Multiple sequence alignment - TraesCS2A01G229100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G229100 chr2A 100.000 3899 0 0 1 3899 257779408 257783306 0.000000e+00 7201.0
1 TraesCS2A01G229100 chr2A 77.578 223 44 6 3328 3545 715383334 715383555 3.160000e-26 130.0
2 TraesCS2A01G229100 chr2A 91.304 46 3 1 3652 3697 677351947 677351991 1.170000e-05 62.1
3 TraesCS2A01G229100 chr2D 94.185 963 44 9 774 1732 207277314 207276360 0.000000e+00 1458.0
4 TraesCS2A01G229100 chr2D 95.095 734 26 5 2256 2981 207275556 207274825 0.000000e+00 1147.0
5 TraesCS2A01G229100 chr2D 93.471 582 31 6 3319 3895 207274294 207273715 0.000000e+00 857.0
6 TraesCS2A01G229100 chr2D 94.258 418 19 1 352 769 207278525 207278113 5.500000e-178 634.0
7 TraesCS2A01G229100 chr2D 97.898 333 7 0 1919 2251 207275940 207275608 9.390000e-161 577.0
8 TraesCS2A01G229100 chr2D 90.566 265 17 2 3034 3290 207274688 207274424 1.040000e-90 344.0
9 TraesCS2A01G229100 chr2D 96.512 172 6 0 1729 1900 207276100 207275929 6.380000e-73 285.0
10 TraesCS2A01G229100 chr2B 94.513 729 36 3 2253 2981 260606475 260607199 0.000000e+00 1122.0
11 TraesCS2A01G229100 chr2B 92.683 697 22 9 731 1417 260605405 260606082 0.000000e+00 977.0
12 TraesCS2A01G229100 chr2B 91.282 585 44 6 3320 3899 260607794 260608376 0.000000e+00 791.0
13 TraesCS2A01G229100 chr2B 96.697 333 7 2 1919 2251 260606098 260606426 5.690000e-153 551.0
14 TraesCS2A01G229100 chr2B 93.506 154 8 2 3136 3287 260607508 260607661 1.090000e-55 228.0
15 TraesCS2A01G229100 chr5A 87.518 713 66 15 2260 2958 700596820 700597523 0.000000e+00 802.0
16 TraesCS2A01G229100 chr5A 82.456 513 56 20 1021 1505 700595794 700596300 6.030000e-113 418.0
17 TraesCS2A01G229100 chr5A 86.957 345 31 7 1919 2251 700596411 700596753 3.680000e-100 375.0
18 TraesCS2A01G229100 chrUn 87.624 606 60 6 2253 2844 110649049 110649653 0.000000e+00 689.0
19 TraesCS2A01G229100 chrUn 88.818 313 25 6 1938 2249 110648694 110648997 3.680000e-100 375.0
20 TraesCS2A01G229100 chrUn 82.527 372 32 16 1021 1375 110648059 110648414 2.950000e-76 296.0
21 TraesCS2A01G229100 chr7B 93.478 368 17 3 1 361 336370802 336371169 1.230000e-149 540.0
22 TraesCS2A01G229100 chr4B 88.248 451 43 3 2257 2699 660653543 660653991 7.420000e-147 531.0
23 TraesCS2A01G229100 chr4B 86.269 335 31 7 1928 2249 660653155 660653487 2.230000e-92 350.0
24 TraesCS2A01G229100 chr4B 85.659 258 20 8 1021 1262 660652551 660652807 5.000000e-64 255.0
25 TraesCS2A01G229100 chr3D 92.623 366 21 2 1 361 596677423 596677787 4.460000e-144 521.0
26 TraesCS2A01G229100 chr3D 84.091 132 19 1 3332 3461 595208336 595208205 4.090000e-25 126.0
27 TraesCS2A01G229100 chr3A 97.143 35 1 0 3663 3697 32198926 32198960 4.210000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G229100 chr2A 257779408 257783306 3898 False 7201.000000 7201 100.000000 1 3899 1 chr2A.!!$F1 3898
1 TraesCS2A01G229100 chr2D 207273715 207278525 4810 True 757.428571 1458 94.569286 352 3895 7 chr2D.!!$R1 3543
2 TraesCS2A01G229100 chr2B 260605405 260608376 2971 False 733.800000 1122 93.736200 731 3899 5 chr2B.!!$F1 3168
3 TraesCS2A01G229100 chr5A 700595794 700597523 1729 False 531.666667 802 85.643667 1021 2958 3 chr5A.!!$F1 1937
4 TraesCS2A01G229100 chrUn 110648059 110649653 1594 False 453.333333 689 86.323000 1021 2844 3 chrUn.!!$F1 1823
5 TraesCS2A01G229100 chr4B 660652551 660653991 1440 False 378.666667 531 86.725333 1021 2699 3 chr4B.!!$F1 1678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 527 0.034767 CATGGCATCTGTCTGGGTGT 60.035 55.0 0.0 0.0 0.0 4.16 F
1181 1990 0.196118 TCCCCTTCTTCCCAGTCCTT 59.804 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2474 3685 0.957362 GGCATGCTTTAGATCCAGCC 59.043 55.0 18.92 0.0 34.91 4.85 R
3112 4524 0.731417 TAACAGAGCCGAGTACGAGC 59.269 55.0 0.00 0.0 42.66 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.578005 CTTGCCATCACTTTCAGATTGAT 57.422 39.130 0.00 0.00 0.00 2.57
23 24 6.688637 CTTGCCATCACTTTCAGATTGATA 57.311 37.500 0.00 0.00 0.00 2.15
24 25 6.441093 TTGCCATCACTTTCAGATTGATAC 57.559 37.500 0.00 0.00 0.00 2.24
25 26 5.499313 TGCCATCACTTTCAGATTGATACA 58.501 37.500 0.00 0.00 0.00 2.29
26 27 6.124340 TGCCATCACTTTCAGATTGATACAT 58.876 36.000 0.00 0.00 0.00 2.29
27 28 6.038936 TGCCATCACTTTCAGATTGATACATG 59.961 38.462 0.00 0.00 0.00 3.21
28 29 6.261603 GCCATCACTTTCAGATTGATACATGA 59.738 38.462 0.00 0.00 0.00 3.07
29 30 7.201758 GCCATCACTTTCAGATTGATACATGAA 60.202 37.037 0.00 0.00 0.00 2.57
30 31 8.680001 CCATCACTTTCAGATTGATACATGAAA 58.320 33.333 0.00 0.00 38.85 2.69
33 34 9.452287 TCACTTTCAGATTGATACATGAAATCA 57.548 29.630 0.00 5.54 39.98 2.57
38 39 9.859427 TTCAGATTGATACATGAAATCAAAACC 57.141 29.630 22.79 17.02 44.25 3.27
39 40 9.246670 TCAGATTGATACATGAAATCAAAACCT 57.753 29.630 22.79 18.24 44.25 3.50
45 46 9.389755 TGATACATGAAATCAAAACCTAATCGA 57.610 29.630 0.00 0.00 30.52 3.59
49 50 8.190784 ACATGAAATCAAAACCTAATCGAATCC 58.809 33.333 0.00 0.00 0.00 3.01
50 51 7.695480 TGAAATCAAAACCTAATCGAATCCA 57.305 32.000 0.00 0.00 0.00 3.41
51 52 8.292444 TGAAATCAAAACCTAATCGAATCCAT 57.708 30.769 0.00 0.00 0.00 3.41
52 53 9.402320 TGAAATCAAAACCTAATCGAATCCATA 57.598 29.630 0.00 0.00 0.00 2.74
53 54 9.884465 GAAATCAAAACCTAATCGAATCCATAG 57.116 33.333 0.00 0.00 0.00 2.23
54 55 9.627123 AAATCAAAACCTAATCGAATCCATAGA 57.373 29.630 0.00 0.00 0.00 1.98
55 56 9.799106 AATCAAAACCTAATCGAATCCATAGAT 57.201 29.630 0.00 0.00 0.00 1.98
56 57 8.833231 TCAAAACCTAATCGAATCCATAGATC 57.167 34.615 0.00 0.00 0.00 2.75
57 58 8.428852 TCAAAACCTAATCGAATCCATAGATCA 58.571 33.333 0.00 0.00 0.00 2.92
58 59 9.224267 CAAAACCTAATCGAATCCATAGATCAT 57.776 33.333 0.00 0.00 0.00 2.45
59 60 9.442047 AAAACCTAATCGAATCCATAGATCATC 57.558 33.333 0.00 0.00 0.00 2.92
60 61 7.969690 ACCTAATCGAATCCATAGATCATCT 57.030 36.000 0.00 0.00 0.00 2.90
61 62 7.780064 ACCTAATCGAATCCATAGATCATCTG 58.220 38.462 0.00 0.00 0.00 2.90
62 63 6.700960 CCTAATCGAATCCATAGATCATCTGC 59.299 42.308 0.00 0.00 0.00 4.26
63 64 4.462508 TCGAATCCATAGATCATCTGCC 57.537 45.455 0.00 0.00 0.00 4.85
64 65 4.092279 TCGAATCCATAGATCATCTGCCT 58.908 43.478 0.00 0.00 0.00 4.75
65 66 4.529769 TCGAATCCATAGATCATCTGCCTT 59.470 41.667 0.00 0.00 0.00 4.35
66 67 5.716703 TCGAATCCATAGATCATCTGCCTTA 59.283 40.000 0.00 0.00 0.00 2.69
67 68 6.041511 CGAATCCATAGATCATCTGCCTTAG 58.958 44.000 0.00 0.00 0.00 2.18
68 69 4.815533 TCCATAGATCATCTGCCTTAGC 57.184 45.455 0.00 0.00 40.48 3.09
69 70 4.423913 TCCATAGATCATCTGCCTTAGCT 58.576 43.478 0.00 0.00 40.80 3.32
70 71 4.842948 TCCATAGATCATCTGCCTTAGCTT 59.157 41.667 0.00 0.00 40.80 3.74
71 72 5.309020 TCCATAGATCATCTGCCTTAGCTTT 59.691 40.000 0.00 0.00 40.80 3.51
72 73 6.498303 TCCATAGATCATCTGCCTTAGCTTTA 59.502 38.462 0.00 0.00 40.80 1.85
73 74 7.181665 TCCATAGATCATCTGCCTTAGCTTTAT 59.818 37.037 0.00 0.00 40.80 1.40
74 75 7.828223 CCATAGATCATCTGCCTTAGCTTTATT 59.172 37.037 0.00 0.00 40.80 1.40
75 76 8.881743 CATAGATCATCTGCCTTAGCTTTATTC 58.118 37.037 0.00 0.00 40.80 1.75
76 77 6.835174 AGATCATCTGCCTTAGCTTTATTCA 58.165 36.000 0.00 0.00 40.80 2.57
77 78 7.285566 AGATCATCTGCCTTAGCTTTATTCAA 58.714 34.615 0.00 0.00 40.80 2.69
78 79 6.932356 TCATCTGCCTTAGCTTTATTCAAG 57.068 37.500 0.00 0.00 40.80 3.02
79 80 6.418101 TCATCTGCCTTAGCTTTATTCAAGT 58.582 36.000 0.00 0.00 40.80 3.16
80 81 6.317140 TCATCTGCCTTAGCTTTATTCAAGTG 59.683 38.462 0.00 0.00 40.80 3.16
81 82 5.560724 TCTGCCTTAGCTTTATTCAAGTGT 58.439 37.500 0.00 0.00 40.80 3.55
82 83 5.412594 TCTGCCTTAGCTTTATTCAAGTGTG 59.587 40.000 0.00 0.00 40.80 3.82
83 84 5.312895 TGCCTTAGCTTTATTCAAGTGTGA 58.687 37.500 0.00 0.00 40.80 3.58
84 85 5.181245 TGCCTTAGCTTTATTCAAGTGTGAC 59.819 40.000 0.00 0.00 40.80 3.67
85 86 5.412904 GCCTTAGCTTTATTCAAGTGTGACT 59.587 40.000 0.00 0.00 34.56 3.41
86 87 6.402658 GCCTTAGCTTTATTCAAGTGTGACTC 60.403 42.308 0.00 0.00 34.56 3.36
87 88 6.650807 CCTTAGCTTTATTCAAGTGTGACTCA 59.349 38.462 0.00 0.00 34.56 3.41
88 89 7.148507 CCTTAGCTTTATTCAAGTGTGACTCAG 60.149 40.741 0.00 0.00 34.56 3.35
89 90 5.858381 AGCTTTATTCAAGTGTGACTCAGA 58.142 37.500 0.00 0.00 34.56 3.27
90 91 5.698545 AGCTTTATTCAAGTGTGACTCAGAC 59.301 40.000 0.00 0.00 34.56 3.51
91 92 5.466728 GCTTTATTCAAGTGTGACTCAGACA 59.533 40.000 8.90 0.00 34.56 3.41
92 93 6.347240 GCTTTATTCAAGTGTGACTCAGACAG 60.347 42.308 8.90 1.58 34.56 3.51
93 94 4.944619 ATTCAAGTGTGACTCAGACAGA 57.055 40.909 8.90 3.76 31.90 3.41
94 95 4.736126 TTCAAGTGTGACTCAGACAGAA 57.264 40.909 8.90 8.96 31.90 3.02
95 96 4.736126 TCAAGTGTGACTCAGACAGAAA 57.264 40.909 8.90 0.00 29.61 2.52
96 97 5.084818 TCAAGTGTGACTCAGACAGAAAA 57.915 39.130 8.90 0.00 29.61 2.29
97 98 5.487433 TCAAGTGTGACTCAGACAGAAAAA 58.513 37.500 8.90 0.00 29.61 1.94
98 99 6.115446 TCAAGTGTGACTCAGACAGAAAAAT 58.885 36.000 8.90 0.00 29.61 1.82
99 100 6.258727 TCAAGTGTGACTCAGACAGAAAAATC 59.741 38.462 8.90 0.00 29.61 2.17
100 101 5.674525 AGTGTGACTCAGACAGAAAAATCA 58.325 37.500 8.90 0.00 29.61 2.57
101 102 5.525378 AGTGTGACTCAGACAGAAAAATCAC 59.475 40.000 8.90 0.00 36.58 3.06
102 103 5.294306 GTGTGACTCAGACAGAAAAATCACA 59.706 40.000 1.45 0.00 42.03 3.58
103 104 5.294306 TGTGACTCAGACAGAAAAATCACAC 59.706 40.000 0.00 0.00 40.05 3.82
104 105 5.525378 GTGACTCAGACAGAAAAATCACACT 59.475 40.000 0.00 0.00 36.18 3.55
105 106 6.037610 GTGACTCAGACAGAAAAATCACACTT 59.962 38.462 0.00 0.00 36.18 3.16
106 107 6.037500 TGACTCAGACAGAAAAATCACACTTG 59.962 38.462 0.00 0.00 0.00 3.16
107 108 5.173774 TCAGACAGAAAAATCACACTTGC 57.826 39.130 0.00 0.00 0.00 4.01
108 109 4.883585 TCAGACAGAAAAATCACACTTGCT 59.116 37.500 0.00 0.00 0.00 3.91
109 110 5.008019 TCAGACAGAAAAATCACACTTGCTC 59.992 40.000 0.00 0.00 0.00 4.26
110 111 5.008415 CAGACAGAAAAATCACACTTGCTCT 59.992 40.000 0.00 0.00 0.00 4.09
111 112 5.238214 AGACAGAAAAATCACACTTGCTCTC 59.762 40.000 0.00 0.00 0.00 3.20
112 113 5.128919 ACAGAAAAATCACACTTGCTCTCT 58.871 37.500 0.00 0.00 0.00 3.10
113 114 5.238214 ACAGAAAAATCACACTTGCTCTCTC 59.762 40.000 0.00 0.00 0.00 3.20
114 115 5.469421 CAGAAAAATCACACTTGCTCTCTCT 59.531 40.000 0.00 0.00 0.00 3.10
115 116 5.700373 AGAAAAATCACACTTGCTCTCTCTC 59.300 40.000 0.00 0.00 0.00 3.20
116 117 2.937469 ATCACACTTGCTCTCTCTCG 57.063 50.000 0.00 0.00 0.00 4.04
117 118 0.242286 TCACACTTGCTCTCTCTCGC 59.758 55.000 0.00 0.00 0.00 5.03
118 119 0.243365 CACACTTGCTCTCTCTCGCT 59.757 55.000 0.00 0.00 0.00 4.93
119 120 0.525761 ACACTTGCTCTCTCTCGCTC 59.474 55.000 0.00 0.00 0.00 5.03
120 121 0.179140 CACTTGCTCTCTCTCGCTCC 60.179 60.000 0.00 0.00 0.00 4.70
121 122 0.323360 ACTTGCTCTCTCTCGCTCCT 60.323 55.000 0.00 0.00 0.00 3.69
122 123 0.101040 CTTGCTCTCTCTCGCTCCTG 59.899 60.000 0.00 0.00 0.00 3.86
123 124 1.943116 TTGCTCTCTCTCGCTCCTGC 61.943 60.000 0.00 0.00 0.00 4.85
124 125 2.413963 GCTCTCTCTCGCTCCTGCA 61.414 63.158 0.00 0.00 39.64 4.41
125 126 1.737355 GCTCTCTCTCGCTCCTGCAT 61.737 60.000 0.00 0.00 39.64 3.96
126 127 0.311790 CTCTCTCTCGCTCCTGCATC 59.688 60.000 0.00 0.00 39.64 3.91
127 128 0.106769 TCTCTCTCGCTCCTGCATCT 60.107 55.000 0.00 0.00 39.64 2.90
128 129 0.311790 CTCTCTCGCTCCTGCATCTC 59.688 60.000 0.00 0.00 39.64 2.75
129 130 0.394899 TCTCTCGCTCCTGCATCTCA 60.395 55.000 0.00 0.00 39.64 3.27
130 131 0.459078 CTCTCGCTCCTGCATCTCAA 59.541 55.000 0.00 0.00 39.64 3.02
131 132 0.459078 TCTCGCTCCTGCATCTCAAG 59.541 55.000 0.00 0.00 39.64 3.02
132 133 0.530211 CTCGCTCCTGCATCTCAAGG 60.530 60.000 0.00 0.00 39.64 3.61
133 134 0.972471 TCGCTCCTGCATCTCAAGGA 60.972 55.000 0.00 0.00 39.64 3.36
135 136 3.383092 CTCCTGCATCTCAAGGAGC 57.617 57.895 5.82 0.00 41.02 4.70
136 137 0.831966 CTCCTGCATCTCAAGGAGCT 59.168 55.000 5.82 0.00 41.02 4.09
137 138 0.829333 TCCTGCATCTCAAGGAGCTC 59.171 55.000 4.71 4.71 0.00 4.09
138 139 0.831966 CCTGCATCTCAAGGAGCTCT 59.168 55.000 14.64 0.00 0.00 4.09
139 140 1.202557 CCTGCATCTCAAGGAGCTCTC 60.203 57.143 14.64 3.76 0.00 3.20
140 141 0.459078 TGCATCTCAAGGAGCTCTCG 59.541 55.000 14.64 2.38 0.00 4.04
141 142 0.743688 GCATCTCAAGGAGCTCTCGA 59.256 55.000 14.64 6.87 0.00 4.04
142 143 1.135915 GCATCTCAAGGAGCTCTCGAA 59.864 52.381 14.64 0.00 0.00 3.71
143 144 2.224018 GCATCTCAAGGAGCTCTCGAAT 60.224 50.000 14.64 0.00 0.00 3.34
144 145 3.740764 GCATCTCAAGGAGCTCTCGAATT 60.741 47.826 14.64 0.00 0.00 2.17
145 146 3.516981 TCTCAAGGAGCTCTCGAATTG 57.483 47.619 14.64 10.91 0.00 2.32
146 147 1.932511 CTCAAGGAGCTCTCGAATTGC 59.067 52.381 14.64 0.00 0.00 3.56
147 148 1.012841 CAAGGAGCTCTCGAATTGCC 58.987 55.000 14.64 0.00 0.00 4.52
148 149 0.460987 AAGGAGCTCTCGAATTGCCG 60.461 55.000 14.64 0.00 0.00 5.69
149 150 1.153549 GGAGCTCTCGAATTGCCGT 60.154 57.895 14.64 0.00 0.00 5.68
150 151 1.424493 GGAGCTCTCGAATTGCCGTG 61.424 60.000 14.64 0.00 0.00 4.94
151 152 0.737715 GAGCTCTCGAATTGCCGTGT 60.738 55.000 6.43 0.00 0.00 4.49
152 153 0.320771 AGCTCTCGAATTGCCGTGTT 60.321 50.000 0.00 0.00 0.00 3.32
153 154 0.517316 GCTCTCGAATTGCCGTGTTT 59.483 50.000 0.00 0.00 0.00 2.83
154 155 1.730064 GCTCTCGAATTGCCGTGTTTA 59.270 47.619 0.00 0.00 0.00 2.01
155 156 2.158841 GCTCTCGAATTGCCGTGTTTAA 59.841 45.455 0.00 0.00 0.00 1.52
156 157 3.725010 GCTCTCGAATTGCCGTGTTTAAG 60.725 47.826 0.00 0.00 0.00 1.85
157 158 3.655486 TCTCGAATTGCCGTGTTTAAGA 58.345 40.909 0.00 0.00 0.00 2.10
158 159 3.678072 TCTCGAATTGCCGTGTTTAAGAG 59.322 43.478 0.00 0.00 0.00 2.85
159 160 2.158841 TCGAATTGCCGTGTTTAAGAGC 59.841 45.455 0.00 0.00 0.00 4.09
160 161 2.095969 CGAATTGCCGTGTTTAAGAGCA 60.096 45.455 0.00 0.00 0.00 4.26
161 162 3.426159 CGAATTGCCGTGTTTAAGAGCAT 60.426 43.478 0.00 0.00 32.67 3.79
162 163 3.764885 ATTGCCGTGTTTAAGAGCATC 57.235 42.857 0.00 0.00 32.67 3.91
163 164 1.448985 TGCCGTGTTTAAGAGCATCC 58.551 50.000 0.00 0.00 33.66 3.51
164 165 0.733150 GCCGTGTTTAAGAGCATCCC 59.267 55.000 0.00 0.00 33.66 3.85
165 166 1.948611 GCCGTGTTTAAGAGCATCCCA 60.949 52.381 0.00 0.00 33.66 4.37
166 167 1.737793 CCGTGTTTAAGAGCATCCCAC 59.262 52.381 0.00 0.00 33.66 4.61
167 168 1.393539 CGTGTTTAAGAGCATCCCACG 59.606 52.381 0.00 0.00 38.29 4.94
168 169 2.695359 GTGTTTAAGAGCATCCCACGA 58.305 47.619 0.00 0.00 33.66 4.35
169 170 2.415512 GTGTTTAAGAGCATCCCACGAC 59.584 50.000 0.00 0.00 33.66 4.34
170 171 2.037902 TGTTTAAGAGCATCCCACGACA 59.962 45.455 0.00 0.00 33.66 4.35
171 172 3.071479 GTTTAAGAGCATCCCACGACAA 58.929 45.455 0.00 0.00 33.66 3.18
172 173 3.627395 TTAAGAGCATCCCACGACAAT 57.373 42.857 0.00 0.00 33.66 2.71
173 174 2.496899 AAGAGCATCCCACGACAATT 57.503 45.000 0.00 0.00 33.66 2.32
174 175 2.029838 AGAGCATCCCACGACAATTC 57.970 50.000 0.00 0.00 33.66 2.17
175 176 1.017387 GAGCATCCCACGACAATTCC 58.983 55.000 0.00 0.00 0.00 3.01
176 177 0.327924 AGCATCCCACGACAATTCCA 59.672 50.000 0.00 0.00 0.00 3.53
177 178 0.734889 GCATCCCACGACAATTCCAG 59.265 55.000 0.00 0.00 0.00 3.86
178 179 1.382522 CATCCCACGACAATTCCAGG 58.617 55.000 0.00 0.00 0.00 4.45
179 180 0.394352 ATCCCACGACAATTCCAGGC 60.394 55.000 0.00 0.00 0.00 4.85
180 181 1.002134 CCCACGACAATTCCAGGCT 60.002 57.895 0.00 0.00 0.00 4.58
181 182 0.251916 CCCACGACAATTCCAGGCTA 59.748 55.000 0.00 0.00 0.00 3.93
182 183 1.134098 CCCACGACAATTCCAGGCTAT 60.134 52.381 0.00 0.00 0.00 2.97
183 184 1.942657 CCACGACAATTCCAGGCTATG 59.057 52.381 0.00 0.00 0.00 2.23
184 185 2.632377 CACGACAATTCCAGGCTATGT 58.368 47.619 0.00 0.00 0.00 2.29
185 186 2.352651 CACGACAATTCCAGGCTATGTG 59.647 50.000 0.00 0.00 0.00 3.21
186 187 2.027192 ACGACAATTCCAGGCTATGTGT 60.027 45.455 0.00 0.00 0.00 3.72
187 188 2.609459 CGACAATTCCAGGCTATGTGTC 59.391 50.000 0.00 0.00 0.00 3.67
188 189 3.679917 CGACAATTCCAGGCTATGTGTCT 60.680 47.826 11.63 0.00 33.41 3.41
189 190 3.873952 GACAATTCCAGGCTATGTGTCTC 59.126 47.826 0.00 0.00 32.94 3.36
190 191 3.264193 ACAATTCCAGGCTATGTGTCTCA 59.736 43.478 0.00 0.00 0.00 3.27
191 192 4.080129 ACAATTCCAGGCTATGTGTCTCAT 60.080 41.667 0.00 0.00 40.25 2.90
192 193 4.785346 ATTCCAGGCTATGTGTCTCATT 57.215 40.909 0.00 0.00 37.91 2.57
193 194 3.548745 TCCAGGCTATGTGTCTCATTG 57.451 47.619 0.00 0.00 37.91 2.82
199 200 4.533225 GCTATGTGTCTCATTGCTCTTG 57.467 45.455 12.21 0.00 46.28 3.02
200 201 3.311871 GCTATGTGTCTCATTGCTCTTGG 59.688 47.826 12.21 0.00 46.28 3.61
201 202 1.527034 TGTGTCTCATTGCTCTTGGC 58.473 50.000 0.00 0.00 42.22 4.52
202 203 0.445436 GTGTCTCATTGCTCTTGGCG 59.555 55.000 0.00 0.00 45.43 5.69
203 204 0.674581 TGTCTCATTGCTCTTGGCGG 60.675 55.000 0.00 0.00 45.43 6.13
204 205 0.674895 GTCTCATTGCTCTTGGCGGT 60.675 55.000 0.00 0.00 45.43 5.68
205 206 0.391661 TCTCATTGCTCTTGGCGGTC 60.392 55.000 0.00 0.00 45.43 4.79
206 207 1.372087 CTCATTGCTCTTGGCGGTCC 61.372 60.000 0.00 0.00 45.43 4.46
207 208 1.377725 CATTGCTCTTGGCGGTCCT 60.378 57.895 0.00 0.00 45.43 3.85
208 209 1.078143 ATTGCTCTTGGCGGTCCTC 60.078 57.895 0.00 0.00 45.43 3.71
209 210 1.557269 ATTGCTCTTGGCGGTCCTCT 61.557 55.000 0.00 0.00 45.43 3.69
210 211 2.125350 GCTCTTGGCGGTCCTCTG 60.125 66.667 0.00 0.00 0.00 3.35
211 212 2.650116 GCTCTTGGCGGTCCTCTGA 61.650 63.158 0.00 0.00 0.00 3.27
212 213 1.965754 GCTCTTGGCGGTCCTCTGAT 61.966 60.000 0.00 0.00 0.00 2.90
213 214 0.103937 CTCTTGGCGGTCCTCTGATC 59.896 60.000 0.00 0.00 0.00 2.92
214 215 1.144936 CTTGGCGGTCCTCTGATCC 59.855 63.158 0.00 0.00 0.00 3.36
215 216 1.612146 TTGGCGGTCCTCTGATCCA 60.612 57.895 0.00 0.00 0.00 3.41
216 217 1.198094 TTGGCGGTCCTCTGATCCAA 61.198 55.000 0.00 0.00 0.00 3.53
217 218 1.153349 GGCGGTCCTCTGATCCAAC 60.153 63.158 0.00 0.00 0.00 3.77
218 219 1.617947 GGCGGTCCTCTGATCCAACT 61.618 60.000 0.00 0.00 0.00 3.16
219 220 0.179097 GCGGTCCTCTGATCCAACTC 60.179 60.000 0.00 0.00 0.00 3.01
220 221 0.461961 CGGTCCTCTGATCCAACTCC 59.538 60.000 0.00 0.00 0.00 3.85
221 222 1.573108 GGTCCTCTGATCCAACTCCA 58.427 55.000 0.00 0.00 0.00 3.86
222 223 1.208293 GGTCCTCTGATCCAACTCCAC 59.792 57.143 0.00 0.00 0.00 4.02
223 224 1.208293 GTCCTCTGATCCAACTCCACC 59.792 57.143 0.00 0.00 0.00 4.61
224 225 1.203300 TCCTCTGATCCAACTCCACCA 60.203 52.381 0.00 0.00 0.00 4.17
225 226 1.630369 CCTCTGATCCAACTCCACCAA 59.370 52.381 0.00 0.00 0.00 3.67
226 227 2.355513 CCTCTGATCCAACTCCACCAAG 60.356 54.545 0.00 0.00 0.00 3.61
227 228 2.568956 CTCTGATCCAACTCCACCAAGA 59.431 50.000 0.00 0.00 0.00 3.02
228 229 2.303022 TCTGATCCAACTCCACCAAGAC 59.697 50.000 0.00 0.00 0.00 3.01
229 230 2.038952 CTGATCCAACTCCACCAAGACA 59.961 50.000 0.00 0.00 0.00 3.41
230 231 2.441375 TGATCCAACTCCACCAAGACAA 59.559 45.455 0.00 0.00 0.00 3.18
231 232 3.117701 TGATCCAACTCCACCAAGACAAA 60.118 43.478 0.00 0.00 0.00 2.83
232 233 3.593442 TCCAACTCCACCAAGACAAAT 57.407 42.857 0.00 0.00 0.00 2.32
233 234 3.909732 TCCAACTCCACCAAGACAAATT 58.090 40.909 0.00 0.00 0.00 1.82
234 235 3.636300 TCCAACTCCACCAAGACAAATTG 59.364 43.478 0.00 0.00 0.00 2.32
235 236 3.383761 CAACTCCACCAAGACAAATTGC 58.616 45.455 0.00 0.00 0.00 3.56
236 237 1.963515 ACTCCACCAAGACAAATTGCC 59.036 47.619 0.00 0.00 0.00 4.52
237 238 1.962807 CTCCACCAAGACAAATTGCCA 59.037 47.619 0.00 0.00 0.00 4.92
238 239 1.686052 TCCACCAAGACAAATTGCCAC 59.314 47.619 0.00 0.00 0.00 5.01
239 240 1.411977 CCACCAAGACAAATTGCCACA 59.588 47.619 0.00 0.00 0.00 4.17
240 241 2.158986 CCACCAAGACAAATTGCCACAA 60.159 45.455 0.00 0.00 0.00 3.33
241 242 2.865551 CACCAAGACAAATTGCCACAAC 59.134 45.455 0.00 0.00 0.00 3.32
242 243 2.499289 ACCAAGACAAATTGCCACAACA 59.501 40.909 0.00 0.00 0.00 3.33
243 244 2.865551 CCAAGACAAATTGCCACAACAC 59.134 45.455 0.00 0.00 0.00 3.32
244 245 2.865551 CAAGACAAATTGCCACAACACC 59.134 45.455 0.00 0.00 0.00 4.16
245 246 2.387757 AGACAAATTGCCACAACACCT 58.612 42.857 0.00 0.00 0.00 4.00
246 247 3.561143 AGACAAATTGCCACAACACCTA 58.439 40.909 0.00 0.00 0.00 3.08
247 248 3.957497 AGACAAATTGCCACAACACCTAA 59.043 39.130 0.00 0.00 0.00 2.69
248 249 4.404073 AGACAAATTGCCACAACACCTAAA 59.596 37.500 0.00 0.00 0.00 1.85
249 250 4.438148 ACAAATTGCCACAACACCTAAAC 58.562 39.130 0.00 0.00 0.00 2.01
250 251 4.081420 ACAAATTGCCACAACACCTAAACA 60.081 37.500 0.00 0.00 0.00 2.83
251 252 4.744795 AATTGCCACAACACCTAAACAA 57.255 36.364 0.00 0.00 0.00 2.83
252 253 4.953940 ATTGCCACAACACCTAAACAAT 57.046 36.364 0.00 0.00 0.00 2.71
253 254 4.744795 TTGCCACAACACCTAAACAATT 57.255 36.364 0.00 0.00 0.00 2.32
254 255 4.314740 TGCCACAACACCTAAACAATTC 57.685 40.909 0.00 0.00 0.00 2.17
255 256 3.701542 TGCCACAACACCTAAACAATTCA 59.298 39.130 0.00 0.00 0.00 2.57
256 257 4.048504 GCCACAACACCTAAACAATTCAC 58.951 43.478 0.00 0.00 0.00 3.18
257 258 4.616953 CCACAACACCTAAACAATTCACC 58.383 43.478 0.00 0.00 0.00 4.02
258 259 4.286910 CACAACACCTAAACAATTCACCG 58.713 43.478 0.00 0.00 0.00 4.94
259 260 3.243267 ACAACACCTAAACAATTCACCGC 60.243 43.478 0.00 0.00 0.00 5.68
260 261 2.577700 ACACCTAAACAATTCACCGCA 58.422 42.857 0.00 0.00 0.00 5.69
261 262 3.153919 ACACCTAAACAATTCACCGCAT 58.846 40.909 0.00 0.00 0.00 4.73
262 263 3.190535 ACACCTAAACAATTCACCGCATC 59.809 43.478 0.00 0.00 0.00 3.91
263 264 3.440173 CACCTAAACAATTCACCGCATCT 59.560 43.478 0.00 0.00 0.00 2.90
264 265 4.634004 CACCTAAACAATTCACCGCATCTA 59.366 41.667 0.00 0.00 0.00 1.98
265 266 5.296780 CACCTAAACAATTCACCGCATCTAT 59.703 40.000 0.00 0.00 0.00 1.98
266 267 5.296780 ACCTAAACAATTCACCGCATCTATG 59.703 40.000 0.00 0.00 0.00 2.23
267 268 5.527214 CCTAAACAATTCACCGCATCTATGA 59.473 40.000 0.00 0.00 0.00 2.15
268 269 5.895636 AAACAATTCACCGCATCTATGAA 57.104 34.783 0.00 0.00 36.81 2.57
269 270 5.490139 AACAATTCACCGCATCTATGAAG 57.510 39.130 0.00 0.00 35.89 3.02
270 271 3.313526 ACAATTCACCGCATCTATGAAGC 59.686 43.478 0.00 0.00 35.89 3.86
271 272 2.988010 TTCACCGCATCTATGAAGCT 57.012 45.000 0.00 0.00 0.00 3.74
272 273 2.515926 TCACCGCATCTATGAAGCTC 57.484 50.000 0.00 0.00 0.00 4.09
273 274 2.034878 TCACCGCATCTATGAAGCTCT 58.965 47.619 0.00 0.00 0.00 4.09
274 275 3.222603 TCACCGCATCTATGAAGCTCTA 58.777 45.455 0.00 0.00 0.00 2.43
275 276 3.254411 TCACCGCATCTATGAAGCTCTAG 59.746 47.826 0.00 0.00 0.00 2.43
276 277 3.254411 CACCGCATCTATGAAGCTCTAGA 59.746 47.826 0.00 0.00 0.00 2.43
277 278 3.505680 ACCGCATCTATGAAGCTCTAGAG 59.494 47.826 15.85 15.85 0.00 2.43
286 287 4.411136 GCTCTAGAGCGCCACTTC 57.589 61.111 28.04 1.45 45.29 3.01
287 288 1.227118 GCTCTAGAGCGCCACTTCC 60.227 63.158 28.04 0.70 45.29 3.46
288 289 1.439644 CTCTAGAGCGCCACTTCCC 59.560 63.158 6.86 0.00 0.00 3.97
289 290 2.022240 CTCTAGAGCGCCACTTCCCC 62.022 65.000 6.86 0.00 0.00 4.81
290 291 3.432051 CTAGAGCGCCACTTCCCCG 62.432 68.421 2.29 0.00 0.00 5.73
295 296 3.691342 CGCCACTTCCCCGTGAGA 61.691 66.667 0.00 0.00 37.06 3.27
296 297 2.747686 GCCACTTCCCCGTGAGAA 59.252 61.111 0.00 0.00 37.06 2.87
297 298 1.299976 GCCACTTCCCCGTGAGAAT 59.700 57.895 0.00 0.00 37.06 2.40
298 299 0.744771 GCCACTTCCCCGTGAGAATC 60.745 60.000 0.00 0.00 37.06 2.52
299 300 0.905357 CCACTTCCCCGTGAGAATCT 59.095 55.000 0.00 0.00 37.06 2.40
300 301 1.134670 CCACTTCCCCGTGAGAATCTC 60.135 57.143 2.75 2.75 37.06 2.75
301 302 1.550524 CACTTCCCCGTGAGAATCTCA 59.449 52.381 9.18 9.18 38.25 3.27
302 303 1.827969 ACTTCCCCGTGAGAATCTCAG 59.172 52.381 13.98 7.83 41.46 3.35
303 304 2.103373 CTTCCCCGTGAGAATCTCAGA 58.897 52.381 13.98 4.52 41.46 3.27
304 305 2.231716 TCCCCGTGAGAATCTCAGAA 57.768 50.000 13.98 0.00 41.46 3.02
305 306 2.536066 TCCCCGTGAGAATCTCAGAAA 58.464 47.619 13.98 0.00 41.46 2.52
306 307 2.903784 TCCCCGTGAGAATCTCAGAAAA 59.096 45.455 13.98 0.00 41.46 2.29
307 308 3.003480 CCCCGTGAGAATCTCAGAAAAC 58.997 50.000 13.98 0.37 41.46 2.43
308 309 3.003480 CCCGTGAGAATCTCAGAAAACC 58.997 50.000 13.98 0.00 41.46 3.27
309 310 3.557054 CCCGTGAGAATCTCAGAAAACCA 60.557 47.826 13.98 0.00 41.46 3.67
310 311 4.256920 CCGTGAGAATCTCAGAAAACCAT 58.743 43.478 13.98 0.00 41.46 3.55
311 312 4.093998 CCGTGAGAATCTCAGAAAACCATG 59.906 45.833 13.98 0.00 41.46 3.66
312 313 4.436584 CGTGAGAATCTCAGAAAACCATGC 60.437 45.833 13.98 0.00 41.46 4.06
313 314 4.456911 GTGAGAATCTCAGAAAACCATGCA 59.543 41.667 13.98 0.00 41.46 3.96
314 315 4.456911 TGAGAATCTCAGAAAACCATGCAC 59.543 41.667 9.18 0.00 35.39 4.57
315 316 3.438087 AGAATCTCAGAAAACCATGCACG 59.562 43.478 0.00 0.00 0.00 5.34
316 317 1.522668 TCTCAGAAAACCATGCACGG 58.477 50.000 0.00 0.00 0.00 4.94
317 318 1.202758 TCTCAGAAAACCATGCACGGT 60.203 47.619 0.00 0.00 42.71 4.83
318 319 2.037902 TCTCAGAAAACCATGCACGGTA 59.962 45.455 4.13 0.00 38.76 4.02
319 320 3.009723 CTCAGAAAACCATGCACGGTAT 58.990 45.455 4.13 0.00 38.76 2.73
320 321 2.746904 TCAGAAAACCATGCACGGTATG 59.253 45.455 4.13 2.32 38.76 2.39
329 330 3.151710 CACGGTATGCCCCTCCGA 61.152 66.667 9.75 0.00 46.05 4.55
330 331 2.122989 ACGGTATGCCCCTCCGAT 60.123 61.111 9.75 0.00 46.05 4.18
331 332 2.207924 ACGGTATGCCCCTCCGATC 61.208 63.158 9.75 0.00 46.05 3.69
332 333 2.207229 CGGTATGCCCCTCCGATCA 61.207 63.158 0.00 0.00 46.05 2.92
333 334 1.754380 CGGTATGCCCCTCCGATCAA 61.754 60.000 0.00 0.00 46.05 2.57
334 335 0.472471 GGTATGCCCCTCCGATCAAA 59.528 55.000 0.00 0.00 0.00 2.69
335 336 1.133915 GGTATGCCCCTCCGATCAAAA 60.134 52.381 0.00 0.00 0.00 2.44
336 337 1.947456 GTATGCCCCTCCGATCAAAAC 59.053 52.381 0.00 0.00 0.00 2.43
337 338 0.395724 ATGCCCCTCCGATCAAAACC 60.396 55.000 0.00 0.00 0.00 3.27
338 339 2.112815 GCCCCTCCGATCAAAACCG 61.113 63.158 0.00 0.00 0.00 4.44
339 340 1.451387 CCCCTCCGATCAAAACCGG 60.451 63.158 0.00 0.00 46.57 5.28
340 341 2.112815 CCCTCCGATCAAAACCGGC 61.113 63.158 0.00 0.00 44.96 6.13
341 342 1.078426 CCTCCGATCAAAACCGGCT 60.078 57.895 0.00 0.00 44.96 5.52
342 343 1.369091 CCTCCGATCAAAACCGGCTG 61.369 60.000 0.00 0.00 44.96 4.85
343 344 0.391130 CTCCGATCAAAACCGGCTGA 60.391 55.000 0.00 1.95 44.96 4.26
344 345 0.391130 TCCGATCAAAACCGGCTGAG 60.391 55.000 0.00 0.00 44.96 3.35
345 346 0.673644 CCGATCAAAACCGGCTGAGT 60.674 55.000 0.00 0.00 39.22 3.41
346 347 1.404986 CCGATCAAAACCGGCTGAGTA 60.405 52.381 0.00 0.00 39.22 2.59
347 348 1.927174 CGATCAAAACCGGCTGAGTAG 59.073 52.381 0.00 0.00 0.00 2.57
348 349 2.416836 CGATCAAAACCGGCTGAGTAGA 60.417 50.000 0.00 0.00 0.00 2.59
349 350 2.743636 TCAAAACCGGCTGAGTAGAG 57.256 50.000 0.00 0.00 0.00 2.43
350 351 2.244695 TCAAAACCGGCTGAGTAGAGA 58.755 47.619 0.00 0.00 0.00 3.10
354 355 1.926108 ACCGGCTGAGTAGAGAACTT 58.074 50.000 0.00 0.00 39.07 2.66
489 490 1.133699 ACACTGGCATATGGACCCATG 60.134 52.381 11.61 5.55 37.82 3.66
505 506 4.917385 ACCCATGTTTCTAATGTGTGCTA 58.083 39.130 0.00 0.00 0.00 3.49
526 527 0.034767 CATGGCATCTGTCTGGGTGT 60.035 55.000 0.00 0.00 0.00 4.16
556 557 2.741092 GAGACGTTGCCAGGACCA 59.259 61.111 0.00 0.00 0.00 4.02
567 568 1.212935 GCCAGGACCATATTGGAGTGT 59.787 52.381 1.66 0.00 40.96 3.55
595 596 7.556635 TCATCGTATATAAGGACCATAGTGGAG 59.443 40.741 2.45 0.00 40.96 3.86
603 604 3.461085 AGGACCATAGTGGAGCATTTCAT 59.539 43.478 2.45 0.00 40.96 2.57
612 613 5.014858 AGTGGAGCATTTCATGACTTTGAT 58.985 37.500 0.00 0.00 0.00 2.57
626 627 5.487433 TGACTTTGATGACCATCGTGTTAT 58.513 37.500 5.63 0.00 40.63 1.89
646 647 8.502387 GTGTTATACGTCGGAGAGTATAAGAAT 58.498 37.037 18.49 0.53 40.30 2.40
725 726 5.857471 ATTTATGTTGACACATCCCATGG 57.143 39.130 4.14 4.14 43.06 3.66
745 746 7.091443 CCATGGAAGATAAACGAGTAGGATAC 58.909 42.308 5.56 0.00 43.47 2.24
771 772 7.646922 CAGGATATGCAAAGCTTTCTGAAATAC 59.353 37.037 9.23 0.77 0.00 1.89
772 773 6.634436 GGATATGCAAAGCTTTCTGAAATACG 59.366 38.462 9.23 0.00 0.00 3.06
783 1578 4.288670 TCTGAAATACGTAGAAGAGGCG 57.711 45.455 0.08 0.00 0.00 5.52
909 1704 1.219522 CGGAGCCGCCTATAAAACCG 61.220 60.000 0.00 0.00 0.00 4.44
1066 1863 4.742201 GGAAGCTCAGCGTCCGCA 62.742 66.667 16.44 0.00 45.79 5.69
1169 1976 1.696884 GGTCAGATCCTCATCCCCTTC 59.303 57.143 0.00 0.00 0.00 3.46
1175 1984 0.421495 TCCTCATCCCCTTCTTCCCA 59.579 55.000 0.00 0.00 0.00 4.37
1176 1985 0.842635 CCTCATCCCCTTCTTCCCAG 59.157 60.000 0.00 0.00 0.00 4.45
1177 1986 1.589414 CTCATCCCCTTCTTCCCAGT 58.411 55.000 0.00 0.00 0.00 4.00
1179 1988 0.548510 CATCCCCTTCTTCCCAGTCC 59.451 60.000 0.00 0.00 0.00 3.85
1181 1990 0.196118 TCCCCTTCTTCCCAGTCCTT 59.804 55.000 0.00 0.00 0.00 3.36
1182 1991 0.329596 CCCCTTCTTCCCAGTCCTTG 59.670 60.000 0.00 0.00 0.00 3.61
1195 2004 1.077805 TCCTTGGACGTAGGAGCCA 59.922 57.895 1.23 0.00 36.88 4.75
1262 2089 1.108776 ACGACCCACGCATACATAGT 58.891 50.000 0.00 0.00 46.94 2.12
1266 2093 3.488310 CGACCCACGCATACATAGTTTAC 59.512 47.826 0.00 0.00 34.51 2.01
1517 2363 3.365969 GGAATTTCAAGACCGACGCATTT 60.366 43.478 0.00 0.00 0.00 2.32
1518 2364 2.679355 TTTCAAGACCGACGCATTTG 57.321 45.000 0.00 0.00 0.00 2.32
1519 2365 0.871722 TTCAAGACCGACGCATTTGG 59.128 50.000 0.00 0.00 34.29 3.28
1577 2423 5.468072 AGCATGTTGAACTGAACTACTGAAG 59.532 40.000 0.00 0.00 0.00 3.02
1644 2490 5.902613 AATCGTGATGGAAATGTGAATGT 57.097 34.783 0.00 0.00 0.00 2.71
1693 2539 6.893554 AGTACCAAAACCTAAAAGTTCACCTT 59.106 34.615 0.00 0.00 33.79 3.50
1694 2540 6.216801 ACCAAAACCTAAAAGTTCACCTTC 57.783 37.500 0.00 0.00 31.27 3.46
1759 2868 9.228077 ACCTACCCAATGGTTTATATAGTACAA 57.772 33.333 0.00 0.00 44.75 2.41
1887 3004 6.569035 GCATGATGTCAGATTTTCAGTTCACA 60.569 38.462 0.00 0.00 0.00 3.58
1901 3021 9.979578 TTTTCAGTTCACAATTATGCACTATTT 57.020 25.926 0.00 0.00 0.00 1.40
1902 3022 9.979578 TTTCAGTTCACAATTATGCACTATTTT 57.020 25.926 0.00 0.00 0.00 1.82
1903 3023 9.979578 TTCAGTTCACAATTATGCACTATTTTT 57.020 25.926 0.00 0.00 0.00 1.94
1993 3118 2.159240 TGACATGGACAGCTATCGTGTC 60.159 50.000 17.44 17.44 43.12 3.67
2195 3337 8.370493 TGAGTTTCTTCATCAAGTAAACTCTG 57.630 34.615 22.23 0.73 44.65 3.35
2266 3466 7.062605 GGAACTTCAGTTAACAATGATTGCATG 59.937 37.037 8.61 0.00 38.56 4.06
2277 3477 7.989416 ACAATGATTGCATGGAATTTTCTTT 57.011 28.000 14.12 4.42 34.26 2.52
2299 3504 9.033481 TCTTTTGTGCTGAAACATGAAAAATAG 57.967 29.630 0.00 0.00 0.00 1.73
2300 3505 7.712264 TTTGTGCTGAAACATGAAAAATAGG 57.288 32.000 0.00 0.00 0.00 2.57
2403 3614 4.151121 TCATGCAGGAGGTTTTTGATGAA 58.849 39.130 0.00 0.00 0.00 2.57
2448 3659 1.067295 TGGGAGTGGCTGAGTTCAAT 58.933 50.000 0.00 0.00 0.00 2.57
2474 3685 4.554292 ACTGATATCTATGACGCTGCAAG 58.446 43.478 3.98 0.00 0.00 4.01
2548 3759 0.106469 TGGCACAAACTACCTTGGCA 60.106 50.000 0.00 0.00 41.76 4.92
2783 4001 4.751767 ATTTGTGGATGTTGTGGTTTGT 57.248 36.364 0.00 0.00 0.00 2.83
2831 4053 5.900865 TGATTTCAGCTTGATGTATGCAA 57.099 34.783 0.00 0.00 32.18 4.08
2861 4083 5.353938 TGTAGTACTGTGGTTGTGAAGTTC 58.646 41.667 5.39 0.00 0.00 3.01
2862 4084 4.481368 AGTACTGTGGTTGTGAAGTTCA 57.519 40.909 0.08 0.08 0.00 3.18
2929 4157 7.957484 CACTGAGGTGTAATTTAAGAATTCACG 59.043 37.037 8.44 0.00 38.54 4.35
2991 4365 7.447374 AATTTTCACCTGAATCAACATCGTA 57.553 32.000 0.00 0.00 33.54 3.43
2994 4368 5.337578 TCACCTGAATCAACATCGTATGA 57.662 39.130 2.48 0.00 0.00 2.15
3021 4395 1.587946 CGCAGAGCAACCAAAAACAAC 59.412 47.619 0.00 0.00 0.00 3.32
3022 4396 2.615869 GCAGAGCAACCAAAAACAACA 58.384 42.857 0.00 0.00 0.00 3.33
3023 4397 2.348362 GCAGAGCAACCAAAAACAACAC 59.652 45.455 0.00 0.00 0.00 3.32
3025 4399 3.993081 CAGAGCAACCAAAAACAACACAA 59.007 39.130 0.00 0.00 0.00 3.33
3027 4401 5.122082 CAGAGCAACCAAAAACAACACAAAT 59.878 36.000 0.00 0.00 0.00 2.32
3028 4402 5.704978 AGAGCAACCAAAAACAACACAAATT 59.295 32.000 0.00 0.00 0.00 1.82
3029 4403 5.697826 AGCAACCAAAAACAACACAAATTG 58.302 33.333 0.00 0.00 35.59 2.32
3031 4405 6.150809 AGCAACCAAAAACAACACAAATTGAT 59.849 30.769 0.00 0.00 33.57 2.57
3068 4480 3.550431 ATACGCGGCTGCCTCCAT 61.550 61.111 17.92 0.72 38.08 3.41
3122 4534 1.805945 GCAACCCAGCTCGTACTCG 60.806 63.158 0.00 0.00 38.55 4.18
3204 4616 7.921745 GCGTAACTTTCTCTCTCTATACCATTT 59.078 37.037 0.00 0.00 0.00 2.32
3237 4651 0.890542 GGATGTTGTGAGCTGGTGCA 60.891 55.000 0.00 0.00 42.74 4.57
3294 4791 0.666913 GATGAGCGGCTGATTGCAAT 59.333 50.000 12.83 12.83 45.15 3.56
3318 4815 0.168128 CCGGCGTTTCTGAAACATCC 59.832 55.000 27.24 24.28 41.44 3.51
3347 4861 1.875963 GAAGGTGTGGATGTTGCGG 59.124 57.895 0.00 0.00 0.00 5.69
3355 4869 4.481112 GATGTTGCGGGCTTGCCG 62.481 66.667 5.49 0.00 0.00 5.69
3376 4890 2.995466 ATTGCAACTTCACCGTCATG 57.005 45.000 0.00 0.00 0.00 3.07
3391 4905 5.179368 CACCGTCATGTCTAAAACATCACTT 59.821 40.000 0.00 0.00 45.78 3.16
3555 5070 5.163953 CGAATGTTGTGAAGCTAGACGAATT 60.164 40.000 0.00 0.00 0.00 2.17
3562 5077 4.025647 GTGAAGCTAGACGAATTATGCACC 60.026 45.833 0.00 0.00 0.00 5.01
3574 5089 2.203549 TATGCACCGTGGGCCATTGA 62.204 55.000 10.70 0.00 0.00 2.57
3576 5091 2.961768 CACCGTGGGCCATTGAAC 59.038 61.111 10.70 0.00 0.00 3.18
3584 5099 3.747976 GCCATTGAACCGCGGCTT 61.748 61.111 28.58 18.95 41.50 4.35
3593 5108 0.532862 AACCGCGGCTTATCTGATGG 60.533 55.000 28.58 0.00 0.00 3.51
3594 5109 1.367471 CCGCGGCTTATCTGATGGA 59.633 57.895 14.67 0.00 0.00 3.41
3600 5115 1.003003 GGCTTATCTGATGGAGGAGGC 59.997 57.143 0.00 0.01 0.00 4.70
3601 5116 1.696336 GCTTATCTGATGGAGGAGGCA 59.304 52.381 0.00 0.00 0.00 4.75
3713 5231 4.803613 GCCTGCCCATTTTTATAGAAAACG 59.196 41.667 0.00 0.00 34.24 3.60
3799 5317 5.539582 TGATTGGATGTTGCGTTAAGTAC 57.460 39.130 0.00 0.00 0.00 2.73
3808 5326 6.606234 TGTTGCGTTAAGTACAAATGAAGA 57.394 33.333 0.00 0.00 0.00 2.87
3895 5414 5.689383 TTTCACTGAAATTGCACTCCTAC 57.311 39.130 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.578005 ATCAATCTGAAAGTGATGGCAAG 57.422 39.130 0.00 0.00 30.84 4.01
1 2 5.945191 TGTATCAATCTGAAAGTGATGGCAA 59.055 36.000 0.00 0.00 34.01 4.52
2 3 5.499313 TGTATCAATCTGAAAGTGATGGCA 58.501 37.500 10.42 0.00 34.01 4.92
3 4 6.261603 TCATGTATCAATCTGAAAGTGATGGC 59.738 38.462 10.42 5.89 34.01 4.40
4 5 7.797038 TCATGTATCAATCTGAAAGTGATGG 57.203 36.000 10.42 0.00 34.01 3.51
7 8 9.452287 TGATTTCATGTATCAATCTGAAAGTGA 57.548 29.630 9.73 0.00 39.98 3.41
12 13 9.859427 GGTTTTGATTTCATGTATCAATCTGAA 57.141 29.630 19.40 12.00 40.57 3.02
13 14 9.246670 AGGTTTTGATTTCATGTATCAATCTGA 57.753 29.630 19.40 8.21 40.57 3.27
19 20 9.389755 TCGATTAGGTTTTGATTTCATGTATCA 57.610 29.630 8.53 8.53 0.00 2.15
23 24 8.190784 GGATTCGATTAGGTTTTGATTTCATGT 58.809 33.333 0.00 0.00 0.00 3.21
24 25 8.190122 TGGATTCGATTAGGTTTTGATTTCATG 58.810 33.333 0.00 0.00 0.00 3.07
25 26 8.292444 TGGATTCGATTAGGTTTTGATTTCAT 57.708 30.769 0.00 0.00 0.00 2.57
26 27 7.695480 TGGATTCGATTAGGTTTTGATTTCA 57.305 32.000 0.00 0.00 0.00 2.69
27 28 9.884465 CTATGGATTCGATTAGGTTTTGATTTC 57.116 33.333 0.00 0.00 0.00 2.17
28 29 9.627123 TCTATGGATTCGATTAGGTTTTGATTT 57.373 29.630 0.00 0.00 0.00 2.17
29 30 9.799106 ATCTATGGATTCGATTAGGTTTTGATT 57.201 29.630 0.00 0.00 0.00 2.57
30 31 9.442047 GATCTATGGATTCGATTAGGTTTTGAT 57.558 33.333 0.00 0.00 31.46 2.57
31 32 8.428852 TGATCTATGGATTCGATTAGGTTTTGA 58.571 33.333 0.00 0.00 31.46 2.69
32 33 8.607441 TGATCTATGGATTCGATTAGGTTTTG 57.393 34.615 0.00 0.00 31.46 2.44
33 34 9.442047 GATGATCTATGGATTCGATTAGGTTTT 57.558 33.333 0.00 0.00 31.46 2.43
34 35 8.820831 AGATGATCTATGGATTCGATTAGGTTT 58.179 33.333 0.00 0.00 31.46 3.27
35 36 8.256605 CAGATGATCTATGGATTCGATTAGGTT 58.743 37.037 0.00 0.00 31.46 3.50
36 37 7.632462 GCAGATGATCTATGGATTCGATTAGGT 60.632 40.741 0.00 0.00 31.46 3.08
37 38 6.700960 GCAGATGATCTATGGATTCGATTAGG 59.299 42.308 0.00 0.00 31.46 2.69
38 39 6.700960 GGCAGATGATCTATGGATTCGATTAG 59.299 42.308 0.00 0.00 31.46 1.73
39 40 6.382282 AGGCAGATGATCTATGGATTCGATTA 59.618 38.462 0.00 0.00 31.46 1.75
40 41 5.189342 AGGCAGATGATCTATGGATTCGATT 59.811 40.000 0.00 0.00 31.46 3.34
41 42 4.715792 AGGCAGATGATCTATGGATTCGAT 59.284 41.667 0.00 0.00 31.46 3.59
42 43 4.092279 AGGCAGATGATCTATGGATTCGA 58.908 43.478 0.00 0.00 31.46 3.71
43 44 4.468765 AGGCAGATGATCTATGGATTCG 57.531 45.455 0.00 0.00 31.46 3.34
44 45 5.816777 GCTAAGGCAGATGATCTATGGATTC 59.183 44.000 0.00 0.00 38.54 2.52
45 46 5.488203 AGCTAAGGCAGATGATCTATGGATT 59.512 40.000 0.00 0.00 41.70 3.01
46 47 5.031495 AGCTAAGGCAGATGATCTATGGAT 58.969 41.667 0.00 0.00 41.70 3.41
47 48 4.423913 AGCTAAGGCAGATGATCTATGGA 58.576 43.478 0.00 0.00 41.70 3.41
48 49 4.822685 AGCTAAGGCAGATGATCTATGG 57.177 45.455 0.00 0.00 41.70 2.74
49 50 8.789825 AATAAAGCTAAGGCAGATGATCTATG 57.210 34.615 0.00 0.00 41.70 2.23
50 51 8.600668 TGAATAAAGCTAAGGCAGATGATCTAT 58.399 33.333 0.00 0.00 41.70 1.98
51 52 7.966812 TGAATAAAGCTAAGGCAGATGATCTA 58.033 34.615 0.00 0.00 41.70 1.98
52 53 6.835174 TGAATAAAGCTAAGGCAGATGATCT 58.165 36.000 0.00 0.00 41.70 2.75
53 54 7.228308 ACTTGAATAAAGCTAAGGCAGATGATC 59.772 37.037 0.00 0.00 39.76 2.92
54 55 7.013083 CACTTGAATAAAGCTAAGGCAGATGAT 59.987 37.037 0.00 0.00 39.76 2.45
55 56 6.317140 CACTTGAATAAAGCTAAGGCAGATGA 59.683 38.462 0.00 0.00 39.76 2.92
56 57 6.094603 ACACTTGAATAAAGCTAAGGCAGATG 59.905 38.462 0.00 0.00 39.76 2.90
57 58 6.094603 CACACTTGAATAAAGCTAAGGCAGAT 59.905 38.462 0.00 0.00 39.76 2.90
58 59 5.412594 CACACTTGAATAAAGCTAAGGCAGA 59.587 40.000 0.00 0.00 39.76 4.26
59 60 5.412594 TCACACTTGAATAAAGCTAAGGCAG 59.587 40.000 0.00 0.00 39.76 4.85
60 61 5.181245 GTCACACTTGAATAAAGCTAAGGCA 59.819 40.000 0.00 0.00 39.76 4.75
61 62 5.412904 AGTCACACTTGAATAAAGCTAAGGC 59.587 40.000 0.00 0.00 39.76 4.35
62 63 6.650807 TGAGTCACACTTGAATAAAGCTAAGG 59.349 38.462 0.00 0.00 39.76 2.69
63 64 7.600375 TCTGAGTCACACTTGAATAAAGCTAAG 59.400 37.037 0.00 0.00 39.76 2.18
64 65 7.385205 GTCTGAGTCACACTTGAATAAAGCTAA 59.615 37.037 0.00 0.00 39.76 3.09
65 66 6.868864 GTCTGAGTCACACTTGAATAAAGCTA 59.131 38.462 0.00 0.00 39.76 3.32
66 67 5.698545 GTCTGAGTCACACTTGAATAAAGCT 59.301 40.000 0.00 0.00 39.76 3.74
67 68 5.466728 TGTCTGAGTCACACTTGAATAAAGC 59.533 40.000 0.06 0.00 39.76 3.51
68 69 6.925718 TCTGTCTGAGTCACACTTGAATAAAG 59.074 38.462 0.06 0.00 42.07 1.85
69 70 6.816136 TCTGTCTGAGTCACACTTGAATAAA 58.184 36.000 0.06 0.00 31.90 1.40
70 71 6.405278 TCTGTCTGAGTCACACTTGAATAA 57.595 37.500 0.06 0.00 31.90 1.40
71 72 6.405278 TTCTGTCTGAGTCACACTTGAATA 57.595 37.500 0.06 0.00 31.90 1.75
72 73 4.944619 TCTGTCTGAGTCACACTTGAAT 57.055 40.909 0.06 0.00 31.90 2.57
73 74 4.736126 TTCTGTCTGAGTCACACTTGAA 57.264 40.909 0.06 2.68 31.90 2.69
74 75 4.736126 TTTCTGTCTGAGTCACACTTGA 57.264 40.909 0.06 0.00 0.00 3.02
75 76 5.801350 TTTTTCTGTCTGAGTCACACTTG 57.199 39.130 0.06 0.00 0.00 3.16
76 77 6.037610 GTGATTTTTCTGTCTGAGTCACACTT 59.962 38.462 0.06 0.00 35.89 3.16
77 78 5.525378 GTGATTTTTCTGTCTGAGTCACACT 59.475 40.000 0.06 0.00 35.89 3.55
78 79 5.294306 TGTGATTTTTCTGTCTGAGTCACAC 59.706 40.000 0.00 0.00 39.57 3.82
79 80 5.294306 GTGTGATTTTTCTGTCTGAGTCACA 59.706 40.000 0.00 0.00 41.44 3.58
80 81 5.525378 AGTGTGATTTTTCTGTCTGAGTCAC 59.475 40.000 0.00 0.00 36.26 3.67
81 82 5.674525 AGTGTGATTTTTCTGTCTGAGTCA 58.325 37.500 0.00 0.00 0.00 3.41
82 83 6.425504 CAAGTGTGATTTTTCTGTCTGAGTC 58.574 40.000 0.00 0.00 0.00 3.36
83 84 5.220931 GCAAGTGTGATTTTTCTGTCTGAGT 60.221 40.000 0.00 0.00 0.00 3.41
84 85 5.008415 AGCAAGTGTGATTTTTCTGTCTGAG 59.992 40.000 0.00 0.00 0.00 3.35
85 86 4.883585 AGCAAGTGTGATTTTTCTGTCTGA 59.116 37.500 0.00 0.00 0.00 3.27
86 87 5.008415 AGAGCAAGTGTGATTTTTCTGTCTG 59.992 40.000 0.00 0.00 0.00 3.51
87 88 5.128919 AGAGCAAGTGTGATTTTTCTGTCT 58.871 37.500 0.00 0.00 0.00 3.41
88 89 5.238214 AGAGAGCAAGTGTGATTTTTCTGTC 59.762 40.000 0.00 0.00 0.00 3.51
89 90 5.128919 AGAGAGCAAGTGTGATTTTTCTGT 58.871 37.500 0.00 0.00 0.00 3.41
90 91 5.469421 AGAGAGAGCAAGTGTGATTTTTCTG 59.531 40.000 0.00 0.00 0.00 3.02
91 92 5.619220 AGAGAGAGCAAGTGTGATTTTTCT 58.381 37.500 0.00 0.00 0.00 2.52
92 93 5.389307 CGAGAGAGAGCAAGTGTGATTTTTC 60.389 44.000 0.00 0.00 0.00 2.29
93 94 4.450419 CGAGAGAGAGCAAGTGTGATTTTT 59.550 41.667 0.00 0.00 0.00 1.94
94 95 3.993081 CGAGAGAGAGCAAGTGTGATTTT 59.007 43.478 0.00 0.00 0.00 1.82
95 96 3.583806 CGAGAGAGAGCAAGTGTGATTT 58.416 45.455 0.00 0.00 0.00 2.17
96 97 2.673610 GCGAGAGAGAGCAAGTGTGATT 60.674 50.000 0.00 0.00 0.00 2.57
97 98 1.135141 GCGAGAGAGAGCAAGTGTGAT 60.135 52.381 0.00 0.00 0.00 3.06
98 99 0.242286 GCGAGAGAGAGCAAGTGTGA 59.758 55.000 0.00 0.00 0.00 3.58
99 100 0.243365 AGCGAGAGAGAGCAAGTGTG 59.757 55.000 0.00 0.00 35.48 3.82
100 101 0.525761 GAGCGAGAGAGAGCAAGTGT 59.474 55.000 0.00 0.00 35.48 3.55
101 102 0.179140 GGAGCGAGAGAGAGCAAGTG 60.179 60.000 0.00 0.00 35.48 3.16
102 103 0.323360 AGGAGCGAGAGAGAGCAAGT 60.323 55.000 0.00 0.00 35.48 3.16
103 104 0.101040 CAGGAGCGAGAGAGAGCAAG 59.899 60.000 0.00 0.00 35.48 4.01
104 105 1.943116 GCAGGAGCGAGAGAGAGCAA 61.943 60.000 0.00 0.00 35.48 3.91
105 106 2.413963 GCAGGAGCGAGAGAGAGCA 61.414 63.158 0.00 0.00 35.48 4.26
106 107 1.737355 ATGCAGGAGCGAGAGAGAGC 61.737 60.000 0.00 0.00 46.23 4.09
107 108 0.311790 GATGCAGGAGCGAGAGAGAG 59.688 60.000 0.00 0.00 46.23 3.20
108 109 0.106769 AGATGCAGGAGCGAGAGAGA 60.107 55.000 0.00 0.00 46.23 3.10
109 110 0.311790 GAGATGCAGGAGCGAGAGAG 59.688 60.000 0.00 0.00 46.23 3.20
110 111 0.394899 TGAGATGCAGGAGCGAGAGA 60.395 55.000 0.00 0.00 46.23 3.10
111 112 0.459078 TTGAGATGCAGGAGCGAGAG 59.541 55.000 0.00 0.00 46.23 3.20
112 113 0.459078 CTTGAGATGCAGGAGCGAGA 59.541 55.000 0.00 0.00 46.23 4.04
113 114 0.530211 CCTTGAGATGCAGGAGCGAG 60.530 60.000 0.00 0.00 46.23 5.03
114 115 0.972471 TCCTTGAGATGCAGGAGCGA 60.972 55.000 0.00 0.00 46.23 4.93
115 116 0.530211 CTCCTTGAGATGCAGGAGCG 60.530 60.000 4.64 0.00 46.23 5.03
116 117 3.383092 CTCCTTGAGATGCAGGAGC 57.617 57.895 4.64 0.00 41.02 4.70
118 119 0.829333 GAGCTCCTTGAGATGCAGGA 59.171 55.000 0.87 0.00 0.00 3.86
119 120 0.831966 AGAGCTCCTTGAGATGCAGG 59.168 55.000 10.93 0.00 0.00 4.85
120 121 1.536496 CGAGAGCTCCTTGAGATGCAG 60.536 57.143 10.93 0.00 0.00 4.41
121 122 0.459078 CGAGAGCTCCTTGAGATGCA 59.541 55.000 10.93 0.00 0.00 3.96
122 123 0.743688 TCGAGAGCTCCTTGAGATGC 59.256 55.000 10.93 0.00 31.69 3.91
123 124 3.731652 ATTCGAGAGCTCCTTGAGATG 57.268 47.619 10.93 0.00 36.68 2.90
124 125 3.740764 GCAATTCGAGAGCTCCTTGAGAT 60.741 47.826 10.93 0.00 36.68 2.75
125 126 2.417924 GCAATTCGAGAGCTCCTTGAGA 60.418 50.000 10.93 0.00 36.68 3.27
126 127 1.932511 GCAATTCGAGAGCTCCTTGAG 59.067 52.381 10.93 0.00 36.68 3.02
127 128 1.406069 GGCAATTCGAGAGCTCCTTGA 60.406 52.381 10.93 2.80 33.49 3.02
128 129 1.012841 GGCAATTCGAGAGCTCCTTG 58.987 55.000 10.93 7.99 0.00 3.61
129 130 0.460987 CGGCAATTCGAGAGCTCCTT 60.461 55.000 10.93 0.00 0.00 3.36
130 131 1.142748 CGGCAATTCGAGAGCTCCT 59.857 57.895 10.93 0.00 0.00 3.69
131 132 1.153549 ACGGCAATTCGAGAGCTCC 60.154 57.895 10.93 0.68 0.00 4.70
132 133 0.737715 ACACGGCAATTCGAGAGCTC 60.738 55.000 5.27 5.27 0.00 4.09
133 134 0.320771 AACACGGCAATTCGAGAGCT 60.321 50.000 0.00 0.00 0.00 4.09
134 135 0.517316 AAACACGGCAATTCGAGAGC 59.483 50.000 0.00 0.00 0.00 4.09
135 136 3.678072 TCTTAAACACGGCAATTCGAGAG 59.322 43.478 0.00 0.00 0.00 3.20
136 137 3.655486 TCTTAAACACGGCAATTCGAGA 58.345 40.909 0.00 0.00 0.00 4.04
137 138 3.725010 GCTCTTAAACACGGCAATTCGAG 60.725 47.826 0.00 0.00 0.00 4.04
138 139 2.158841 GCTCTTAAACACGGCAATTCGA 59.841 45.455 0.00 0.00 0.00 3.71
139 140 2.095969 TGCTCTTAAACACGGCAATTCG 60.096 45.455 0.00 0.00 0.00 3.34
140 141 3.552604 TGCTCTTAAACACGGCAATTC 57.447 42.857 0.00 0.00 0.00 2.17
141 142 3.119495 GGATGCTCTTAAACACGGCAATT 60.119 43.478 0.00 0.00 36.49 2.32
142 143 2.423538 GGATGCTCTTAAACACGGCAAT 59.576 45.455 0.00 0.00 36.49 3.56
143 144 1.810151 GGATGCTCTTAAACACGGCAA 59.190 47.619 0.00 0.00 36.49 4.52
144 145 1.448985 GGATGCTCTTAAACACGGCA 58.551 50.000 0.00 0.00 37.32 5.69
145 146 0.733150 GGGATGCTCTTAAACACGGC 59.267 55.000 0.00 0.00 0.00 5.68
146 147 1.737793 GTGGGATGCTCTTAAACACGG 59.262 52.381 0.00 0.00 0.00 4.94
147 148 1.393539 CGTGGGATGCTCTTAAACACG 59.606 52.381 0.00 0.00 43.01 4.49
148 149 2.415512 GTCGTGGGATGCTCTTAAACAC 59.584 50.000 0.00 0.00 0.00 3.32
149 150 2.037902 TGTCGTGGGATGCTCTTAAACA 59.962 45.455 0.00 0.00 0.00 2.83
150 151 2.695359 TGTCGTGGGATGCTCTTAAAC 58.305 47.619 0.00 0.00 0.00 2.01
151 152 3.410631 TTGTCGTGGGATGCTCTTAAA 57.589 42.857 0.00 0.00 0.00 1.52
152 153 3.627395 ATTGTCGTGGGATGCTCTTAA 57.373 42.857 0.00 0.00 0.00 1.85
153 154 3.531538 GAATTGTCGTGGGATGCTCTTA 58.468 45.455 0.00 0.00 0.00 2.10
154 155 2.359900 GAATTGTCGTGGGATGCTCTT 58.640 47.619 0.00 0.00 0.00 2.85
155 156 1.407437 GGAATTGTCGTGGGATGCTCT 60.407 52.381 0.00 0.00 0.00 4.09
156 157 1.017387 GGAATTGTCGTGGGATGCTC 58.983 55.000 0.00 0.00 0.00 4.26
157 158 0.327924 TGGAATTGTCGTGGGATGCT 59.672 50.000 0.00 0.00 0.00 3.79
158 159 0.734889 CTGGAATTGTCGTGGGATGC 59.265 55.000 0.00 0.00 0.00 3.91
159 160 1.382522 CCTGGAATTGTCGTGGGATG 58.617 55.000 0.00 0.00 0.00 3.51
160 161 0.394352 GCCTGGAATTGTCGTGGGAT 60.394 55.000 0.00 0.00 0.00 3.85
161 162 1.002624 GCCTGGAATTGTCGTGGGA 60.003 57.895 0.00 0.00 0.00 4.37
162 163 0.251916 TAGCCTGGAATTGTCGTGGG 59.748 55.000 0.00 0.00 0.00 4.61
163 164 1.942657 CATAGCCTGGAATTGTCGTGG 59.057 52.381 0.00 0.00 0.00 4.94
164 165 2.352651 CACATAGCCTGGAATTGTCGTG 59.647 50.000 0.00 0.00 0.00 4.35
165 166 2.027192 ACACATAGCCTGGAATTGTCGT 60.027 45.455 0.00 0.00 0.00 4.34
166 167 2.609459 GACACATAGCCTGGAATTGTCG 59.391 50.000 0.00 0.00 0.00 4.35
167 168 3.873952 GAGACACATAGCCTGGAATTGTC 59.126 47.826 0.00 2.20 33.57 3.18
168 169 3.264193 TGAGACACATAGCCTGGAATTGT 59.736 43.478 0.00 0.00 0.00 2.71
169 170 3.877559 TGAGACACATAGCCTGGAATTG 58.122 45.455 0.00 0.00 0.00 2.32
170 171 4.785346 ATGAGACACATAGCCTGGAATT 57.215 40.909 0.00 0.00 37.46 2.17
171 172 4.458397 CAATGAGACACATAGCCTGGAAT 58.542 43.478 0.00 0.00 38.38 3.01
172 173 3.877559 CAATGAGACACATAGCCTGGAA 58.122 45.455 0.00 0.00 38.38 3.53
173 174 2.420547 GCAATGAGACACATAGCCTGGA 60.421 50.000 0.00 0.00 38.38 3.86
174 175 1.945394 GCAATGAGACACATAGCCTGG 59.055 52.381 0.00 0.00 38.38 4.45
175 176 2.871022 GAGCAATGAGACACATAGCCTG 59.129 50.000 0.00 0.00 38.38 4.85
176 177 2.770802 AGAGCAATGAGACACATAGCCT 59.229 45.455 0.00 0.00 38.38 4.58
177 178 3.191078 AGAGCAATGAGACACATAGCC 57.809 47.619 0.00 0.00 38.38 3.93
178 179 3.311871 CCAAGAGCAATGAGACACATAGC 59.688 47.826 0.00 0.00 38.38 2.97
179 180 3.311871 GCCAAGAGCAATGAGACACATAG 59.688 47.826 0.00 0.00 42.97 2.23
180 181 3.273434 GCCAAGAGCAATGAGACACATA 58.727 45.455 0.00 0.00 42.97 2.29
181 182 2.089980 GCCAAGAGCAATGAGACACAT 58.910 47.619 0.00 0.00 42.97 3.21
182 183 1.527034 GCCAAGAGCAATGAGACACA 58.473 50.000 0.00 0.00 42.97 3.72
183 184 0.445436 CGCCAAGAGCAATGAGACAC 59.555 55.000 0.00 0.00 44.04 3.67
184 185 0.674581 CCGCCAAGAGCAATGAGACA 60.675 55.000 0.00 0.00 44.04 3.41
185 186 0.674895 ACCGCCAAGAGCAATGAGAC 60.675 55.000 0.00 0.00 44.04 3.36
186 187 0.391661 GACCGCCAAGAGCAATGAGA 60.392 55.000 0.00 0.00 44.04 3.27
187 188 1.372087 GGACCGCCAAGAGCAATGAG 61.372 60.000 0.00 0.00 44.04 2.90
188 189 1.377202 GGACCGCCAAGAGCAATGA 60.377 57.895 0.00 0.00 44.04 2.57
189 190 1.372087 GAGGACCGCCAAGAGCAATG 61.372 60.000 0.00 0.00 44.04 2.82
190 191 1.078143 GAGGACCGCCAAGAGCAAT 60.078 57.895 0.00 0.00 44.04 3.56
191 192 2.217038 AGAGGACCGCCAAGAGCAA 61.217 57.895 0.00 0.00 44.04 3.91
192 193 2.604686 AGAGGACCGCCAAGAGCA 60.605 61.111 0.00 0.00 44.04 4.26
193 194 1.965754 ATCAGAGGACCGCCAAGAGC 61.966 60.000 0.00 0.00 36.29 4.09
194 195 0.103937 GATCAGAGGACCGCCAAGAG 59.896 60.000 0.00 0.00 36.29 2.85
195 196 1.330655 GGATCAGAGGACCGCCAAGA 61.331 60.000 0.00 0.00 36.29 3.02
196 197 1.144936 GGATCAGAGGACCGCCAAG 59.855 63.158 0.00 0.00 36.29 3.61
197 198 1.198094 TTGGATCAGAGGACCGCCAA 61.198 55.000 0.00 0.00 36.29 4.52
198 199 1.612146 TTGGATCAGAGGACCGCCA 60.612 57.895 0.00 0.00 36.29 5.69
199 200 1.153349 GTTGGATCAGAGGACCGCC 60.153 63.158 0.00 0.00 0.00 6.13
200 201 0.179097 GAGTTGGATCAGAGGACCGC 60.179 60.000 0.00 0.00 0.00 5.68
201 202 0.461961 GGAGTTGGATCAGAGGACCG 59.538 60.000 0.00 0.00 0.00 4.79
202 203 1.208293 GTGGAGTTGGATCAGAGGACC 59.792 57.143 0.00 0.00 0.00 4.46
203 204 1.208293 GGTGGAGTTGGATCAGAGGAC 59.792 57.143 0.00 0.00 0.00 3.85
204 205 1.203300 TGGTGGAGTTGGATCAGAGGA 60.203 52.381 0.00 0.00 0.00 3.71
205 206 1.279496 TGGTGGAGTTGGATCAGAGG 58.721 55.000 0.00 0.00 0.00 3.69
206 207 2.568956 TCTTGGTGGAGTTGGATCAGAG 59.431 50.000 0.00 0.00 0.00 3.35
207 208 2.303022 GTCTTGGTGGAGTTGGATCAGA 59.697 50.000 0.00 0.00 0.00 3.27
208 209 2.038952 TGTCTTGGTGGAGTTGGATCAG 59.961 50.000 0.00 0.00 0.00 2.90
209 210 2.054021 TGTCTTGGTGGAGTTGGATCA 58.946 47.619 0.00 0.00 0.00 2.92
210 211 2.859165 TGTCTTGGTGGAGTTGGATC 57.141 50.000 0.00 0.00 0.00 3.36
211 212 3.593442 TTTGTCTTGGTGGAGTTGGAT 57.407 42.857 0.00 0.00 0.00 3.41
212 213 3.593442 ATTTGTCTTGGTGGAGTTGGA 57.407 42.857 0.00 0.00 0.00 3.53
213 214 3.799917 GCAATTTGTCTTGGTGGAGTTGG 60.800 47.826 0.00 0.00 0.00 3.77
214 215 3.383761 GCAATTTGTCTTGGTGGAGTTG 58.616 45.455 0.00 0.00 0.00 3.16
215 216 2.365293 GGCAATTTGTCTTGGTGGAGTT 59.635 45.455 0.00 0.00 0.00 3.01
216 217 1.963515 GGCAATTTGTCTTGGTGGAGT 59.036 47.619 0.00 0.00 0.00 3.85
217 218 1.962807 TGGCAATTTGTCTTGGTGGAG 59.037 47.619 2.24 0.00 0.00 3.86
218 219 1.686052 GTGGCAATTTGTCTTGGTGGA 59.314 47.619 2.24 0.00 0.00 4.02
219 220 1.411977 TGTGGCAATTTGTCTTGGTGG 59.588 47.619 2.24 0.00 0.00 4.61
220 221 2.865551 GTTGTGGCAATTTGTCTTGGTG 59.134 45.455 2.24 0.00 0.00 4.17
221 222 2.499289 TGTTGTGGCAATTTGTCTTGGT 59.501 40.909 2.24 0.00 0.00 3.67
222 223 2.865551 GTGTTGTGGCAATTTGTCTTGG 59.134 45.455 2.24 0.00 0.00 3.61
223 224 2.865551 GGTGTTGTGGCAATTTGTCTTG 59.134 45.455 2.24 0.00 0.00 3.02
224 225 2.765699 AGGTGTTGTGGCAATTTGTCTT 59.234 40.909 2.24 0.00 0.00 3.01
225 226 2.387757 AGGTGTTGTGGCAATTTGTCT 58.612 42.857 2.24 0.00 0.00 3.41
226 227 2.888834 AGGTGTTGTGGCAATTTGTC 57.111 45.000 0.00 0.00 0.00 3.18
227 228 4.081420 TGTTTAGGTGTTGTGGCAATTTGT 60.081 37.500 0.00 0.00 0.00 2.83
228 229 4.437239 TGTTTAGGTGTTGTGGCAATTTG 58.563 39.130 0.00 0.00 0.00 2.32
229 230 4.744795 TGTTTAGGTGTTGTGGCAATTT 57.255 36.364 0.00 0.00 0.00 1.82
230 231 4.744795 TTGTTTAGGTGTTGTGGCAATT 57.255 36.364 0.00 0.00 0.00 2.32
231 232 4.953940 ATTGTTTAGGTGTTGTGGCAAT 57.046 36.364 0.00 0.00 0.00 3.56
232 233 4.160439 TGAATTGTTTAGGTGTTGTGGCAA 59.840 37.500 0.00 0.00 0.00 4.52
233 234 3.701542 TGAATTGTTTAGGTGTTGTGGCA 59.298 39.130 0.00 0.00 0.00 4.92
234 235 4.048504 GTGAATTGTTTAGGTGTTGTGGC 58.951 43.478 0.00 0.00 0.00 5.01
235 236 4.616953 GGTGAATTGTTTAGGTGTTGTGG 58.383 43.478 0.00 0.00 0.00 4.17
236 237 4.286910 CGGTGAATTGTTTAGGTGTTGTG 58.713 43.478 0.00 0.00 0.00 3.33
237 238 3.243267 GCGGTGAATTGTTTAGGTGTTGT 60.243 43.478 0.00 0.00 0.00 3.32
238 239 3.243234 TGCGGTGAATTGTTTAGGTGTTG 60.243 43.478 0.00 0.00 0.00 3.33
239 240 2.952978 TGCGGTGAATTGTTTAGGTGTT 59.047 40.909 0.00 0.00 0.00 3.32
240 241 2.577700 TGCGGTGAATTGTTTAGGTGT 58.422 42.857 0.00 0.00 0.00 4.16
241 242 3.440173 AGATGCGGTGAATTGTTTAGGTG 59.560 43.478 0.00 0.00 0.00 4.00
242 243 3.686016 AGATGCGGTGAATTGTTTAGGT 58.314 40.909 0.00 0.00 0.00 3.08
243 244 5.527214 TCATAGATGCGGTGAATTGTTTAGG 59.473 40.000 0.00 0.00 0.00 2.69
244 245 6.603237 TCATAGATGCGGTGAATTGTTTAG 57.397 37.500 0.00 0.00 0.00 1.85
245 246 6.458206 GCTTCATAGATGCGGTGAATTGTTTA 60.458 38.462 0.00 0.00 32.05 2.01
246 247 5.677091 GCTTCATAGATGCGGTGAATTGTTT 60.677 40.000 0.00 0.00 32.05 2.83
247 248 4.201950 GCTTCATAGATGCGGTGAATTGTT 60.202 41.667 0.00 0.00 32.05 2.83
248 249 3.313526 GCTTCATAGATGCGGTGAATTGT 59.686 43.478 0.00 0.00 32.05 2.71
249 250 3.562973 AGCTTCATAGATGCGGTGAATTG 59.437 43.478 0.00 0.00 37.70 2.32
250 251 3.812053 GAGCTTCATAGATGCGGTGAATT 59.188 43.478 0.00 0.00 37.70 2.17
251 252 3.070734 AGAGCTTCATAGATGCGGTGAAT 59.929 43.478 0.00 0.00 37.70 2.57
252 253 2.432146 AGAGCTTCATAGATGCGGTGAA 59.568 45.455 0.00 0.00 37.70 3.18
253 254 2.034878 AGAGCTTCATAGATGCGGTGA 58.965 47.619 0.00 0.00 37.70 4.02
254 255 2.522836 AGAGCTTCATAGATGCGGTG 57.477 50.000 0.00 0.00 37.70 4.94
255 256 3.491342 TCTAGAGCTTCATAGATGCGGT 58.509 45.455 0.00 0.00 37.70 5.68
256 257 4.095410 CTCTAGAGCTTCATAGATGCGG 57.905 50.000 6.86 0.00 37.70 5.69
270 271 1.439644 GGGAAGTGGCGCTCTAGAG 59.560 63.158 15.85 15.85 0.00 2.43
271 272 2.058595 GGGGAAGTGGCGCTCTAGA 61.059 63.158 7.64 0.00 0.00 2.43
272 273 2.501610 GGGGAAGTGGCGCTCTAG 59.498 66.667 7.64 0.00 0.00 2.43
273 274 3.458163 CGGGGAAGTGGCGCTCTA 61.458 66.667 7.64 0.00 0.00 2.43
278 279 2.521958 ATTCTCACGGGGAAGTGGCG 62.522 60.000 0.00 0.00 42.10 5.69
279 280 0.744771 GATTCTCACGGGGAAGTGGC 60.745 60.000 0.00 0.00 42.10 5.01
280 281 0.905357 AGATTCTCACGGGGAAGTGG 59.095 55.000 0.00 0.00 42.10 4.00
281 282 1.550524 TGAGATTCTCACGGGGAAGTG 59.449 52.381 12.38 0.00 43.11 3.16
282 283 1.827969 CTGAGATTCTCACGGGGAAGT 59.172 52.381 12.38 0.00 35.39 3.01
283 284 2.103373 TCTGAGATTCTCACGGGGAAG 58.897 52.381 12.38 1.78 35.39 3.46
284 285 2.231716 TCTGAGATTCTCACGGGGAA 57.768 50.000 12.38 0.00 35.39 3.97
285 286 2.231716 TTCTGAGATTCTCACGGGGA 57.768 50.000 12.38 5.84 35.39 4.81
286 287 3.003480 GTTTTCTGAGATTCTCACGGGG 58.997 50.000 12.38 3.52 35.39 5.73
287 288 3.003480 GGTTTTCTGAGATTCTCACGGG 58.997 50.000 12.38 3.87 35.39 5.28
288 289 3.664107 TGGTTTTCTGAGATTCTCACGG 58.336 45.455 12.38 4.57 35.39 4.94
289 290 4.436584 GCATGGTTTTCTGAGATTCTCACG 60.437 45.833 12.38 9.04 35.39 4.35
290 291 4.456911 TGCATGGTTTTCTGAGATTCTCAC 59.543 41.667 12.38 2.77 35.39 3.51
291 292 4.456911 GTGCATGGTTTTCTGAGATTCTCA 59.543 41.667 15.39 15.39 38.25 3.27
292 293 4.436584 CGTGCATGGTTTTCTGAGATTCTC 60.437 45.833 6.73 6.73 0.00 2.87
293 294 3.438087 CGTGCATGGTTTTCTGAGATTCT 59.562 43.478 0.00 0.00 0.00 2.40
294 295 3.426695 CCGTGCATGGTTTTCTGAGATTC 60.427 47.826 17.42 0.00 0.00 2.52
295 296 2.489329 CCGTGCATGGTTTTCTGAGATT 59.511 45.455 17.42 0.00 0.00 2.40
296 297 2.086869 CCGTGCATGGTTTTCTGAGAT 58.913 47.619 17.42 0.00 0.00 2.75
297 298 1.202758 ACCGTGCATGGTTTTCTGAGA 60.203 47.619 25.38 0.00 39.99 3.27
298 299 1.238439 ACCGTGCATGGTTTTCTGAG 58.762 50.000 25.38 0.00 39.99 3.35
299 300 2.552599 TACCGTGCATGGTTTTCTGA 57.447 45.000 34.54 13.90 43.56 3.27
300 301 3.135414 CATACCGTGCATGGTTTTCTG 57.865 47.619 34.54 21.54 43.56 3.02
312 313 2.436087 GATCGGAGGGGCATACCGTG 62.436 65.000 13.22 0.00 45.71 4.94
313 314 2.122989 ATCGGAGGGGCATACCGT 60.123 61.111 13.22 0.00 45.71 4.83
314 315 1.754380 TTGATCGGAGGGGCATACCG 61.754 60.000 8.70 8.70 46.71 4.02
315 316 0.472471 TTTGATCGGAGGGGCATACC 59.528 55.000 0.00 0.00 39.11 2.73
316 317 1.947456 GTTTTGATCGGAGGGGCATAC 59.053 52.381 0.00 0.00 0.00 2.39
317 318 1.133915 GGTTTTGATCGGAGGGGCATA 60.134 52.381 0.00 0.00 0.00 3.14
318 319 0.395724 GGTTTTGATCGGAGGGGCAT 60.396 55.000 0.00 0.00 0.00 4.40
319 320 1.001393 GGTTTTGATCGGAGGGGCA 60.001 57.895 0.00 0.00 0.00 5.36
320 321 2.112815 CGGTTTTGATCGGAGGGGC 61.113 63.158 0.00 0.00 0.00 5.80
321 322 4.218722 CGGTTTTGATCGGAGGGG 57.781 61.111 0.00 0.00 0.00 4.79
327 328 1.927174 CTACTCAGCCGGTTTTGATCG 59.073 52.381 1.90 0.00 0.00 3.69
328 329 3.119101 TCTCTACTCAGCCGGTTTTGATC 60.119 47.826 1.90 0.00 0.00 2.92
329 330 2.832129 TCTCTACTCAGCCGGTTTTGAT 59.168 45.455 1.90 0.00 0.00 2.57
330 331 2.244695 TCTCTACTCAGCCGGTTTTGA 58.755 47.619 1.90 4.23 0.00 2.69
331 332 2.737252 GTTCTCTACTCAGCCGGTTTTG 59.263 50.000 1.90 0.00 0.00 2.44
332 333 2.633481 AGTTCTCTACTCAGCCGGTTTT 59.367 45.455 1.90 0.00 28.23 2.43
333 334 2.249139 AGTTCTCTACTCAGCCGGTTT 58.751 47.619 1.90 0.00 28.23 3.27
334 335 1.926108 AGTTCTCTACTCAGCCGGTT 58.074 50.000 1.90 0.00 28.23 4.44
335 336 1.819903 GAAGTTCTCTACTCAGCCGGT 59.180 52.381 1.90 0.00 35.54 5.28
336 337 2.096248 AGAAGTTCTCTACTCAGCCGG 58.904 52.381 0.00 0.00 35.54 6.13
337 338 3.414549 GAGAAGTTCTCTACTCAGCCG 57.585 52.381 23.12 0.00 40.30 5.52
347 348 9.979578 ACATATGAATCATGTAGAGAAGTTCTC 57.020 33.333 22.97 22.97 43.70 2.87
348 349 9.979578 GACATATGAATCATGTAGAGAAGTTCT 57.020 33.333 10.38 4.68 36.76 3.01
349 350 8.910666 CGACATATGAATCATGTAGAGAAGTTC 58.089 37.037 10.38 0.00 36.76 3.01
350 351 7.383572 GCGACATATGAATCATGTAGAGAAGTT 59.616 37.037 10.38 0.00 36.76 2.66
354 355 6.207417 TGAGCGACATATGAATCATGTAGAGA 59.793 38.462 10.38 0.00 36.76 3.10
469 470 1.133699 CATGGGTCCATATGCCAGTGT 60.134 52.381 1.72 0.00 34.91 3.55
489 490 5.095490 GCCATGTTAGCACACATTAGAAAC 58.905 41.667 0.00 0.00 35.03 2.78
505 506 0.700564 ACCCAGACAGATGCCATGTT 59.299 50.000 0.00 0.00 0.00 2.71
526 527 2.517875 GTCTCCCGCTACGCCCTA 60.518 66.667 0.00 0.00 0.00 3.53
552 553 5.784177 ACGATGATACACTCCAATATGGTC 58.216 41.667 0.00 0.00 39.03 4.02
567 568 9.350951 CCACTATGGTCCTTATATACGATGATA 57.649 37.037 0.00 0.00 31.35 2.15
595 596 5.063180 TGGTCATCAAAGTCATGAAATGC 57.937 39.130 0.00 0.00 46.21 3.56
603 604 3.401033 ACACGATGGTCATCAAAGTCA 57.599 42.857 11.00 0.00 37.69 3.41
626 627 6.932356 ACAATTCTTATACTCTCCGACGTA 57.068 37.500 0.00 0.00 0.00 3.57
646 647 7.441157 CCAAATCCGAGATAATTACAGCTACAA 59.559 37.037 0.00 0.00 0.00 2.41
661 662 1.678728 GCACATGTCCCAAATCCGAGA 60.679 52.381 0.00 0.00 0.00 4.04
725 726 7.507733 TCCTGTATCCTACTCGTTTATCTTC 57.492 40.000 0.00 0.00 0.00 2.87
745 746 5.571784 TTCAGAAAGCTTTGCATATCCTG 57.428 39.130 18.30 15.03 0.00 3.86
771 772 0.103208 ATTCTGCCGCCTCTTCTACG 59.897 55.000 0.00 0.00 0.00 3.51
772 773 2.205911 GAATTCTGCCGCCTCTTCTAC 58.794 52.381 0.00 0.00 0.00 2.59
783 1578 3.063452 TCGAGTAAATTGCGAATTCTGCC 59.937 43.478 16.10 1.44 0.00 4.85
1014 1811 0.968405 ACGCCATGGCAGACAAATTT 59.032 45.000 34.93 8.41 42.06 1.82
1066 1863 1.303317 GGTTGTGGCCTCGGACAAT 60.303 57.895 9.37 0.00 34.69 2.71
1169 1976 1.204941 CTACGTCCAAGGACTGGGAAG 59.795 57.143 16.57 7.08 46.44 3.46
1175 1984 0.971447 GGCTCCTACGTCCAAGGACT 60.971 60.000 16.57 6.99 42.54 3.85
1176 1985 1.255667 TGGCTCCTACGTCCAAGGAC 61.256 60.000 9.22 9.22 38.24 3.85
1177 1986 0.325296 ATGGCTCCTACGTCCAAGGA 60.325 55.000 5.46 5.46 40.92 3.36
1179 1988 0.537188 ACATGGCTCCTACGTCCAAG 59.463 55.000 0.00 0.00 33.04 3.61
1181 1990 0.902984 ACACATGGCTCCTACGTCCA 60.903 55.000 0.00 0.00 0.00 4.02
1182 1991 0.249398 AACACATGGCTCCTACGTCC 59.751 55.000 0.00 0.00 0.00 4.79
1279 2110 2.041922 TGACCCCGATCCCCTGAG 60.042 66.667 0.00 0.00 0.00 3.35
1418 2256 3.577919 AGGTATTAATCGGTGCCTCTCT 58.422 45.455 0.00 0.00 0.00 3.10
1460 2298 6.655003 TGGGAACTAGTCTGATTCAAATCAAC 59.345 38.462 6.85 7.92 44.20 3.18
1518 2364 4.347453 CTGTTTGCACGCCAGGCC 62.347 66.667 5.63 0.00 0.00 5.19
1519 2365 4.347453 CCTGTTTGCACGCCAGGC 62.347 66.667 11.40 0.00 39.36 4.85
1660 2506 5.562298 TTAGGTTTTGGTACTCTGCTCTT 57.438 39.130 0.00 0.00 0.00 2.85
1662 2508 5.763698 ACTTTTAGGTTTTGGTACTCTGCTC 59.236 40.000 0.00 0.00 0.00 4.26
1672 2518 6.215495 TGAAGGTGAACTTTTAGGTTTTGG 57.785 37.500 0.00 0.00 40.21 3.28
1693 2539 9.720667 GACATAACATCATGATTTTTCGATTGA 57.279 29.630 12.12 0.00 0.00 2.57
1694 2540 8.961092 GGACATAACATCATGATTTTTCGATTG 58.039 33.333 12.12 0.00 0.00 2.67
1785 2894 6.158023 TCCACGAGGAGATAAAATAGAACC 57.842 41.667 0.00 0.00 39.61 3.62
1861 2974 5.708697 TGAACTGAAAATCTGACATCATGCT 59.291 36.000 0.00 0.00 0.00 3.79
1993 3118 7.928103 AATGAAATTAGCAGTAATGCTGAGAG 58.072 34.615 26.91 0.00 45.81 3.20
2251 3393 9.504708 AAAGAAAATTCCATGCAATCATTGTTA 57.495 25.926 0.00 0.00 0.00 2.41
2254 3453 8.293867 ACAAAAGAAAATTCCATGCAATCATTG 58.706 29.630 0.00 0.00 0.00 2.82
2266 3466 6.660887 TGTTTCAGCACAAAAGAAAATTCC 57.339 33.333 0.00 0.00 33.54 3.01
2277 3477 6.222389 CCCTATTTTTCATGTTTCAGCACAA 58.778 36.000 0.00 0.00 0.00 3.33
2346 3552 9.003658 CCAGGTGGATATATAAGTGTTCATTTC 57.996 37.037 0.00 0.00 37.39 2.17
2403 3614 2.744202 GTCATCCGCTGTGAATTTGTCT 59.256 45.455 0.00 0.00 0.00 3.41
2448 3659 5.009610 TGCAGCGTCATAGATATCAGTTACA 59.990 40.000 5.32 0.00 0.00 2.41
2474 3685 0.957362 GGCATGCTTTAGATCCAGCC 59.043 55.000 18.92 0.00 34.91 4.85
2548 3759 2.869636 ACGATACGTGGCTCTCACT 58.130 52.632 0.00 0.00 43.94 3.41
2678 3892 4.658071 CAATAACATTCAGTTGGGCGTAC 58.342 43.478 0.00 0.00 41.50 3.67
2680 3894 2.094752 GCAATAACATTCAGTTGGGCGT 60.095 45.455 0.00 0.00 41.50 5.68
2686 3900 4.588528 ACCAGGTTGCAATAACATTCAGTT 59.411 37.500 0.59 0.00 44.27 3.16
2783 4001 2.412870 GCACACACAGCACATACACTA 58.587 47.619 0.00 0.00 0.00 2.74
2831 4053 7.446769 TCACAACCACAGTACTACAAATACAT 58.553 34.615 0.00 0.00 0.00 2.29
2861 4083 8.077991 TCTCTTATTTGTTCAACTTCAAGCATG 58.922 33.333 0.00 0.00 0.00 4.06
2862 4084 8.078596 GTCTCTTATTTGTTCAACTTCAAGCAT 58.921 33.333 0.00 0.00 0.00 3.79
2929 4157 5.793817 ACCACCAATCTTTGAATTTAAGCC 58.206 37.500 0.00 0.00 0.00 4.35
2981 4214 2.545742 CGAGCCCATCATACGATGTTGA 60.546 50.000 0.00 0.00 46.54 3.18
2982 4215 1.794701 CGAGCCCATCATACGATGTTG 59.205 52.381 0.00 0.00 46.54 3.33
2983 4216 1.873903 GCGAGCCCATCATACGATGTT 60.874 52.381 0.00 0.00 46.54 2.71
3021 4395 3.727673 CGGGTGAACGCTATCAATTTGTG 60.728 47.826 0.00 0.00 0.00 3.33
3022 4396 2.418628 CGGGTGAACGCTATCAATTTGT 59.581 45.455 0.00 0.00 0.00 2.83
3023 4397 2.223249 CCGGGTGAACGCTATCAATTTG 60.223 50.000 0.00 0.00 0.00 2.32
3025 4399 1.663695 CCGGGTGAACGCTATCAATT 58.336 50.000 0.00 0.00 0.00 2.32
3027 4401 1.448893 GCCGGGTGAACGCTATCAA 60.449 57.895 2.18 0.00 0.00 2.57
3028 4402 2.185867 GCCGGGTGAACGCTATCA 59.814 61.111 2.18 0.00 0.00 2.15
3029 4403 1.883084 CAGCCGGGTGAACGCTATC 60.883 63.158 29.63 0.00 0.00 2.08
3031 4405 2.292794 GATCAGCCGGGTGAACGCTA 62.293 60.000 37.45 16.51 0.00 4.26
3112 4524 0.731417 TAACAGAGCCGAGTACGAGC 59.269 55.000 0.00 0.00 42.66 5.03
3176 4588 6.038382 TGGTATAGAGAGAGAAAGTTACGCAG 59.962 42.308 0.00 0.00 0.00 5.18
3204 4616 1.002069 ACATCCCCCTCATTTGCAGA 58.998 50.000 0.00 0.00 0.00 4.26
3214 4626 1.687612 CAGCTCACAACATCCCCCT 59.312 57.895 0.00 0.00 0.00 4.79
3237 4651 2.186903 CGTAGCCAGCCGTCCATT 59.813 61.111 0.00 0.00 0.00 3.16
3294 4791 0.462225 TTTCAGAAACGCCGGTGACA 60.462 50.000 24.59 0.00 0.00 3.58
3318 4815 1.525995 ACACCTTCGCAACACAGGG 60.526 57.895 0.00 0.00 31.19 4.45
3355 4869 3.236816 CATGACGGTGAAGTTGCAATTC 58.763 45.455 0.59 8.39 0.00 2.17
3391 4905 3.674997 GCAGACCCTTCTCAACAACATA 58.325 45.455 0.00 0.00 0.00 2.29
3398 4912 1.188219 AGCTCGCAGACCCTTCTCAA 61.188 55.000 0.00 0.00 0.00 3.02
3496 5010 5.008613 ACACATCACGAAGTTGCAATTTACT 59.991 36.000 7.22 0.00 41.61 2.24
3532 5047 5.786401 ATTCGTCTAGCTTCACAACATTC 57.214 39.130 0.00 0.00 0.00 2.67
3555 5070 1.752310 CAATGGCCCACGGTGCATA 60.752 57.895 0.00 0.00 0.00 3.14
3562 5077 4.114997 GCGGTTCAATGGCCCACG 62.115 66.667 0.00 0.00 0.00 4.94
3574 5089 0.532862 CCATCAGATAAGCCGCGGTT 60.533 55.000 28.70 20.13 0.00 4.44
3576 5091 0.668706 CTCCATCAGATAAGCCGCGG 60.669 60.000 24.05 24.05 0.00 6.46
3584 5099 2.333069 CCTTGCCTCCTCCATCAGATA 58.667 52.381 0.00 0.00 0.00 1.98
3593 5108 1.141858 CAGTTATCCCCTTGCCTCCTC 59.858 57.143 0.00 0.00 0.00 3.71
3594 5109 1.216990 CAGTTATCCCCTTGCCTCCT 58.783 55.000 0.00 0.00 0.00 3.69
3643 5161 9.557061 GTTCTAGTAGATTTTATTAGTTGGGGG 57.443 37.037 0.00 0.00 0.00 5.40
3743 5261 8.882415 AATATGCCTGATTCAAATTTCATCAC 57.118 30.769 5.73 0.42 0.00 3.06
3828 5347 7.441157 GTCCTTCCAACGATAATGAACATCATA 59.559 37.037 0.00 0.00 35.76 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.