00 1.28
131 132 6.406370 AGCAGTACTGAAGTTGCACAATATA 58.594 36.000 27.08 0.00 35.00 0.86
132 133 6.536582 AGCAGTACTGAAGTTGCACAATATAG 59.463 38.462 27.08 0.00 35.00 1.31
133 134 6.709643 CAGTACTGAAGTTGCACAATATAGC 58.290 40.000 18.45 0.00 0.00 2.97
134 135 4.864916 ACTGAAGTTGCACAATATAGCG 57.135 40.909 0.00 0.00 0.00 4.26
135 136 3.063997 ACTGAAGTTGCACAATATAGCGC 59.936 43.478 0.00 0.00 0.00 5.92
136 137 2.030335 TGAAGTTGCACAATATAGCGCG 59.970 45.455 0.00 0.00 0.00 6.86
137 138 1.934589 AGTTGCACAATATAGCGCGA 58.065 45.000 12.10 0.00 0.00 5.87
138 139 2.276201 AGTTGCACAATATAGCGCGAA 58.724 42.857 12.10 0.00 0.00 4.70
139 140 2.675844 AGTTGCACAATATAGCGCGAAA 59.324 40.909 12.10 0.00 0.00 3.46
140 141 3.029074 GTTGCACAATATAGCGCGAAAG 58.971 45.455 12.10 0.00 0.00 2.62
141 142 2.276201 TGCACAATATAGCGCGAAAGT 58.724 42.857 12.10 0.00 0.00 2.66
142 143 2.675844 TGCACAATATAGCGCGAAAGTT 59.324 40.909 12.10 0.00 0.00 2.66
143 144 3.029074 GCACAATATAGCGCGAAAGTTG 58.971 45.455 12.10 10.13 0.00 3.16
144 145 3.607439 CACAATATAGCGCGAAAGTTGG 58.393 45.455 12.10 0.00 0.00 3.77
145 146 2.031683 ACAATATAGCGCGAAAGTTGGC 59.968 45.455 12.10 0.00 0.00 4.52
146 147 1.948104 ATATAGCGCGAAAGTTGGCA 58.052 45.000 12.10 0.00 31.76 4.92
147 148 1.948104 TATAGCGCGAAAGTTGGCAT 58.052 45.000 12.10 0.00 31.76 4.40
148 149 0.657840 ATAGCGCGAAAGTTGGCATC 59.342 50.000 12.10 0.00 31.76 3.91
149 150 0.672091 TAGCGCGAAAGTTGGCATCA 60.672 50.000 12.10 0.00 31.76 3.07
150 151 1.081509 GCGCGAAAGTTGGCATCAA 60.082 52.632 12.10 0.00 31.76 2.57
151 152 0.662970 GCGCGAAAGTTGGCATCAAA 60.663 50.000 12.10 0.00 34.28 2.69
152 153 1.764851 CGCGAAAGTTGGCATCAAAA 58.235 45.000 0.00 0.00 34.28 2.44
153 154 2.123342 CGCGAAAGTTGGCATCAAAAA 58.877 42.857 0.00 0.00 34.28 1.94
176 177 8.434870 AAAAATTTCGTCGAAACATACTCATG 57.565 30.769 21.91 0.00 34.23 3.07
177 178 4.577687 TTTCGTCGAAACATACTCATGC 57.422 40.909 16.22 0.00 35.39 4.06
178 179 2.182014 TCGTCGAAACATACTCATGCG 58.818 47.619 0.00 0.00 35.39 4.73
179 180 1.255342 CGTCGAAACATACTCATGCGG 59.745 52.381 0.00 0.00 35.39 5.69
180 181 1.593006 GTCGAAACATACTCATGCGGG 59.407 52.381 0.00 0.00 35.39 6.13
181 182 1.478916 TCGAAACATACTCATGCGGGA 59.521 47.619 0.00 0.00 35.39 5.14
182 183 2.102420 TCGAAACATACTCATGCGGGAT 59.898 45.455 0.00 0.00 35.39 3.85
183 184 2.476619 CGAAACATACTCATGCGGGATC 59.523 50.000 0.00 0.00 35.39 3.36
184 185 3.733337 GAAACATACTCATGCGGGATCT 58.267 45.455 0.00 0.00 35.39 2.75
185 186 4.558697 CGAAACATACTCATGCGGGATCTA 60.559 45.833 0.00 0.00 35.39 1.98
186 187 4.955811 AACATACTCATGCGGGATCTAA 57.044 40.909 0.00 0.00 35.39 2.10
187 188 5.489792 AACATACTCATGCGGGATCTAAT 57.510 39.130 0.00 0.00 35.39 1.73
188 189 5.489792 ACATACTCATGCGGGATCTAATT 57.510 39.130 0.00 0.00 35.39 1.40
189 190 5.869579 ACATACTCATGCGGGATCTAATTT 58.130 37.500 0.00 0.00 35.39 1.82
190 191 6.299141 ACATACTCATGCGGGATCTAATTTT 58.701 36.000 0.00 0.00 35.39 1.82
191 192 7.450074 ACATACTCATGCGGGATCTAATTTTA 58.550 34.615 0.00 0.00 35.39 1.52
192 193 7.936847 ACATACTCATGCGGGATCTAATTTTAA 59.063 33.333 0.00 0.00 35.39 1.52
193 194 8.783093 CATACTCATGCGGGATCTAATTTTAAA 58.217 33.333 0.00 0.00 0.00 1.52
194 195 7.264373 ACTCATGCGGGATCTAATTTTAAAG 57.736 36.000 0.00 0.00 0.00 1.85
195 196 7.054124 ACTCATGCGGGATCTAATTTTAAAGA 58.946 34.615 0.00 0.00 0.00 2.52
196 197 7.721399 ACTCATGCGGGATCTAATTTTAAAGAT 59.279 33.333 0.00 0.00 35.15 2.40
197 198 7.874940 TCATGCGGGATCTAATTTTAAAGATG 58.125 34.615 0.00 0.00 32.60 2.90
198 199 7.502226 TCATGCGGGATCTAATTTTAAAGATGT 59.498 33.333 0.00 0.00 32.60 3.06
199 200 7.259290 TGCGGGATCTAATTTTAAAGATGTC 57.741 36.000 0.00 0.00 32.60 3.06
200 201 6.018262 TGCGGGATCTAATTTTAAAGATGTCG 60.018 38.462 0.00 0.08 32.60 4.35
201 202 6.363473 CGGGATCTAATTTTAAAGATGTCGC 58.637 40.000 0.00 0.00 32.60 5.19
202 203 6.565999 CGGGATCTAATTTTAAAGATGTCGCC 60.566 42.308 0.00 0.00 32.60 5.54
203 204 6.363473 GGATCTAATTTTAAAGATGTCGCCG 58.637 40.000 0.00 0.00 32.60 6.46
204 205 6.018180 GGATCTAATTTTAAAGATGTCGCCGT 60.018 38.462 0.00 0.00 32.60 5.68
205 206 7.170320 GGATCTAATTTTAAAGATGTCGCCGTA 59.830 37.037 0.00 0.00 32.60 4.02
206 207 7.830940 TCTAATTTTAAAGATGTCGCCGTAA 57.169 32.000 0.00 0.00 0.00 3.18
207 208 8.254178 TCTAATTTTAAAGATGTCGCCGTAAA 57.746 30.769 0.00 0.00 0.00 2.01
208 209 8.385111 TCTAATTTTAAAGATGTCGCCGTAAAG 58.615 33.333 0.00 0.00 0.00 1.85
209 210 6.730960 ATTTTAAAGATGTCGCCGTAAAGA 57.269 33.333 0.00 0.00 0.00 2.52
210 211 6.542574 TTTTAAAGATGTCGCCGTAAAGAA 57.457 33.333 0.00 0.00 0.00 2.52
211 212 6.730960 TTTAAAGATGTCGCCGTAAAGAAT 57.269 33.333 0.00 0.00 0.00 2.40
212 213 6.730960 TTAAAGATGTCGCCGTAAAGAATT 57.269 33.333 0.00 0.00 0.00 2.17
213 214 4.859629 AAGATGTCGCCGTAAAGAATTC 57.140 40.909 0.00 0.00 0.00 2.17
214 215 3.857052 AGATGTCGCCGTAAAGAATTCA 58.143 40.909 8.44 0.00 0.00 2.57
215 216 4.250464 AGATGTCGCCGTAAAGAATTCAA 58.750 39.130 8.44 0.00 0.00 2.69
216 217 3.799137 TGTCGCCGTAAAGAATTCAAC 57.201 42.857 8.44 2.09 0.00 3.18
217 218 3.132160 TGTCGCCGTAAAGAATTCAACA 58.868 40.909 8.44 0.00 0.00 3.33
218 219 3.560481 TGTCGCCGTAAAGAATTCAACAA 59.440 39.130 8.44 0.00 0.00 2.83
219 220 4.214545 TGTCGCCGTAAAGAATTCAACAAT 59.785 37.500 8.44 0.00 0.00 2.71
220 221 4.553429 GTCGCCGTAAAGAATTCAACAATG 59.447 41.667 8.44 0.00 0.00 2.82
221 222 4.452795 TCGCCGTAAAGAATTCAACAATGA 59.547 37.500 8.44 0.00 0.00 2.57
233 234 4.535526 TCAACAATGAAGACGGATCTGA 57.464 40.909 9.00 0.00 34.48 3.27
234 235 4.893608 TCAACAATGAAGACGGATCTGAA 58.106 39.130 9.00 0.00 34.48 3.02
235 236 5.491070 TCAACAATGAAGACGGATCTGAAT 58.509 37.500 9.00 0.00 34.48 2.57
236 237 5.939883 TCAACAATGAAGACGGATCTGAATT 59.060 36.000 9.00 1.98 34.48 2.17
237 238 6.092670 TCAACAATGAAGACGGATCTGAATTC 59.907 38.462 9.00 11.79 34.48 2.17
238 239 4.878397 ACAATGAAGACGGATCTGAATTCC 59.122 41.667 9.00 0.00 34.48 3.01
239 240 4.760530 ATGAAGACGGATCTGAATTCCA 57.239 40.909 9.00 0.04 34.48 3.53
240 241 4.551702 TGAAGACGGATCTGAATTCCAA 57.448 40.909 9.00 0.00 34.48 3.53
241 242 4.253685 TGAAGACGGATCTGAATTCCAAC 58.746 43.478 9.00 0.00 34.48 3.77
242 243 2.893637 AGACGGATCTGAATTCCAACG 58.106 47.619 9.00 3.57 32.29 4.10
243 244 1.327764 GACGGATCTGAATTCCAACGC 59.672 52.381 9.00 0.00 32.45 4.84
244 245 0.301687 CGGATCTGAATTCCAACGCG 59.698 55.000 3.53 3.53 32.45 6.01
245 246 0.028110 GGATCTGAATTCCAACGCGC 59.972 55.000 5.73 0.00 33.21 6.86
246 247 0.315382 GATCTGAATTCCAACGCGCG 60.315 55.000 30.96 30.96 0.00 6.86
247 248 1.705337 ATCTGAATTCCAACGCGCGG 61.705 55.000 35.22 17.35 0.00 6.46
248 249 2.666862 TGAATTCCAACGCGCGGT 60.667 55.556 35.22 28.24 0.00 5.68
249 250 2.182614 CTGAATTCCAACGCGCGGTT 62.183 55.000 35.22 21.99 40.22 4.44
250 251 1.081708 GAATTCCAACGCGCGGTTT 60.082 52.632 35.22 19.44 36.49 3.27
251 252 1.334288 GAATTCCAACGCGCGGTTTG 61.334 55.000 35.22 27.79 36.49 2.93
252 253 1.787057 AATTCCAACGCGCGGTTTGA 61.787 50.000 35.22 23.41 36.49 2.69
253 254 2.182614 ATTCCAACGCGCGGTTTGAG 62.183 55.000 35.22 21.21 36.49 3.02
254 255 3.342627 CCAACGCGCGGTTTGAGA 61.343 61.111 35.22 0.00 36.49 3.27
255 256 2.170985 CAACGCGCGGTTTGAGAG 59.829 61.111 35.22 10.99 36.49 3.20
256 257 2.028484 AACGCGCGGTTTGAGAGA 59.972 55.556 35.22 0.00 34.41 3.10
257 258 1.374252 AACGCGCGGTTTGAGAGAT 60.374 52.632 35.22 5.42 34.41 2.75
258 259 0.108992 AACGCGCGGTTTGAGAGATA 60.109 50.000 35.22 0.00 34.41 1.98
259 260 0.102481 ACGCGCGGTTTGAGAGATAT 59.898 50.000 35.22 4.55 0.00 1.63
260 261 0.504384 CGCGCGGTTTGAGAGATATG 59.496 55.000 24.84 0.00 0.00 1.78
261 262 1.852942 GCGCGGTTTGAGAGATATGA 58.147 50.000 8.83 0.00 0.00 2.15
262 263 2.408050 GCGCGGTTTGAGAGATATGAT 58.592 47.619 8.83 0.00 0.00 2.45
263 264 2.802816 GCGCGGTTTGAGAGATATGATT 59.197 45.455 8.83 0.00 0.00 2.57
264 265 3.248602 GCGCGGTTTGAGAGATATGATTT 59.751 43.478 8.83 0.00 0.00 2.17
265 266 4.260784 GCGCGGTTTGAGAGATATGATTTT 60.261 41.667 8.83 0.00 0.00 1.82
266 267 5.730568 GCGCGGTTTGAGAGATATGATTTTT 60.731 40.000 8.83 0.00 0.00 1.94
355 356 7.575365 TGTGAATACATTAAATGCTGATAGCG 58.425 34.615 0.00 0.00 46.26 4.26
356 357 7.440856 TGTGAATACATTAAATGCTGATAGCGA 59.559 33.333 0.00 0.00 46.26 4.93
357 358 8.446273 GTGAATACATTAAATGCTGATAGCGAT 58.554 33.333 0.00 0.00 46.26 4.58
358 359 9.651913 TGAATACATTAAATGCTGATAGCGATA 57.348 29.630 0.00 0.00 46.26 2.92
363 364 8.873830 ACATTAAATGCTGATAGCGATATACAC 58.126 33.333 0.00 0.00 46.26 2.90
364 365 9.091784 CATTAAATGCTGATAGCGATATACACT 57.908 33.333 0.00 0.00 46.26 3.55
366 367 9.788960 TTAAATGCTGATAGCGATATACACTAG 57.211 33.333 0.00 0.00 46.26 2.57
367 368 5.236655 TGCTGATAGCGATATACACTAGC 57.763 43.478 0.00 0.32 46.26 3.42
368 369 4.700213 TGCTGATAGCGATATACACTAGCA 59.300 41.667 10.13 10.13 46.26 3.49
373 374 8.732746 TGATAGCGATATACACTAGCAGATAA 57.267 34.615 0.00 0.00 29.60 1.75
374 375 9.174166 TGATAGCGATATACACTAGCAGATAAA 57.826 33.333 0.00 0.00 29.60 1.40
400 401 9.512588 AAAACAGCTCATATATGGATAAGAAGG 57.487 33.333 12.78 0.00 0.00 3.46
401 402 6.648192 ACAGCTCATATATGGATAAGAAGGC 58.352 40.000 12.78 4.38 0.00 4.35
402 403 6.443206 ACAGCTCATATATGGATAAGAAGGCT 59.557 38.462 12.78 6.20 0.00 4.58
403 404 6.762187 CAGCTCATATATGGATAAGAAGGCTG 59.238 42.308 12.78 12.68 32.71 4.85
404 405 6.054295 GCTCATATATGGATAAGAAGGCTGG 58.946 44.000 12.78 0.00 0.00 4.85
405 406 5.994250 TCATATATGGATAAGAAGGCTGGC 58.006 41.667 12.78 0.00 0.00 4.85
406 407 3.728385 ATATGGATAAGAAGGCTGGCC 57.272 47.619 3.00 3.00 0.00 5.36
407 408 0.109342 ATGGATAAGAAGGCTGGCCG 59.891 55.000 5.93 0.00 41.95 6.13
408 409 1.894282 GGATAAGAAGGCTGGCCGC 60.894 63.158 10.60 10.60 41.95 6.53
409 410 1.147153 GATAAGAAGGCTGGCCGCT 59.853 57.895 17.07 5.21 41.95 5.52
410 411 0.882484 GATAAGAAGGCTGGCCGCTC 60.882 60.000 17.07 9.36 41.95 5.03
411 412 2.650813 ATAAGAAGGCTGGCCGCTCG 62.651 60.000 17.07 0.00 41.95 5.03
418 419 4.421479 CTGGCCGCTCGTTCTCGT 62.421 66.667 0.00 0.00 38.33 4.18
419 420 4.415332 TGGCCGCTCGTTCTCGTC 62.415 66.667 0.00 0.00 38.33 4.20
420 421 4.415332 GGCCGCTCGTTCTCGTCA 62.415 66.667 0.00 0.00 38.33 4.35
421 422 2.430244 GCCGCTCGTTCTCGTCAA 60.430 61.111 0.00 0.00 38.33 3.18
422 423 1.805945 GCCGCTCGTTCTCGTCAAT 60.806 57.895 0.00 0.00 38.33 2.57
423 424 1.352156 GCCGCTCGTTCTCGTCAATT 61.352 55.000 0.00 0.00 38.33 2.32
424 425 1.904144 CCGCTCGTTCTCGTCAATTA 58.096 50.000 0.00 0.00 38.33 1.40
425 426 1.846782 CCGCTCGTTCTCGTCAATTAG 59.153 52.381 0.00 0.00 38.33 1.73
426 427 1.253034 CGCTCGTTCTCGTCAATTAGC 59.747 52.381 0.00 0.00 38.33 3.09
427 428 1.253034 GCTCGTTCTCGTCAATTAGCG 59.747 52.381 0.00 0.00 38.33 4.26
428 429 1.253034 CTCGTTCTCGTCAATTAGCGC 59.747 52.381 0.00 0.00 38.33 5.92
429 430 0.045002 CGTTCTCGTCAATTAGCGCG 60.045 55.000 0.00 0.00 0.00 6.86
430 431 0.314339 GTTCTCGTCAATTAGCGCGC 60.314 55.000 26.66 26.66 0.00 6.86
431 432 1.739093 TTCTCGTCAATTAGCGCGCG 61.739 55.000 28.44 28.44 0.00 6.86
432 433 2.202505 TCGTCAATTAGCGCGCGA 60.203 55.556 37.18 19.65 0.00 5.87
433 434 2.055095 CGTCAATTAGCGCGCGAC 60.055 61.111 37.18 24.64 0.00 5.19
434 435 2.320044 GTCAATTAGCGCGCGACC 59.680 61.111 37.18 17.71 0.00 4.79
435 436 2.125872 TCAATTAGCGCGCGACCA 60.126 55.556 37.18 16.45 0.00 4.02
436 437 2.021380 CAATTAGCGCGCGACCAC 59.979 61.111 37.18 16.41 0.00 4.16
437 438 2.125673 AATTAGCGCGCGACCACT 60.126 55.556 37.18 23.22 0.00 4.00
438 439 1.740296 AATTAGCGCGCGACCACTT 60.740 52.632 37.18 16.27 0.00 3.16
439 440 1.296056 AATTAGCGCGCGACCACTTT 61.296 50.000 37.18 15.30 0.00 2.66
440 441 1.296056 ATTAGCGCGCGACCACTTTT 61.296 50.000 37.18 7.25 0.00 2.27
441 442 1.500512 TTAGCGCGCGACCACTTTTT 61.501 50.000 37.18 6.40 0.00 1.94
442 443 0.666880 TAGCGCGCGACCACTTTTTA 60.667 50.000 37.18 5.24 0.00 1.52
443 444 1.509162 GCGCGCGACCACTTTTTAG 60.509 57.895 37.18 0.00 0.00 1.85
444 445 1.893168 GCGCGCGACCACTTTTTAGA 61.893 55.000 37.18 0.00 0.00 2.10
445 446 0.719465 CGCGCGACCACTTTTTAGAT 59.281 50.000 28.94 0.00 0.00 1.98
446 447 1.127951 CGCGCGACCACTTTTTAGATT 59.872 47.619 28.94 0.00 0.00 2.40
447 448 2.412325 CGCGCGACCACTTTTTAGATTT 60.412 45.455 28.94 0.00 0.00 2.17
448 449 3.561503 GCGCGACCACTTTTTAGATTTT 58.438 40.909 12.10 0.00 0.00 1.82
449 450 3.360758 GCGCGACCACTTTTTAGATTTTG 59.639 43.478 12.10 0.00 0.00 2.44
450 451 3.911964 CGCGACCACTTTTTAGATTTTGG 59.088 43.478 0.00 0.00 0.00 3.28
451 452 4.234574 GCGACCACTTTTTAGATTTTGGG 58.765 43.478 0.00 0.00 0.00 4.12
452 453 4.261867 GCGACCACTTTTTAGATTTTGGGT 60.262 41.667 0.00 0.00 0.00 4.51
453 454 5.048573 GCGACCACTTTTTAGATTTTGGGTA 60.049 40.000 0.00 0.00 0.00 3.69
454 455 6.349860 GCGACCACTTTTTAGATTTTGGGTAT 60.350 38.462 0.00 0.00 0.00 2.73
455 456 7.599171 CGACCACTTTTTAGATTTTGGGTATT 58.401 34.615 0.00 0.00 0.00 1.89
456 457 8.732531 CGACCACTTTTTAGATTTTGGGTATTA 58.267 33.333 0.00 0.00 0.00 0.98
494 495 6.757237 TGTATACAAAGAGTAAACCGAACCA 58.243 36.000 2.20 0.00 36.05 3.67
546 558 2.483106 CCTGCAACAATGACAGAGAGTG 59.517 50.000 0.00 0.00 34.58 3.51
576 588 3.246226 CGATGTTTGCTAGCCATGAGTAC 59.754 47.826 13.29 0.00 0.00 2.73
579 591 0.824109 TTGCTAGCCATGAGTACGCT 59.176 50.000 13.29 0.00 36.63 5.07
580 592 1.687563 TGCTAGCCATGAGTACGCTA 58.312 50.000 13.29 0.00 34.03 4.26
598 610 1.452953 TATAGGCGCACCGACAGAGG 61.453 60.000 10.83 0.00 42.76 3.69
599 611 3.803840 TATAGGCGCACCGACAGAGGA 62.804 57.143 10.83 0.00 42.76 3.71
611 623 2.029288 CAGAGGACATGCGTGCGTT 61.029 57.895 5.64 0.00 38.75 4.84
717 729 3.692576 GCTAGCTCATGATTTGCACTTG 58.307 45.455 7.70 0.00 0.00 3.16
718 730 3.488721 GCTAGCTCATGATTTGCACTTGG 60.489 47.826 7.70 0.00 0.00 3.61
746 826 4.013728 GAGAGAGAGAGAGTTGGTTGCTA 58.986 47.826 0.00 0.00 0.00 3.49
770 854 3.643763 CGTTCACTGTTGCTACTCTCTT 58.356 45.455 0.00 0.00 0.00 2.85
892 976 1.941209 GCTCAATTGACCGAGACAGCA 60.941 52.381 3.38 0.00 0.00 4.41
934 1018 0.456824 AGCGTGTGTATGCGTGAGAG 60.457 55.000 0.00 0.00 43.67 3.20
935 1019 0.456142 GCGTGTGTATGCGTGAGAGA 60.456 55.000 0.00 0.00 0.00 3.10
936 1020 1.539341 CGTGTGTATGCGTGAGAGAG 58.461 55.000 0.00 0.00 0.00 3.20
954 1041 2.519780 GACGAGGAGAGGGGCGAT 60.520 66.667 0.00 0.00 0.00 4.58
1371 1477 5.805486 GGTATACATACATACATGCGTCTGG 59.195 44.000 5.01 0.00 33.77 3.86
1657 1763 1.039233 CAGGCGCCCAATTCCATTCT 61.039 55.000 26.15 0.00 0.00 2.40
1868 2004 1.301953 AACGGCGGTGGTTTACTCC 60.302 57.895 13.24 0.00 0.00 3.85
2047 2183 1.525077 GTGGGCCACAGTTGTCGAA 60.525 57.895 31.26 0.00 34.08 3.71
2060 2196 0.323629 TGTCGAACCAGGAATGGGTC 59.676 55.000 2.08 2.08 42.12 4.46
2081 2217 0.308684 CGGGATCGAAATGGCACATG 59.691 55.000 0.00 0.00 40.85 3.21
2113 2249 2.444696 CATGGGTTGGGGCTGGAA 59.555 61.111 0.00 0.00 0.00 3.53
2121 2257 0.178873 TTGGGGCTGGAAGAGGTAGT 60.179 55.000 0.00 0.00 34.07 2.73
2122 2258 0.178873 TGGGGCTGGAAGAGGTAGTT 60.179 55.000 0.00 0.00 34.07 2.24
2123 2259 0.542333 GGGGCTGGAAGAGGTAGTTC 59.458 60.000 0.00 0.00 34.07 3.01
2124 2260 0.175989 GGGCTGGAAGAGGTAGTTCG 59.824 60.000 0.00 0.00 34.07 3.95
2125 2261 1.183549 GGCTGGAAGAGGTAGTTCGA 58.816 55.000 0.00 0.00 34.07 3.71
2126 2262 1.135053 GGCTGGAAGAGGTAGTTCGAC 60.135 57.143 0.00 0.00 34.07 4.20
2266 2402 2.885113 CTGATGGAGTCGTGCGGA 59.115 61.111 0.00 0.00 0.00 5.54
2384 2520 5.192927 TCGATCCATGTTTTAATTGAGGCT 58.807 37.500 0.00 0.00 0.00 4.58
2444 2580 7.400439 TGTCTTCTTGATCCAGAATTTCAGAT 58.600 34.615 9.51 0.75 32.21 2.90
2474 2610 6.330004 TGTCAGAAAGAAATGCATGCTAAA 57.670 33.333 20.33 0.00 0.00 1.85
2559 2695 7.201359 GCAGTAATATATACACTGTCGACATGC 60.201 40.741 20.40 16.10 41.39 4.06
2560 2696 8.023706 CAGTAATATATACACTGTCGACATGCT 58.976 37.037 20.40 5.98 35.91 3.79
2561 2697 8.237949 AGTAATATATACACTGTCGACATGCTC 58.762 37.037 20.40 0.00 0.00 4.26
2562 2698 6.825944 ATATATACACTGTCGACATGCTCT 57.174 37.500 20.40 6.99 0.00 4.09
2563 2699 2.636768 TACACTGTCGACATGCTCTG 57.363 50.000 20.40 8.75 0.00 3.35
2585 2721 6.260050 TCTGTTGTTTAAGTAAGGTCTGCTTG 59.740 38.462 0.00 0.00 0.00 4.01
2607 2743 7.096065 GCTTGAACTGTTCCATTTCAAATACAC 60.096 37.037 17.26 0.00 40.56 2.90
2641 2777 5.725325 TGATTCAGATGGTGCAAAAATGA 57.275 34.783 0.00 0.00 0.00 2.57
2644 2780 8.014070 TGATTCAGATGGTGCAAAAATGATAT 57.986 30.769 0.00 0.00 0.00 1.63
2646 2782 9.321562 GATTCAGATGGTGCAAAAATGATATTT 57.678 29.630 0.00 0.00 0.00 1.40
2648 2784 8.070034 TCAGATGGTGCAAAAATGATATTTCT 57.930 30.769 0.00 0.00 0.00 2.52
2672 2808 8.755977 TCTTTCGTCCCATAATATAATACTCCC 58.244 37.037 0.00 0.00 0.00 4.30
2673 2809 8.674925 TTTCGTCCCATAATATAATACTCCCT 57.325 34.615 0.00 0.00 0.00 4.20
2674 2810 7.893124 TCGTCCCATAATATAATACTCCCTC 57.107 40.000 0.00 0.00 0.00 4.30
2675 2811 6.837568 TCGTCCCATAATATAATACTCCCTCC 59.162 42.308 0.00 0.00 0.00 4.30
2676 2812 6.238953 CGTCCCATAATATAATACTCCCTCCG 60.239 46.154 0.00 0.00 0.00 4.63
2677 2813 6.610425 GTCCCATAATATAATACTCCCTCCGT 59.390 42.308 0.00 0.00 0.00 4.69
2678 2814 7.125356 GTCCCATAATATAATACTCCCTCCGTT 59.875 40.741 0.00 0.00 0.00 4.44
2679 2815 7.343833 TCCCATAATATAATACTCCCTCCGTTC 59.656 40.741 0.00 0.00 0.00 3.95
2680 2816 7.418712 CCCATAATATAATACTCCCTCCGTTCC 60.419 44.444 0.00 0.00 0.00 3.62
2681 2817 7.125204 CCATAATATAATACTCCCTCCGTTCCA 59.875 40.741 0.00 0.00 0.00 3.53
2682 2818 5.997384 ATATAATACTCCCTCCGTTCCAC 57.003 43.478 0.00 0.00 0.00 4.02
2683 2819 1.946984 AATACTCCCTCCGTTCCACA 58.053 50.000 0.00 0.00 0.00 4.17
2684 2820 1.946984 ATACTCCCTCCGTTCCACAA 58.053 50.000 0.00 0.00 0.00 3.33
2685 2821 1.946984 TACTCCCTCCGTTCCACAAT 58.053 50.000 0.00 0.00 0.00 2.71
2686 2822 0.324943 ACTCCCTCCGTTCCACAATG 59.675 55.000 0.00 0.00 0.00 2.82
2687 2823 0.324943 CTCCCTCCGTTCCACAATGT 59.675 55.000 0.00 0.00 0.00 2.71
2688 2824 1.553248 CTCCCTCCGTTCCACAATGTA 59.447 52.381 0.00 0.00 0.00 2.29
2689 2825 1.553248 TCCCTCCGTTCCACAATGTAG 59.447 52.381 0.00 0.00 0.00 2.74
2690 2826 1.369625 CCTCCGTTCCACAATGTAGC 58.630 55.000 0.00 0.00 0.00 3.58
2691 2827 0.999406 CTCCGTTCCACAATGTAGCG 59.001 55.000 0.00 0.00 0.00 4.26
2692 2828 1.017177 TCCGTTCCACAATGTAGCGC 61.017 55.000 0.00 0.00 0.00 5.92
2693 2829 1.295357 CCGTTCCACAATGTAGCGCA 61.295 55.000 11.47 0.00 0.00 6.09
2694 2830 0.726827 CGTTCCACAATGTAGCGCAT 59.273 50.000 11.47 0.00 40.03 4.73
2695 2831 1.930503 CGTTCCACAATGTAGCGCATA 59.069 47.619 11.47 0.00 36.67 3.14
2696 2832 2.543848 CGTTCCACAATGTAGCGCATAT 59.456 45.455 11.47 0.00 36.67 1.78
2697 2833 3.738791 CGTTCCACAATGTAGCGCATATA 59.261 43.478 11.47 0.00 36.67 0.86
2698 2834 4.143326 CGTTCCACAATGTAGCGCATATAG 60.143 45.833 11.47 0.00 36.67 1.31
2699 2835 4.864704 TCCACAATGTAGCGCATATAGA 57.135 40.909 11.47 0.00 36.67 1.98
2700 2836 5.405935 TCCACAATGTAGCGCATATAGAT 57.594 39.130 11.47 0.00 36.67 1.98
2701 2837 5.793817 TCCACAATGTAGCGCATATAGATT 58.206 37.500 11.47 0.41 36.67 2.40
2702 2838 6.230472 TCCACAATGTAGCGCATATAGATTT 58.770 36.000 11.47 0.00 36.67 2.17
2703 2839 6.710295 TCCACAATGTAGCGCATATAGATTTT 59.290 34.615 11.47 0.00 36.67 1.82
2704 2840 7.228507 TCCACAATGTAGCGCATATAGATTTTT 59.771 33.333 11.47 0.00 36.67 1.94
2749 2885 7.696992 ACTTTGACCAAGTTTGTAGAGAAAA 57.303 32.000 0.00 0.00 43.89 2.29
2750 2886 8.293699 ACTTTGACCAAGTTTGTAGAGAAAAT 57.706 30.769 0.00 0.00 43.89 1.82
2751 2887 8.406297 ACTTTGACCAAGTTTGTAGAGAAAATC 58.594 33.333 0.00 0.00 43.89 2.17
2752 2888 7.873719 TTGACCAAGTTTGTAGAGAAAATCA 57.126 32.000 0.00 0.00 0.00 2.57
2753 2889 8.463930 TTGACCAAGTTTGTAGAGAAAATCAT 57.536 30.769 0.00 0.00 0.00 2.45
2754 2890 9.567776 TTGACCAAGTTTGTAGAGAAAATCATA 57.432 29.630 0.00 0.00 0.00 2.15
2755 2891 9.739276 TGACCAAGTTTGTAGAGAAAATCATAT 57.261 29.630 0.00 0.00 0.00 1.78
2780 2916 9.692749 ATACATCTAGAATACCAAATACGTGTG 57.307 33.333 0.00 0.00 0.00 3.82
2781 2917 6.479001 ACATCTAGAATACCAAATACGTGTGC 59.521 38.462 0.00 0.00 0.00 4.57
2782 2918 6.216801 TCTAGAATACCAAATACGTGTGCT 57.783 37.500 0.00 0.00 0.00 4.40
2783 2919 6.636705 TCTAGAATACCAAATACGTGTGCTT 58.363 36.000 0.00 0.00 0.00 3.91
2784 2920 7.774134 TCTAGAATACCAAATACGTGTGCTTA 58.226 34.615 0.00 0.00 0.00 3.09
2785 2921 6.903883 AGAATACCAAATACGTGTGCTTAG 57.096 37.500 0.00 0.00 0.00 2.18
2786 2922 6.636705 AGAATACCAAATACGTGTGCTTAGA 58.363 36.000 0.00 0.00 0.00 2.10
2787 2923 7.272978 AGAATACCAAATACGTGTGCTTAGAT 58.727 34.615 0.00 0.00 0.00 1.98
2788 2924 8.418662 AGAATACCAAATACGTGTGCTTAGATA 58.581 33.333 0.00 0.00 0.00 1.98
2789 2925 7.941795 ATACCAAATACGTGTGCTTAGATAC 57.058 36.000 0.00 0.00 0.00 2.24
2790 2926 5.726397 ACCAAATACGTGTGCTTAGATACA 58.274 37.500 0.00 0.00 0.00 2.29
2791 2927 6.346096 ACCAAATACGTGTGCTTAGATACAT 58.654 36.000 0.00 0.00 0.00 2.29
2792 2928 6.479001 ACCAAATACGTGTGCTTAGATACATC 59.521 38.462 0.00 0.00 0.00 3.06
2793 2929 6.478673 CCAAATACGTGTGCTTAGATACATCA 59.521 38.462 0.00 0.00 0.00 3.07
2794 2930 7.337718 CAAATACGTGTGCTTAGATACATCAC 58.662 38.462 0.00 0.00 0.00 3.06
2795 2931 4.450082 ACGTGTGCTTAGATACATCACA 57.550 40.909 0.00 0.00 35.57 3.58
2796 2932 4.816392 ACGTGTGCTTAGATACATCACAA 58.184 39.130 0.00 0.00 39.07 3.33
2797 2933 4.625742 ACGTGTGCTTAGATACATCACAAC 59.374 41.667 0.00 0.00 39.07 3.32
2798 2934 4.625311 CGTGTGCTTAGATACATCACAACA 59.375 41.667 0.00 0.00 39.07 3.33
2799 2935 5.444613 CGTGTGCTTAGATACATCACAACAC 60.445 44.000 0.00 0.00 39.07 3.32
2800 2936 5.408299 GTGTGCTTAGATACATCACAACACA 59.592 40.000 0.00 0.00 39.07 3.72
2801 2937 6.092670 GTGTGCTTAGATACATCACAACACAT 59.907 38.462 0.00 0.00 39.07 3.21
2802 2938 7.277760 GTGTGCTTAGATACATCACAACACATA 59.722 37.037 0.00 0.00 39.07 2.29
2803 2939 7.277760 TGTGCTTAGATACATCACAACACATAC 59.722 37.037 0.00 0.00 35.08 2.39
2804 2940 7.492669 GTGCTTAGATACATCACAACACATACT 59.507 37.037 0.00 0.00 0.00 2.12
2805 2941 8.040727 TGCTTAGATACATCACAACACATACTT 58.959 33.333 0.00 0.00 0.00 2.24
2806 2942 8.883731 GCTTAGATACATCACAACACATACTTT 58.116 33.333 0.00 0.00 0.00 2.66
2808 2944 9.936759 TTAGATACATCACAACACATACTTTCA 57.063 29.630 0.00 0.00 0.00 2.69
2903 3039 7.851508 TGACTTTGTAGAAAATCTATATGCGC 58.148 34.615 0.00 0.00 30.76 6.09
2904 3040 7.710907 TGACTTTGTAGAAAATCTATATGCGCT 59.289 33.333 9.73 0.00 30.76 5.92
2905 3041 9.193133 GACTTTGTAGAAAATCTATATGCGCTA 57.807 33.333 9.73 0.00 30.76 4.26
2906 3042 8.979574 ACTTTGTAGAAAATCTATATGCGCTAC 58.020 33.333 9.73 0.00 30.76 3.58
2907 3043 8.880878 TTTGTAGAAAATCTATATGCGCTACA 57.119 30.769 9.73 0.63 36.25 2.74
2908 3044 9.489084 TTTGTAGAAAATCTATATGCGCTACAT 57.511 29.630 9.73 1.21 43.18 2.29
2909 3045 9.489084 TTGTAGAAAATCTATATGCGCTACATT 57.511 29.630 9.73 0.00 40.38 2.71
2913 3049 9.102757 AGAAAATCTATATGCGCTACATTATGG 57.897 33.333 9.73 0.89 40.38 2.74
2914 3050 9.098355 GAAAATCTATATGCGCTACATTATGGA 57.902 33.333 9.73 6.23 40.38 3.41
2915 3051 9.448438 AAAATCTATATGCGCTACATTATGGAA 57.552 29.630 9.73 0.00 40.38 3.53
2916 3052 8.425577 AATCTATATGCGCTACATTATGGAAC 57.574 34.615 9.73 0.00 40.38 3.62
2917 3053 6.033966 TCTATATGCGCTACATTATGGAACG 58.966 40.000 9.73 0.00 40.38 3.95
2918 3054 1.577468 TGCGCTACATTATGGAACGG 58.423 50.000 9.73 0.00 0.00 4.44
2919 3055 1.137282 TGCGCTACATTATGGAACGGA 59.863 47.619 9.73 0.00 0.00 4.69
2920 3056 1.792949 GCGCTACATTATGGAACGGAG 59.207 52.381 0.00 0.00 0.00 4.63
2921 3057 2.404215 CGCTACATTATGGAACGGAGG 58.596 52.381 0.00 0.00 0.00 4.30
2922 3058 2.767505 GCTACATTATGGAACGGAGGG 58.232 52.381 0.00 0.00 0.00 4.30
2923 3059 2.367567 GCTACATTATGGAACGGAGGGA 59.632 50.000 0.00 0.00 0.00 4.20
2924 3060 3.555168 GCTACATTATGGAACGGAGGGAG 60.555 52.174 0.00 0.00 0.00 4.30
2925 3061 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
2937 3073 2.677037 CGGAGGGAGTAGCGTTTTTGAT 60.677 50.000 0.00 0.00 0.00 2.57
2939 3075 4.704965 GGAGGGAGTAGCGTTTTTGATAT 58.295 43.478 0.00 0.00 0.00 1.63
2947 3083 8.538039 GGAGTAGCGTTTTTGATATTAGTGTAC 58.462 37.037 0.00 0.00 0.00 2.90
2972 3109 6.278363 TGTAAAGCGGAGGAGTATATTTCAC 58.722 40.000 0.00 0.00 0.00 3.18
2977 3114 4.022242 GCGGAGGAGTATATTTCACAGCTA 60.022 45.833 0.00 0.00 0.00 3.32
3121 3258 5.991328 TCACTCTTTTTAGTGCAAGACAG 57.009 39.130 0.00 0.00 45.34 3.51
3133 3270 2.423185 TGCAAGACAGGTTGTTTGTCAG 59.577 45.455 7.96 1.89 45.72 3.51
3170 3307 4.450082 ACAACTTTCTCCAACAAACACC 57.550 40.909 0.00 0.00 0.00 4.16
3212 3350 6.311445 CCATATAAAGCGCCTTCTGTATGTAG 59.689 42.308 2.29 0.00 0.00 2.74
3213 3351 2.604046 AAGCGCCTTCTGTATGTAGG 57.396 50.000 2.29 0.00 36.44 3.18
3214 3352 1.776662 AGCGCCTTCTGTATGTAGGA 58.223 50.000 2.29 0.00 35.50 2.94
3215 3353 1.409427 AGCGCCTTCTGTATGTAGGAC 59.591 52.381 2.29 0.00 35.50 3.85
3216 3354 1.864435 GCGCCTTCTGTATGTAGGACG 60.864 57.143 0.00 0.00 35.50 4.79
3217 3355 1.854227 GCCTTCTGTATGTAGGACGC 58.146 55.000 0.00 0.00 35.50 5.19
3218 3356 1.864435 GCCTTCTGTATGTAGGACGCG 60.864 57.143 3.53 3.53 35.50 6.01
3219 3357 1.404391 CCTTCTGTATGTAGGACGCGT 59.596 52.381 13.85 13.85 35.50 6.01
3220 3358 2.541178 CCTTCTGTATGTAGGACGCGTC 60.541 54.545 30.67 30.67 35.50 5.19
3221 3359 2.034104 TCTGTATGTAGGACGCGTCT 57.966 50.000 35.50 23.99 0.00 4.18
3222 3360 3.183793 TCTGTATGTAGGACGCGTCTA 57.816 47.619 35.50 23.01 0.00 2.59
3223 3361 3.129109 TCTGTATGTAGGACGCGTCTAG 58.871 50.000 35.50 20.02 0.00 2.43
3224 3362 1.600957 TGTATGTAGGACGCGTCTAGC 59.399 52.381 35.50 24.68 43.95 3.42
3233 3371 2.740826 GCGTCTAGCGGGCAAACA 60.741 61.111 8.31 0.00 41.69 2.83
3234 3372 2.740714 GCGTCTAGCGGGCAAACAG 61.741 63.158 8.31 0.00 41.69 3.16
3235 3373 2.740714 CGTCTAGCGGGCAAACAGC 61.741 63.158 0.00 0.00 44.65 4.40
3244 3382 3.350377 GCAAACAGCTGCCCGTTA 58.650 55.556 15.27 0.00 41.15 3.18
3245 3383 1.210155 GCAAACAGCTGCCCGTTAG 59.790 57.895 15.27 0.00 41.15 2.34
3246 3384 1.210155 CAAACAGCTGCCCGTTAGC 59.790 57.895 15.27 0.00 41.43 3.09
3247 3385 1.971695 AAACAGCTGCCCGTTAGCC 60.972 57.895 15.27 0.00 42.07 3.93
3248 3386 3.920093 AACAGCTGCCCGTTAGCCC 62.920 63.158 15.27 0.00 42.07 5.19
3249 3387 4.101448 CAGCTGCCCGTTAGCCCT 62.101 66.667 0.00 0.00 42.07 5.19
3250 3388 4.101448 AGCTGCCCGTTAGCCCTG 62.101 66.667 0.00 0.00 42.07 4.45
3252 3390 4.408821 CTGCCCGTTAGCCCTGCA 62.409 66.667 0.00 0.00 0.00 4.41
3253 3391 3.704231 CTGCCCGTTAGCCCTGCAT 62.704 63.158 0.00 0.00 0.00 3.96
3254 3392 3.211963 GCCCGTTAGCCCTGCATG 61.212 66.667 0.00 0.00 0.00 4.06
3255 3393 2.516930 CCCGTTAGCCCTGCATGG 60.517 66.667 3.22 3.22 0.00 3.66
3268 3406 2.906897 CATGGCGGCCGGCTATTT 60.907 61.111 45.12 27.46 40.31 1.40
3269 3407 2.123897 ATGGCGGCCGGCTATTTT 60.124 55.556 45.12 25.14 40.31 1.82
3270 3408 1.149627 ATGGCGGCCGGCTATTTTA 59.850 52.632 45.12 28.90 40.31 1.52
3271 3409 0.466555 ATGGCGGCCGGCTATTTTAA 60.467 50.000 45.12 28.17 40.31 1.52
3272 3410 1.098712 TGGCGGCCGGCTATTTTAAG 61.099 55.000 45.12 7.41 42.94 1.85
3273 3411 0.816421 GGCGGCCGGCTATTTTAAGA 60.816 55.000 41.19 0.00 42.94 2.10
3274 3412 1.018910 GCGGCCGGCTATTTTAAGAA 58.981 50.000 29.38 0.00 39.11 2.52
3275 3413 1.607148 GCGGCCGGCTATTTTAAGAAT 59.393 47.619 29.38 0.00 39.11 2.40
3276 3414 2.034179 GCGGCCGGCTATTTTAAGAATT 59.966 45.455 29.38 0.00 39.11 2.17
3277 3415 3.490249 GCGGCCGGCTATTTTAAGAATTT 60.490 43.478 29.38 0.00 39.11 1.82
3278 3416 4.678622 CGGCCGGCTATTTTAAGAATTTT 58.321 39.130 28.56 0.00 0.00 1.82
3279 3417 5.106442 CGGCCGGCTATTTTAAGAATTTTT 58.894 37.500 28.56 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.895232 AGTAGTCCTAGTTGGCACATG 57.105 47.619 0.00 0.00 39.30 3.21
1 2 4.962995 ACATAGTAGTCCTAGTTGGCACAT 59.037 41.667 0.00 0.00 39.30 3.21
2 3 4.159693 CACATAGTAGTCCTAGTTGGCACA 59.840 45.833 0.00 0.00 35.26 4.57
3 4 4.159879 ACACATAGTAGTCCTAGTTGGCAC 59.840 45.833 0.00 0.00 35.26 5.01
4 5 4.159693 CACACATAGTAGTCCTAGTTGGCA 59.840 45.833 0.00 0.00 35.26 4.92
5 6 4.683832 CACACATAGTAGTCCTAGTTGGC 58.316 47.826 0.00 0.00 35.26 4.52
6 7 4.159693 TGCACACATAGTAGTCCTAGTTGG 59.840 45.833 0.00 0.00 37.10 3.77
7 8 5.324784 TGCACACATAGTAGTCCTAGTTG 57.675 43.478 0.00 0.00 0.00 3.16
8 9 5.480772 AGTTGCACACATAGTAGTCCTAGTT 59.519 40.000 0.00 0.00 0.00 2.24
9 10 5.017490 AGTTGCACACATAGTAGTCCTAGT 58.983 41.667 0.00 0.00 0.00 2.57
10 11 5.584253 AGTTGCACACATAGTAGTCCTAG 57.416 43.478 0.00 0.00 0.00 3.02
11 12 8.756486 TTATAGTTGCACACATAGTAGTCCTA 57.244 34.615 0.00 0.00 0.00 2.94
12 13 7.655521 TTATAGTTGCACACATAGTAGTCCT 57.344 36.000 0.00 0.00 0.00 3.85
13 14 7.762615 TGTTTATAGTTGCACACATAGTAGTCC 59.237 37.037 0.00 0.00 0.00 3.85
14 15 8.697846 TGTTTATAGTTGCACACATAGTAGTC 57.302 34.615 0.00 0.00 0.00 2.59
15 16 9.667107 AATGTTTATAGTTGCACACATAGTAGT 57.333 29.630 0.00 0.00 0.00 2.73
16 17 9.920826 CAATGTTTATAGTTGCACACATAGTAG 57.079 33.333 0.00 0.00 0.00 2.57
17 18 9.443323 ACAATGTTTATAGTTGCACACATAGTA 57.557 29.630 0.00 0.00 0.00 1.82
18 19 8.236586 CACAATGTTTATAGTTGCACACATAGT 58.763 33.333 0.00 0.00 0.00 2.12
19 20 7.697710 CCACAATGTTTATAGTTGCACACATAG 59.302 37.037 0.00 0.00 0.00 2.23
20 21 7.391833 TCCACAATGTTTATAGTTGCACACATA 59.608 33.333 0.00 0.00 0.00 2.29
21 22 6.208402 TCCACAATGTTTATAGTTGCACACAT 59.792 34.615 0.00 0.00 0.00 3.21
22 23 5.532779 TCCACAATGTTTATAGTTGCACACA 59.467 36.000 0.00 0.00 0.00 3.72
23 24 6.007936 TCCACAATGTTTATAGTTGCACAC 57.992 37.500 0.00 0.00 0.00 3.82
24 25 6.619744 CATCCACAATGTTTATAGTTGCACA 58.380 36.000 0.00 0.00 0.00 4.57
25 26 5.516339 GCATCCACAATGTTTATAGTTGCAC 59.484 40.000 0.00 0.00 37.71 4.57
26 27 5.184671 TGCATCCACAATGTTTATAGTTGCA 59.815 36.000 0.00 0.00 37.71 4.08
27 28 5.649557 TGCATCCACAATGTTTATAGTTGC 58.350 37.500 0.00 0.00 37.71 4.17
28 29 5.745294 GCTGCATCCACAATGTTTATAGTTG 59.255 40.000 0.00 0.00 37.71 3.16
29 30 5.653769 AGCTGCATCCACAATGTTTATAGTT 59.346 36.000 1.02 0.00 37.71 2.24
30 31 5.195940 AGCTGCATCCACAATGTTTATAGT 58.804 37.500 1.02 0.00 37.71 2.12
31 32 5.278169 GGAGCTGCATCCACAATGTTTATAG 60.278 44.000 0.00 0.00 39.34 1.31
32 33 4.580167 GGAGCTGCATCCACAATGTTTATA 59.420 41.667 0.00 0.00 39.34 0.98
33 34 3.382546 GGAGCTGCATCCACAATGTTTAT 59.617 43.478 0.00 0.00 39.34 1.40
34 35 2.754552 GGAGCTGCATCCACAATGTTTA 59.245 45.455 0.00 0.00 39.34 2.01
35 36 1.547372 GGAGCTGCATCCACAATGTTT 59.453 47.619 0.00 0.00 39.34 2.83
36 37 1.180029 GGAGCTGCATCCACAATGTT 58.820 50.000 0.00 0.00 39.34 2.71
37 38 0.038599 TGGAGCTGCATCCACAATGT 59.961 50.000 2.72 0.00 44.56 2.71
38 39 2.876581 TGGAGCTGCATCCACAATG 58.123 52.632 2.72 0.00 44.56 2.82
79 80 9.391643 TGTGCAACTTTAATACTGCATGATGCA 62.392 37.037 20.09 20.09 45.45 3.96
80 81 5.230726 GTGCAACTTTAATACTGCATGATGC 59.769 40.000 11.12 11.12 45.77 3.91
81 82 6.324042 TGTGCAACTTTAATACTGCATGATG 58.676 36.000 0.00 0.00 45.77 3.07
82 83 6.513806 TGTGCAACTTTAATACTGCATGAT 57.486 33.333 0.00 0.00 45.77 2.45
83 84 5.956068 TGTGCAACTTTAATACTGCATGA 57.044 34.783 0.00 0.00 45.77 3.07
84 85 6.400303 GCTTTGTGCAACTTTAATACTGCATG 60.400 38.462 8.55 0.00 45.77 4.06
85 86 5.634859 GCTTTGTGCAACTTTAATACTGCAT 59.365 36.000 8.55 0.00 45.77 3.96
86 87 4.981674 GCTTTGTGCAACTTTAATACTGCA 59.018 37.500 0.00 2.67 42.28 4.41
87 88 5.500740 GCTTTGTGCAACTTTAATACTGC 57.499 39.130 0.00 0.00 42.31 4.40
101 102 3.621794 CAACTTCAGTACTGCTTTGTGC 58.378 45.455 18.45 0.00 43.25 4.57
102 103 3.065233 TGCAACTTCAGTACTGCTTTGTG 59.935 43.478 18.45 12.30 34.01 3.33
103 104 3.065371 GTGCAACTTCAGTACTGCTTTGT 59.935 43.478 18.45 10.38 34.01 2.83
104 105 3.065233 TGTGCAACTTCAGTACTGCTTTG 59.935 43.478 18.45 18.80 38.04 2.77
105 106 3.278574 TGTGCAACTTCAGTACTGCTTT 58.721 40.909 18.45 7.70 38.04 3.51
106 107 2.917933 TGTGCAACTTCAGTACTGCTT 58.082 42.857 18.45 6.26 38.04 3.91
107 108 2.620251 TGTGCAACTTCAGTACTGCT 57.380 45.000 18.45 0.00 38.04 4.24
108 109 3.904136 ATTGTGCAACTTCAGTACTGC 57.096 42.857 18.45 6.79 38.04 4.40
109 110 6.508563 CGCTATATTGTGCAACTTCAGTACTG 60.509 42.308 17.17 17.17 38.04 2.74
110 111 5.520288 CGCTATATTGTGCAACTTCAGTACT 59.480 40.000 0.00 0.00 38.04 2.73
111 112 5.728255 CGCTATATTGTGCAACTTCAGTAC 58.272 41.667 0.00 0.00 38.04 2.73
112 113 4.270084 GCGCTATATTGTGCAACTTCAGTA 59.730 41.667 16.26 0.00 42.40 2.74
113 114 3.063997 GCGCTATATTGTGCAACTTCAGT 59.936 43.478 16.26 0.00 42.40 3.41
114 115 3.611517 GCGCTATATTGTGCAACTTCAG 58.388 45.455 16.26 0.00 42.40 3.02
115 116 2.030335 CGCGCTATATTGTGCAACTTCA 59.970 45.455 19.99 0.00 42.93 3.02
116 117 2.284150 TCGCGCTATATTGTGCAACTTC 59.716 45.455 19.99 0.00 42.93 3.01
117 118 2.276201 TCGCGCTATATTGTGCAACTT 58.724 42.857 19.99 0.00 42.93 2.66
118 119 1.934589 TCGCGCTATATTGTGCAACT 58.065 45.000 19.99 0.00 42.93 3.16
119 120 2.730183 TTCGCGCTATATTGTGCAAC 57.270 45.000 19.99 0.89 42.93 4.17
120 121 2.675844 ACTTTCGCGCTATATTGTGCAA 59.324 40.909 19.99 11.66 42.93 4.08
121 122 2.276201 ACTTTCGCGCTATATTGTGCA 58.724 42.857 19.99 7.02 42.93 4.57
122 123 3.029074 CAACTTTCGCGCTATATTGTGC 58.971 45.455 11.97 11.97 39.78 4.57
123 124 3.607439 CCAACTTTCGCGCTATATTGTG 58.393 45.455 5.56 0.00 0.00 3.33
124 125 2.031683 GCCAACTTTCGCGCTATATTGT 59.968 45.455 5.56 0.00 0.00 2.71
125 126 2.031560 TGCCAACTTTCGCGCTATATTG 59.968 45.455 5.56 3.58 0.00 1.90
126 127 2.285083 TGCCAACTTTCGCGCTATATT 58.715 42.857 5.56 0.00 0.00 1.28
127 128 1.948104 TGCCAACTTTCGCGCTATAT 58.052 45.000 5.56 0.00 0.00 0.86
128 129 1.864711 GATGCCAACTTTCGCGCTATA 59.135 47.619 5.56 0.00 0.00 1.31
129 130 0.657840 GATGCCAACTTTCGCGCTAT 59.342 50.000 5.56 0.00 0.00 2.97
130 131 0.672091 TGATGCCAACTTTCGCGCTA 60.672 50.000 5.56 0.00 0.00 4.26
131 132 1.514678 TTGATGCCAACTTTCGCGCT 61.515 50.000 5.56 0.00 0.00 5.92
132 133 0.662970 TTTGATGCCAACTTTCGCGC 60.663 50.000 0.00 0.00 30.88 6.86
133 134 1.764851 TTTTGATGCCAACTTTCGCG 58.235 45.000 0.00 0.00 30.88 5.87
151 152 7.060633 GCATGAGTATGTTTCGACGAAATTTTT 59.939 33.333 24.48 12.67 36.65 1.94
152 153 6.523201 GCATGAGTATGTTTCGACGAAATTTT 59.477 34.615 24.48 14.82 36.65 1.82
153 154 6.021596 GCATGAGTATGTTTCGACGAAATTT 58.978 36.000 24.48 16.99 36.65 1.82
154 155 5.560148 GCATGAGTATGTTTCGACGAAATT 58.440 37.500 24.48 17.31 36.65 1.82
155 156 4.259810 CGCATGAGTATGTTTCGACGAAAT 60.260 41.667 24.48 13.13 36.65 2.17
156 157 3.060230 CGCATGAGTATGTTTCGACGAAA 59.940 43.478 18.66 18.66 36.65 3.46
157 158 2.596862 CGCATGAGTATGTTTCGACGAA 59.403 45.455 6.10 6.10 36.65 3.85
158 159 2.182014 CGCATGAGTATGTTTCGACGA 58.818 47.619 0.00 0.00 36.65 4.20
159 160 1.255342 CCGCATGAGTATGTTTCGACG 59.745 52.381 0.00 0.00 36.65 5.12
160 161 1.593006 CCCGCATGAGTATGTTTCGAC 59.407 52.381 0.00 0.00 36.65 4.20
161 162 1.478916 TCCCGCATGAGTATGTTTCGA 59.521 47.619 0.00 0.00 36.65 3.71
162 163 1.934589 TCCCGCATGAGTATGTTTCG 58.065 50.000 0.00 0.00 36.65 3.46
163 164 3.733337 AGATCCCGCATGAGTATGTTTC 58.267 45.455 0.00 0.00 36.65 2.78
164 165 3.845781 AGATCCCGCATGAGTATGTTT 57.154 42.857 0.00 0.00 36.65 2.83
165 166 4.955811 TTAGATCCCGCATGAGTATGTT 57.044 40.909 0.00 0.00 36.65 2.71
166 167 5.489792 AATTAGATCCCGCATGAGTATGT 57.510 39.130 0.00 0.00 36.65 2.29
167 168 6.808008 AAAATTAGATCCCGCATGAGTATG 57.192 37.500 0.00 0.00 37.36 2.39
168 169 8.918202 TTTAAAATTAGATCCCGCATGAGTAT 57.082 30.769 0.00 0.00 0.00 2.12
169 170 8.208224 TCTTTAAAATTAGATCCCGCATGAGTA 58.792 33.333 0.00 0.00 0.00 2.59
170 171 7.054124 TCTTTAAAATTAGATCCCGCATGAGT 58.946 34.615 0.00 0.00 0.00 3.41
171 172 7.496529 TCTTTAAAATTAGATCCCGCATGAG 57.503 36.000 0.00 0.00 0.00 2.90
172 173 7.502226 ACATCTTTAAAATTAGATCCCGCATGA 59.498 33.333 0.00 0.00 0.00 3.07
173 174 7.651808 ACATCTTTAAAATTAGATCCCGCATG 58.348 34.615 0.00 0.00 0.00 4.06
174 175 7.307989 CGACATCTTTAAAATTAGATCCCGCAT 60.308 37.037 0.00 0.00 0.00 4.73
175 176 6.018262 CGACATCTTTAAAATTAGATCCCGCA 60.018 38.462 0.00 0.00 0.00 5.69
176 177 6.363473 CGACATCTTTAAAATTAGATCCCGC 58.637 40.000 0.00 0.00 0.00 6.13
177 178 6.363473 GCGACATCTTTAAAATTAGATCCCG 58.637 40.000 0.00 0.00 0.00 5.14
178 179 6.565999 CGGCGACATCTTTAAAATTAGATCCC 60.566 42.308 0.00 0.00 0.00 3.85
179 180 6.018180 ACGGCGACATCTTTAAAATTAGATCC 60.018 38.462 16.62 0.00 0.00 3.36
180 181 6.945072 ACGGCGACATCTTTAAAATTAGATC 58.055 36.000 16.62 0.00 0.00 2.75
181 182 6.920569 ACGGCGACATCTTTAAAATTAGAT 57.079 33.333 16.62 0.00 0.00 1.98
182 183 7.830940 TTACGGCGACATCTTTAAAATTAGA 57.169 32.000 16.62 0.00 0.00 2.10
183 184 8.385111 TCTTTACGGCGACATCTTTAAAATTAG 58.615 33.333 16.62 0.00 0.00 1.73
184 185 8.254178 TCTTTACGGCGACATCTTTAAAATTA 57.746 30.769 16.62 0.00 0.00 1.40
185 186 7.136289 TCTTTACGGCGACATCTTTAAAATT 57.864 32.000 16.62 0.00 0.00 1.82
186 187 6.730960 TCTTTACGGCGACATCTTTAAAAT 57.269 33.333 16.62 0.00 0.00 1.82
187 188 6.542574 TTCTTTACGGCGACATCTTTAAAA 57.457 33.333 16.62 0.00 0.00 1.52
188 189 6.730960 ATTCTTTACGGCGACATCTTTAAA 57.269 33.333 16.62 5.13 0.00 1.52
189 190 6.369340 TGAATTCTTTACGGCGACATCTTTAA 59.631 34.615 16.62 0.00 0.00 1.52
190 191 5.870433 TGAATTCTTTACGGCGACATCTTTA 59.130 36.000 16.62 0.00 0.00 1.85
191 192 4.693566 TGAATTCTTTACGGCGACATCTTT 59.306 37.500 16.62 0.00 0.00 2.52
192 193 4.250464 TGAATTCTTTACGGCGACATCTT 58.750 39.130 16.62 0.00 0.00 2.40
193 194 3.857052 TGAATTCTTTACGGCGACATCT 58.143 40.909 16.62 0.00 0.00 2.90
194 195 4.142988 TGTTGAATTCTTTACGGCGACATC 60.143 41.667 16.62 0.65 0.00 3.06
195 196 3.749088 TGTTGAATTCTTTACGGCGACAT 59.251 39.130 16.62 0.00 0.00 3.06
196 197 3.132160 TGTTGAATTCTTTACGGCGACA 58.868 40.909 16.62 0.00 0.00 4.35
197 198 3.799137 TGTTGAATTCTTTACGGCGAC 57.201 42.857 16.62 0.00 0.00 5.19
198 199 4.452795 TCATTGTTGAATTCTTTACGGCGA 59.547 37.500 16.62 0.00 0.00 5.54
199 200 4.717991 TCATTGTTGAATTCTTTACGGCG 58.282 39.130 4.80 4.80 0.00 6.46
200 201 6.305638 GTCTTCATTGTTGAATTCTTTACGGC 59.694 38.462 7.05 0.00 40.95 5.68
201 202 6.519761 CGTCTTCATTGTTGAATTCTTTACGG 59.480 38.462 7.05 0.00 40.95 4.02
202 203 6.519761 CCGTCTTCATTGTTGAATTCTTTACG 59.480 38.462 7.05 0.00 40.95 3.18
203 204 7.581476 TCCGTCTTCATTGTTGAATTCTTTAC 58.419 34.615 7.05 3.33 40.95 2.01
204 205 7.737972 TCCGTCTTCATTGTTGAATTCTTTA 57.262 32.000 7.05 0.00 40.95 1.85
205 206 6.633500 TCCGTCTTCATTGTTGAATTCTTT 57.367 33.333 7.05 0.00 40.95 2.52
206 207 6.656693 AGATCCGTCTTCATTGTTGAATTCTT 59.343 34.615 7.05 0.00 40.95 2.52
207 208 6.093219 CAGATCCGTCTTCATTGTTGAATTCT 59.907 38.462 7.05 0.00 40.95 2.40
208 209 6.092670 TCAGATCCGTCTTCATTGTTGAATTC 59.907 38.462 0.00 0.00 40.95 2.17
209 210 5.939883 TCAGATCCGTCTTCATTGTTGAATT 59.060 36.000 0.00 0.00 40.95 2.17
210 211 5.491070 TCAGATCCGTCTTCATTGTTGAAT 58.509 37.500 0.00 0.00 40.95 2.57
211 212 4.893608 TCAGATCCGTCTTCATTGTTGAA 58.106 39.130 0.00 0.00 39.54 2.69
212 213 4.535526 TCAGATCCGTCTTCATTGTTGA 57.464 40.909 0.00 0.00 30.42 3.18
213 214 5.808042 ATTCAGATCCGTCTTCATTGTTG 57.192 39.130 0.00 0.00 30.42 3.33
214 215 5.355350 GGAATTCAGATCCGTCTTCATTGTT 59.645 40.000 7.93 0.00 30.42 2.83
215 216 4.878397 GGAATTCAGATCCGTCTTCATTGT 59.122 41.667 7.93 0.00 30.42 2.71
216 217 4.877823 TGGAATTCAGATCCGTCTTCATTG 59.122 41.667 7.93 0.00 39.98 2.82
217 218 5.102953 TGGAATTCAGATCCGTCTTCATT 57.897 39.130 7.93 0.00 39.98 2.57
218 219 4.760530 TGGAATTCAGATCCGTCTTCAT 57.239 40.909 7.93 0.00 39.98 2.57
219 220 4.253685 GTTGGAATTCAGATCCGTCTTCA 58.746 43.478 7.93 0.00 39.98 3.02
220 221 3.307242 CGTTGGAATTCAGATCCGTCTTC 59.693 47.826 7.93 0.00 39.98 2.87
221 222 3.262420 CGTTGGAATTCAGATCCGTCTT 58.738 45.455 7.93 0.00 39.98 3.01
222 223 2.893637 CGTTGGAATTCAGATCCGTCT 58.106 47.619 7.93 0.00 39.98 4.18
223 224 1.327764 GCGTTGGAATTCAGATCCGTC 59.672 52.381 7.93 0.00 39.98 4.79
224 225 1.369625 GCGTTGGAATTCAGATCCGT 58.630 50.000 7.93 0.00 39.98 4.69
225 226 0.301687 CGCGTTGGAATTCAGATCCG 59.698 55.000 7.93 3.16 39.98 4.18
226 227 0.028110 GCGCGTTGGAATTCAGATCC 59.972 55.000 8.43 0.00 37.48 3.36
227 228 0.315382 CGCGCGTTGGAATTCAGATC 60.315 55.000 24.19 0.00 0.00 2.75
228 229 1.705337 CCGCGCGTTGGAATTCAGAT 61.705 55.000 29.95 0.00 0.00 2.90
229 230 2.387445 CCGCGCGTTGGAATTCAGA 61.387 57.895 29.95 0.00 0.00 3.27
230 231 2.098298 CCGCGCGTTGGAATTCAG 59.902 61.111 29.95 4.86 0.00 3.02
231 232 1.787057 AAACCGCGCGTTGGAATTCA 61.787 50.000 29.95 0.00 33.93 2.57
232 233 1.081708 AAACCGCGCGTTGGAATTC 60.082 52.632 29.95 0.00 33.93 2.17
233 234 1.371145 CAAACCGCGCGTTGGAATT 60.371 52.632 29.95 15.10 33.93 2.17
234 235 2.182614 CTCAAACCGCGCGTTGGAAT 62.183 55.000 29.95 5.47 33.83 3.01
235 236 2.887889 CTCAAACCGCGCGTTGGAA 61.888 57.895 29.95 11.24 33.83 3.53
236 237 3.342627 CTCAAACCGCGCGTTGGA 61.343 61.111 29.95 22.31 33.93 3.53
237 238 3.295228 CTCTCAAACCGCGCGTTGG 62.295 63.158 29.95 19.45 33.93 3.77
238 239 1.626654 ATCTCTCAAACCGCGCGTTG 61.627 55.000 29.95 25.85 33.93 4.10
239 240 0.108992 TATCTCTCAAACCGCGCGTT 60.109 50.000 29.95 19.49 35.70 4.84
240 241 0.102481 ATATCTCTCAAACCGCGCGT 59.898 50.000 29.95 14.24 0.00 6.01
241 242 0.504384 CATATCTCTCAAACCGCGCG 59.496 55.000 25.67 25.67 0.00 6.86
242 243 1.852942 TCATATCTCTCAAACCGCGC 58.147 50.000 0.00 0.00 0.00 6.86
243 244 5.409643 AAAATCATATCTCTCAAACCGCG 57.590 39.130 0.00 0.00 0.00 6.46
329 330 8.232513 CGCTATCAGCATTTAATGTATTCACAT 58.767 33.333 6.81 0.00 43.86 3.21
330 331 7.440856 TCGCTATCAGCATTTAATGTATTCACA 59.559 33.333 6.81 0.00 42.58 3.58
331 332 7.796838 TCGCTATCAGCATTTAATGTATTCAC 58.203 34.615 6.81 0.00 42.58 3.18
332 333 7.961325 TCGCTATCAGCATTTAATGTATTCA 57.039 32.000 6.81 0.00 42.58 2.57
337 338 8.873830 GTGTATATCGCTATCAGCATTTAATGT 58.126 33.333 6.81 0.00 42.58 2.71
338 339 9.091784 AGTGTATATCGCTATCAGCATTTAATG 57.908 33.333 0.00 0.00 42.58 1.90
340 341 9.788960 CTAGTGTATATCGCTATCAGCATTTAA 57.211 33.333 0.00 0.00 42.58 1.52
341 342 7.915923 GCTAGTGTATATCGCTATCAGCATTTA 59.084 37.037 0.00 0.00 42.58 1.40
342 343 6.754209 GCTAGTGTATATCGCTATCAGCATTT 59.246 38.462 0.00 0.00 42.58 2.32
343 344 6.127619 TGCTAGTGTATATCGCTATCAGCATT 60.128 38.462 0.00 0.00 42.58 3.56
344 345 5.358160 TGCTAGTGTATATCGCTATCAGCAT 59.642 40.000 0.00 0.00 42.58 3.79
345 346 4.700213 TGCTAGTGTATATCGCTATCAGCA 59.300 41.667 0.00 0.00 42.58 4.41
346 347 5.065346 TCTGCTAGTGTATATCGCTATCAGC 59.935 44.000 14.83 9.65 45.33 4.26
347 348 6.670077 TCTGCTAGTGTATATCGCTATCAG 57.330 41.667 14.12 14.12 46.23 2.90
348 349 8.732746 TTATCTGCTAGTGTATATCGCTATCA 57.267 34.615 0.00 0.00 38.29 2.15
374 375 9.512588 CCTTCTTATCCATATATGAGCTGTTTT 57.487 33.333 14.54 0.00 0.00 2.43
375 376 7.609532 GCCTTCTTATCCATATATGAGCTGTTT 59.390 37.037 14.54 0.00 0.00 2.83
376 377 7.037730 AGCCTTCTTATCCATATATGAGCTGTT 60.038 37.037 14.54 0.00 29.48 3.16
377 378 6.443206 AGCCTTCTTATCCATATATGAGCTGT 59.557 38.462 14.54 0.00 29.48 4.40
378 379 6.762187 CAGCCTTCTTATCCATATATGAGCTG 59.238 42.308 14.54 12.16 36.20 4.24
379 380 6.126825 CCAGCCTTCTTATCCATATATGAGCT 60.127 42.308 14.54 0.00 30.07 4.09
380 381 6.054295 CCAGCCTTCTTATCCATATATGAGC 58.946 44.000 14.54 3.22 0.00 4.26
381 382 6.054295 GCCAGCCTTCTTATCCATATATGAG 58.946 44.000 14.54 3.71 0.00 2.90
382 383 5.104360 GGCCAGCCTTCTTATCCATATATGA 60.104 44.000 14.54 1.10 0.00 2.15
383 384 5.128919 GGCCAGCCTTCTTATCCATATATG 58.871 45.833 5.68 5.68 0.00 1.78
384 385 4.141620 CGGCCAGCCTTCTTATCCATATAT 60.142 45.833 2.24 0.00 0.00 0.86
385 386 3.197766 CGGCCAGCCTTCTTATCCATATA 59.802 47.826 2.24 0.00 0.00 0.86
386 387 2.026822 CGGCCAGCCTTCTTATCCATAT 60.027 50.000 2.24 0.00 0.00 1.78
387 388 1.347707 CGGCCAGCCTTCTTATCCATA 59.652 52.381 2.24 0.00 0.00 2.74
388 389 0.109342 CGGCCAGCCTTCTTATCCAT 59.891 55.000 2.24 0.00 0.00 3.41
389 390 1.526887 CGGCCAGCCTTCTTATCCA 59.473 57.895 2.24 0.00 0.00 3.41
390 391 1.894282 GCGGCCAGCCTTCTTATCC 60.894 63.158 2.24 0.00 40.81 2.59
391 392 3.737824 GCGGCCAGCCTTCTTATC 58.262 61.111 2.24 0.00 40.81 1.75
401 402 4.421479 ACGAGAACGAGCGGCCAG 62.421 66.667 2.24 0.00 42.66 4.85
402 403 4.415332 GACGAGAACGAGCGGCCA 62.415 66.667 2.24 0.00 42.66 5.36
403 404 3.909258 TTGACGAGAACGAGCGGCC 62.909 63.158 0.00 0.00 42.66 6.13
404 405 1.352156 AATTGACGAGAACGAGCGGC 61.352 55.000 0.00 0.00 42.66 6.53
405 406 1.846782 CTAATTGACGAGAACGAGCGG 59.153 52.381 0.00 0.00 42.66 5.52
406 407 1.253034 GCTAATTGACGAGAACGAGCG 59.747 52.381 0.00 0.00 42.66 5.03
407 408 1.253034 CGCTAATTGACGAGAACGAGC 59.747 52.381 0.00 0.00 42.66 5.03
408 409 1.253034 GCGCTAATTGACGAGAACGAG 59.747 52.381 0.00 0.00 42.66 4.18
409 410 1.265568 GCGCTAATTGACGAGAACGA 58.734 50.000 0.00 0.00 42.66 3.85
410 411 0.045002 CGCGCTAATTGACGAGAACG 60.045 55.000 5.56 0.00 45.75 3.95
411 412 0.314339 GCGCGCTAATTGACGAGAAC 60.314 55.000 26.67 0.00 0.00 3.01
412 413 1.739093 CGCGCGCTAATTGACGAGAA 61.739 55.000 30.48 0.00 0.00 2.87
413 414 2.221552 CGCGCGCTAATTGACGAGA 61.222 57.895 30.48 0.00 0.00 4.04
414 415 2.221552 TCGCGCGCTAATTGACGAG 61.222 57.895 30.48 9.37 0.00 4.18
415 416 2.202505 TCGCGCGCTAATTGACGA 60.203 55.556 30.48 13.45 0.00 4.20
416 417 2.055095 GTCGCGCGCTAATTGACG 60.055 61.111 30.48 11.00 0.00 4.35
417 418 2.320044 GGTCGCGCGCTAATTGAC 59.680 61.111 30.48 25.92 0.00 3.18
418 419 2.125872 TGGTCGCGCGCTAATTGA 60.126 55.556 30.48 15.89 0.00 2.57
419 420 1.966493 AAGTGGTCGCGCGCTAATTG 61.966 55.000 30.48 13.47 0.00 2.32
420 421 1.296056 AAAGTGGTCGCGCGCTAATT 61.296 50.000 30.48 19.92 0.00 1.40
421 422 1.296056 AAAAGTGGTCGCGCGCTAAT 61.296 50.000 30.48 14.83 0.00 1.73
422 423 1.500512 AAAAAGTGGTCGCGCGCTAA 61.501 50.000 30.48 14.71 0.00 3.09
423 424 0.666880 TAAAAAGTGGTCGCGCGCTA 60.667 50.000 30.48 17.01 0.00 4.26
424 425 1.897398 CTAAAAAGTGGTCGCGCGCT 61.897 55.000 30.48 14.05 0.00 5.92
425 426 1.509162 CTAAAAAGTGGTCGCGCGC 60.509 57.895 27.95 23.91 0.00 6.86
426 427 0.719465 ATCTAAAAAGTGGTCGCGCG 59.281 50.000 26.76 26.76 0.00 6.86
427 428 2.894307 AATCTAAAAAGTGGTCGCGC 57.106 45.000 0.00 0.00 0.00 6.86
428 429 3.911964 CCAAAATCTAAAAAGTGGTCGCG 59.088 43.478 0.00 0.00 0.00 5.87
429 430 4.234574 CCCAAAATCTAAAAAGTGGTCGC 58.765 43.478 0.00 0.00 0.00 5.19
430 431 5.447624 ACCCAAAATCTAAAAAGTGGTCG 57.552 39.130 0.00 0.00 0.00 4.79
440 441 9.723601 ACGTGTTAGTTAATACCCAAAATCTAA 57.276 29.630 0.00 0.00 0.00 2.10
442 443 9.895138 ATACGTGTTAGTTAATACCCAAAATCT 57.105 29.630 0.00 0.00 0.00 2.40
463 464 9.669353 CGGTTTACTCTTTGTATACATATACGT 57.331 33.333 6.36 0.00 41.04 3.57
464 465 9.882996 TCGGTTTACTCTTTGTATACATATACG 57.117 33.333 6.36 2.04 41.04 3.06
517 524 5.239963 TCTGTCATTGTTGCAGGCATATATG 59.760 40.000 8.45 8.45 31.78 1.78
579 591 1.452953 CCTCTGTCGGTGCGCCTATA 61.453 60.000 15.69 0.12 0.00 1.31
580 592 2.786495 CCTCTGTCGGTGCGCCTAT 61.786 63.158 15.69 0.00 0.00 2.57
598 610 0.643310 TATCGAAACGCACGCATGTC 59.357 50.000 0.00 0.00 0.00 3.06
599 611 1.072391 TTATCGAAACGCACGCATGT 58.928 45.000 0.00 0.00 0.00 3.21
717 729 4.446371 CAACTCTCTCTCTCTCTCTCTCC 58.554 52.174 0.00 0.00 0.00 3.71
718 730 4.080863 ACCAACTCTCTCTCTCTCTCTCTC 60.081 50.000 0.00 0.00 0.00 3.20
746 826 0.393077 AGTAGCAACAGTGAACGCCT 59.607 50.000 0.00 0.00 0.00 5.52
770 854 5.304686 AGTTTCAATTCACCAGGTGACTA 57.695 39.130 22.87 9.26 42.60 2.59
892 976 2.354403 GCAGGCAGAAATTCAGGCAAAT 60.354 45.455 13.80 0.00 30.85 2.32
934 1018 2.835895 GCCCCTCTCCTCGTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
935 1019 4.824515 CGCCCCTCTCCTCGTCCT 62.825 72.222 0.00 0.00 0.00 3.85
936 1020 4.816984 TCGCCCCTCTCCTCGTCC 62.817 72.222 0.00 0.00 0.00 4.79
954 1041 0.683179 TGACCTAGCTGCTAGCCGAA 60.683 55.000 27.29 12.01 43.77 4.30
1053 1143 0.395173 GGAGCTTCTCGTCCTCCTCT 60.395 60.000 0.00 0.00 41.50 3.69
1137 1227 4.444591 GGATGGACGGAGAGAGACTACTAA 60.445 50.000 0.00 0.00 0.00 2.24
1371 1477 1.742761 TGCAGCAACCTAGATTGAGC 58.257 50.000 0.00 4.36 34.57 4.26
1447 1553 1.094073 GCAGATGCTTGGCGATCTGT 61.094 55.000 20.92 0.00 41.49 3.41
1610 1716 0.178992 TTGTTGCTAGGGTTGCTGCT 60.179 50.000 0.00 0.00 0.00 4.24
1657 1763 0.606944 CGTTCCGGTTTCCATTGGGA 60.607 55.000 0.00 0.00 43.03 4.37
1692 1798 1.685224 GGGGAGCTGATGGTGAACA 59.315 57.895 0.00 0.00 0.00 3.18
1721 1827 2.102357 CGTGGCAGCGTCGTAGAT 59.898 61.111 0.00 0.00 40.67 1.98
1868 2004 1.138661 GGTCTGATCCCTGAAGCTCAG 59.861 57.143 6.28 6.28 43.91 3.35
1975 2111 2.943653 GGGTTGAAGACGTTGCCG 59.056 61.111 0.00 0.00 40.83 5.69
2038 2174 1.271379 CCCATTCCTGGTTCGACAACT 60.271 52.381 0.00 0.00 41.37 3.16
2060 2196 2.186826 GTGCCATTTCGATCCCGGG 61.187 63.158 16.85 16.85 36.24 5.73
2081 2217 0.376152 CCATGCTGTTGTCGATGCTC 59.624 55.000 0.00 0.00 0.00 4.26
2113 2249 2.169330 GGTCCAAGTCGAACTACCTCT 58.831 52.381 0.00 0.00 0.00 3.69
2121 2257 4.011517 GCGGGGGTCCAAGTCGAA 62.012 66.667 0.00 0.00 0.00 3.71
2231 2367 3.479269 CTCAAGGTCGAACGCCGC 61.479 66.667 0.00 0.00 38.37 6.53
2245 2381 1.216444 GCACGACTCCATCAGCTCA 59.784 57.895 0.00 0.00 0.00 4.26
2444 2580 3.436704 GCATTTCTTTCTGACATGGACGA 59.563 43.478 0.00 0.00 34.39 4.20
2474 2610 5.471556 TGATGGCAAATTCAACACTCAAT 57.528 34.783 0.00 0.00 0.00 2.57
2503 2639 8.224437 GCGCTAGCTAGGAAGAAATTTAAATAG 58.776 37.037 22.10 0.00 41.01 1.73
2559 2695 5.992217 AGCAGACCTTACTTAAACAACAGAG 59.008 40.000 0.00 0.00 0.00 3.35
2560 2696 5.925509 AGCAGACCTTACTTAAACAACAGA 58.074 37.500 0.00 0.00 0.00 3.41
2561 2697 6.260050 TCAAGCAGACCTTACTTAAACAACAG 59.740 38.462 0.00 0.00 31.00 3.16
2562 2698 6.116806 TCAAGCAGACCTTACTTAAACAACA 58.883 36.000 0.00 0.00 31.00 3.33
2563 2699 6.613755 TCAAGCAGACCTTACTTAAACAAC 57.386 37.500 0.00 0.00 31.00 3.32
2607 2743 4.519350 CCATCTGAATCATCACCATCTTGG 59.481 45.833 0.00 0.00 45.02 3.61
2624 2760 8.712285 AAGAAATATCATTTTTGCACCATCTG 57.288 30.769 0.00 0.00 0.00 2.90
2646 2782 8.755977 GGGAGTATTATATTATGGGACGAAAGA 58.244 37.037 0.00 0.00 0.00 2.52
2648 2784 8.674925 AGGGAGTATTATATTATGGGACGAAA 57.325 34.615 0.00 0.00 0.00 3.46
2666 2802 1.553248 CATTGTGGAACGGAGGGAGTA 59.447 52.381 0.00 0.00 42.39 2.59
2667 2803 0.324943 CATTGTGGAACGGAGGGAGT 59.675 55.000 0.00 0.00 42.39 3.85
2668 2804 0.324943 ACATTGTGGAACGGAGGGAG 59.675 55.000 0.00 0.00 42.39 4.30
2669 2805 1.553248 CTACATTGTGGAACGGAGGGA 59.447 52.381 0.00 0.00 42.39 4.20
2670 2806 2.012051 GCTACATTGTGGAACGGAGGG 61.012 57.143 4.11 0.00 42.39 4.30
2671 2807 1.369625 GCTACATTGTGGAACGGAGG 58.630 55.000 4.11 0.00 42.39 4.30
2672 2808 0.999406 CGCTACATTGTGGAACGGAG 59.001 55.000 4.11 0.00 42.39 4.63
2673 2809 1.017177 GCGCTACATTGTGGAACGGA 61.017 55.000 0.00 0.00 42.39 4.69
2674 2810 1.295357 TGCGCTACATTGTGGAACGG 61.295 55.000 9.73 0.00 42.39 4.44
2675 2811 0.726827 ATGCGCTACATTGTGGAACG 59.273 50.000 9.73 0.38 42.39 3.95
2676 2812 4.988540 TCTATATGCGCTACATTGTGGAAC 59.011 41.667 9.73 0.00 40.38 3.62
2677 2813 5.208463 TCTATATGCGCTACATTGTGGAA 57.792 39.130 9.73 0.00 40.38 3.53
2678 2814 4.864704 TCTATATGCGCTACATTGTGGA 57.135 40.909 9.73 0.00 40.38 4.02
2679 2815 6.486253 AAATCTATATGCGCTACATTGTGG 57.514 37.500 9.73 0.00 40.38 4.17
2726 2862 8.405531 TGATTTTCTCTACAAACTTGGTCAAAG 58.594 33.333 0.00 0.00 42.07 2.77
2727 2863 8.287439 TGATTTTCTCTACAAACTTGGTCAAA 57.713 30.769 0.00 0.00 0.00 2.69
2728 2864 7.873719 TGATTTTCTCTACAAACTTGGTCAA 57.126 32.000 0.00 0.00 0.00 3.18
2729 2865 9.739276 ATATGATTTTCTCTACAAACTTGGTCA 57.261 29.630 0.00 0.00 0.00 4.02
2754 2890 9.692749 CACACGTATTTGGTATTCTAGATGTAT 57.307 33.333 0.00 0.00 0.00 2.29
2755 2891 7.650504 GCACACGTATTTGGTATTCTAGATGTA 59.349 37.037 0.00 0.00 0.00 2.29
2756 2892 6.479001 GCACACGTATTTGGTATTCTAGATGT 59.521 38.462 0.00 0.00 0.00 3.06
2757 2893 6.701841 AGCACACGTATTTGGTATTCTAGATG 59.298 38.462 0.00 0.00 0.00 2.90
2758 2894 6.817184 AGCACACGTATTTGGTATTCTAGAT 58.183 36.000 0.00 0.00 0.00 1.98
2759 2895 6.216801 AGCACACGTATTTGGTATTCTAGA 57.783 37.500 0.00 0.00 0.00 2.43
2760 2896 6.903883 AAGCACACGTATTTGGTATTCTAG 57.096 37.500 0.00 0.00 0.00 2.43
2761 2897 7.774134 TCTAAGCACACGTATTTGGTATTCTA 58.226 34.615 0.00 0.00 0.00 2.10
2762 2898 6.636705 TCTAAGCACACGTATTTGGTATTCT 58.363 36.000 0.00 0.00 0.00 2.40
2763 2899 6.897259 TCTAAGCACACGTATTTGGTATTC 57.103 37.500 0.00 0.00 0.00 1.75
2764 2900 7.982919 TGTATCTAAGCACACGTATTTGGTATT 59.017 33.333 0.00 0.00 0.00 1.89
2765 2901 7.494211 TGTATCTAAGCACACGTATTTGGTAT 58.506 34.615 0.00 0.00 0.00 2.73
2766 2902 6.865411 TGTATCTAAGCACACGTATTTGGTA 58.135 36.000 0.00 0.00 0.00 3.25
2767 2903 5.726397 TGTATCTAAGCACACGTATTTGGT 58.274 37.500 0.00 0.00 0.00 3.67
2768 2904 6.478673 TGATGTATCTAAGCACACGTATTTGG 59.521 38.462 0.00 0.00 0.00 3.28
2769 2905 7.010091 TGTGATGTATCTAAGCACACGTATTTG 59.990 37.037 0.00 0.00 34.85 2.32
2770 2906 7.039270 TGTGATGTATCTAAGCACACGTATTT 58.961 34.615 0.00 0.00 34.85 1.40
2771 2907 6.569780 TGTGATGTATCTAAGCACACGTATT 58.430 36.000 0.00 0.00 34.85 1.89
2772 2908 6.144078 TGTGATGTATCTAAGCACACGTAT 57.856 37.500 0.00 0.00 34.85 3.06
2773 2909 5.570234 TGTGATGTATCTAAGCACACGTA 57.430 39.130 0.00 0.00 34.85 3.57
2774 2910 4.450082 TGTGATGTATCTAAGCACACGT 57.550 40.909 0.00 0.00 34.85 4.49
2775 2911 4.625311 TGTTGTGATGTATCTAAGCACACG 59.375 41.667 0.00 0.00 38.98 4.49
2776 2912 5.408299 TGTGTTGTGATGTATCTAAGCACAC 59.592 40.000 0.00 0.00 38.98 3.82
2777 2913 5.546526 TGTGTTGTGATGTATCTAAGCACA 58.453 37.500 10.51 10.51 37.66 4.57
2778 2914 6.668541 ATGTGTTGTGATGTATCTAAGCAC 57.331 37.500 0.00 0.00 0.00 4.40
2779 2915 7.555965 AGTATGTGTTGTGATGTATCTAAGCA 58.444 34.615 0.00 0.00 0.00 3.91
2780 2916 8.425577 AAGTATGTGTTGTGATGTATCTAAGC 57.574 34.615 0.00 0.00 0.00 3.09
2782 2918 9.936759 TGAAAGTATGTGTTGTGATGTATCTAA 57.063 29.630 0.00 0.00 0.00 2.10
2841 2977 9.628500 ACTTTGACCAAGTTTATAGAGAAAACT 57.372 29.630 0.00 0.00 43.89 2.66
2877 3013 8.335356 GCGCATATAGATTTTCTACAAAGTCAA 58.665 33.333 0.30 0.00 32.03 3.18
2878 3014 7.710907 AGCGCATATAGATTTTCTACAAAGTCA 59.289 33.333 11.47 0.00 32.03 3.41
2879 3015 8.077836 AGCGCATATAGATTTTCTACAAAGTC 57.922 34.615 11.47 0.00 30.79 3.01
2880 3016 8.979574 GTAGCGCATATAGATTTTCTACAAAGT 58.020 33.333 11.47 0.00 30.79 2.66
2881 3017 8.978539 TGTAGCGCATATAGATTTTCTACAAAG 58.021 33.333 11.47 0.00 34.20 2.77
2882 3018 8.880878 TGTAGCGCATATAGATTTTCTACAAA 57.119 30.769 11.47 0.00 34.20 2.83
2883 3019 9.489084 AATGTAGCGCATATAGATTTTCTACAA 57.511 29.630 11.47 0.00 38.67 2.41
2887 3023 9.102757 CCATAATGTAGCGCATATAGATTTTCT 57.897 33.333 11.47 0.00 36.67 2.52
2888 3024 9.098355 TCCATAATGTAGCGCATATAGATTTTC 57.902 33.333 11.47 0.00 36.67 2.29
2889 3025 9.448438 TTCCATAATGTAGCGCATATAGATTTT 57.552 29.630 11.47 0.00 36.67 1.82
2890 3026 8.883731 GTTCCATAATGTAGCGCATATAGATTT 58.116 33.333 11.47 0.00 36.67 2.17
2891 3027 7.222805 CGTTCCATAATGTAGCGCATATAGATT 59.777 37.037 11.47 6.47 36.67 2.40
2892 3028 6.697455 CGTTCCATAATGTAGCGCATATAGAT 59.303 38.462 11.47 0.00 36.67 1.98
2893 3029 6.033966 CGTTCCATAATGTAGCGCATATAGA 58.966 40.000 11.47 0.00 36.67 1.98
2894 3030 5.232202 CCGTTCCATAATGTAGCGCATATAG 59.768 44.000 11.47 0.00 36.67 1.31
2895 3031 5.105675 TCCGTTCCATAATGTAGCGCATATA 60.106 40.000 11.47 0.00 36.67 0.86
2896 3032 3.932710 CCGTTCCATAATGTAGCGCATAT 59.067 43.478 11.47 0.00 36.67 1.78
2897 3033 3.006003 TCCGTTCCATAATGTAGCGCATA 59.994 43.478 11.47 0.00 36.67 3.14
2898 3034 2.143122 CCGTTCCATAATGTAGCGCAT 58.857 47.619 11.47 0.00 40.03 4.73
2899 3035 1.137282 TCCGTTCCATAATGTAGCGCA 59.863 47.619 11.47 0.00 0.00 6.09
2900 3036 1.792949 CTCCGTTCCATAATGTAGCGC 59.207 52.381 0.00 0.00 0.00 5.92
2901 3037 2.404215 CCTCCGTTCCATAATGTAGCG 58.596 52.381 0.00 0.00 0.00 4.26
2902 3038 2.367567 TCCCTCCGTTCCATAATGTAGC 59.632 50.000 0.00 0.00 0.00 3.58
2903 3039 3.641906 ACTCCCTCCGTTCCATAATGTAG 59.358 47.826 0.00 0.00 0.00 2.74
2904 3040 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
2905 3041 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
2906 3042 3.555168 GCTACTCCCTCCGTTCCATAATG 60.555 52.174 0.00 0.00 0.00 1.90
2907 3043 2.633481 GCTACTCCCTCCGTTCCATAAT 59.367 50.000 0.00 0.00 0.00 1.28
2908 3044 2.037144 GCTACTCCCTCCGTTCCATAA 58.963 52.381 0.00 0.00 0.00 1.90
2909 3045 1.700955 GCTACTCCCTCCGTTCCATA 58.299 55.000 0.00 0.00 0.00 2.74
2910 3046 1.392710 CGCTACTCCCTCCGTTCCAT 61.393 60.000 0.00 0.00 0.00 3.41
2911 3047 2.050350 CGCTACTCCCTCCGTTCCA 61.050 63.158 0.00 0.00 0.00 3.53
2912 3048 1.602327 AACGCTACTCCCTCCGTTCC 61.602 60.000 0.00 0.00 39.40 3.62
2913 3049 0.245813 AAACGCTACTCCCTCCGTTC 59.754 55.000 0.00 0.00 42.31 3.95
2914 3050 0.683412 AAAACGCTACTCCCTCCGTT 59.317 50.000 0.00 0.00 44.66 4.44
2915 3051 0.683412 AAAAACGCTACTCCCTCCGT 59.317 50.000 0.00 0.00 35.14 4.69
2916 3052 1.076332 CAAAAACGCTACTCCCTCCG 58.924 55.000 0.00 0.00 0.00 4.63
2917 3053 2.467566 TCAAAAACGCTACTCCCTCC 57.532 50.000 0.00 0.00 0.00 4.30
2918 3054 6.985059 ACTAATATCAAAAACGCTACTCCCTC 59.015 38.462 0.00 0.00 0.00 4.30
2919 3055 6.761714 CACTAATATCAAAAACGCTACTCCCT 59.238 38.462 0.00 0.00 0.00 4.20
2920 3056 6.537660 ACACTAATATCAAAAACGCTACTCCC 59.462 38.462 0.00 0.00 0.00 4.30
2921 3057 7.535489 ACACTAATATCAAAAACGCTACTCC 57.465 36.000 0.00 0.00 0.00 3.85
2922 3058 9.298774 AGTACACTAATATCAAAAACGCTACTC 57.701 33.333 0.00 0.00 0.00 2.59
2923 3059 9.084164 CAGTACACTAATATCAAAAACGCTACT 57.916 33.333 0.00 0.00 0.00 2.57
2924 3060 8.866956 ACAGTACACTAATATCAAAAACGCTAC 58.133 33.333 0.00 0.00 0.00 3.58
2925 3061 8.991243 ACAGTACACTAATATCAAAAACGCTA 57.009 30.769 0.00 0.00 0.00 4.26
2937 3073 5.887598 TCCTCCGCTTTACAGTACACTAATA 59.112 40.000 0.00 0.00 0.00 0.98
2939 3075 4.081406 TCCTCCGCTTTACAGTACACTAA 58.919 43.478 0.00 0.00 0.00 2.24
2947 3083 6.421202 GTGAAATATACTCCTCCGCTTTACAG 59.579 42.308 0.00 0.00 0.00 2.74
2954 3090 3.060602 GCTGTGAAATATACTCCTCCGC 58.939 50.000 0.00 0.00 0.00 5.54
3121 3258 5.181690 TCTGCATAAACTGACAAACAACC 57.818 39.130 0.00 0.00 0.00 3.77
3153 3290 1.403679 TGCGGTGTTTGTTGGAGAAAG 59.596 47.619 0.00 0.00 0.00 2.62
3216 3354 2.740714 CTGTTTGCCCGCTAGACGC 61.741 63.158 0.00 0.00 41.76 5.19
3217 3355 2.740714 GCTGTTTGCCCGCTAGACG 61.741 63.158 0.00 0.00 43.15 4.18
3218 3356 1.376037 AGCTGTTTGCCCGCTAGAC 60.376 57.895 0.00 0.00 44.23 2.59
3219 3357 1.375908 CAGCTGTTTGCCCGCTAGA 60.376 57.895 5.25 0.00 44.23 2.43
3220 3358 3.044059 GCAGCTGTTTGCCCGCTAG 62.044 63.158 16.64 0.00 44.23 3.42
3221 3359 3.055719 GCAGCTGTTTGCCCGCTA 61.056 61.111 16.64 0.00 44.23 4.26
3227 3365 1.210155 CTAACGGGCAGCTGTTTGC 59.790 57.895 16.64 0.48 43.34 3.68
3228 3366 1.210155 GCTAACGGGCAGCTGTTTG 59.790 57.895 16.64 7.60 36.07 2.93
3229 3367 1.971695 GGCTAACGGGCAGCTGTTT 60.972 57.895 16.64 6.43 39.09 2.83
3230 3368 2.359975 GGCTAACGGGCAGCTGTT 60.360 61.111 16.64 3.92 39.09 3.16
3231 3369 4.410400 GGGCTAACGGGCAGCTGT 62.410 66.667 16.64 0.00 42.84 4.40
3232 3370 4.101448 AGGGCTAACGGGCAGCTG 62.101 66.667 10.11 10.11 42.84 4.24
3233 3371 4.101448 CAGGGCTAACGGGCAGCT 62.101 66.667 5.35 0.00 42.84 4.24
3235 3373 3.704231 ATGCAGGGCTAACGGGCAG 62.704 63.158 0.00 0.00 42.84 4.85
3236 3374 3.727258 ATGCAGGGCTAACGGGCA 61.727 61.111 0.00 0.00 42.84 5.36
3237 3375 3.211963 CATGCAGGGCTAACGGGC 61.212 66.667 0.00 0.00 40.05 6.13
3238 3376 2.516930 CCATGCAGGGCTAACGGG 60.517 66.667 3.55 0.00 0.00 5.28
3251 3389 1.169661 TAAAATAGCCGGCCGCCATG 61.170 55.000 26.15 7.29 38.78 3.66
3252 3390 0.466555 TTAAAATAGCCGGCCGCCAT 60.467 50.000 26.15 10.15 38.78 4.40
3253 3391 1.077644 TTAAAATAGCCGGCCGCCA 60.078 52.632 26.15 6.85 38.78 5.69
3254 3392 0.816421 TCTTAAAATAGCCGGCCGCC 60.816 55.000 26.15 9.69 38.78 6.13
3255 3393 1.018910 TTCTTAAAATAGCCGGCCGC 58.981 50.000 26.15 16.01 37.98 6.53
3256 3394 3.982576 AATTCTTAAAATAGCCGGCCG 57.017 42.857 26.15 21.04 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.