Multiple sequence alignment - TraesCS2A01G229800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G229800 chr2A 100.000 3047 0 0 1 3047 262041567 262038521 0.000000e+00 5627
1 TraesCS2A01G229800 chr2A 96.875 64 0 2 2556 2617 625708928 625708991 4.150000e-19 106
2 TraesCS2A01G229800 chrUn 91.013 1491 91 15 1087 2564 235126230 235127690 0.000000e+00 1971
3 TraesCS2A01G229800 chrUn 90.946 1491 93 14 1087 2564 183913684 183912223 0.000000e+00 1967
4 TraesCS2A01G229800 chrUn 90.946 1491 93 14 1087 2564 244647075 244645614 0.000000e+00 1967
5 TraesCS2A01G229800 chrUn 90.677 1491 96 15 1087 2564 240858124 240856664 0.000000e+00 1943
6 TraesCS2A01G229800 chrUn 90.448 1497 99 16 1087 2569 44878359 44876893 0.000000e+00 1932
7 TraesCS2A01G229800 chrUn 90.198 1214 78 14 1087 2288 412358471 412357287 0.000000e+00 1544
8 TraesCS2A01G229800 chrUn 91.684 986 72 6 63 1042 183914670 183913689 0.000000e+00 1358
9 TraesCS2A01G229800 chrUn 91.582 986 73 6 63 1042 235125244 235126225 0.000000e+00 1352
10 TraesCS2A01G229800 chrUn 91.582 986 73 6 63 1042 240859110 240858129 0.000000e+00 1352
11 TraesCS2A01G229800 chrUn 91.230 992 76 7 63 1048 44879344 44878358 0.000000e+00 1339
12 TraesCS2A01G229800 chrUn 91.176 986 77 6 63 1042 244648061 244647080 0.000000e+00 1330
13 TraesCS2A01G229800 chrUn 89.816 923 64 10 1643 2564 260036967 260036074 0.000000e+00 1157
14 TraesCS2A01G229800 chrUn 90.833 840 45 12 1087 1914 418677181 418676362 0.000000e+00 1096
15 TraesCS2A01G229800 chrUn 91.824 636 42 6 63 692 407692544 407693175 0.000000e+00 878
16 TraesCS2A01G229800 chrUn 91.552 580 38 5 1986 2564 367025791 367026360 0.000000e+00 789
17 TraesCS2A01G229800 chrUn 91.971 548 34 6 63 604 427842171 427842714 0.000000e+00 760
18 TraesCS2A01G229800 chrUn 91.304 437 38 0 606 1042 418677622 418677186 5.620000e-167 597
19 TraesCS2A01G229800 chrUn 89.844 128 13 0 915 1042 412358603 412358476 6.760000e-37 165
20 TraesCS2A01G229800 chr5A 87.443 1545 140 28 1044 2564 475861728 475863242 0.000000e+00 1729
21 TraesCS2A01G229800 chr5A 91.697 554 36 7 194 737 475861034 475861587 0.000000e+00 760
22 TraesCS2A01G229800 chr5D 90.816 1274 75 15 1087 2348 432922811 432921568 0.000000e+00 1666
23 TraesCS2A01G229800 chr5D 89.774 1017 69 15 63 1048 432923822 432922810 0.000000e+00 1269
24 TraesCS2A01G229800 chr5D 96.941 425 12 1 2624 3047 425757781 425758205 0.000000e+00 712
25 TraesCS2A01G229800 chr5D 96.714 426 12 2 2624 3047 451457287 451456862 0.000000e+00 708
26 TraesCS2A01G229800 chr3D 84.718 903 104 16 1670 2564 405681049 405680173 0.000000e+00 872
27 TraesCS2A01G229800 chr3D 96.774 62 2 0 2556 2617 133120612 133120551 1.490000e-18 104
28 TraesCS2A01G229800 chr7D 96.963 428 12 1 2621 3047 516962313 516962740 0.000000e+00 717
29 TraesCS2A01G229800 chr7D 96.774 62 2 0 2556 2617 188634308 188634369 1.490000e-18 104
30 TraesCS2A01G229800 chr4D 96.941 425 12 1 2624 3047 72216039 72215615 0.000000e+00 712
31 TraesCS2A01G229800 chr4D 96.729 428 13 1 2621 3047 498168073 498168500 0.000000e+00 712
32 TraesCS2A01G229800 chr4D 96.825 63 1 1 2556 2617 64229628 64229690 1.490000e-18 104
33 TraesCS2A01G229800 chr3A 96.934 424 13 0 2624 3047 536601838 536601415 0.000000e+00 712
34 TraesCS2A01G229800 chr3A 91.429 490 34 5 2565 3047 31774021 31774509 0.000000e+00 665
35 TraesCS2A01G229800 chr1D 96.941 425 12 1 2624 3047 389873216 389872792 0.000000e+00 712
36 TraesCS2A01G229800 chr1D 96.495 428 14 1 2621 3047 388594890 388595317 0.000000e+00 706
37 TraesCS2A01G229800 chr5B 85.455 605 74 11 82 678 149590332 149589734 4.320000e-173 617
38 TraesCS2A01G229800 chr7B 96.774 62 2 0 2556 2617 102714989 102715050 1.490000e-18 104
39 TraesCS2A01G229800 chr7A 96.774 62 2 0 2556 2617 458874844 458874783 1.490000e-18 104
40 TraesCS2A01G229800 chr6A 96.774 62 2 0 2556 2617 111583246 111583185 1.490000e-18 104
41 TraesCS2A01G229800 chr2B 96.774 62 2 0 2556 2617 114631092 114631153 1.490000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G229800 chr2A 262038521 262041567 3046 True 5627.0 5627 100.0000 1 3047 1 chr2A.!!$R1 3046
1 TraesCS2A01G229800 chrUn 183912223 183914670 2447 True 1662.5 1967 91.3150 63 2564 2 chrUn.!!$R3 2501
2 TraesCS2A01G229800 chrUn 235125244 235127690 2446 False 1661.5 1971 91.2975 63 2564 2 chrUn.!!$F4 2501
3 TraesCS2A01G229800 chrUn 244645614 244648061 2447 True 1648.5 1967 91.0610 63 2564 2 chrUn.!!$R5 2501
4 TraesCS2A01G229800 chrUn 240856664 240859110 2446 True 1647.5 1943 91.1295 63 2564 2 chrUn.!!$R4 2501
5 TraesCS2A01G229800 chrUn 44876893 44879344 2451 True 1635.5 1932 90.8390 63 2569 2 chrUn.!!$R2 2506
6 TraesCS2A01G229800 chrUn 260036074 260036967 893 True 1157.0 1157 89.8160 1643 2564 1 chrUn.!!$R1 921
7 TraesCS2A01G229800 chrUn 407692544 407693175 631 False 878.0 878 91.8240 63 692 1 chrUn.!!$F2 629
8 TraesCS2A01G229800 chrUn 412357287 412358603 1316 True 854.5 1544 90.0210 915 2288 2 chrUn.!!$R6 1373
9 TraesCS2A01G229800 chrUn 418676362 418677622 1260 True 846.5 1096 91.0685 606 1914 2 chrUn.!!$R7 1308
10 TraesCS2A01G229800 chrUn 367025791 367026360 569 False 789.0 789 91.5520 1986 2564 1 chrUn.!!$F1 578
11 TraesCS2A01G229800 chrUn 427842171 427842714 543 False 760.0 760 91.9710 63 604 1 chrUn.!!$F3 541
12 TraesCS2A01G229800 chr5A 475861034 475863242 2208 False 1244.5 1729 89.5700 194 2564 2 chr5A.!!$F1 2370
13 TraesCS2A01G229800 chr5D 432921568 432923822 2254 True 1467.5 1666 90.2950 63 2348 2 chr5D.!!$R2 2285
14 TraesCS2A01G229800 chr3D 405680173 405681049 876 True 872.0 872 84.7180 1670 2564 1 chr3D.!!$R2 894
15 TraesCS2A01G229800 chr5B 149589734 149590332 598 True 617.0 617 85.4550 82 678 1 chr5B.!!$R1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 967 0.255033 GATTACTCCGGCCAAACCCT 59.745 55.0 2.24 0.0 33.26 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 2494 0.259938 CTGCCAAGCCCTAGGGAAAT 59.74 55.0 33.21 13.52 37.5 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 5.130643 AGGAGGCCTGGTAATTTTCTACTAC 59.869 44.000 12.00 0.00 29.57 2.73
94 95 5.130643 GGAGGCCTGGTAATTTTCTACTACT 59.869 44.000 12.00 0.00 0.00 2.57
95 96 6.325804 GGAGGCCTGGTAATTTTCTACTACTA 59.674 42.308 12.00 0.00 0.00 1.82
178 179 8.721019 AAGTTTCAGCAAAATGAAGAAAATCA 57.279 26.923 0.00 0.00 40.16 2.57
209 210 8.689251 TTTACTGAAGAATATGTCGAACTGAG 57.311 34.615 0.00 0.00 0.00 3.35
221 223 2.079158 CGAACTGAGCACCATGTCATT 58.921 47.619 0.00 0.00 0.00 2.57
308 310 6.037500 TCGATTGAATTGAGGTAAGCATGAAG 59.962 38.462 0.00 0.00 0.00 3.02
331 333 4.877942 CATCAATGCTCACGAAAAATTGC 58.122 39.130 0.00 0.00 0.00 3.56
349 351 4.939509 TTGCGCCAAGAACTAGAAATAC 57.060 40.909 4.18 0.00 0.00 1.89
432 437 3.747010 GCTAGATGATCAGTCCAGCAATG 59.253 47.826 15.31 0.00 0.00 2.82
451 458 0.539438 GGGTGTCAGGCATGGTTTGA 60.539 55.000 0.00 0.00 0.00 2.69
525 534 7.905604 TCATTTGTACCATCAGACACTTAAG 57.094 36.000 0.00 0.00 0.00 1.85
584 623 5.685511 CACAAAGGAAACCATTAGTTGTTCG 59.314 40.000 0.00 0.00 39.19 3.95
737 778 3.105203 CCGCCATACGTAAAATTTGCTG 58.895 45.455 0.00 0.00 41.42 4.41
749 790 6.582295 CGTAAAATTTGCTGCAAAGTCTATGT 59.418 34.615 28.86 11.65 36.76 2.29
784 825 7.288672 GCTAAAATCTTATACACCACGCATAC 58.711 38.462 0.00 0.00 0.00 2.39
811 852 0.898326 TGAGCTAAGACGTGCCTCCA 60.898 55.000 0.00 0.00 0.00 3.86
827 868 2.124193 CATGCGGGGCCTGATTGA 60.124 61.111 18.84 0.00 0.00 2.57
829 870 1.529948 ATGCGGGGCCTGATTGATG 60.530 57.895 18.84 0.00 0.00 3.07
842 887 0.548031 ATTGATGATGGGTCGTGGCT 59.452 50.000 0.00 0.00 0.00 4.75
854 899 1.067142 GTCGTGGCTTGATGTAGTGGA 60.067 52.381 0.00 0.00 0.00 4.02
874 919 5.995897 GTGGACTTGTAGGTTGTAACTTGAT 59.004 40.000 0.00 0.00 0.00 2.57
890 935 1.237533 TGATTGCACGTCAGCACATT 58.762 45.000 0.00 0.00 45.61 2.71
922 967 0.255033 GATTACTCCGGCCAAACCCT 59.745 55.000 2.24 0.00 33.26 4.34
929 974 1.674322 CGGCCAAACCCTCGTGATT 60.674 57.895 2.24 0.00 33.26 2.57
954 999 3.247006 GGATTGCTCCTCTAAACACGA 57.753 47.619 0.00 0.00 38.65 4.35
957 1002 2.724977 TGCTCCTCTAAACACGACAG 57.275 50.000 0.00 0.00 0.00 3.51
971 1016 4.235762 ACAGTGCGTGAAGGCGGT 62.236 61.111 0.00 0.00 35.06 5.68
978 1023 4.740822 GTGAAGGCGGTGGGGCAT 62.741 66.667 0.00 0.00 45.36 4.40
1020 1065 4.643387 GGGACCGTGGCACTGCTT 62.643 66.667 16.72 0.00 0.00 3.91
1071 1116 2.414293 CGCGAGGGTCAGTATGCTATAC 60.414 54.545 0.00 0.00 34.76 1.47
1072 1117 2.414293 GCGAGGGTCAGTATGCTATACG 60.414 54.545 0.00 0.00 34.76 3.06
1073 1118 2.414293 CGAGGGTCAGTATGCTATACGC 60.414 54.545 4.97 4.97 34.76 4.42
1082 1127 3.986970 TGCTATACGCAGATGGTGG 57.013 52.632 0.00 0.00 45.47 4.61
1083 1128 0.249868 TGCTATACGCAGATGGTGGC 60.250 55.000 0.00 0.00 45.47 5.01
1084 1129 0.249868 GCTATACGCAGATGGTGGCA 60.250 55.000 0.00 0.00 38.92 4.92
1085 1130 1.810031 GCTATACGCAGATGGTGGCAA 60.810 52.381 0.00 0.00 38.92 4.52
1223 1268 9.855021 GGTTCTGCTTGTAATTTTGTTATACAT 57.145 29.630 0.00 0.00 30.29 2.29
1318 1363 4.858850 ACAAGAGGAATGTCATTGCCATA 58.141 39.130 12.95 0.00 0.00 2.74
1634 1700 3.464720 TTTGCTCCATCATAAACCCCA 57.535 42.857 0.00 0.00 0.00 4.96
1638 1704 2.424812 GCTCCATCATAAACCCCACCAT 60.425 50.000 0.00 0.00 0.00 3.55
1639 1705 3.225104 CTCCATCATAAACCCCACCATG 58.775 50.000 0.00 0.00 0.00 3.66
1641 1707 1.337703 CATCATAAACCCCACCATGCG 59.662 52.381 0.00 0.00 0.00 4.73
1656 1732 4.090057 GCGTTCTGCCTTCGCCAC 62.090 66.667 0.00 0.00 43.41 5.01
1657 1733 2.357517 CGTTCTGCCTTCGCCACT 60.358 61.111 0.00 0.00 0.00 4.00
1658 1734 2.671177 CGTTCTGCCTTCGCCACTG 61.671 63.158 0.00 0.00 0.00 3.66
1659 1735 1.301716 GTTCTGCCTTCGCCACTGA 60.302 57.895 0.00 0.00 0.00 3.41
1667 1743 2.224606 CCTTCGCCACTGAATATGCAT 58.775 47.619 3.79 3.79 0.00 3.96
1683 1759 4.691860 ATGCATGCTCTTACACAAAGAC 57.308 40.909 20.33 0.00 39.36 3.01
1741 1818 2.557924 CAACATACTTGCCAGCCTTTGA 59.442 45.455 0.00 0.00 0.00 2.69
1767 1844 7.836479 ACTAACTAGTTGGTGTATCCCTATC 57.164 40.000 22.28 0.00 32.91 2.08
1782 1859 5.708736 TCCCTATCCATTTGCAGACTTTA 57.291 39.130 0.00 0.00 0.00 1.85
1838 1917 0.250901 CCACCTCCAGTTCCACCAAG 60.251 60.000 0.00 0.00 0.00 3.61
1847 1926 2.024414 AGTTCCACCAAGTGCTTGTTC 58.976 47.619 10.56 0.00 38.85 3.18
1849 1928 0.817634 TCCACCAAGTGCTTGTTCGG 60.818 55.000 10.56 7.82 38.85 4.30
1850 1929 1.008538 CACCAAGTGCTTGTTCGGC 60.009 57.895 10.56 0.00 38.85 5.54
1851 1930 1.152963 ACCAAGTGCTTGTTCGGCT 60.153 52.632 10.56 0.00 38.85 5.52
1887 1966 1.405105 GGAAACAAGCACAGAACTGCA 59.595 47.619 1.46 0.00 39.86 4.41
1902 1981 1.202177 ACTGCAAACTTTGTGTGCTCG 60.202 47.619 13.14 7.52 46.03 5.03
1919 1998 2.030946 GCTCGGCAACATGTAGAACATC 59.969 50.000 0.00 0.00 36.53 3.06
1956 2036 2.820330 CAACTTTTGGGTGAATGCGTT 58.180 42.857 0.00 0.00 0.00 4.84
1969 2049 5.399301 GGTGAATGCGTTGATAACATATTGC 59.601 40.000 0.00 0.00 0.00 3.56
2010 2097 9.122779 GTAGTAGTAGATACTTGTCTTGACCAT 57.877 37.037 0.00 0.00 42.30 3.55
2011 2098 8.596781 AGTAGTAGATACTTGTCTTGACCATT 57.403 34.615 0.00 0.00 42.30 3.16
2022 2109 7.394359 ACTTGTCTTGACCATTAATGCTTGTAT 59.606 33.333 10.11 0.00 0.00 2.29
2093 2184 5.107824 GGTTCTAAACCGACCTTGTATCTC 58.892 45.833 0.00 0.00 42.62 2.75
2136 2227 6.149308 GGTCTGATGTATGTGTGTCATTTGAA 59.851 38.462 0.00 0.00 37.91 2.69
2362 2459 4.051237 GACAGGCAAACAAGTTCAATTCC 58.949 43.478 0.00 0.00 0.00 3.01
2369 2466 5.684813 GCAAACAAGTTCAATTCCTTCCCTT 60.685 40.000 0.00 0.00 0.00 3.95
2397 2494 2.356741 GCAGCCCTAGGTAACCAAATGA 60.357 50.000 8.29 0.00 37.17 2.57
2451 2548 5.044558 GGAAAGAGCTCTTTACCGACTATG 58.955 45.833 35.53 0.00 45.37 2.23
2512 2609 6.318144 GGTAGAGCCTTTACCTATGGTTTTTC 59.682 42.308 4.23 0.00 38.02 2.29
2531 2628 3.746045 TCGCATTTCACCTAGGGTATC 57.254 47.619 14.81 0.00 32.11 2.24
2556 2653 5.188434 GGCCCTAGGTAAAATCGTAGTTTT 58.812 41.667 8.29 0.00 35.60 2.43
2557 2654 6.070309 TGGCCCTAGGTAAAATCGTAGTTTTA 60.070 38.462 8.29 0.00 33.62 1.52
2559 2656 7.500227 GGCCCTAGGTAAAATCGTAGTTTTAAT 59.500 37.037 8.29 2.23 35.86 1.40
2560 2657 9.546428 GCCCTAGGTAAAATCGTAGTTTTAATA 57.454 33.333 8.29 2.95 35.86 0.98
2569 2666 8.712285 AAATCGTAGTTTTAATAGTGCTAGCA 57.288 30.769 14.93 14.93 0.00 3.49
2570 2667 8.888579 AATCGTAGTTTTAATAGTGCTAGCAT 57.111 30.769 22.51 12.36 0.00 3.79
2571 2668 7.694388 TCGTAGTTTTAATAGTGCTAGCATG 57.306 36.000 22.51 0.00 0.00 4.06
2572 2669 7.485810 TCGTAGTTTTAATAGTGCTAGCATGA 58.514 34.615 22.51 12.40 0.00 3.07
2573 2670 7.977293 TCGTAGTTTTAATAGTGCTAGCATGAA 59.023 33.333 22.51 9.86 0.00 2.57
2574 2671 8.765219 CGTAGTTTTAATAGTGCTAGCATGAAT 58.235 33.333 22.51 11.81 0.00 2.57
2690 2787 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
2691 2788 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
2692 2789 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
2693 2790 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
2694 2791 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
2695 2792 7.107542 TGCTAGAATTGTATTAACCGGAAACT 58.892 34.615 9.46 0.00 0.00 2.66
2696 2793 7.608761 TGCTAGAATTGTATTAACCGGAAACTT 59.391 33.333 9.46 0.00 0.00 2.66
2697 2794 7.908601 GCTAGAATTGTATTAACCGGAAACTTG 59.091 37.037 9.46 0.00 0.00 3.16
2698 2795 7.989416 AGAATTGTATTAACCGGAAACTTGA 57.011 32.000 9.46 0.00 0.00 3.02
2699 2796 8.575649 AGAATTGTATTAACCGGAAACTTGAT 57.424 30.769 9.46 0.00 0.00 2.57
2700 2797 9.675464 AGAATTGTATTAACCGGAAACTTGATA 57.325 29.630 9.46 0.00 0.00 2.15
2701 2798 9.712359 GAATTGTATTAACCGGAAACTTGATAC 57.288 33.333 9.46 9.36 0.00 2.24
2702 2799 8.795842 ATTGTATTAACCGGAAACTTGATACA 57.204 30.769 9.46 11.96 30.33 2.29
2703 2800 8.795842 TTGTATTAACCGGAAACTTGATACAT 57.204 30.769 9.46 0.00 31.55 2.29
2704 2801 8.203937 TGTATTAACCGGAAACTTGATACATG 57.796 34.615 9.46 0.00 28.53 3.21
2705 2802 7.825270 TGTATTAACCGGAAACTTGATACATGT 59.175 33.333 9.46 2.69 28.53 3.21
2706 2803 6.489127 TTAACCGGAAACTTGATACATGTG 57.511 37.500 9.46 0.00 0.00 3.21
2707 2804 4.015872 ACCGGAAACTTGATACATGTGT 57.984 40.909 9.46 0.10 0.00 3.72
2708 2805 3.751175 ACCGGAAACTTGATACATGTGTG 59.249 43.478 9.46 0.00 0.00 3.82
2709 2806 3.126858 CCGGAAACTTGATACATGTGTGG 59.873 47.826 9.11 0.00 0.00 4.17
2710 2807 4.000325 CGGAAACTTGATACATGTGTGGA 59.000 43.478 9.11 0.00 0.00 4.02
2711 2808 4.635765 CGGAAACTTGATACATGTGTGGAT 59.364 41.667 9.11 0.00 0.00 3.41
2712 2809 5.815222 CGGAAACTTGATACATGTGTGGATA 59.185 40.000 9.11 0.00 0.00 2.59
2713 2810 6.238103 CGGAAACTTGATACATGTGTGGATAC 60.238 42.308 9.11 0.00 0.00 2.24
2729 2826 5.155278 TGGATACATAGACAAAACACCGT 57.845 39.130 0.00 0.00 46.17 4.83
2730 2827 4.932799 TGGATACATAGACAAAACACCGTG 59.067 41.667 0.00 0.00 46.17 4.94
2731 2828 4.933400 GGATACATAGACAAAACACCGTGT 59.067 41.667 0.00 0.00 0.00 4.49
2732 2829 5.063060 GGATACATAGACAAAACACCGTGTC 59.937 44.000 4.23 0.00 43.70 3.67
2733 2830 3.135994 ACATAGACAAAACACCGTGTCC 58.864 45.455 4.23 0.00 44.30 4.02
2734 2831 2.243602 TAGACAAAACACCGTGTCCC 57.756 50.000 4.23 0.00 44.30 4.46
2735 2832 0.544697 AGACAAAACACCGTGTCCCT 59.455 50.000 4.23 0.00 44.30 4.20
2736 2833 1.764134 AGACAAAACACCGTGTCCCTA 59.236 47.619 4.23 0.00 44.30 3.53
2737 2834 2.140717 GACAAAACACCGTGTCCCTAG 58.859 52.381 4.23 0.00 38.57 3.02
2738 2835 1.487558 ACAAAACACCGTGTCCCTAGT 59.512 47.619 4.23 0.00 0.00 2.57
2739 2836 2.699846 ACAAAACACCGTGTCCCTAGTA 59.300 45.455 4.23 0.00 0.00 1.82
2740 2837 3.134442 ACAAAACACCGTGTCCCTAGTAA 59.866 43.478 4.23 0.00 0.00 2.24
2741 2838 4.128643 CAAAACACCGTGTCCCTAGTAAA 58.871 43.478 4.23 0.00 0.00 2.01
2742 2839 3.391506 AACACCGTGTCCCTAGTAAAC 57.608 47.619 4.23 0.00 0.00 2.01
2743 2840 1.620323 ACACCGTGTCCCTAGTAAACC 59.380 52.381 0.00 0.00 0.00 3.27
2744 2841 1.897802 CACCGTGTCCCTAGTAAACCT 59.102 52.381 0.00 0.00 0.00 3.50
2745 2842 2.094338 CACCGTGTCCCTAGTAAACCTC 60.094 54.545 0.00 0.00 0.00 3.85
2746 2843 2.225217 ACCGTGTCCCTAGTAAACCTCT 60.225 50.000 0.00 0.00 0.00 3.69
2747 2844 3.010584 ACCGTGTCCCTAGTAAACCTCTA 59.989 47.826 0.00 0.00 0.00 2.43
2748 2845 3.379688 CCGTGTCCCTAGTAAACCTCTAC 59.620 52.174 0.00 0.00 0.00 2.59
2749 2846 4.268359 CGTGTCCCTAGTAAACCTCTACT 58.732 47.826 0.00 0.00 36.16 2.57
2750 2847 5.431765 CGTGTCCCTAGTAAACCTCTACTA 58.568 45.833 0.00 0.00 34.03 1.82
2751 2848 5.526846 CGTGTCCCTAGTAAACCTCTACTAG 59.473 48.000 9.79 9.79 45.92 2.57
2761 2858 8.021898 AGTAAACCTCTACTAGACTAGATCGT 57.978 38.462 16.55 0.00 30.13 3.73
2762 2859 8.485392 AGTAAACCTCTACTAGACTAGATCGTT 58.515 37.037 16.55 7.66 30.13 3.85
2763 2860 9.757227 GTAAACCTCTACTAGACTAGATCGTTA 57.243 37.037 16.55 0.00 0.00 3.18
2765 2862 9.850198 AAACCTCTACTAGACTAGATCGTTAAT 57.150 33.333 16.55 0.00 0.00 1.40
2766 2863 9.492973 AACCTCTACTAGACTAGATCGTTAATC 57.507 37.037 16.55 0.00 34.30 1.75
2767 2864 8.649591 ACCTCTACTAGACTAGATCGTTAATCA 58.350 37.037 16.55 0.00 36.79 2.57
2768 2865 9.491675 CCTCTACTAGACTAGATCGTTAATCAA 57.508 37.037 16.55 0.00 36.79 2.57
2774 2871 9.619316 CTAGACTAGATCGTTAATCAAAGATGG 57.381 37.037 3.13 0.00 36.79 3.51
2775 2872 8.012957 AGACTAGATCGTTAATCAAAGATGGT 57.987 34.615 0.00 0.00 36.79 3.55
2776 2873 8.478877 AGACTAGATCGTTAATCAAAGATGGTT 58.521 33.333 0.00 0.00 36.79 3.67
2777 2874 9.745880 GACTAGATCGTTAATCAAAGATGGTTA 57.254 33.333 0.00 0.00 36.79 2.85
2781 2878 9.449719 AGATCGTTAATCAAAGATGGTTAAGTT 57.550 29.630 0.00 0.00 41.55 2.66
2784 2881 9.887406 TCGTTAATCAAAGATGGTTAAGTTTTC 57.113 29.630 0.00 0.00 41.55 2.29
2785 2882 9.893305 CGTTAATCAAAGATGGTTAAGTTTTCT 57.107 29.630 0.00 0.00 41.55 2.52
2798 2895 9.226606 TGGTTAAGTTTTCTAACCATAGACATG 57.773 33.333 9.79 0.00 45.67 3.21
2799 2896 9.227777 GGTTAAGTTTTCTAACCATAGACATGT 57.772 33.333 0.00 0.00 41.99 3.21
2801 2898 9.787435 TTAAGTTTTCTAACCATAGACATGTGT 57.213 29.630 1.15 0.22 37.88 3.72
2802 2899 8.691661 AAGTTTTCTAACCATAGACATGTGTT 57.308 30.769 1.15 3.14 37.88 3.32
2803 2900 8.099364 AGTTTTCTAACCATAGACATGTGTTG 57.901 34.615 1.15 0.54 37.88 3.33
2804 2901 7.719633 AGTTTTCTAACCATAGACATGTGTTGT 59.280 33.333 1.15 0.00 37.88 3.32
2818 2915 6.160684 ACATGTGTTGTCATTTGATGAATGG 58.839 36.000 0.00 0.00 44.30 3.16
2819 2916 5.136816 TGTGTTGTCATTTGATGAATGGG 57.863 39.130 0.00 0.00 44.30 4.00
2820 2917 4.831710 TGTGTTGTCATTTGATGAATGGGA 59.168 37.500 0.00 0.00 44.30 4.37
2821 2918 5.481122 TGTGTTGTCATTTGATGAATGGGAT 59.519 36.000 0.00 0.00 44.30 3.85
2822 2919 6.038356 GTGTTGTCATTTGATGAATGGGATC 58.962 40.000 0.00 0.00 44.30 3.36
2823 2920 5.715753 TGTTGTCATTTGATGAATGGGATCA 59.284 36.000 0.00 0.00 44.30 2.92
2824 2921 5.840243 TGTCATTTGATGAATGGGATCAC 57.160 39.130 0.00 0.00 44.30 3.06
2825 2922 5.262804 TGTCATTTGATGAATGGGATCACA 58.737 37.500 0.00 0.00 44.30 3.58
2826 2923 5.894964 TGTCATTTGATGAATGGGATCACAT 59.105 36.000 4.06 4.06 44.30 3.21
2827 2924 6.040054 TGTCATTTGATGAATGGGATCACATC 59.960 38.462 11.76 5.72 44.30 3.06
2828 2925 6.040054 GTCATTTGATGAATGGGATCACATCA 59.960 38.462 11.76 11.31 44.30 3.07
2829 2926 6.780522 TCATTTGATGAATGGGATCACATCAT 59.219 34.615 11.76 15.41 45.05 2.45
2830 2927 7.289084 TCATTTGATGAATGGGATCACATCATT 59.711 33.333 11.76 6.71 45.05 2.57
2831 2928 8.581578 CATTTGATGAATGGGATCACATCATTA 58.418 33.333 11.76 10.20 45.05 1.90
2832 2929 7.754851 TTGATGAATGGGATCACATCATTAG 57.245 36.000 11.76 0.00 45.05 1.73
2833 2930 6.243148 TGATGAATGGGATCACATCATTAGG 58.757 40.000 11.76 0.00 42.31 2.69
2834 2931 5.910355 TGAATGGGATCACATCATTAGGA 57.090 39.130 11.76 0.00 32.05 2.94
2835 2932 5.872963 TGAATGGGATCACATCATTAGGAG 58.127 41.667 11.76 0.00 32.05 3.69
2836 2933 5.608015 TGAATGGGATCACATCATTAGGAGA 59.392 40.000 11.76 0.00 32.05 3.71
2837 2934 6.101588 TGAATGGGATCACATCATTAGGAGAA 59.898 38.462 11.76 0.00 32.05 2.87
2838 2935 6.715350 ATGGGATCACATCATTAGGAGAAT 57.285 37.500 4.06 0.00 0.00 2.40
2839 2936 5.872963 TGGGATCACATCATTAGGAGAATG 58.127 41.667 0.00 0.00 0.00 2.67
2840 2937 5.608015 TGGGATCACATCATTAGGAGAATGA 59.392 40.000 0.00 2.66 40.50 2.57
2841 2938 6.273965 TGGGATCACATCATTAGGAGAATGAT 59.726 38.462 0.00 6.90 45.40 2.45
2849 2946 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
2850 2947 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
2851 2948 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
2852 2949 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
2853 2950 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
2854 2951 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
2855 2952 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
2856 2953 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
2857 2954 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
2858 2955 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
2859 2956 2.577563 TGATGTGATGGACAAGACCCAT 59.422 45.455 0.00 0.00 46.40 4.00
2866 2963 3.931907 TGGACAAGACCCATCCATTAG 57.068 47.619 0.00 0.00 37.60 1.73
2867 2964 2.092429 TGGACAAGACCCATCCATTAGC 60.092 50.000 0.00 0.00 37.60 3.09
2868 2965 2.173569 GGACAAGACCCATCCATTAGCT 59.826 50.000 0.00 0.00 32.35 3.32
2869 2966 3.372025 GGACAAGACCCATCCATTAGCTT 60.372 47.826 0.00 0.00 32.35 3.74
2870 2967 4.141482 GGACAAGACCCATCCATTAGCTTA 60.141 45.833 0.00 0.00 32.35 3.09
2871 2968 5.041191 ACAAGACCCATCCATTAGCTTAG 57.959 43.478 0.00 0.00 0.00 2.18
2872 2969 3.778954 AGACCCATCCATTAGCTTAGC 57.221 47.619 0.00 0.00 0.00 3.09
2873 2970 3.048600 AGACCCATCCATTAGCTTAGCA 58.951 45.455 7.07 0.00 0.00 3.49
2874 2971 3.654806 AGACCCATCCATTAGCTTAGCAT 59.345 43.478 7.07 0.00 0.00 3.79
2875 2972 3.755378 GACCCATCCATTAGCTTAGCATG 59.245 47.826 7.07 2.07 0.00 4.06
2876 2973 3.139025 ACCCATCCATTAGCTTAGCATGT 59.861 43.478 7.07 0.00 0.00 3.21
2877 2974 4.147321 CCCATCCATTAGCTTAGCATGTT 58.853 43.478 7.07 0.00 0.00 2.71
2878 2975 4.022589 CCCATCCATTAGCTTAGCATGTTG 60.023 45.833 7.07 2.97 0.00 3.33
2879 2976 4.823442 CCATCCATTAGCTTAGCATGTTGA 59.177 41.667 7.07 0.00 0.00 3.18
2880 2977 5.475909 CCATCCATTAGCTTAGCATGTTGAT 59.524 40.000 7.07 0.00 0.00 2.57
2881 2978 6.349115 CCATCCATTAGCTTAGCATGTTGATC 60.349 42.308 7.07 0.00 0.00 2.92
2882 2979 4.751600 TCCATTAGCTTAGCATGTTGATCG 59.248 41.667 7.07 0.00 0.00 3.69
2883 2980 4.512944 CCATTAGCTTAGCATGTTGATCGT 59.487 41.667 7.07 0.00 0.00 3.73
2884 2981 5.008019 CCATTAGCTTAGCATGTTGATCGTT 59.992 40.000 7.07 0.00 0.00 3.85
2885 2982 5.718649 TTAGCTTAGCATGTTGATCGTTC 57.281 39.130 7.07 0.00 0.00 3.95
2886 2983 3.599343 AGCTTAGCATGTTGATCGTTCA 58.401 40.909 7.07 0.00 0.00 3.18
2887 2984 3.620374 AGCTTAGCATGTTGATCGTTCAG 59.380 43.478 7.07 0.00 32.27 3.02
2888 2985 3.372206 GCTTAGCATGTTGATCGTTCAGT 59.628 43.478 0.00 0.00 32.27 3.41
2889 2986 4.142816 GCTTAGCATGTTGATCGTTCAGTT 60.143 41.667 0.00 0.00 32.27 3.16
2890 2987 5.617751 GCTTAGCATGTTGATCGTTCAGTTT 60.618 40.000 0.00 0.00 32.27 2.66
2891 2988 4.836125 AGCATGTTGATCGTTCAGTTTT 57.164 36.364 0.00 0.00 32.27 2.43
2892 2989 5.940192 AGCATGTTGATCGTTCAGTTTTA 57.060 34.783 0.00 0.00 32.27 1.52
2893 2990 6.500684 AGCATGTTGATCGTTCAGTTTTAT 57.499 33.333 0.00 0.00 32.27 1.40
2894 2991 6.913170 AGCATGTTGATCGTTCAGTTTTATT 58.087 32.000 0.00 0.00 32.27 1.40
2895 2992 6.803320 AGCATGTTGATCGTTCAGTTTTATTG 59.197 34.615 0.00 0.00 32.27 1.90
2896 2993 6.452872 GCATGTTGATCGTTCAGTTTTATTGC 60.453 38.462 0.00 0.00 32.27 3.56
2897 2994 6.312399 TGTTGATCGTTCAGTTTTATTGCT 57.688 33.333 0.00 0.00 32.27 3.91
2898 2995 7.428282 TGTTGATCGTTCAGTTTTATTGCTA 57.572 32.000 0.00 0.00 32.27 3.49
2899 2996 8.039603 TGTTGATCGTTCAGTTTTATTGCTAT 57.960 30.769 0.00 0.00 32.27 2.97
2900 2997 8.511321 TGTTGATCGTTCAGTTTTATTGCTATT 58.489 29.630 0.00 0.00 32.27 1.73
2901 2998 8.788813 GTTGATCGTTCAGTTTTATTGCTATTG 58.211 33.333 0.00 0.00 32.27 1.90
2902 2999 6.966632 TGATCGTTCAGTTTTATTGCTATTGC 59.033 34.615 0.00 0.00 40.20 3.56
2903 3000 6.494893 TCGTTCAGTTTTATTGCTATTGCT 57.505 33.333 0.00 0.00 40.48 3.91
2904 3001 6.908825 TCGTTCAGTTTTATTGCTATTGCTT 58.091 32.000 0.00 0.00 40.48 3.91
2905 3002 7.367285 TCGTTCAGTTTTATTGCTATTGCTTT 58.633 30.769 0.00 0.00 40.48 3.51
2906 3003 7.537306 TCGTTCAGTTTTATTGCTATTGCTTTC 59.463 33.333 0.00 0.00 40.48 2.62
2907 3004 7.538678 CGTTCAGTTTTATTGCTATTGCTTTCT 59.461 33.333 0.00 0.00 40.48 2.52
2908 3005 9.196552 GTTCAGTTTTATTGCTATTGCTTTCTT 57.803 29.630 0.00 0.00 40.48 2.52
2909 3006 8.970691 TCAGTTTTATTGCTATTGCTTTCTTC 57.029 30.769 0.00 0.00 40.48 2.87
2910 3007 8.575589 TCAGTTTTATTGCTATTGCTTTCTTCA 58.424 29.630 0.00 0.00 40.48 3.02
2911 3008 9.362539 CAGTTTTATTGCTATTGCTTTCTTCAT 57.637 29.630 0.00 0.00 40.48 2.57
2912 3009 9.362539 AGTTTTATTGCTATTGCTTTCTTCATG 57.637 29.630 0.00 0.00 40.48 3.07
2913 3010 9.143631 GTTTTATTGCTATTGCTTTCTTCATGT 57.856 29.630 0.00 0.00 40.48 3.21
2914 3011 8.915871 TTTATTGCTATTGCTTTCTTCATGTC 57.084 30.769 0.00 0.00 40.48 3.06
2915 3012 5.963176 TTGCTATTGCTTTCTTCATGTCA 57.037 34.783 0.00 0.00 40.48 3.58
2916 3013 5.963176 TGCTATTGCTTTCTTCATGTCAA 57.037 34.783 0.00 0.00 40.48 3.18
2917 3014 6.330004 TGCTATTGCTTTCTTCATGTCAAA 57.670 33.333 0.00 0.00 40.48 2.69
2918 3015 6.927416 TGCTATTGCTTTCTTCATGTCAAAT 58.073 32.000 0.00 0.00 40.48 2.32
2919 3016 8.054152 TGCTATTGCTTTCTTCATGTCAAATA 57.946 30.769 0.00 0.00 40.48 1.40
2920 3017 7.970061 TGCTATTGCTTTCTTCATGTCAAATAC 59.030 33.333 0.00 0.00 40.48 1.89
2921 3018 7.970061 GCTATTGCTTTCTTCATGTCAAATACA 59.030 33.333 0.00 0.00 38.22 2.29
2937 3034 9.476202 TGTCAAATACATATTCCTTCGACTATG 57.524 33.333 0.00 0.00 37.55 2.23
2938 3035 9.692749 GTCAAATACATATTCCTTCGACTATGA 57.307 33.333 4.95 0.00 35.95 2.15
2939 3036 9.914131 TCAAATACATATTCCTTCGACTATGAG 57.086 33.333 4.95 0.00 35.95 2.90
2940 3037 9.914131 CAAATACATATTCCTTCGACTATGAGA 57.086 33.333 4.95 0.00 35.95 3.27
2946 3043 9.029243 CATATTCCTTCGACTATGAGATTATGC 57.971 37.037 0.00 0.00 34.92 3.14
2947 3044 6.405278 TTCCTTCGACTATGAGATTATGCA 57.595 37.500 0.00 0.00 0.00 3.96
2948 3045 6.405278 TCCTTCGACTATGAGATTATGCAA 57.595 37.500 0.00 0.00 0.00 4.08
2949 3046 6.216569 TCCTTCGACTATGAGATTATGCAAC 58.783 40.000 0.00 0.00 0.00 4.17
2950 3047 6.040955 TCCTTCGACTATGAGATTATGCAACT 59.959 38.462 0.00 0.00 0.00 3.16
2951 3048 7.230712 TCCTTCGACTATGAGATTATGCAACTA 59.769 37.037 0.00 0.00 0.00 2.24
2952 3049 7.327275 CCTTCGACTATGAGATTATGCAACTAC 59.673 40.741 0.00 0.00 0.00 2.73
2953 3050 6.678878 TCGACTATGAGATTATGCAACTACC 58.321 40.000 0.00 0.00 0.00 3.18
2954 3051 5.569441 CGACTATGAGATTATGCAACTACCG 59.431 44.000 0.00 0.00 0.00 4.02
2955 3052 5.784177 ACTATGAGATTATGCAACTACCGG 58.216 41.667 0.00 0.00 0.00 5.28
2956 3053 4.955811 ATGAGATTATGCAACTACCGGA 57.044 40.909 9.46 0.00 0.00 5.14
2957 3054 4.955811 TGAGATTATGCAACTACCGGAT 57.044 40.909 9.46 0.00 0.00 4.18
2958 3055 6.605471 ATGAGATTATGCAACTACCGGATA 57.395 37.500 9.46 0.00 0.00 2.59
2959 3056 5.779922 TGAGATTATGCAACTACCGGATAC 58.220 41.667 9.46 0.00 0.00 2.24
2960 3057 5.148651 AGATTATGCAACTACCGGATACC 57.851 43.478 9.46 0.00 0.00 2.73
2985 3082 5.435686 AGGAATACCTTGTGTGCTATCAA 57.564 39.130 0.00 0.00 45.36 2.57
2986 3083 5.815581 AGGAATACCTTGTGTGCTATCAAA 58.184 37.500 0.00 0.00 45.36 2.69
2987 3084 5.648092 AGGAATACCTTGTGTGCTATCAAAC 59.352 40.000 0.00 0.00 45.36 2.93
2988 3085 5.447279 GGAATACCTTGTGTGCTATCAAACG 60.447 44.000 0.00 0.00 33.01 3.60
2989 3086 2.846193 ACCTTGTGTGCTATCAAACGT 58.154 42.857 0.00 0.00 33.01 3.99
2990 3087 2.806244 ACCTTGTGTGCTATCAAACGTC 59.194 45.455 0.00 0.00 33.01 4.34
2991 3088 2.805671 CCTTGTGTGCTATCAAACGTCA 59.194 45.455 0.00 0.00 33.01 4.35
2992 3089 3.363970 CCTTGTGTGCTATCAAACGTCAC 60.364 47.826 0.00 0.00 33.01 3.67
2993 3090 2.827652 TGTGTGCTATCAAACGTCACA 58.172 42.857 0.34 0.34 33.01 3.58
2994 3091 3.198872 TGTGTGCTATCAAACGTCACAA 58.801 40.909 5.66 0.00 39.07 3.33
2995 3092 3.001838 TGTGTGCTATCAAACGTCACAAC 59.998 43.478 5.66 2.58 39.07 3.32
3005 3102 3.277652 CGTCACAACGTAACTGGGT 57.722 52.632 0.00 0.00 43.94 4.51
3006 3103 1.574134 CGTCACAACGTAACTGGGTT 58.426 50.000 0.00 0.00 43.94 4.11
3007 3104 2.741612 CGTCACAACGTAACTGGGTTA 58.258 47.619 0.00 0.00 43.94 2.85
3008 3105 3.319755 CGTCACAACGTAACTGGGTTAT 58.680 45.455 0.00 0.00 43.94 1.89
3009 3106 3.742369 CGTCACAACGTAACTGGGTTATT 59.258 43.478 0.00 0.00 43.94 1.40
3010 3107 4.922692 CGTCACAACGTAACTGGGTTATTA 59.077 41.667 0.00 0.00 43.94 0.98
3011 3108 5.577945 CGTCACAACGTAACTGGGTTATTAT 59.422 40.000 0.00 0.00 43.94 1.28
3012 3109 6.751425 CGTCACAACGTAACTGGGTTATTATA 59.249 38.462 0.00 0.00 43.94 0.98
3013 3110 7.275341 CGTCACAACGTAACTGGGTTATTATAA 59.725 37.037 0.00 0.00 43.94 0.98
3014 3111 8.934825 GTCACAACGTAACTGGGTTATTATAAA 58.065 33.333 0.00 0.00 30.49 1.40
3015 3112 9.153721 TCACAACGTAACTGGGTTATTATAAAG 57.846 33.333 0.00 0.00 30.49 1.85
3016 3113 9.153721 CACAACGTAACTGGGTTATTATAAAGA 57.846 33.333 0.00 0.00 30.49 2.52
3017 3114 9.895138 ACAACGTAACTGGGTTATTATAAAGAT 57.105 29.630 0.00 0.00 30.49 2.40
3019 3116 8.374327 ACGTAACTGGGTTATTATAAAGATGC 57.626 34.615 0.00 0.00 30.49 3.91
3020 3117 8.208903 ACGTAACTGGGTTATTATAAAGATGCT 58.791 33.333 0.00 0.00 30.49 3.79
3021 3118 8.709646 CGTAACTGGGTTATTATAAAGATGCTC 58.290 37.037 0.00 0.00 30.49 4.26
3022 3119 9.780186 GTAACTGGGTTATTATAAAGATGCTCT 57.220 33.333 0.00 0.00 30.49 4.09
3037 3134 8.948401 AAAGATGCTCTATAGGTATCTCTGAA 57.052 34.615 16.40 0.00 35.65 3.02
3038 3135 8.579850 AAGATGCTCTATAGGTATCTCTGAAG 57.420 38.462 16.40 0.00 35.65 3.02
3039 3136 7.118723 AGATGCTCTATAGGTATCTCTGAAGG 58.881 42.308 12.70 0.00 32.24 3.46
3040 3137 6.207509 TGCTCTATAGGTATCTCTGAAGGT 57.792 41.667 0.00 0.00 0.00 3.50
3041 3138 6.007076 TGCTCTATAGGTATCTCTGAAGGTG 58.993 44.000 0.00 0.00 0.00 4.00
3042 3139 6.007703 GCTCTATAGGTATCTCTGAAGGTGT 58.992 44.000 0.00 0.00 0.00 4.16
3043 3140 6.492087 GCTCTATAGGTATCTCTGAAGGTGTT 59.508 42.308 0.00 0.00 0.00 3.32
3044 3141 7.014808 GCTCTATAGGTATCTCTGAAGGTGTTT 59.985 40.741 0.00 0.00 0.00 2.83
3045 3142 8.239038 TCTATAGGTATCTCTGAAGGTGTTTG 57.761 38.462 0.00 0.00 0.00 2.93
3046 3143 6.875972 ATAGGTATCTCTGAAGGTGTTTGT 57.124 37.500 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.917887 ACAACTACCAGTTATACTACTATCAGT 57.082 33.333 0.00 0.00 36.03 3.41
48 49 9.364653 CCTCCTAATACAACTACCAGTTATACT 57.635 37.037 0.00 0.00 36.03 2.12
49 50 8.087136 GCCTCCTAATACAACTACCAGTTATAC 58.913 40.741 0.00 0.00 36.03 1.47
50 51 7.234166 GGCCTCCTAATACAACTACCAGTTATA 59.766 40.741 0.00 0.00 36.03 0.98
51 52 6.042897 GGCCTCCTAATACAACTACCAGTTAT 59.957 42.308 0.00 0.00 36.03 1.89
52 53 5.364735 GGCCTCCTAATACAACTACCAGTTA 59.635 44.000 0.00 0.00 36.03 2.24
53 54 4.163649 GGCCTCCTAATACAACTACCAGTT 59.836 45.833 0.00 0.00 39.39 3.16
54 55 3.710165 GGCCTCCTAATACAACTACCAGT 59.290 47.826 0.00 0.00 0.00 4.00
55 56 3.967987 AGGCCTCCTAATACAACTACCAG 59.032 47.826 0.00 0.00 28.47 4.00
56 57 3.709653 CAGGCCTCCTAATACAACTACCA 59.290 47.826 0.00 0.00 29.64 3.25
57 58 3.071167 CCAGGCCTCCTAATACAACTACC 59.929 52.174 0.00 0.00 29.64 3.18
58 59 3.710165 ACCAGGCCTCCTAATACAACTAC 59.290 47.826 0.00 0.00 29.64 2.73
59 60 4.003584 ACCAGGCCTCCTAATACAACTA 57.996 45.455 0.00 0.00 29.64 2.24
60 61 2.846950 ACCAGGCCTCCTAATACAACT 58.153 47.619 0.00 0.00 29.64 3.16
61 62 4.765813 TTACCAGGCCTCCTAATACAAC 57.234 45.455 0.00 0.00 29.64 3.32
67 68 5.729718 AGTAGAAAATTACCAGGCCTCCTAA 59.270 40.000 0.00 0.97 29.64 2.69
72 73 7.790314 AGATAGTAGTAGAAAATTACCAGGCCT 59.210 37.037 0.00 0.00 0.00 5.19
93 94 5.310409 TCAAAGGGGAAATGCCTAGATAG 57.690 43.478 0.00 0.00 36.66 2.08
94 95 5.930209 ATCAAAGGGGAAATGCCTAGATA 57.070 39.130 0.00 0.00 36.66 1.98
95 96 4.821532 ATCAAAGGGGAAATGCCTAGAT 57.178 40.909 0.00 0.00 36.66 1.98
140 141 3.460103 CTGAAACTTTGCCACAATGCTT 58.540 40.909 0.00 0.00 0.00 3.91
142 143 1.528161 GCTGAAACTTTGCCACAATGC 59.472 47.619 0.00 0.00 0.00 3.56
235 237 8.420222 ACTAGAGATCGAAATCAGATTGACATT 58.580 33.333 0.00 0.00 34.07 2.71
244 246 7.144661 AGCATACAACTAGAGATCGAAATCAG 58.855 38.462 0.00 0.00 34.07 2.90
321 323 2.393764 AGTTCTTGGCGCAATTTTTCG 58.606 42.857 10.83 0.00 0.00 3.46
331 333 7.829378 ACTAAAGTATTTCTAGTTCTTGGCG 57.171 36.000 0.00 0.00 40.09 5.69
349 351 7.543172 TGGCAGTAACTACATAACGAACTAAAG 59.457 37.037 0.00 0.00 0.00 1.85
389 393 6.710499 AGCCCTTCTAGCCTATAAATCAAT 57.290 37.500 0.00 0.00 0.00 2.57
432 437 0.539438 TCAAACCATGCCTGACACCC 60.539 55.000 0.00 0.00 0.00 4.61
451 458 5.474876 TCAGATGTCTCGTCTGCATATGTAT 59.525 40.000 12.44 0.00 44.47 2.29
546 580 4.389374 TCCTTTGTGCAAACAAACCAAAA 58.611 34.783 0.04 0.00 35.91 2.44
765 806 4.841443 TCGTATGCGTGGTGTATAAGAT 57.159 40.909 2.37 0.00 39.49 2.40
768 809 6.665474 AATTTTCGTATGCGTGGTGTATAA 57.335 33.333 2.37 0.00 39.49 0.98
784 825 3.840763 GCACGTCTTAGCTCAAATTTTCG 59.159 43.478 0.00 0.00 0.00 3.46
811 852 1.529948 CATCAATCAGGCCCCGCAT 60.530 57.895 0.00 0.00 0.00 4.73
827 868 0.548031 ATCAAGCCACGACCCATCAT 59.452 50.000 0.00 0.00 0.00 2.45
829 870 0.392998 ACATCAAGCCACGACCCATC 60.393 55.000 0.00 0.00 0.00 3.51
842 887 5.071250 ACAACCTACAAGTCCACTACATCAA 59.929 40.000 0.00 0.00 0.00 2.57
854 899 5.825679 TGCAATCAAGTTACAACCTACAAGT 59.174 36.000 0.00 0.00 0.00 3.16
874 919 1.877637 ACTAATGTGCTGACGTGCAA 58.122 45.000 1.68 0.00 45.12 4.08
890 935 5.506317 GCCGGAGTAATCGCTAGTTTTACTA 60.506 44.000 5.05 0.00 36.55 1.82
922 967 3.735237 GAGCAATCCTCCTAATCACGA 57.265 47.619 0.00 0.00 34.35 4.35
951 996 2.661866 GCCTTCACGCACTGTCGT 60.662 61.111 0.58 0.58 44.35 4.34
952 997 3.767230 CGCCTTCACGCACTGTCG 61.767 66.667 0.00 0.00 0.00 4.35
954 999 4.235762 ACCGCCTTCACGCACTGT 62.236 61.111 0.00 0.00 0.00 3.55
962 1007 4.738998 CATGCCCCACCGCCTTCA 62.739 66.667 0.00 0.00 0.00 3.02
978 1023 4.100084 CCAGCATCCGTCAGGCCA 62.100 66.667 5.01 0.00 37.47 5.36
1020 1065 2.738521 GCAAACTCGCCTCGCAGA 60.739 61.111 0.00 0.00 0.00 4.26
1071 1116 0.597568 TTTCTTTGCCACCATCTGCG 59.402 50.000 0.00 0.00 0.00 5.18
1072 1117 2.680577 CTTTTCTTTGCCACCATCTGC 58.319 47.619 0.00 0.00 0.00 4.26
1073 1118 2.036217 TGCTTTTCTTTGCCACCATCTG 59.964 45.455 0.00 0.00 0.00 2.90
1074 1119 2.318908 TGCTTTTCTTTGCCACCATCT 58.681 42.857 0.00 0.00 0.00 2.90
1075 1120 2.818130 TGCTTTTCTTTGCCACCATC 57.182 45.000 0.00 0.00 0.00 3.51
1076 1121 2.435437 ACTTGCTTTTCTTTGCCACCAT 59.565 40.909 0.00 0.00 0.00 3.55
1077 1122 1.830477 ACTTGCTTTTCTTTGCCACCA 59.170 42.857 0.00 0.00 0.00 4.17
1079 1124 1.594397 GCACTTGCTTTTCTTTGCCAC 59.406 47.619 0.00 0.00 38.21 5.01
1080 1125 1.802136 CGCACTTGCTTTTCTTTGCCA 60.802 47.619 0.00 0.00 39.32 4.92
1081 1126 0.854705 CGCACTTGCTTTTCTTTGCC 59.145 50.000 0.00 0.00 39.32 4.52
1082 1127 1.559831 ACGCACTTGCTTTTCTTTGC 58.440 45.000 0.00 0.00 39.32 3.68
1083 1128 3.952535 AGTACGCACTTGCTTTTCTTTG 58.047 40.909 0.00 0.00 39.32 2.77
1084 1129 5.941948 ATAGTACGCACTTGCTTTTCTTT 57.058 34.783 0.00 0.00 39.32 2.52
1085 1130 7.333423 TCATTATAGTACGCACTTGCTTTTCTT 59.667 33.333 0.00 0.00 39.32 2.52
1223 1268 6.015856 TGCTTGGCAAAACTGCTACTTAAATA 60.016 34.615 0.00 0.00 34.76 1.40
1230 1275 2.507339 TTGCTTGGCAAAACTGCTAC 57.493 45.000 0.00 0.00 45.96 3.58
1297 1342 6.264744 AGAATATGGCAATGACATTCCTCTTG 59.735 38.462 6.99 0.57 31.56 3.02
1501 1564 0.713883 CGCACTCAACATACGTCACC 59.286 55.000 0.00 0.00 0.00 4.02
1573 1636 5.759506 TGCAAGAGCTCACTATAGTAGAC 57.240 43.478 17.77 0.00 42.74 2.59
1622 1688 1.064017 ACGCATGGTGGGGTTTATGAT 60.064 47.619 0.00 0.00 34.28 2.45
1634 1700 2.034879 CGAAGGCAGAACGCATGGT 61.035 57.895 0.00 0.00 45.17 3.55
1655 1731 5.430886 TGTGTAAGAGCATGCATATTCAGT 58.569 37.500 21.98 3.52 0.00 3.41
1656 1732 5.996669 TGTGTAAGAGCATGCATATTCAG 57.003 39.130 21.98 0.00 0.00 3.02
1657 1733 6.598850 TCTTTGTGTAAGAGCATGCATATTCA 59.401 34.615 21.98 10.39 37.96 2.57
1658 1734 6.909357 GTCTTTGTGTAAGAGCATGCATATTC 59.091 38.462 21.98 8.62 43.39 1.75
1659 1735 6.457392 CGTCTTTGTGTAAGAGCATGCATATT 60.457 38.462 21.98 13.38 43.39 1.28
1667 1743 4.883083 AGAATCGTCTTTGTGTAAGAGCA 58.117 39.130 0.00 0.00 43.39 4.26
1683 1759 4.375272 ACATAGCATCACCTCAAGAATCG 58.625 43.478 0.00 0.00 0.00 3.34
1741 1818 6.947376 AGGGATACACCAACTAGTTAGTTT 57.053 37.500 8.04 2.80 41.12 2.66
1767 1844 2.490903 AGCTGCTAAAGTCTGCAAATGG 59.509 45.455 0.00 0.00 38.81 3.16
1782 1859 2.370189 AGACACTCCTTGTTTAGCTGCT 59.630 45.455 7.57 7.57 39.17 4.24
1838 1917 1.510480 AAGAGCAGCCGAACAAGCAC 61.510 55.000 0.00 0.00 0.00 4.40
1847 1926 2.096496 CCAAAATCTACAAGAGCAGCCG 59.904 50.000 0.00 0.00 0.00 5.52
1849 1928 5.157067 GTTTCCAAAATCTACAAGAGCAGC 58.843 41.667 0.00 0.00 0.00 5.25
1850 1929 6.317789 TGTTTCCAAAATCTACAAGAGCAG 57.682 37.500 0.00 0.00 0.00 4.24
1851 1930 6.707440 TTGTTTCCAAAATCTACAAGAGCA 57.293 33.333 0.00 0.00 0.00 4.26
1887 1966 0.814457 TTGCCGAGCACACAAAGTTT 59.186 45.000 0.00 0.00 38.71 2.66
1902 1981 4.697352 AGACTTGATGTTCTACATGTTGCC 59.303 41.667 2.30 0.00 39.27 4.52
1919 1998 5.567138 AAGTTGGTCTTCAAACAGACTTG 57.433 39.130 1.10 0.00 42.63 3.16
1983 2070 8.327271 TGGTCAAGACAAGTATCTACTACTACT 58.673 37.037 2.29 0.00 39.87 2.57
2001 2088 6.404623 GCACATACAAGCATTAATGGTCAAGA 60.405 38.462 19.80 7.18 37.57 3.02
2010 2097 7.339212 ACCTAAATCAGCACATACAAGCATTAA 59.661 33.333 0.00 0.00 0.00 1.40
2011 2098 6.828273 ACCTAAATCAGCACATACAAGCATTA 59.172 34.615 0.00 0.00 0.00 1.90
2022 2109 5.102953 AGCAGAATACCTAAATCAGCACA 57.897 39.130 0.00 0.00 0.00 4.57
2088 2179 4.994852 CCAAGGTCAGTTTGAAACGAGATA 59.005 41.667 1.97 0.00 36.23 1.98
2093 2184 2.021457 ACCCAAGGTCAGTTTGAAACG 58.979 47.619 1.97 0.00 36.23 3.60
2136 2227 7.926674 TTCAATGTACACATCAGATTCATGT 57.073 32.000 0.00 0.00 35.10 3.21
2254 2351 8.629158 CCTTTTGAATCATTTCCACCGATATAA 58.371 33.333 0.00 0.00 0.00 0.98
2260 2357 3.848726 CCCTTTTGAATCATTTCCACCG 58.151 45.455 0.00 0.00 0.00 4.94
2263 2360 3.515104 GGAGCCCTTTTGAATCATTTCCA 59.485 43.478 0.00 0.00 0.00 3.53
2348 2445 4.344968 CCAAGGGAAGGAATTGAACTTGTT 59.655 41.667 0.00 0.00 33.81 2.83
2362 2459 2.362120 CTGCAGGCCCAAGGGAAG 60.362 66.667 9.92 0.00 37.50 3.46
2397 2494 0.259938 CTGCCAAGCCCTAGGGAAAT 59.740 55.000 33.21 13.52 37.50 2.17
2451 2548 4.919793 AGGGAAAGAACCTTAGGTAAAGC 58.080 43.478 3.55 0.00 33.12 3.51
2491 2588 4.438336 GCGAAAAACCATAGGTAAAGGCTC 60.438 45.833 0.00 0.00 33.12 4.70
2512 2609 3.393800 CAGATACCCTAGGTGAAATGCG 58.606 50.000 8.29 0.00 36.19 4.73
2531 2628 3.387050 ACTACGATTTTACCTAGGGCCAG 59.613 47.826 14.81 0.54 0.00 4.85
2664 2761 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
2665 2762 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
2666 2763 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
2667 2764 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
2668 2765 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
2669 2766 7.773690 AGTTTCCGGTTAATACAATTCTAGCAT 59.226 33.333 0.00 0.00 0.00 3.79
2670 2767 7.107542 AGTTTCCGGTTAATACAATTCTAGCA 58.892 34.615 0.00 0.00 0.00 3.49
2671 2768 7.549615 AGTTTCCGGTTAATACAATTCTAGC 57.450 36.000 0.00 0.00 0.00 3.42
2672 2769 9.158233 TCAAGTTTCCGGTTAATACAATTCTAG 57.842 33.333 0.00 0.00 0.00 2.43
2673 2770 9.675464 ATCAAGTTTCCGGTTAATACAATTCTA 57.325 29.630 0.00 0.00 0.00 2.10
2674 2771 7.989416 TCAAGTTTCCGGTTAATACAATTCT 57.011 32.000 0.00 0.00 0.00 2.40
2675 2772 9.712359 GTATCAAGTTTCCGGTTAATACAATTC 57.288 33.333 0.00 0.00 0.00 2.17
2676 2773 9.233649 TGTATCAAGTTTCCGGTTAATACAATT 57.766 29.630 0.00 0.00 0.00 2.32
2677 2774 8.795842 TGTATCAAGTTTCCGGTTAATACAAT 57.204 30.769 0.00 0.00 0.00 2.71
2678 2775 8.670135 CATGTATCAAGTTTCCGGTTAATACAA 58.330 33.333 0.00 0.00 33.52 2.41
2679 2776 7.825270 ACATGTATCAAGTTTCCGGTTAATACA 59.175 33.333 0.00 0.88 34.10 2.29
2680 2777 8.120465 CACATGTATCAAGTTTCCGGTTAATAC 58.880 37.037 0.00 0.00 0.00 1.89
2681 2778 7.825270 ACACATGTATCAAGTTTCCGGTTAATA 59.175 33.333 0.00 0.00 0.00 0.98
2682 2779 6.657541 ACACATGTATCAAGTTTCCGGTTAAT 59.342 34.615 0.00 0.00 0.00 1.40
2683 2780 5.998981 ACACATGTATCAAGTTTCCGGTTAA 59.001 36.000 0.00 0.00 0.00 2.01
2684 2781 5.410132 CACACATGTATCAAGTTTCCGGTTA 59.590 40.000 0.00 0.00 0.00 2.85
2685 2782 4.215399 CACACATGTATCAAGTTTCCGGTT 59.785 41.667 0.00 0.00 0.00 4.44
2686 2783 3.751175 CACACATGTATCAAGTTTCCGGT 59.249 43.478 0.00 0.00 0.00 5.28
2687 2784 3.126858 CCACACATGTATCAAGTTTCCGG 59.873 47.826 0.00 0.00 0.00 5.14
2688 2785 4.000325 TCCACACATGTATCAAGTTTCCG 59.000 43.478 0.00 0.00 0.00 4.30
2689 2786 6.597672 TGTATCCACACATGTATCAAGTTTCC 59.402 38.462 0.00 0.00 0.00 3.13
2690 2787 7.609760 TGTATCCACACATGTATCAAGTTTC 57.390 36.000 0.00 0.00 0.00 2.78
2691 2788 9.330063 CTATGTATCCACACATGTATCAAGTTT 57.670 33.333 0.00 0.00 39.46 2.66
2692 2789 8.704668 TCTATGTATCCACACATGTATCAAGTT 58.295 33.333 0.00 0.00 39.46 2.66
2693 2790 8.144478 GTCTATGTATCCACACATGTATCAAGT 58.856 37.037 0.00 0.00 39.46 3.16
2694 2791 8.143835 TGTCTATGTATCCACACATGTATCAAG 58.856 37.037 0.00 0.00 39.46 3.02
2695 2792 8.017418 TGTCTATGTATCCACACATGTATCAA 57.983 34.615 0.00 0.00 39.46 2.57
2696 2793 7.595819 TGTCTATGTATCCACACATGTATCA 57.404 36.000 0.00 0.00 39.46 2.15
2697 2794 8.887036 TTTGTCTATGTATCCACACATGTATC 57.113 34.615 0.00 0.00 39.46 2.24
2698 2795 9.109393 GTTTTGTCTATGTATCCACACATGTAT 57.891 33.333 0.00 0.00 39.46 2.29
2699 2796 8.097662 TGTTTTGTCTATGTATCCACACATGTA 58.902 33.333 0.00 0.00 39.46 2.29
2700 2797 6.939730 TGTTTTGTCTATGTATCCACACATGT 59.060 34.615 0.00 0.00 39.46 3.21
2701 2798 7.243487 GTGTTTTGTCTATGTATCCACACATG 58.757 38.462 0.00 0.00 39.46 3.21
2702 2799 6.374333 GGTGTTTTGTCTATGTATCCACACAT 59.626 38.462 0.00 0.00 41.88 3.21
2703 2800 5.703592 GGTGTTTTGTCTATGTATCCACACA 59.296 40.000 0.00 0.00 37.54 3.72
2704 2801 5.163893 CGGTGTTTTGTCTATGTATCCACAC 60.164 44.000 0.00 0.00 37.54 3.82
2705 2802 4.932799 CGGTGTTTTGTCTATGTATCCACA 59.067 41.667 0.00 0.00 39.52 4.17
2706 2803 4.933400 ACGGTGTTTTGTCTATGTATCCAC 59.067 41.667 0.00 0.00 0.00 4.02
2707 2804 4.932799 CACGGTGTTTTGTCTATGTATCCA 59.067 41.667 0.00 0.00 0.00 3.41
2708 2805 4.933400 ACACGGTGTTTTGTCTATGTATCC 59.067 41.667 8.21 0.00 0.00 2.59
2709 2806 5.063060 GGACACGGTGTTTTGTCTATGTATC 59.937 44.000 15.94 0.00 41.65 2.24
2710 2807 4.933400 GGACACGGTGTTTTGTCTATGTAT 59.067 41.667 15.94 0.00 41.65 2.29
2711 2808 4.309099 GGACACGGTGTTTTGTCTATGTA 58.691 43.478 15.94 0.00 41.65 2.29
2712 2809 3.135994 GGACACGGTGTTTTGTCTATGT 58.864 45.455 15.94 0.00 41.65 2.29
2713 2810 2.482721 GGGACACGGTGTTTTGTCTATG 59.517 50.000 15.94 0.00 41.65 2.23
2714 2811 2.370849 AGGGACACGGTGTTTTGTCTAT 59.629 45.455 15.94 0.00 41.65 1.98
2715 2812 1.764134 AGGGACACGGTGTTTTGTCTA 59.236 47.619 15.94 0.00 41.65 2.59
2716 2813 0.544697 AGGGACACGGTGTTTTGTCT 59.455 50.000 15.94 6.16 41.65 3.41
2717 2814 2.140717 CTAGGGACACGGTGTTTTGTC 58.859 52.381 15.94 1.68 41.28 3.18
2718 2815 1.487558 ACTAGGGACACGGTGTTTTGT 59.512 47.619 15.94 8.56 0.00 2.83
2719 2816 2.249844 ACTAGGGACACGGTGTTTTG 57.750 50.000 15.94 7.98 0.00 2.44
2720 2817 4.129380 GTTTACTAGGGACACGGTGTTTT 58.871 43.478 15.94 6.77 0.00 2.43
2721 2818 3.494924 GGTTTACTAGGGACACGGTGTTT 60.495 47.826 15.94 7.12 0.00 2.83
2722 2819 2.037641 GGTTTACTAGGGACACGGTGTT 59.962 50.000 15.94 1.99 0.00 3.32
2723 2820 1.620323 GGTTTACTAGGGACACGGTGT 59.380 52.381 14.66 14.66 0.00 4.16
2724 2821 1.897802 AGGTTTACTAGGGACACGGTG 59.102 52.381 6.58 6.58 0.00 4.94
2725 2822 2.174360 GAGGTTTACTAGGGACACGGT 58.826 52.381 0.00 0.00 0.00 4.83
2726 2823 2.454538 AGAGGTTTACTAGGGACACGG 58.545 52.381 0.00 0.00 0.00 4.94
2727 2824 4.268359 AGTAGAGGTTTACTAGGGACACG 58.732 47.826 0.00 0.00 32.25 4.49
2728 2825 6.542005 GTCTAGTAGAGGTTTACTAGGGACAC 59.458 46.154 16.12 7.01 46.84 3.67
2729 2826 6.446434 AGTCTAGTAGAGGTTTACTAGGGACA 59.554 42.308 16.12 0.05 46.84 4.02
2730 2827 6.899089 AGTCTAGTAGAGGTTTACTAGGGAC 58.101 44.000 16.12 10.46 46.84 4.46
2731 2828 8.070604 TCTAGTCTAGTAGAGGTTTACTAGGGA 58.929 40.741 16.12 9.41 46.84 4.20
2732 2829 8.261349 TCTAGTCTAGTAGAGGTTTACTAGGG 57.739 42.308 16.12 7.92 46.84 3.53
2733 2830 9.933723 GATCTAGTCTAGTAGAGGTTTACTAGG 57.066 40.741 16.12 4.89 46.84 3.02
2735 2832 9.142014 ACGATCTAGTCTAGTAGAGGTTTACTA 57.858 37.037 0.00 0.00 35.57 1.82
2736 2833 8.021898 ACGATCTAGTCTAGTAGAGGTTTACT 57.978 38.462 0.00 0.00 37.61 2.24
2737 2834 8.661352 AACGATCTAGTCTAGTAGAGGTTTAC 57.339 38.462 0.00 0.00 32.49 2.01
2739 2836 9.850198 ATTAACGATCTAGTCTAGTAGAGGTTT 57.150 33.333 0.00 5.34 34.25 3.27
2740 2837 9.492973 GATTAACGATCTAGTCTAGTAGAGGTT 57.507 37.037 0.00 13.88 35.47 3.50
2741 2838 8.649591 TGATTAACGATCTAGTCTAGTAGAGGT 58.350 37.037 0.00 0.00 35.69 3.85
2742 2839 9.491675 TTGATTAACGATCTAGTCTAGTAGAGG 57.508 37.037 0.00 0.00 35.69 3.69
2748 2845 9.619316 CCATCTTTGATTAACGATCTAGTCTAG 57.381 37.037 0.00 0.00 35.69 2.43
2749 2846 9.132923 ACCATCTTTGATTAACGATCTAGTCTA 57.867 33.333 0.00 0.00 35.69 2.59
2750 2847 8.012957 ACCATCTTTGATTAACGATCTAGTCT 57.987 34.615 0.00 0.00 35.69 3.24
2751 2848 8.649973 AACCATCTTTGATTAACGATCTAGTC 57.350 34.615 0.00 0.00 35.69 2.59
2755 2852 9.449719 AACTTAACCATCTTTGATTAACGATCT 57.550 29.630 0.00 0.00 35.69 2.75
2758 2855 9.887406 GAAAACTTAACCATCTTTGATTAACGA 57.113 29.630 0.00 0.00 0.00 3.85
2759 2856 9.893305 AGAAAACTTAACCATCTTTGATTAACG 57.107 29.630 0.00 0.00 0.00 3.18
2773 2870 9.227777 ACATGTCTATGGTTAGAAAACTTAACC 57.772 33.333 7.13 7.13 46.63 2.85
2775 2872 9.787435 ACACATGTCTATGGTTAGAAAACTTAA 57.213 29.630 0.00 0.00 38.66 1.85
2776 2873 9.787435 AACACATGTCTATGGTTAGAAAACTTA 57.213 29.630 0.00 0.00 38.66 2.24
2777 2874 8.567948 CAACACATGTCTATGGTTAGAAAACTT 58.432 33.333 0.00 0.00 38.66 2.66
2778 2875 7.719633 ACAACACATGTCTATGGTTAGAAAACT 59.280 33.333 0.00 0.00 37.96 2.66
2779 2876 7.871853 ACAACACATGTCTATGGTTAGAAAAC 58.128 34.615 0.00 0.00 37.96 2.43
2794 2891 6.160684 CCATTCATCAAATGACAACACATGT 58.839 36.000 0.00 0.00 46.54 3.21
2795 2892 5.579119 CCCATTCATCAAATGACAACACATG 59.421 40.000 0.00 0.00 46.54 3.21
2796 2893 5.481122 TCCCATTCATCAAATGACAACACAT 59.519 36.000 0.00 0.00 46.54 3.21
2797 2894 4.831710 TCCCATTCATCAAATGACAACACA 59.168 37.500 0.00 0.00 46.54 3.72
2798 2895 5.389859 TCCCATTCATCAAATGACAACAC 57.610 39.130 0.00 0.00 46.54 3.32
2799 2896 5.715753 TGATCCCATTCATCAAATGACAACA 59.284 36.000 0.00 0.00 46.54 3.33
2800 2897 6.038356 GTGATCCCATTCATCAAATGACAAC 58.962 40.000 0.00 0.00 46.54 3.32
2801 2898 5.715753 TGTGATCCCATTCATCAAATGACAA 59.284 36.000 0.00 0.00 46.54 3.18
2802 2899 5.262804 TGTGATCCCATTCATCAAATGACA 58.737 37.500 0.00 0.00 46.54 3.58
2803 2900 5.840243 TGTGATCCCATTCATCAAATGAC 57.160 39.130 0.00 0.00 46.54 3.06
2804 2901 6.130569 TGATGTGATCCCATTCATCAAATGA 58.869 36.000 0.00 0.00 46.54 2.57
2805 2902 6.399639 TGATGTGATCCCATTCATCAAATG 57.600 37.500 0.00 0.00 42.01 2.32
2806 2903 7.612065 AATGATGTGATCCCATTCATCAAAT 57.388 32.000 10.02 0.00 45.83 2.32
2807 2904 7.231925 CCTAATGATGTGATCCCATTCATCAAA 59.768 37.037 10.02 2.84 45.83 2.69
2808 2905 6.717997 CCTAATGATGTGATCCCATTCATCAA 59.282 38.462 10.02 0.00 45.83 2.57
2809 2906 6.044637 TCCTAATGATGTGATCCCATTCATCA 59.955 38.462 8.70 8.70 46.43 3.07
2810 2907 6.479006 TCCTAATGATGTGATCCCATTCATC 58.521 40.000 0.00 0.00 37.68 2.92
2811 2908 6.273965 TCTCCTAATGATGTGATCCCATTCAT 59.726 38.462 0.00 0.00 33.21 2.57
2812 2909 5.608015 TCTCCTAATGATGTGATCCCATTCA 59.392 40.000 0.00 0.00 33.21 2.57
2813 2910 6.119240 TCTCCTAATGATGTGATCCCATTC 57.881 41.667 0.00 0.00 33.21 2.67
2814 2911 6.520021 TTCTCCTAATGATGTGATCCCATT 57.480 37.500 0.00 0.00 35.09 3.16
2815 2912 6.273965 TCATTCTCCTAATGATGTGATCCCAT 59.726 38.462 0.00 0.00 32.21 4.00
2816 2913 5.608015 TCATTCTCCTAATGATGTGATCCCA 59.392 40.000 0.00 0.00 32.21 4.37
2817 2914 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
2825 2922 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
2826 2923 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
2827 2924 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
2828 2925 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
2829 2926 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
2830 2927 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
2831 2928 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
2832 2929 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
2833 2930 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
2834 2931 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
2835 2932 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
2836 2933 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
2837 2934 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
2838 2935 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
2839 2936 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
2846 2943 2.092429 GCTAATGGATGGGTCTTGTCCA 60.092 50.000 0.00 0.00 45.37 4.02
2847 2944 2.173569 AGCTAATGGATGGGTCTTGTCC 59.826 50.000 0.00 0.00 0.00 4.02
2848 2945 3.567478 AGCTAATGGATGGGTCTTGTC 57.433 47.619 0.00 0.00 0.00 3.18
2849 2946 4.687219 GCTAAGCTAATGGATGGGTCTTGT 60.687 45.833 0.00 0.00 0.00 3.16
2850 2947 3.817647 GCTAAGCTAATGGATGGGTCTTG 59.182 47.826 0.00 0.00 0.00 3.02
2851 2948 3.459598 TGCTAAGCTAATGGATGGGTCTT 59.540 43.478 0.00 0.00 0.00 3.01
2852 2949 3.048600 TGCTAAGCTAATGGATGGGTCT 58.951 45.455 0.00 0.00 0.00 3.85
2853 2950 3.492102 TGCTAAGCTAATGGATGGGTC 57.508 47.619 0.00 0.00 0.00 4.46
2854 2951 3.139025 ACATGCTAAGCTAATGGATGGGT 59.861 43.478 15.45 0.00 34.55 4.51
2855 2952 3.759581 ACATGCTAAGCTAATGGATGGG 58.240 45.455 15.45 0.00 34.55 4.00
2856 2953 4.823442 TCAACATGCTAAGCTAATGGATGG 59.177 41.667 15.45 3.81 34.55 3.51
2857 2954 6.570672 ATCAACATGCTAAGCTAATGGATG 57.429 37.500 11.45 11.45 35.99 3.51
2858 2955 5.410746 CGATCAACATGCTAAGCTAATGGAT 59.589 40.000 0.00 0.00 0.00 3.41
2859 2956 4.751600 CGATCAACATGCTAAGCTAATGGA 59.248 41.667 0.00 0.00 0.00 3.41
2860 2957 4.512944 ACGATCAACATGCTAAGCTAATGG 59.487 41.667 0.00 0.00 0.00 3.16
2861 2958 5.663795 ACGATCAACATGCTAAGCTAATG 57.336 39.130 0.00 0.00 0.00 1.90
2862 2959 5.817296 TGAACGATCAACATGCTAAGCTAAT 59.183 36.000 0.00 0.00 30.99 1.73
2863 2960 5.175127 TGAACGATCAACATGCTAAGCTAA 58.825 37.500 0.00 0.00 30.99 3.09
2864 2961 4.754322 TGAACGATCAACATGCTAAGCTA 58.246 39.130 0.00 0.00 30.99 3.32
2865 2962 3.599343 TGAACGATCAACATGCTAAGCT 58.401 40.909 0.00 0.00 30.99 3.74
2866 2963 3.372206 ACTGAACGATCAACATGCTAAGC 59.628 43.478 0.00 0.00 34.49 3.09
2867 2964 5.536554 AACTGAACGATCAACATGCTAAG 57.463 39.130 0.00 0.00 34.49 2.18
2868 2965 5.940192 AAACTGAACGATCAACATGCTAA 57.060 34.783 0.00 0.00 34.49 3.09
2869 2966 5.940192 AAAACTGAACGATCAACATGCTA 57.060 34.783 0.00 0.00 34.49 3.49
2870 2967 4.836125 AAAACTGAACGATCAACATGCT 57.164 36.364 0.00 0.00 34.49 3.79
2871 2968 6.452872 GCAATAAAACTGAACGATCAACATGC 60.453 38.462 0.00 0.00 34.49 4.06
2872 2969 6.803320 AGCAATAAAACTGAACGATCAACATG 59.197 34.615 0.00 0.00 34.49 3.21
2873 2970 6.913170 AGCAATAAAACTGAACGATCAACAT 58.087 32.000 0.00 0.00 34.49 2.71
2874 2971 6.312399 AGCAATAAAACTGAACGATCAACA 57.688 33.333 0.00 0.00 34.49 3.33
2875 2972 8.788813 CAATAGCAATAAAACTGAACGATCAAC 58.211 33.333 0.00 0.00 34.49 3.18
2876 2973 7.484641 GCAATAGCAATAAAACTGAACGATCAA 59.515 33.333 0.00 0.00 41.58 2.57
2877 2974 6.966632 GCAATAGCAATAAAACTGAACGATCA 59.033 34.615 0.00 0.00 41.58 2.92
2878 2975 7.189512 AGCAATAGCAATAAAACTGAACGATC 58.810 34.615 0.00 0.00 45.49 3.69
2879 2976 7.088589 AGCAATAGCAATAAAACTGAACGAT 57.911 32.000 0.00 0.00 45.49 3.73
2880 2977 6.494893 AGCAATAGCAATAAAACTGAACGA 57.505 33.333 0.00 0.00 45.49 3.85
2881 2978 7.538678 AGAAAGCAATAGCAATAAAACTGAACG 59.461 33.333 0.00 0.00 45.49 3.95
2882 2979 8.748380 AGAAAGCAATAGCAATAAAACTGAAC 57.252 30.769 0.00 0.00 45.49 3.18
2883 2980 9.410556 GAAGAAAGCAATAGCAATAAAACTGAA 57.589 29.630 0.00 0.00 45.49 3.02
2884 2981 8.575589 TGAAGAAAGCAATAGCAATAAAACTGA 58.424 29.630 0.00 0.00 45.49 3.41
2885 2982 8.746922 TGAAGAAAGCAATAGCAATAAAACTG 57.253 30.769 0.00 0.00 45.49 3.16
2886 2983 9.362539 CATGAAGAAAGCAATAGCAATAAAACT 57.637 29.630 0.00 0.00 45.49 2.66
2887 2984 9.143631 ACATGAAGAAAGCAATAGCAATAAAAC 57.856 29.630 0.00 0.00 45.49 2.43
2888 2985 9.357652 GACATGAAGAAAGCAATAGCAATAAAA 57.642 29.630 0.00 0.00 45.49 1.52
2889 2986 8.522003 TGACATGAAGAAAGCAATAGCAATAAA 58.478 29.630 0.00 0.00 45.49 1.40
2890 2987 8.054152 TGACATGAAGAAAGCAATAGCAATAA 57.946 30.769 0.00 0.00 45.49 1.40
2891 2988 7.628769 TGACATGAAGAAAGCAATAGCAATA 57.371 32.000 0.00 0.00 45.49 1.90
2892 2989 6.519679 TGACATGAAGAAAGCAATAGCAAT 57.480 33.333 0.00 0.00 45.49 3.56
2893 2990 5.963176 TGACATGAAGAAAGCAATAGCAA 57.037 34.783 0.00 0.00 45.49 3.91
2894 2991 5.963176 TTGACATGAAGAAAGCAATAGCA 57.037 34.783 0.00 0.00 45.49 3.49
2895 2992 7.970061 TGTATTTGACATGAAGAAAGCAATAGC 59.030 33.333 0.00 0.00 35.11 2.97
2911 3008 9.476202 CATAGTCGAAGGAATATGTATTTGACA 57.524 33.333 13.10 0.00 43.03 3.58
2912 3009 9.692749 TCATAGTCGAAGGAATATGTATTTGAC 57.307 33.333 10.24 6.41 46.24 3.18
2913 3010 9.914131 CTCATAGTCGAAGGAATATGTATTTGA 57.086 33.333 10.24 0.00 46.24 2.69
2914 3011 9.914131 TCTCATAGTCGAAGGAATATGTATTTG 57.086 33.333 10.24 1.05 46.24 2.32
2921 3018 8.753133 TGCATAATCTCATAGTCGAAGGAATAT 58.247 33.333 0.00 0.00 33.97 1.28
2922 3019 8.122472 TGCATAATCTCATAGTCGAAGGAATA 57.878 34.615 0.00 0.00 0.00 1.75
2923 3020 6.997655 TGCATAATCTCATAGTCGAAGGAAT 58.002 36.000 0.00 0.00 0.00 3.01
2924 3021 6.405278 TGCATAATCTCATAGTCGAAGGAA 57.595 37.500 0.00 0.00 0.00 3.36
2925 3022 6.040955 AGTTGCATAATCTCATAGTCGAAGGA 59.959 38.462 0.00 0.00 0.00 3.36
2926 3023 6.219473 AGTTGCATAATCTCATAGTCGAAGG 58.781 40.000 0.00 0.00 0.00 3.46
2927 3024 7.327275 GGTAGTTGCATAATCTCATAGTCGAAG 59.673 40.741 0.00 0.00 0.00 3.79
2928 3025 7.145985 GGTAGTTGCATAATCTCATAGTCGAA 58.854 38.462 0.00 0.00 0.00 3.71
2929 3026 6.567891 CGGTAGTTGCATAATCTCATAGTCGA 60.568 42.308 0.00 0.00 0.00 4.20
2930 3027 5.569441 CGGTAGTTGCATAATCTCATAGTCG 59.431 44.000 0.00 0.00 0.00 4.18
2931 3028 5.864474 CCGGTAGTTGCATAATCTCATAGTC 59.136 44.000 0.00 0.00 0.00 2.59
2932 3029 5.538813 TCCGGTAGTTGCATAATCTCATAGT 59.461 40.000 0.00 0.00 0.00 2.12
2933 3030 6.025749 TCCGGTAGTTGCATAATCTCATAG 57.974 41.667 0.00 0.00 0.00 2.23
2934 3031 6.605471 ATCCGGTAGTTGCATAATCTCATA 57.395 37.500 0.00 0.00 0.00 2.15
2935 3032 4.955811 TCCGGTAGTTGCATAATCTCAT 57.044 40.909 0.00 0.00 0.00 2.90
2936 3033 4.955811 ATCCGGTAGTTGCATAATCTCA 57.044 40.909 0.00 0.00 0.00 3.27
2937 3034 5.169295 GGTATCCGGTAGTTGCATAATCTC 58.831 45.833 0.00 0.00 0.00 2.75
2938 3035 4.321750 CGGTATCCGGTAGTTGCATAATCT 60.322 45.833 0.00 0.00 44.15 2.40
2939 3036 3.924686 CGGTATCCGGTAGTTGCATAATC 59.075 47.826 0.00 0.00 44.15 1.75
2940 3037 3.921677 CGGTATCCGGTAGTTGCATAAT 58.078 45.455 0.00 0.00 44.15 1.28
2941 3038 3.374220 CGGTATCCGGTAGTTGCATAA 57.626 47.619 0.00 0.00 44.15 1.90
2943 3040 3.980583 CGGTATCCGGTAGTTGCAT 57.019 52.632 0.00 0.00 44.15 3.96
2953 3050 1.920610 AGGTATTCCTCCGGTATCCG 58.079 55.000 0.00 0.85 40.58 4.18
2954 3051 2.970640 ACAAGGTATTCCTCCGGTATCC 59.029 50.000 0.00 0.00 44.35 2.59
2955 3052 3.387050 ACACAAGGTATTCCTCCGGTATC 59.613 47.826 0.00 0.00 44.35 2.24
2956 3053 3.134081 CACACAAGGTATTCCTCCGGTAT 59.866 47.826 0.00 0.00 44.35 2.73
2957 3054 2.498481 CACACAAGGTATTCCTCCGGTA 59.502 50.000 0.00 0.00 44.35 4.02
2958 3055 1.278127 CACACAAGGTATTCCTCCGGT 59.722 52.381 0.00 0.00 44.35 5.28
2959 3056 2.012051 GCACACAAGGTATTCCTCCGG 61.012 57.143 0.00 0.00 44.35 5.14
2960 3057 1.066143 AGCACACAAGGTATTCCTCCG 60.066 52.381 0.00 0.00 44.35 4.63
2961 3058 2.789409 AGCACACAAGGTATTCCTCC 57.211 50.000 0.00 0.00 44.35 4.30
2962 3059 5.023533 TGATAGCACACAAGGTATTCCTC 57.976 43.478 0.00 0.00 44.35 3.71
2964 3061 5.447279 CGTTTGATAGCACACAAGGTATTCC 60.447 44.000 0.00 0.00 32.74 3.01
2965 3062 5.121768 ACGTTTGATAGCACACAAGGTATTC 59.878 40.000 0.00 0.00 32.74 1.75
2966 3063 5.001232 ACGTTTGATAGCACACAAGGTATT 58.999 37.500 0.00 0.00 32.74 1.89
2967 3064 4.575885 ACGTTTGATAGCACACAAGGTAT 58.424 39.130 0.00 0.00 35.09 2.73
2968 3065 3.991773 GACGTTTGATAGCACACAAGGTA 59.008 43.478 0.00 0.00 0.00 3.08
2969 3066 2.806244 GACGTTTGATAGCACACAAGGT 59.194 45.455 0.00 0.00 0.00 3.50
2970 3067 2.805671 TGACGTTTGATAGCACACAAGG 59.194 45.455 0.00 0.00 0.00 3.61
2971 3068 3.247411 TGTGACGTTTGATAGCACACAAG 59.753 43.478 0.00 0.00 34.85 3.16
2972 3069 3.198872 TGTGACGTTTGATAGCACACAA 58.801 40.909 0.00 0.00 34.85 3.33
2973 3070 2.827652 TGTGACGTTTGATAGCACACA 58.172 42.857 0.00 0.00 34.85 3.72
2974 3071 3.541711 GTTGTGACGTTTGATAGCACAC 58.458 45.455 3.73 0.00 38.98 3.82
2975 3072 2.219903 CGTTGTGACGTTTGATAGCACA 59.780 45.455 0.34 0.34 44.08 4.57
2976 3073 2.822827 CGTTGTGACGTTTGATAGCAC 58.177 47.619 0.00 0.00 44.08 4.40
2988 3085 6.973229 ATAATAACCCAGTTACGTTGTGAC 57.027 37.500 0.00 0.00 30.49 3.67
2989 3086 9.153721 CTTTATAATAACCCAGTTACGTTGTGA 57.846 33.333 0.00 0.00 30.49 3.58
2990 3087 9.153721 TCTTTATAATAACCCAGTTACGTTGTG 57.846 33.333 0.00 0.00 30.49 3.33
2991 3088 9.895138 ATCTTTATAATAACCCAGTTACGTTGT 57.105 29.630 0.00 0.00 30.49 3.32
2993 3090 8.833493 GCATCTTTATAATAACCCAGTTACGTT 58.167 33.333 0.00 0.00 30.49 3.99
2994 3091 8.208903 AGCATCTTTATAATAACCCAGTTACGT 58.791 33.333 0.00 0.00 30.49 3.57
2995 3092 8.603242 AGCATCTTTATAATAACCCAGTTACG 57.397 34.615 0.00 0.00 30.49 3.18
3015 3112 6.889722 ACCTTCAGAGATACCTATAGAGCATC 59.110 42.308 0.00 1.13 0.00 3.91
3016 3113 6.663093 CACCTTCAGAGATACCTATAGAGCAT 59.337 42.308 0.00 0.00 0.00 3.79
3017 3114 6.007076 CACCTTCAGAGATACCTATAGAGCA 58.993 44.000 0.00 0.00 0.00 4.26
3018 3115 6.007703 ACACCTTCAGAGATACCTATAGAGC 58.992 44.000 0.00 0.00 0.00 4.09
3019 3116 8.356657 CAAACACCTTCAGAGATACCTATAGAG 58.643 40.741 0.00 0.00 0.00 2.43
3020 3117 7.839705 ACAAACACCTTCAGAGATACCTATAGA 59.160 37.037 0.00 0.00 0.00 1.98
3021 3118 8.012957 ACAAACACCTTCAGAGATACCTATAG 57.987 38.462 0.00 0.00 0.00 1.31
3022 3119 7.973048 ACAAACACCTTCAGAGATACCTATA 57.027 36.000 0.00 0.00 0.00 1.31
3023 3120 6.875972 ACAAACACCTTCAGAGATACCTAT 57.124 37.500 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.