Multiple sequence alignment - TraesCS2A01G229000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G229000 chr2A 100.000 4755 0 0 1 4755 256206400 256211154 0.000000e+00 8781.0
1 TraesCS2A01G229000 chr2A 90.796 967 56 12 3 965 353948775 353949712 0.000000e+00 1262.0
2 TraesCS2A01G229000 chr2A 93.293 164 10 1 2793 2955 617759887 617759724 1.710000e-59 241.0
3 TraesCS2A01G229000 chr2D 90.637 1837 91 20 952 2748 570411606 570409811 0.000000e+00 2364.0
4 TraesCS2A01G229000 chr2D 88.616 896 70 19 34 921 570412477 570411606 0.000000e+00 1061.0
5 TraesCS2A01G229000 chr2D 82.659 173 25 4 3854 4022 227087039 227086868 1.070000e-31 148.0
6 TraesCS2A01G229000 chr2D 98.039 51 1 0 4705 4755 166160771 166160821 6.550000e-14 89.8
7 TraesCS2A01G229000 chr5A 96.941 1177 18 4 1620 2780 638286691 638287865 0.000000e+00 1958.0
8 TraesCS2A01G229000 chr5A 88.827 1253 98 22 37 1277 299488356 299487134 0.000000e+00 1500.0
9 TraesCS2A01G229000 chr5A 98.833 771 8 1 3 772 638285246 638286016 0.000000e+00 1373.0
10 TraesCS2A01G229000 chr5A 92.440 873 41 6 96 964 287633747 287632896 0.000000e+00 1223.0
11 TraesCS2A01G229000 chr5A 92.619 840 46 13 1253 2087 299487086 299486258 0.000000e+00 1194.0
12 TraesCS2A01G229000 chr5A 91.436 724 32 17 2071 2778 299486232 299485523 0.000000e+00 966.0
13 TraesCS2A01G229000 chr5A 93.912 657 3 3 993 1633 638286025 638286660 0.000000e+00 957.0
14 TraesCS2A01G229000 chr5A 81.998 961 117 25 1838 2780 648278325 648277403 0.000000e+00 765.0
15 TraesCS2A01G229000 chr5A 82.090 268 35 9 3591 3853 81187032 81186773 2.880000e-52 217.0
16 TraesCS2A01G229000 chr5A 91.429 70 6 0 4027 4096 45932012 45932081 3.920000e-16 97.1
17 TraesCS2A01G229000 chr7A 91.323 1383 78 24 1253 2616 498135401 498134042 0.000000e+00 1851.0
18 TraesCS2A01G229000 chr7A 88.006 1259 110 20 31 1277 498136693 498135464 0.000000e+00 1450.0
19 TraesCS2A01G229000 chr7A 83.217 858 93 25 1955 2780 90449181 90448343 0.000000e+00 739.0
20 TraesCS2A01G229000 chr7A 93.293 164 9 2 2793 2954 707996268 707996105 1.710000e-59 241.0
21 TraesCS2A01G229000 chr7A 93.252 163 6 3 2793 2952 444984042 444983882 7.960000e-58 235.0
22 TraesCS2A01G229000 chr7A 93.125 160 11 0 2793 2952 652469912 652470071 7.960000e-58 235.0
23 TraesCS2A01G229000 chr7A 93.210 162 8 2 2793 2951 730830696 730830857 7.960000e-58 235.0
24 TraesCS2A01G229000 chr7A 89.503 181 16 3 1208 1388 586159620 586159443 4.790000e-55 226.0
25 TraesCS2A01G229000 chr7A 89.286 56 5 1 3854 3909 547456883 547456937 8.540000e-08 69.4
26 TraesCS2A01G229000 chr7A 94.872 39 2 0 3515 3553 459179000 459178962 1.430000e-05 62.1
27 TraesCS2A01G229000 chr7A 92.105 38 1 1 3513 3550 613637351 613637386 9.000000e-03 52.8
28 TraesCS2A01G229000 chr4A 89.118 1259 97 21 31 1277 104104252 104103022 0.000000e+00 1530.0
29 TraesCS2A01G229000 chr4A 91.591 880 48 11 90 964 374547963 374548821 0.000000e+00 1192.0
30 TraesCS2A01G229000 chr4A 92.253 839 50 9 1253 2087 104102959 104102132 0.000000e+00 1175.0
31 TraesCS2A01G229000 chr4A 88.049 728 31 18 2071 2780 104102088 104101399 0.000000e+00 811.0
32 TraesCS2A01G229000 chr4A 81.623 653 82 22 832 1484 372319055 372318441 1.530000e-139 507.0
33 TraesCS2A01G229000 chr4A 84.314 153 19 4 2971 3119 574786397 574786548 1.380000e-30 145.0
34 TraesCS2A01G229000 chr4A 94.595 37 2 0 3517 3553 410391019 410390983 1.850000e-04 58.4
35 TraesCS2A01G229000 chr6A 88.613 966 61 13 3 964 141410497 141411417 0.000000e+00 1129.0
36 TraesCS2A01G229000 chr6A 96.721 61 2 0 4025 4085 190739608 190739668 8.420000e-18 102.0
37 TraesCS2A01G229000 chr5D 83.766 1078 117 24 1718 2777 551066997 551068034 0.000000e+00 968.0
38 TraesCS2A01G229000 chr5D 83.469 859 90 25 1955 2781 322773636 322772798 0.000000e+00 752.0
39 TraesCS2A01G229000 chr5D 82.510 263 35 7 3591 3849 87807012 87806757 2.230000e-53 220.0
40 TraesCS2A01G229000 chr5D 90.517 116 8 3 3917 4031 379575613 379575726 2.960000e-32 150.0
41 TraesCS2A01G229000 chr5D 93.137 102 6 1 3923 4023 540237960 540237859 1.070000e-31 148.0
42 TraesCS2A01G229000 chr5D 92.754 69 4 1 4021 4088 198955005 198955073 1.090000e-16 99.0
43 TraesCS2A01G229000 chr5D 92.308 39 2 1 3512 3550 492272110 492272147 2.000000e-03 54.7
44 TraesCS2A01G229000 chr3D 83.848 1003 113 29 1792 2780 560649940 560648973 0.000000e+00 909.0
45 TraesCS2A01G229000 chr3D 86.755 302 31 8 792 1090 80635454 80635159 1.280000e-85 327.0
46 TraesCS2A01G229000 chr3D 92.638 163 10 2 2793 2955 475555193 475555033 2.860000e-57 233.0
47 TraesCS2A01G229000 chr3D 91.667 108 8 1 3923 4030 603946158 603946264 1.070000e-31 148.0
48 TraesCS2A01G229000 chr3D 100.000 51 0 0 4705 4755 275618499 275618549 1.410000e-15 95.3
49 TraesCS2A01G229000 chr3D 98.039 51 1 0 4705 4755 141361690 141361740 6.550000e-14 89.8
50 TraesCS2A01G229000 chr7B 82.424 1081 131 27 1718 2780 442334604 442333565 0.000000e+00 889.0
51 TraesCS2A01G229000 chr7B 96.429 112 4 0 3 114 23999113 23999002 8.130000e-43 185.0
52 TraesCS2A01G229000 chr7B 96.429 112 4 0 3 114 23999496 23999385 8.130000e-43 185.0
53 TraesCS2A01G229000 chr7B 93.137 102 7 0 3921 4022 217312364 217312263 2.960000e-32 150.0
54 TraesCS2A01G229000 chr7B 97.143 35 1 0 3516 3550 198551059 198551093 5.140000e-05 60.2
55 TraesCS2A01G229000 chr6D 89.000 600 52 5 4083 4680 450012396 450012983 0.000000e+00 730.0
56 TraesCS2A01G229000 chr6D 91.909 309 21 2 3548 3855 450012091 450012396 3.400000e-116 429.0
57 TraesCS2A01G229000 chr6D 89.691 291 22 5 2949 3235 450011612 450011898 9.720000e-97 364.0
58 TraesCS2A01G229000 chr6D 94.118 68 3 1 4021 4088 402128415 402128481 8.420000e-18 102.0
59 TraesCS2A01G229000 chr6D 94.030 67 2 2 4025 4090 402128376 402128311 3.030000e-17 100.0
60 TraesCS2A01G229000 chr6D 98.039 51 1 0 4705 4755 291677846 291677896 6.550000e-14 89.8
61 TraesCS2A01G229000 chr5B 82.927 861 87 28 1959 2781 374391633 374390795 0.000000e+00 721.0
62 TraesCS2A01G229000 chr5B 82.397 267 36 7 3591 3853 93676702 93676443 6.190000e-54 222.0
63 TraesCS2A01G229000 chr5B 83.663 202 26 3 1961 2161 519741480 519741675 2.920000e-42 183.0
64 TraesCS2A01G229000 chr5B 97.222 36 1 0 3515 3550 297034324 297034359 1.430000e-05 62.1
65 TraesCS2A01G229000 chr3A 88.508 496 36 5 31 523 196879408 196878931 8.870000e-162 580.0
66 TraesCS2A01G229000 chr3A 79.900 602 82 20 1051 1624 7208441 7209031 5.730000e-109 405.0
67 TraesCS2A01G229000 chr3A 93.827 162 9 1 2793 2953 746633034 746632873 4.750000e-60 243.0
68 TraesCS2A01G229000 chr3A 90.116 172 16 1 1217 1388 650047561 650047731 6.190000e-54 222.0
69 TraesCS2A01G229000 chr3A 86.992 123 13 3 3904 4025 432857407 432857527 8.300000e-28 135.0
70 TraesCS2A01G229000 chr3A 100.000 65 0 0 900 964 196878659 196878595 2.320000e-23 121.0
71 TraesCS2A01G229000 chr4D 93.210 162 11 0 2792 2953 102535254 102535415 6.150000e-59 239.0
72 TraesCS2A01G229000 chr4D 88.136 59 5 2 1557 1613 297388468 297388410 8.540000e-08 69.4
73 TraesCS2A01G229000 chr3B 93.210 162 9 2 2793 2952 52435193 52435354 2.210000e-58 237.0
74 TraesCS2A01G229000 chr3B 100.000 51 0 0 4705 4755 680920380 680920430 1.410000e-15 95.3
75 TraesCS2A01G229000 chr3B 100.000 50 0 0 4705 4754 733434174 733434125 5.070000e-15 93.5
76 TraesCS2A01G229000 chr3B 88.889 63 7 0 1881 1943 820052043 820051981 1.420000e-10 78.7
77 TraesCS2A01G229000 chr6B 84.211 209 26 3 1955 2162 565271564 565271766 3.750000e-46 196.0
78 TraesCS2A01G229000 chrUn 83.010 206 33 1 81 284 40168867 40168662 8.130000e-43 185.0
79 TraesCS2A01G229000 chrUn 83.092 207 32 2 81 284 297515847 297515641 8.130000e-43 185.0
80 TraesCS2A01G229000 chrUn 83.092 207 32 2 81 284 343491108 343491314 8.130000e-43 185.0
81 TraesCS2A01G229000 chrUn 79.730 222 33 8 3586 3804 79730337 79730125 2.960000e-32 150.0
82 TraesCS2A01G229000 chrUn 89.474 114 12 0 3921 4034 305213127 305213240 1.380000e-30 145.0
83 TraesCS2A01G229000 chrUn 96.721 61 2 0 4025 4085 451646585 451646645 8.420000e-18 102.0
84 TraesCS2A01G229000 chr1D 94.000 100 6 0 3923 4022 472174538 472174439 8.240000e-33 152.0
85 TraesCS2A01G229000 chr1D 93.651 63 4 0 4024 4086 483951435 483951373 1.410000e-15 95.3
86 TraesCS2A01G229000 chr1B 90.179 112 10 1 3921 4032 301472176 301472066 1.380000e-30 145.0
87 TraesCS2A01G229000 chr1B 94.030 67 3 1 4019 4085 38277557 38277622 3.030000e-17 100.0
88 TraesCS2A01G229000 chr1B 100.000 51 0 0 4705 4755 524489546 524489596 1.410000e-15 95.3
89 TraesCS2A01G229000 chr1B 92.857 42 0 3 3511 3550 378402970 378403010 1.850000e-04 58.4
90 TraesCS2A01G229000 chr1A 95.082 61 3 0 4024 4084 84012446 84012386 3.920000e-16 97.1
91 TraesCS2A01G229000 chr7D 98.039 51 1 0 4705 4755 488087104 488087054 6.550000e-14 89.8
92 TraesCS2A01G229000 chr7D 92.105 38 1 1 3513 3550 533909969 533910004 9.000000e-03 52.8
93 TraesCS2A01G229000 chr4B 98.039 51 1 0 4705 4755 223381454 223381504 6.550000e-14 89.8
94 TraesCS2A01G229000 chr4B 94.595 37 1 1 3517 3553 128540860 128540825 6.650000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G229000 chr2A 256206400 256211154 4754 False 8781.000000 8781 100.000000 1 4755 1 chr2A.!!$F1 4754
1 TraesCS2A01G229000 chr2A 353948775 353949712 937 False 1262.000000 1262 90.796000 3 965 1 chr2A.!!$F2 962
2 TraesCS2A01G229000 chr2D 570409811 570412477 2666 True 1712.500000 2364 89.626500 34 2748 2 chr2D.!!$R2 2714
3 TraesCS2A01G229000 chr5A 638285246 638287865 2619 False 1429.333333 1958 96.562000 3 2780 3 chr5A.!!$F2 2777
4 TraesCS2A01G229000 chr5A 287632896 287633747 851 True 1223.000000 1223 92.440000 96 964 1 chr5A.!!$R2 868
5 TraesCS2A01G229000 chr5A 299485523 299488356 2833 True 1220.000000 1500 90.960667 37 2778 3 chr5A.!!$R4 2741
6 TraesCS2A01G229000 chr5A 648277403 648278325 922 True 765.000000 765 81.998000 1838 2780 1 chr5A.!!$R3 942
7 TraesCS2A01G229000 chr7A 498134042 498136693 2651 True 1650.500000 1851 89.664500 31 2616 2 chr7A.!!$R6 2585
8 TraesCS2A01G229000 chr7A 90448343 90449181 838 True 739.000000 739 83.217000 1955 2780 1 chr7A.!!$R1 825
9 TraesCS2A01G229000 chr4A 374547963 374548821 858 False 1192.000000 1192 91.591000 90 964 1 chr4A.!!$F1 874
10 TraesCS2A01G229000 chr4A 104101399 104104252 2853 True 1172.000000 1530 89.806667 31 2780 3 chr4A.!!$R3 2749
11 TraesCS2A01G229000 chr4A 372318441 372319055 614 True 507.000000 507 81.623000 832 1484 1 chr4A.!!$R1 652
12 TraesCS2A01G229000 chr6A 141410497 141411417 920 False 1129.000000 1129 88.613000 3 964 1 chr6A.!!$F1 961
13 TraesCS2A01G229000 chr5D 551066997 551068034 1037 False 968.000000 968 83.766000 1718 2777 1 chr5D.!!$F4 1059
14 TraesCS2A01G229000 chr5D 322772798 322773636 838 True 752.000000 752 83.469000 1955 2781 1 chr5D.!!$R2 826
15 TraesCS2A01G229000 chr3D 560648973 560649940 967 True 909.000000 909 83.848000 1792 2780 1 chr3D.!!$R3 988
16 TraesCS2A01G229000 chr7B 442333565 442334604 1039 True 889.000000 889 82.424000 1718 2780 1 chr7B.!!$R2 1062
17 TraesCS2A01G229000 chr6D 450011612 450012983 1371 False 507.666667 730 90.200000 2949 4680 3 chr6D.!!$F3 1731
18 TraesCS2A01G229000 chr5B 374390795 374391633 838 True 721.000000 721 82.927000 1959 2781 1 chr5B.!!$R2 822
19 TraesCS2A01G229000 chr3A 7208441 7209031 590 False 405.000000 405 79.900000 1051 1624 1 chr3A.!!$F1 573
20 TraesCS2A01G229000 chr3A 196878595 196879408 813 True 350.500000 580 94.254000 31 964 2 chr3A.!!$R2 933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
885 1018 3.887716 GGCATCTGGCTGACTTTCAATAT 59.112 43.478 0.0 0.0 44.01 1.28 F
2789 3310 0.036294 GGAGAACAAGGAACGGAGGG 60.036 60.000 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2819 3340 0.037590 TGCGCTATTTGTGGGAGGTT 59.962 50.0 9.73 0.00 0.00 3.50 R
4685 5213 0.042131 ACCGTACTTCCCCATGGAGA 59.958 55.0 15.22 1.04 43.07 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
830 963 9.783081 AATCATTGTATATGTCACTTATGCTGA 57.217 29.630 1.39 0.00 0.00 4.26
885 1018 3.887716 GGCATCTGGCTGACTTTCAATAT 59.112 43.478 0.00 0.00 44.01 1.28
1220 1396 6.469782 AAGAAGGAAAACAAATGAGCTTCA 57.530 33.333 0.00 0.00 0.00 3.02
1542 1850 5.586243 AGCGCTGAATTAAATACACATGAGT 59.414 36.000 10.39 0.00 0.00 3.41
1543 1851 6.094048 AGCGCTGAATTAAATACACATGAGTT 59.906 34.615 10.39 0.00 0.00 3.01
1544 1852 7.279981 AGCGCTGAATTAAATACACATGAGTTA 59.720 33.333 10.39 0.00 0.00 2.24
1546 1854 9.586150 CGCTGAATTAAATACACATGAGTTATC 57.414 33.333 0.00 0.00 0.00 1.75
2290 2776 4.218312 GGAATATCCAACAGCCTCCAAAT 58.782 43.478 0.00 0.00 36.28 2.32
2391 2877 9.289303 CTATTGATAAACGCAGCAAGTTTTAAT 57.711 29.630 8.97 9.74 41.44 1.40
2460 2946 8.713737 TCATCATACTATATCAGCTTCAATGC 57.286 34.615 0.00 0.00 0.00 3.56
2533 3027 0.541863 ACTGCAGGGGTAGGATTTCG 59.458 55.000 19.93 0.00 0.00 3.46
2781 3302 4.788925 TTCTTTTGGAGGAGAACAAGGA 57.211 40.909 0.00 0.00 0.00 3.36
2782 3303 4.788925 TCTTTTGGAGGAGAACAAGGAA 57.211 40.909 0.00 0.00 0.00 3.36
2783 3304 4.461198 TCTTTTGGAGGAGAACAAGGAAC 58.539 43.478 0.00 0.00 0.00 3.62
2784 3305 2.543777 TTGGAGGAGAACAAGGAACG 57.456 50.000 0.00 0.00 0.00 3.95
2785 3306 0.685097 TGGAGGAGAACAAGGAACGG 59.315 55.000 0.00 0.00 0.00 4.44
2786 3307 0.974383 GGAGGAGAACAAGGAACGGA 59.026 55.000 0.00 0.00 0.00 4.69
2787 3308 1.066787 GGAGGAGAACAAGGAACGGAG 60.067 57.143 0.00 0.00 0.00 4.63
2788 3309 0.977395 AGGAGAACAAGGAACGGAGG 59.023 55.000 0.00 0.00 0.00 4.30
2789 3310 0.036294 GGAGAACAAGGAACGGAGGG 60.036 60.000 0.00 0.00 0.00 4.30
2790 3311 0.974383 GAGAACAAGGAACGGAGGGA 59.026 55.000 0.00 0.00 0.00 4.20
2791 3312 0.977395 AGAACAAGGAACGGAGGGAG 59.023 55.000 0.00 0.00 0.00 4.30
2792 3313 0.685660 GAACAAGGAACGGAGGGAGT 59.314 55.000 0.00 0.00 0.00 3.85
2793 3314 1.897802 GAACAAGGAACGGAGGGAGTA 59.102 52.381 0.00 0.00 0.00 2.59
2794 3315 1.558233 ACAAGGAACGGAGGGAGTAG 58.442 55.000 0.00 0.00 0.00 2.57
2795 3316 1.076677 ACAAGGAACGGAGGGAGTAGA 59.923 52.381 0.00 0.00 0.00 2.59
2796 3317 2.292323 ACAAGGAACGGAGGGAGTAGAT 60.292 50.000 0.00 0.00 0.00 1.98
2797 3318 2.074729 AGGAACGGAGGGAGTAGATG 57.925 55.000 0.00 0.00 0.00 2.90
2798 3319 1.288335 AGGAACGGAGGGAGTAGATGT 59.712 52.381 0.00 0.00 0.00 3.06
2799 3320 2.108970 GGAACGGAGGGAGTAGATGTT 58.891 52.381 0.00 0.00 0.00 2.71
2800 3321 2.500504 GGAACGGAGGGAGTAGATGTTT 59.499 50.000 0.00 0.00 0.00 2.83
2801 3322 3.055312 GGAACGGAGGGAGTAGATGTTTT 60.055 47.826 0.00 0.00 0.00 2.43
2802 3323 4.565028 GGAACGGAGGGAGTAGATGTTTTT 60.565 45.833 0.00 0.00 0.00 1.94
2825 3346 7.696992 TTTAAGGATGTCACATTTAACCTCC 57.303 36.000 0.00 0.00 32.24 4.30
2826 3347 4.236527 AGGATGTCACATTTAACCTCCC 57.763 45.455 0.00 0.00 32.42 4.30
2827 3348 3.591527 AGGATGTCACATTTAACCTCCCA 59.408 43.478 0.00 0.00 32.42 4.37
2828 3349 3.694566 GGATGTCACATTTAACCTCCCAC 59.305 47.826 0.00 0.00 0.00 4.61
2829 3350 3.866703 TGTCACATTTAACCTCCCACA 57.133 42.857 0.00 0.00 0.00 4.17
2830 3351 4.171878 TGTCACATTTAACCTCCCACAA 57.828 40.909 0.00 0.00 0.00 3.33
2831 3352 4.537751 TGTCACATTTAACCTCCCACAAA 58.462 39.130 0.00 0.00 0.00 2.83
2832 3353 5.144100 TGTCACATTTAACCTCCCACAAAT 58.856 37.500 0.00 0.00 0.00 2.32
2833 3354 6.307776 TGTCACATTTAACCTCCCACAAATA 58.692 36.000 0.00 0.00 0.00 1.40
2834 3355 6.432783 TGTCACATTTAACCTCCCACAAATAG 59.567 38.462 0.00 0.00 0.00 1.73
2835 3356 5.417580 TCACATTTAACCTCCCACAAATAGC 59.582 40.000 0.00 0.00 0.00 2.97
2836 3357 4.398044 ACATTTAACCTCCCACAAATAGCG 59.602 41.667 0.00 0.00 0.00 4.26
2837 3358 2.032680 TAACCTCCCACAAATAGCGC 57.967 50.000 0.00 0.00 0.00 5.92
2838 3359 0.037590 AACCTCCCACAAATAGCGCA 59.962 50.000 11.47 0.00 0.00 6.09
2839 3360 0.392998 ACCTCCCACAAATAGCGCAG 60.393 55.000 11.47 0.00 0.00 5.18
2853 3374 3.639162 CGCAGCAACAAGGAACAAA 57.361 47.368 0.00 0.00 0.00 2.83
2854 3375 1.919918 CGCAGCAACAAGGAACAAAA 58.080 45.000 0.00 0.00 0.00 2.44
2855 3376 2.266554 CGCAGCAACAAGGAACAAAAA 58.733 42.857 0.00 0.00 0.00 1.94
2902 3423 4.952262 CACAAACATAGTGGACATCAGG 57.048 45.455 0.00 0.00 33.43 3.86
2903 3424 4.326826 CACAAACATAGTGGACATCAGGT 58.673 43.478 0.00 0.00 33.43 4.00
2904 3425 4.761739 CACAAACATAGTGGACATCAGGTT 59.238 41.667 0.00 0.00 33.43 3.50
2905 3426 5.937540 CACAAACATAGTGGACATCAGGTTA 59.062 40.000 0.00 0.00 33.43 2.85
2906 3427 6.092670 CACAAACATAGTGGACATCAGGTTAG 59.907 42.308 0.00 0.00 33.43 2.34
2907 3428 6.013725 ACAAACATAGTGGACATCAGGTTAGA 60.014 38.462 0.00 0.00 0.00 2.10
2908 3429 6.814954 AACATAGTGGACATCAGGTTAGAT 57.185 37.500 0.00 0.00 0.00 1.98
2922 3443 9.201127 CATCAGGTTAGATGTGACATAACTATG 57.799 37.037 10.13 9.49 40.35 2.23
2951 3472 5.632118 TCTAGATGTATCCTAGACACACCC 58.368 45.833 0.00 0.00 38.08 4.61
2981 3502 5.344743 TTGGGTCTCTCTGTCATTGATAC 57.655 43.478 0.00 0.00 0.00 2.24
2985 3506 5.038033 GGTCTCTCTGTCATTGATACGTTC 58.962 45.833 0.00 0.00 0.00 3.95
2999 3520 2.830772 ACGTTCATTCATGCAATCCG 57.169 45.000 0.00 0.00 0.00 4.18
3021 3542 9.915629 ATCCGAATTATGTAGAGATAACTTCAC 57.084 33.333 0.00 0.00 0.00 3.18
3022 3543 8.909923 TCCGAATTATGTAGAGATAACTTCACA 58.090 33.333 0.00 0.00 0.00 3.58
3025 3546 9.262358 GAATTATGTAGAGATAACTTCACACCC 57.738 37.037 0.00 0.00 0.00 4.61
3027 3548 4.684724 TGTAGAGATAACTTCACACCCCT 58.315 43.478 0.00 0.00 0.00 4.79
3036 3557 3.853207 ACTTCACACCCCTACTGTTAGA 58.147 45.455 0.00 0.00 0.00 2.10
3069 3590 6.182507 TCACACTGGTTAGTTTGGTTCTAT 57.817 37.500 0.00 0.00 35.73 1.98
3094 3615 6.704289 AAACCAAAGTACAGTAGGAAAACC 57.296 37.500 0.00 0.00 0.00 3.27
3095 3616 5.641789 ACCAAAGTACAGTAGGAAAACCT 57.358 39.130 0.00 0.00 0.00 3.50
3096 3617 6.009908 ACCAAAGTACAGTAGGAAAACCTT 57.990 37.500 0.00 0.00 0.00 3.50
3097 3618 5.826208 ACCAAAGTACAGTAGGAAAACCTTG 59.174 40.000 0.00 0.00 0.00 3.61
3098 3619 5.278315 CCAAAGTACAGTAGGAAAACCTTGC 60.278 44.000 0.00 0.00 0.00 4.01
3099 3620 4.017177 AGTACAGTAGGAAAACCTTGCC 57.983 45.455 0.00 0.00 0.00 4.52
3100 3621 1.892209 ACAGTAGGAAAACCTTGCCG 58.108 50.000 0.00 0.00 0.00 5.69
3101 3622 1.418637 ACAGTAGGAAAACCTTGCCGA 59.581 47.619 0.00 0.00 0.00 5.54
3102 3623 2.076863 CAGTAGGAAAACCTTGCCGAG 58.923 52.381 0.00 0.00 0.00 4.63
3103 3624 1.975680 AGTAGGAAAACCTTGCCGAGA 59.024 47.619 0.00 0.00 0.00 4.04
3104 3625 2.572104 AGTAGGAAAACCTTGCCGAGAT 59.428 45.455 0.00 0.00 0.00 2.75
3145 3666 9.436957 ACTGAATTCAGATCACGTTAGTTTTAT 57.563 29.630 36.15 9.55 46.59 1.40
3201 3726 7.542824 GCTAATAGATTCGGTCAGGATAGTTTC 59.457 40.741 0.00 0.00 0.00 2.78
3204 3729 1.471119 TCGGTCAGGATAGTTTCGCT 58.529 50.000 0.00 0.00 0.00 4.93
3215 3740 4.631813 GGATAGTTTCGCTGTTTCATGACT 59.368 41.667 0.00 0.00 0.00 3.41
3218 3743 3.003689 AGTTTCGCTGTTTCATGACTTGG 59.996 43.478 0.00 0.00 0.00 3.61
3235 3760 4.154347 GTGAGCTCGAGGCAGGGG 62.154 72.222 15.58 0.00 44.79 4.79
3249 3774 2.468015 AGGGGCACTGATTGTCTGT 58.532 52.632 0.00 0.00 0.00 3.41
3250 3775 0.773644 AGGGGCACTGATTGTCTGTT 59.226 50.000 0.00 0.00 0.00 3.16
3251 3776 1.168714 GGGGCACTGATTGTCTGTTC 58.831 55.000 0.00 0.00 0.00 3.18
3252 3777 1.545428 GGGGCACTGATTGTCTGTTCA 60.545 52.381 0.00 0.00 0.00 3.18
3253 3778 2.229792 GGGCACTGATTGTCTGTTCAA 58.770 47.619 0.00 0.00 0.00 2.69
3254 3779 2.821969 GGGCACTGATTGTCTGTTCAAT 59.178 45.455 0.00 0.00 40.20 2.57
3255 3780 3.366679 GGGCACTGATTGTCTGTTCAATG 60.367 47.826 0.00 0.00 38.03 2.82
3256 3781 3.240069 GCACTGATTGTCTGTTCAATGC 58.760 45.455 0.00 0.00 38.03 3.56
3257 3782 3.304861 GCACTGATTGTCTGTTCAATGCA 60.305 43.478 1.93 0.00 38.03 3.96
3258 3783 4.224433 CACTGATTGTCTGTTCAATGCAC 58.776 43.478 0.00 0.00 38.03 4.57
3259 3784 4.023450 CACTGATTGTCTGTTCAATGCACT 60.023 41.667 0.00 0.00 38.03 4.40
3260 3785 4.581824 ACTGATTGTCTGTTCAATGCACTT 59.418 37.500 0.00 0.00 38.03 3.16
3261 3786 5.068198 ACTGATTGTCTGTTCAATGCACTTT 59.932 36.000 0.00 0.00 38.03 2.66
3262 3787 5.904941 TGATTGTCTGTTCAATGCACTTTT 58.095 33.333 0.00 0.00 38.03 2.27
3263 3788 5.749588 TGATTGTCTGTTCAATGCACTTTTG 59.250 36.000 0.00 0.00 38.03 2.44
3264 3789 4.717233 TGTCTGTTCAATGCACTTTTGT 57.283 36.364 0.00 0.00 0.00 2.83
3265 3790 5.070770 TGTCTGTTCAATGCACTTTTGTT 57.929 34.783 0.00 0.00 0.00 2.83
3266 3791 5.477510 TGTCTGTTCAATGCACTTTTGTTT 58.522 33.333 0.00 0.00 0.00 2.83
3267 3792 5.576384 TGTCTGTTCAATGCACTTTTGTTTC 59.424 36.000 0.00 0.00 0.00 2.78
3268 3793 5.807011 GTCTGTTCAATGCACTTTTGTTTCT 59.193 36.000 0.00 0.00 0.00 2.52
3269 3794 5.806502 TCTGTTCAATGCACTTTTGTTTCTG 59.193 36.000 0.00 0.00 0.00 3.02
3270 3795 5.477510 TGTTCAATGCACTTTTGTTTCTGT 58.522 33.333 0.00 0.00 0.00 3.41
3271 3796 5.348179 TGTTCAATGCACTTTTGTTTCTGTG 59.652 36.000 0.00 0.00 0.00 3.66
3272 3797 5.070770 TCAATGCACTTTTGTTTCTGTGT 57.929 34.783 0.00 0.00 33.44 3.72
3273 3798 5.477510 TCAATGCACTTTTGTTTCTGTGTT 58.522 33.333 0.00 0.00 33.44 3.32
3274 3799 5.576384 TCAATGCACTTTTGTTTCTGTGTTC 59.424 36.000 0.00 0.00 33.44 3.18
3275 3800 4.511617 TGCACTTTTGTTTCTGTGTTCA 57.488 36.364 0.00 0.00 33.44 3.18
3276 3801 4.484236 TGCACTTTTGTTTCTGTGTTCAG 58.516 39.130 0.00 0.00 42.54 3.02
3277 3802 4.022416 TGCACTTTTGTTTCTGTGTTCAGT 60.022 37.500 0.00 0.00 41.91 3.41
3278 3803 4.923281 GCACTTTTGTTTCTGTGTTCAGTT 59.077 37.500 0.00 0.00 41.91 3.16
3279 3804 5.405269 GCACTTTTGTTTCTGTGTTCAGTTT 59.595 36.000 0.00 0.00 41.91 2.66
3280 3805 6.073819 GCACTTTTGTTTCTGTGTTCAGTTTT 60.074 34.615 0.00 0.00 41.91 2.43
3281 3806 7.282916 CACTTTTGTTTCTGTGTTCAGTTTTG 58.717 34.615 0.00 0.00 41.91 2.44
3282 3807 7.168972 CACTTTTGTTTCTGTGTTCAGTTTTGA 59.831 33.333 0.00 0.00 41.91 2.69
3283 3808 7.382218 ACTTTTGTTTCTGTGTTCAGTTTTGAG 59.618 33.333 0.00 0.00 41.91 3.02
3284 3809 6.567687 TTGTTTCTGTGTTCAGTTTTGAGA 57.432 33.333 0.00 0.00 41.91 3.27
3285 3810 6.567687 TGTTTCTGTGTTCAGTTTTGAGAA 57.432 33.333 0.00 0.00 41.91 2.87
3286 3811 7.156876 TGTTTCTGTGTTCAGTTTTGAGAAT 57.843 32.000 0.00 0.00 41.91 2.40
3287 3812 7.028962 TGTTTCTGTGTTCAGTTTTGAGAATG 58.971 34.615 0.00 0.00 41.91 2.67
3288 3813 5.173774 TCTGTGTTCAGTTTTGAGAATGC 57.826 39.130 0.00 0.00 41.91 3.56
3289 3814 4.036734 TCTGTGTTCAGTTTTGAGAATGCC 59.963 41.667 0.00 0.00 41.91 4.40
3290 3815 3.698539 TGTGTTCAGTTTTGAGAATGCCA 59.301 39.130 0.00 0.00 34.15 4.92
3291 3816 4.159321 TGTGTTCAGTTTTGAGAATGCCAA 59.841 37.500 0.00 0.00 34.15 4.52
3292 3817 5.108517 GTGTTCAGTTTTGAGAATGCCAAA 58.891 37.500 0.00 0.00 34.15 3.28
3293 3818 5.232838 GTGTTCAGTTTTGAGAATGCCAAAG 59.767 40.000 0.00 0.00 35.29 2.77
3294 3819 5.105392 TGTTCAGTTTTGAGAATGCCAAAGT 60.105 36.000 0.00 0.00 35.29 2.66
3295 3820 4.935702 TCAGTTTTGAGAATGCCAAAGTG 58.064 39.130 0.00 0.00 35.29 3.16
3296 3821 4.053295 CAGTTTTGAGAATGCCAAAGTGG 58.947 43.478 0.00 0.00 41.55 4.00
3297 3822 3.706086 AGTTTTGAGAATGCCAAAGTGGT 59.294 39.130 0.00 0.00 40.46 4.16
3298 3823 4.051237 GTTTTGAGAATGCCAAAGTGGTC 58.949 43.478 0.00 0.00 40.46 4.02
3299 3824 2.655090 TGAGAATGCCAAAGTGGTCA 57.345 45.000 0.00 0.00 40.46 4.02
3320 3845 3.876914 CACTGCGGTGGATTGTATTATGT 59.123 43.478 18.43 0.00 39.59 2.29
3323 3848 3.874543 TGCGGTGGATTGTATTATGTCAC 59.125 43.478 0.00 0.00 0.00 3.67
3343 3868 6.823182 TGTCACTGGTATGTGATAAGAATTGG 59.177 38.462 0.64 0.00 46.77 3.16
3365 3890 4.503910 GGAACATTATTCTTTTGCCACCC 58.496 43.478 0.00 0.00 0.00 4.61
3373 3898 0.527565 CTTTTGCCACCCAGGATTCG 59.472 55.000 0.00 0.00 41.22 3.34
3397 3922 2.555199 CTCCGTGAAAAGCTATGGGAG 58.445 52.381 0.00 0.00 34.27 4.30
3409 3934 6.521527 AAGCTATGGGAGGTATGAAGATTT 57.478 37.500 0.00 0.00 33.71 2.17
3418 3943 6.547510 GGGAGGTATGAAGATTTGTTAGCATT 59.452 38.462 0.00 0.00 0.00 3.56
3421 3946 8.218338 AGGTATGAAGATTTGTTAGCATTCTG 57.782 34.615 0.00 0.00 0.00 3.02
3441 3966 4.892934 TCTGCTTTTACCATTTTGTCACCT 59.107 37.500 0.00 0.00 0.00 4.00
3442 3967 4.942852 TGCTTTTACCATTTTGTCACCTG 58.057 39.130 0.00 0.00 0.00 4.00
3513 4038 9.965824 AACATATTAATACAATTAGCAAGCACC 57.034 29.630 0.00 0.00 0.00 5.01
3514 4039 9.130661 ACATATTAATACAATTAGCAAGCACCA 57.869 29.630 0.00 0.00 0.00 4.17
3522 4047 9.745018 ATACAATTAGCAAGCACCATATTATCT 57.255 29.630 0.00 0.00 0.00 1.98
3524 4049 9.573166 ACAATTAGCAAGCACCATATTATCTAA 57.427 29.630 0.00 0.00 0.00 2.10
3594 4119 4.684484 ATGACATAGCAGAATGAGCTCA 57.316 40.909 20.79 20.79 42.32 4.26
3600 4125 5.932883 ACATAGCAGAATGAGCTCATGTATG 59.067 40.000 29.34 26.12 42.32 2.39
3610 4135 4.156556 TGAGCTCATGTATGTTTTGCTTCC 59.843 41.667 13.74 0.00 0.00 3.46
3613 4138 4.728882 GCTCATGTATGTTTTGCTTCCTCG 60.729 45.833 0.00 0.00 0.00 4.63
3614 4139 3.126858 TCATGTATGTTTTGCTTCCTCGC 59.873 43.478 0.00 0.00 0.00 5.03
3617 4142 0.883833 ATGTTTTGCTTCCTCGCAGG 59.116 50.000 0.00 0.00 41.55 4.85
3624 4149 1.078848 CTTCCTCGCAGGTTCCTGG 60.079 63.158 18.81 10.09 36.53 4.45
3637 4162 2.304761 GGTTCCTGGTGTTCCTGTGATA 59.695 50.000 0.00 0.00 34.23 2.15
3648 4173 6.408092 GGTGTTCCTGTGATATATGGTCTGAA 60.408 42.308 0.00 0.00 0.00 3.02
3652 4177 7.055667 TCCTGTGATATATGGTCTGAAGAAC 57.944 40.000 0.00 0.00 0.00 3.01
3653 4178 6.841229 TCCTGTGATATATGGTCTGAAGAACT 59.159 38.462 0.00 0.00 31.73 3.01
3654 4179 7.014711 TCCTGTGATATATGGTCTGAAGAACTC 59.985 40.741 0.00 0.00 31.73 3.01
3671 4196 4.574599 AACTCCTTGTTCATTGAGCAAC 57.425 40.909 11.37 0.00 32.63 4.17
3748 4274 9.620660 TTGAAAAATCCGAATTTAAGAAGCTAC 57.379 29.630 0.00 0.00 33.93 3.58
3767 4293 0.108615 CCCATGACTCAGGACGTCAC 60.109 60.000 18.91 6.91 43.44 3.67
3819 4345 5.711506 ACAGACATGATGTGGCATAGAAAAA 59.288 36.000 1.23 0.00 38.81 1.94
3855 4381 5.813157 GGAACAGAGCAAAGGTTAGTATCTC 59.187 44.000 0.00 0.00 0.00 2.75
3856 4382 5.346181 ACAGAGCAAAGGTTAGTATCTCC 57.654 43.478 0.00 0.00 0.00 3.71
3857 4383 4.162509 ACAGAGCAAAGGTTAGTATCTCCC 59.837 45.833 0.00 0.00 0.00 4.30
3858 4384 4.407296 CAGAGCAAAGGTTAGTATCTCCCT 59.593 45.833 0.00 0.00 0.00 4.20
3859 4385 4.651962 AGAGCAAAGGTTAGTATCTCCCTC 59.348 45.833 0.00 0.00 0.00 4.30
3860 4386 3.712218 AGCAAAGGTTAGTATCTCCCTCC 59.288 47.826 0.00 0.00 0.00 4.30
3861 4387 3.454812 GCAAAGGTTAGTATCTCCCTCCA 59.545 47.826 0.00 0.00 0.00 3.86
3862 4388 4.103311 GCAAAGGTTAGTATCTCCCTCCAT 59.897 45.833 0.00 0.00 0.00 3.41
3863 4389 5.398012 GCAAAGGTTAGTATCTCCCTCCATT 60.398 44.000 0.00 0.00 0.00 3.16
3864 4390 6.292150 CAAAGGTTAGTATCTCCCTCCATTC 58.708 44.000 0.00 0.00 0.00 2.67
3865 4391 4.494591 AGGTTAGTATCTCCCTCCATTCC 58.505 47.826 0.00 0.00 0.00 3.01
3866 4392 4.173043 AGGTTAGTATCTCCCTCCATTCCT 59.827 45.833 0.00 0.00 0.00 3.36
3867 4393 5.378985 AGGTTAGTATCTCCCTCCATTCCTA 59.621 44.000 0.00 0.00 0.00 2.94
3868 4394 6.082707 GGTTAGTATCTCCCTCCATTCCTAA 58.917 44.000 0.00 0.00 0.00 2.69
3869 4395 6.557633 GGTTAGTATCTCCCTCCATTCCTAAA 59.442 42.308 0.00 0.00 0.00 1.85
3870 4396 7.237887 GGTTAGTATCTCCCTCCATTCCTAAAT 59.762 40.741 0.00 0.00 0.00 1.40
3871 4397 9.322769 GTTAGTATCTCCCTCCATTCCTAAATA 57.677 37.037 0.00 0.00 0.00 1.40
3872 4398 9.548631 TTAGTATCTCCCTCCATTCCTAAATAG 57.451 37.037 0.00 0.00 0.00 1.73
3873 4399 7.780822 AGTATCTCCCTCCATTCCTAAATAGA 58.219 38.462 0.00 0.00 0.00 1.98
3874 4400 8.242325 AGTATCTCCCTCCATTCCTAAATAGAA 58.758 37.037 0.00 0.00 0.00 2.10
3875 4401 7.566658 ATCTCCCTCCATTCCTAAATAGAAG 57.433 40.000 0.00 0.00 0.00 2.85
3876 4402 6.693599 TCTCCCTCCATTCCTAAATAGAAGA 58.306 40.000 0.00 0.00 0.00 2.87
3877 4403 6.555360 TCTCCCTCCATTCCTAAATAGAAGAC 59.445 42.308 0.00 0.00 0.00 3.01
3878 4404 5.607171 TCCCTCCATTCCTAAATAGAAGACC 59.393 44.000 0.00 0.00 0.00 3.85
3879 4405 5.608860 CCCTCCATTCCTAAATAGAAGACCT 59.391 44.000 0.00 0.00 0.00 3.85
3880 4406 6.101881 CCCTCCATTCCTAAATAGAAGACCTT 59.898 42.308 0.00 0.00 0.00 3.50
3881 4407 7.366913 CCCTCCATTCCTAAATAGAAGACCTTT 60.367 40.741 0.00 0.00 0.00 3.11
3882 4408 8.055790 CCTCCATTCCTAAATAGAAGACCTTTT 58.944 37.037 0.00 0.00 0.00 2.27
3934 4460 9.553064 CATAGCAAAATGATATATACTCCCTCC 57.447 37.037 0.00 0.00 26.54 4.30
3935 4461 6.644347 AGCAAAATGATATATACTCCCTCCG 58.356 40.000 0.00 0.00 0.00 4.63
3936 4462 6.213600 AGCAAAATGATATATACTCCCTCCGT 59.786 38.462 0.00 0.00 0.00 4.69
3937 4463 6.879458 GCAAAATGATATATACTCCCTCCGTT 59.121 38.462 0.00 0.00 0.00 4.44
3938 4464 7.064728 GCAAAATGATATATACTCCCTCCGTTC 59.935 40.741 0.00 0.00 0.00 3.95
3939 4465 6.793505 AATGATATATACTCCCTCCGTTCC 57.206 41.667 0.00 0.00 0.00 3.62
3940 4466 5.265290 TGATATATACTCCCTCCGTTCCA 57.735 43.478 0.00 0.00 0.00 3.53
3941 4467 5.647230 TGATATATACTCCCTCCGTTCCAA 58.353 41.667 0.00 0.00 0.00 3.53
3942 4468 6.079336 TGATATATACTCCCTCCGTTCCAAA 58.921 40.000 0.00 0.00 0.00 3.28
3943 4469 6.555738 TGATATATACTCCCTCCGTTCCAAAA 59.444 38.462 0.00 0.00 0.00 2.44
3944 4470 5.906772 ATATACTCCCTCCGTTCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
3945 4471 8.674925 ATATATACTCCCTCCGTTCCAAAATA 57.325 34.615 0.00 0.00 0.00 1.40
3946 4472 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3947 4473 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3948 4474 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3949 4475 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3950 4476 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3951 4477 4.412199 TCCCTCCGTTCCAAAATAGATGAT 59.588 41.667 0.00 0.00 0.00 2.45
3952 4478 5.104109 TCCCTCCGTTCCAAAATAGATGATT 60.104 40.000 0.00 0.00 0.00 2.57
3953 4479 5.239525 CCCTCCGTTCCAAAATAGATGATTC 59.760 44.000 0.00 0.00 0.00 2.52
3954 4480 5.822519 CCTCCGTTCCAAAATAGATGATTCA 59.177 40.000 0.00 0.00 0.00 2.57
3955 4481 6.318648 CCTCCGTTCCAAAATAGATGATTCAA 59.681 38.462 0.00 0.00 0.00 2.69
3956 4482 7.083875 TCCGTTCCAAAATAGATGATTCAAC 57.916 36.000 0.00 0.00 0.00 3.18
3957 4483 6.884295 TCCGTTCCAAAATAGATGATTCAACT 59.116 34.615 1.83 1.83 0.00 3.16
3958 4484 7.393234 TCCGTTCCAAAATAGATGATTCAACTT 59.607 33.333 1.47 0.00 0.00 2.66
3959 4485 8.028938 CCGTTCCAAAATAGATGATTCAACTTT 58.971 33.333 1.47 0.00 0.00 2.66
3996 4522 8.320338 AGTACAAAATTAGTATAGAGCTGGGT 57.680 34.615 0.00 0.00 0.00 4.51
3997 4523 8.422566 AGTACAAAATTAGTATAGAGCTGGGTC 58.577 37.037 0.00 0.00 0.00 4.46
3998 4524 7.195374 ACAAAATTAGTATAGAGCTGGGTCA 57.805 36.000 0.00 0.00 0.00 4.02
3999 4525 7.806180 ACAAAATTAGTATAGAGCTGGGTCAT 58.194 34.615 0.00 0.00 0.00 3.06
4000 4526 7.934120 ACAAAATTAGTATAGAGCTGGGTCATC 59.066 37.037 0.00 0.00 0.00 2.92
4001 4527 7.863901 AAATTAGTATAGAGCTGGGTCATCT 57.136 36.000 0.00 0.00 0.00 2.90
4002 4528 8.958060 AAATTAGTATAGAGCTGGGTCATCTA 57.042 34.615 0.00 0.00 0.00 1.98
4003 4529 9.554053 AAATTAGTATAGAGCTGGGTCATCTAT 57.446 33.333 0.00 0.00 39.15 1.98
4004 4530 9.554053 AATTAGTATAGAGCTGGGTCATCTATT 57.446 33.333 0.00 0.00 37.43 1.73
4005 4531 8.958060 TTAGTATAGAGCTGGGTCATCTATTT 57.042 34.615 0.00 0.00 37.43 1.40
4006 4532 7.863901 AGTATAGAGCTGGGTCATCTATTTT 57.136 36.000 0.00 0.00 37.43 1.82
4007 4533 8.958060 AGTATAGAGCTGGGTCATCTATTTTA 57.042 34.615 0.00 0.00 37.43 1.52
4008 4534 9.030452 AGTATAGAGCTGGGTCATCTATTTTAG 57.970 37.037 0.00 0.00 37.43 1.85
4009 4535 9.026121 GTATAGAGCTGGGTCATCTATTTTAGA 57.974 37.037 0.00 0.00 37.43 2.10
4010 4536 6.814954 AGAGCTGGGTCATCTATTTTAGAA 57.185 37.500 0.00 0.00 38.50 2.10
4011 4537 6.587273 AGAGCTGGGTCATCTATTTTAGAAC 58.413 40.000 0.00 0.00 38.50 3.01
4012 4538 5.360591 AGCTGGGTCATCTATTTTAGAACG 58.639 41.667 0.00 0.00 38.50 3.95
4013 4539 4.511826 GCTGGGTCATCTATTTTAGAACGG 59.488 45.833 0.00 0.00 38.50 4.44
4014 4540 5.684030 GCTGGGTCATCTATTTTAGAACGGA 60.684 44.000 0.00 0.00 38.50 4.69
4015 4541 5.914033 TGGGTCATCTATTTTAGAACGGAG 58.086 41.667 0.00 0.00 38.50 4.63
4016 4542 5.163343 TGGGTCATCTATTTTAGAACGGAGG 60.163 44.000 0.00 0.00 38.50 4.30
4017 4543 5.298347 GGTCATCTATTTTAGAACGGAGGG 58.702 45.833 0.00 0.00 38.50 4.30
4018 4544 5.070047 GGTCATCTATTTTAGAACGGAGGGA 59.930 44.000 0.00 0.00 38.50 4.20
4019 4545 6.217294 GTCATCTATTTTAGAACGGAGGGAG 58.783 44.000 0.00 0.00 38.50 4.30
4020 4546 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
4021 4547 7.014038 GTCATCTATTTTAGAACGGAGGGAGTA 59.986 40.741 0.00 0.00 38.50 2.59
4022 4548 7.728981 TCATCTATTTTAGAACGGAGGGAGTAT 59.271 37.037 0.00 0.00 38.50 2.12
4023 4549 9.021807 CATCTATTTTAGAACGGAGGGAGTATA 57.978 37.037 0.00 0.00 38.50 1.47
4024 4550 9.771140 ATCTATTTTAGAACGGAGGGAGTATAT 57.229 33.333 0.00 0.00 38.50 0.86
4025 4551 9.240734 TCTATTTTAGAACGGAGGGAGTATATC 57.759 37.037 0.00 0.00 0.00 1.63
4026 4552 9.245481 CTATTTTAGAACGGAGGGAGTATATCT 57.755 37.037 0.00 0.00 0.00 1.98
4027 4553 6.896021 TTTAGAACGGAGGGAGTATATCTG 57.104 41.667 0.00 0.00 0.00 2.90
4028 4554 4.456662 AGAACGGAGGGAGTATATCTGT 57.543 45.455 0.00 0.00 34.02 3.41
4029 4555 5.579753 AGAACGGAGGGAGTATATCTGTA 57.420 43.478 0.00 0.00 32.32 2.74
4030 4556 6.142259 AGAACGGAGGGAGTATATCTGTAT 57.858 41.667 0.00 0.00 32.32 2.29
4031 4557 7.268212 AGAACGGAGGGAGTATATCTGTATA 57.732 40.000 0.00 0.00 32.32 1.47
4032 4558 7.874252 AGAACGGAGGGAGTATATCTGTATAT 58.126 38.462 0.00 0.00 32.32 0.86
4033 4559 9.000978 AGAACGGAGGGAGTATATCTGTATATA 57.999 37.037 0.00 0.00 32.32 0.86
4034 4560 9.275398 GAACGGAGGGAGTATATCTGTATATAG 57.725 40.741 0.00 0.00 32.39 1.31
4035 4561 8.334522 ACGGAGGGAGTATATCTGTATATAGT 57.665 38.462 0.00 0.00 37.05 2.12
4036 4562 8.431222 ACGGAGGGAGTATATCTGTATATAGTC 58.569 40.741 10.04 10.04 43.97 2.59
4049 4575 8.885693 TCTGTATATAGTCCATAGTGCAATCT 57.114 34.615 0.00 0.00 0.00 2.40
4050 4576 8.961634 TCTGTATATAGTCCATAGTGCAATCTC 58.038 37.037 0.00 0.00 0.00 2.75
4051 4577 8.885693 TGTATATAGTCCATAGTGCAATCTCT 57.114 34.615 0.00 0.00 0.00 3.10
4052 4578 9.975218 TGTATATAGTCCATAGTGCAATCTCTA 57.025 33.333 0.00 0.00 0.00 2.43
4057 4583 6.352516 AGTCCATAGTGCAATCTCTAAAAGG 58.647 40.000 0.00 0.00 0.00 3.11
4058 4584 6.069963 AGTCCATAGTGCAATCTCTAAAAGGT 60.070 38.462 0.00 0.00 0.00 3.50
4059 4585 6.258947 GTCCATAGTGCAATCTCTAAAAGGTC 59.741 42.308 0.00 0.00 0.00 3.85
4060 4586 6.156949 TCCATAGTGCAATCTCTAAAAGGTCT 59.843 38.462 0.00 0.00 0.00 3.85
4061 4587 6.825721 CCATAGTGCAATCTCTAAAAGGTCTT 59.174 38.462 0.00 0.00 0.00 3.01
4062 4588 7.987458 CCATAGTGCAATCTCTAAAAGGTCTTA 59.013 37.037 0.00 0.00 0.00 2.10
4063 4589 9.553064 CATAGTGCAATCTCTAAAAGGTCTTAT 57.447 33.333 0.00 0.00 0.00 1.73
4077 4603 8.959705 AAAAGGTCTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
4078 4604 6.667558 AGGTCTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
4079 4605 5.543020 AGGTCTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
4080 4606 5.541484 GGTCTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
4081 4607 6.295180 GGTCTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
4082 4608 6.267242 GTCTTATATTTAGGAACGGAGGGAGT 59.733 42.308 0.00 0.00 0.00 3.85
4099 4625 7.040494 GGAGGGAGTATACAACTACTGTTTTC 58.960 42.308 5.50 0.00 39.28 2.29
4131 4657 7.531317 ACTCCATGGTTATGATCTAGAGTAGT 58.469 38.462 12.58 0.00 36.36 2.73
4158 4684 8.562892 GGGTGTAGTCAATATTTTGAGATCATG 58.437 37.037 0.00 0.00 42.41 3.07
4175 4702 7.186397 AGATCATGCATCTCTCTCGCAAGAA 62.186 44.000 0.00 0.00 41.93 2.52
4192 4719 3.592898 AGAAAAATAAAGCCAAGCCCG 57.407 42.857 0.00 0.00 0.00 6.13
4194 4721 3.056821 AGAAAAATAAAGCCAAGCCCGAC 60.057 43.478 0.00 0.00 0.00 4.79
4196 4723 0.039035 AATAAAGCCAAGCCCGACCA 59.961 50.000 0.00 0.00 0.00 4.02
4197 4724 0.679960 ATAAAGCCAAGCCCGACCAC 60.680 55.000 0.00 0.00 0.00 4.16
4198 4725 2.757980 TAAAGCCAAGCCCGACCACC 62.758 60.000 0.00 0.00 0.00 4.61
4202 4729 4.263572 CAAGCCCGACCACCACCA 62.264 66.667 0.00 0.00 0.00 4.17
4240 4768 8.620416 GTTAATCAATCATGGCTACACAACATA 58.380 33.333 0.00 0.00 0.00 2.29
4243 4771 8.922931 ATCAATCATGGCTACACAACATAATA 57.077 30.769 0.00 0.00 0.00 0.98
4257 4785 9.624697 ACACAACATAATAAGTGTAAATGCTTG 57.375 29.630 0.00 0.00 42.84 4.01
4263 4791 9.289303 CATAATAAGTGTAAATGCTTGGAACAC 57.711 33.333 0.00 0.00 39.29 3.32
4267 4795 5.831997 AGTGTAAATGCTTGGAACACTTTC 58.168 37.500 0.77 0.00 46.38 2.62
4275 4803 3.251004 GCTTGGAACACTTTCACTGTAGG 59.749 47.826 0.00 0.00 39.29 3.18
4304 4832 7.041107 TCTTTCAATGTTGTAAAAGCAAGCTT 58.959 30.769 0.59 0.59 37.98 3.74
4306 4834 5.049167 TCAATGTTGTAAAAGCAAGCTTGG 58.951 37.500 27.10 9.80 36.26 3.61
4308 4836 4.727507 TGTTGTAAAAGCAAGCTTGGAA 57.272 36.364 27.10 0.00 36.26 3.53
4331 4859 8.416329 GGAATTGCATAACATCTTGAGGTTTAT 58.584 33.333 5.99 0.00 0.00 1.40
4335 4863 7.915508 TGCATAACATCTTGAGGTTTATAACG 58.084 34.615 5.99 0.00 0.00 3.18
4346 4874 5.484998 TGAGGTTTATAACGAAGGGTAAGGT 59.515 40.000 0.00 0.00 0.00 3.50
4351 4879 0.689055 AACGAAGGGTAAGGTGGACC 59.311 55.000 0.00 0.00 36.12 4.46
4352 4880 0.472352 ACGAAGGGTAAGGTGGACCA 60.472 55.000 0.00 0.00 38.86 4.02
4359 4887 2.307686 GGGTAAGGTGGACCAGAAATGA 59.692 50.000 0.00 0.00 38.86 2.57
4393 4921 8.153550 ACTGAATCTTTAGCTTCAGAAGAAAGA 58.846 33.333 23.00 21.06 45.86 2.52
4401 4929 8.594881 TTAGCTTCAGAAGAAAGACAAACTAG 57.405 34.615 14.86 0.00 32.35 2.57
4402 4930 5.994668 AGCTTCAGAAGAAAGACAAACTAGG 59.005 40.000 14.86 0.00 32.35 3.02
4403 4931 5.760743 GCTTCAGAAGAAAGACAAACTAGGT 59.239 40.000 14.86 0.00 32.35 3.08
4423 4951 3.195396 GGTGGGTTGAATGTGCACATAAT 59.805 43.478 31.55 18.10 35.10 1.28
4471 4999 0.758123 CTTGGGAGGAGCAGGATCTC 59.242 60.000 0.00 0.00 0.00 2.75
4491 5019 6.566079 TCTCCTGGACATTGAATGATACTT 57.434 37.500 12.80 0.00 0.00 2.24
4543 5071 4.280436 TGTGATGTTTACATTCGGAGGT 57.720 40.909 0.00 0.00 36.57 3.85
4548 5076 4.822036 TGTTTACATTCGGAGGTTGTTG 57.178 40.909 0.00 0.00 0.00 3.33
4549 5077 4.200874 TGTTTACATTCGGAGGTTGTTGT 58.799 39.130 0.00 0.00 0.00 3.32
4576 5104 9.855021 TTTTTAGCCTAATTAAGAAGTTGCATC 57.145 29.630 0.00 0.00 0.00 3.91
4577 5105 5.741388 AGCCTAATTAAGAAGTTGCATCG 57.259 39.130 0.00 0.00 0.00 3.84
4578 5106 4.576463 AGCCTAATTAAGAAGTTGCATCGG 59.424 41.667 0.00 0.00 0.00 4.18
4600 5128 6.428465 TCGGCACTAAAGAACATCAATTTACA 59.572 34.615 0.00 0.00 0.00 2.41
4601 5129 7.120579 TCGGCACTAAAGAACATCAATTTACAT 59.879 33.333 0.00 0.00 0.00 2.29
4633 5161 8.960591 AGAACTCAAAAATTGTGGAGGTATATG 58.039 33.333 4.97 0.00 0.00 1.78
4634 5162 7.645058 ACTCAAAAATTGTGGAGGTATATGG 57.355 36.000 4.97 0.00 0.00 2.74
4635 5163 7.182060 ACTCAAAAATTGTGGAGGTATATGGT 58.818 34.615 4.97 0.00 0.00 3.55
4636 5164 8.333235 ACTCAAAAATTGTGGAGGTATATGGTA 58.667 33.333 4.97 0.00 0.00 3.25
4637 5165 9.354673 CTCAAAAATTGTGGAGGTATATGGTAT 57.645 33.333 0.00 0.00 0.00 2.73
4670 5198 8.893563 TTATGTTTTCAAGGAGAATATTGGGT 57.106 30.769 0.00 0.00 35.83 4.51
4680 5208 6.334296 AGGAGAATATTGGGTGAGGATATGA 58.666 40.000 0.00 0.00 0.00 2.15
4681 5209 6.443206 AGGAGAATATTGGGTGAGGATATGAG 59.557 42.308 0.00 0.00 0.00 2.90
4682 5210 6.214412 GGAGAATATTGGGTGAGGATATGAGT 59.786 42.308 0.00 0.00 0.00 3.41
4683 5211 7.256835 GGAGAATATTGGGTGAGGATATGAGTT 60.257 40.741 0.00 0.00 0.00 3.01
4684 5212 8.050316 AGAATATTGGGTGAGGATATGAGTTT 57.950 34.615 0.00 0.00 0.00 2.66
4685 5213 8.506083 AGAATATTGGGTGAGGATATGAGTTTT 58.494 33.333 0.00 0.00 0.00 2.43
4686 5214 8.697507 AATATTGGGTGAGGATATGAGTTTTC 57.302 34.615 0.00 0.00 0.00 2.29
4687 5215 5.779241 TTGGGTGAGGATATGAGTTTTCT 57.221 39.130 0.00 0.00 0.00 2.52
4688 5216 5.359194 TGGGTGAGGATATGAGTTTTCTC 57.641 43.478 0.00 0.00 46.33 2.87
4689 5217 4.164221 TGGGTGAGGATATGAGTTTTCTCC 59.836 45.833 0.00 0.00 45.63 3.71
4690 5218 4.164221 GGGTGAGGATATGAGTTTTCTCCA 59.836 45.833 0.00 0.00 45.63 3.86
4691 5219 5.163152 GGGTGAGGATATGAGTTTTCTCCAT 60.163 44.000 0.00 0.00 45.63 3.41
4692 5220 5.762218 GGTGAGGATATGAGTTTTCTCCATG 59.238 44.000 0.00 0.00 45.63 3.66
4693 5221 5.762218 GTGAGGATATGAGTTTTCTCCATGG 59.238 44.000 4.97 4.97 45.63 3.66
4694 5222 5.163163 TGAGGATATGAGTTTTCTCCATGGG 60.163 44.000 13.02 2.57 45.63 4.00
4695 5223 4.105377 AGGATATGAGTTTTCTCCATGGGG 59.895 45.833 13.02 9.18 45.63 4.96
4696 5224 4.104738 GGATATGAGTTTTCTCCATGGGGA 59.895 45.833 11.36 11.36 45.63 4.81
4697 5225 5.399038 GGATATGAGTTTTCTCCATGGGGAA 60.399 44.000 23.76 23.76 44.38 3.97
4698 5226 3.439857 TGAGTTTTCTCCATGGGGAAG 57.560 47.619 25.84 9.85 44.38 3.46
4699 5227 2.716424 TGAGTTTTCTCCATGGGGAAGT 59.284 45.455 25.84 15.33 44.38 3.01
4700 5228 3.913799 TGAGTTTTCTCCATGGGGAAGTA 59.086 43.478 25.84 15.89 44.38 2.24
4701 5229 4.262617 GAGTTTTCTCCATGGGGAAGTAC 58.737 47.826 25.84 24.81 44.38 2.73
4702 5230 3.007635 GTTTTCTCCATGGGGAAGTACG 58.992 50.000 25.84 0.00 44.38 3.67
4703 5231 1.200519 TTCTCCATGGGGAAGTACGG 58.799 55.000 23.76 0.00 44.38 4.02
4704 5232 0.042131 TCTCCATGGGGAAGTACGGT 59.958 55.000 13.43 0.00 44.38 4.83
4705 5233 0.464452 CTCCATGGGGAAGTACGGTC 59.536 60.000 5.34 0.00 44.38 4.79
4706 5234 0.042131 TCCATGGGGAAGTACGGTCT 59.958 55.000 13.02 0.00 41.32 3.85
4707 5235 0.464452 CCATGGGGAAGTACGGTCTC 59.536 60.000 2.85 0.00 35.59 3.36
4708 5236 0.464452 CATGGGGAAGTACGGTCTCC 59.536 60.000 10.72 10.72 36.04 3.71
4709 5237 0.690077 ATGGGGAAGTACGGTCTCCC 60.690 60.000 14.05 13.96 34.37 4.30
4731 5259 3.601685 CAACGCACGGGCCCTTTT 61.602 61.111 22.43 0.00 36.38 2.27
4732 5260 3.601685 AACGCACGGGCCCTTTTG 61.602 61.111 22.43 15.24 36.38 2.44
4735 5263 2.675075 GCACGGGCCCTTTTGCTA 60.675 61.111 25.28 0.00 32.00 3.49
4736 5264 2.700773 GCACGGGCCCTTTTGCTAG 61.701 63.158 25.28 9.64 32.00 3.42
4737 5265 1.303317 CACGGGCCCTTTTGCTAGT 60.303 57.895 22.43 4.23 0.00 2.57
4738 5266 1.002502 ACGGGCCCTTTTGCTAGTC 60.003 57.895 22.43 0.00 0.00 2.59
4739 5267 1.299976 CGGGCCCTTTTGCTAGTCT 59.700 57.895 22.43 0.00 0.00 3.24
4740 5268 0.744771 CGGGCCCTTTTGCTAGTCTC 60.745 60.000 22.43 0.00 0.00 3.36
4741 5269 0.621082 GGGCCCTTTTGCTAGTCTCT 59.379 55.000 17.04 0.00 0.00 3.10
4742 5270 1.407575 GGGCCCTTTTGCTAGTCTCTC 60.408 57.143 17.04 0.00 0.00 3.20
4743 5271 1.407575 GGCCCTTTTGCTAGTCTCTCC 60.408 57.143 0.00 0.00 0.00 3.71
4744 5272 1.407575 GCCCTTTTGCTAGTCTCTCCC 60.408 57.143 0.00 0.00 0.00 4.30
4745 5273 2.192263 CCCTTTTGCTAGTCTCTCCCT 58.808 52.381 0.00 0.00 0.00 4.20
4746 5274 3.375699 CCCTTTTGCTAGTCTCTCCCTA 58.624 50.000 0.00 0.00 0.00 3.53
4747 5275 3.775316 CCCTTTTGCTAGTCTCTCCCTAA 59.225 47.826 0.00 0.00 0.00 2.69
4748 5276 4.410555 CCCTTTTGCTAGTCTCTCCCTAAT 59.589 45.833 0.00 0.00 0.00 1.73
4749 5277 5.602978 CCCTTTTGCTAGTCTCTCCCTAATA 59.397 44.000 0.00 0.00 0.00 0.98
4750 5278 6.099845 CCCTTTTGCTAGTCTCTCCCTAATAA 59.900 42.308 0.00 0.00 0.00 1.40
4751 5279 7.202139 CCCTTTTGCTAGTCTCTCCCTAATAAT 60.202 40.741 0.00 0.00 0.00 1.28
4752 5280 8.871125 CCTTTTGCTAGTCTCTCCCTAATAATA 58.129 37.037 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
789 921 6.715344 ACAATGATTTGCATTTGCTAACTG 57.285 33.333 3.94 2.37 44.68 3.16
885 1018 5.946972 TCACCAAACAAAACCTGAAGAGTTA 59.053 36.000 0.00 0.00 0.00 2.24
1220 1396 4.507710 ACTTTGTCATGCATCAGTCGTAT 58.492 39.130 0.00 0.00 0.00 3.06
2000 2364 0.538584 TGCCTGTGTAGATGCTCAGG 59.461 55.000 12.86 12.86 46.91 3.86
2391 2877 4.620589 ACATTTGGATGTGGAATTGCAA 57.379 36.364 0.00 0.00 44.64 4.08
2533 3027 1.152881 CCAGCCAAGGGATACTGCC 60.153 63.158 0.00 0.00 0.00 4.85
2749 3268 8.221965 TCTCCTCCAAAAGAAAGAAAAGTAAC 57.778 34.615 0.00 0.00 0.00 2.50
2751 3270 7.832187 TGTTCTCCTCCAAAAGAAAGAAAAGTA 59.168 33.333 0.00 0.00 33.53 2.24
2752 3271 6.663523 TGTTCTCCTCCAAAAGAAAGAAAAGT 59.336 34.615 0.00 0.00 33.53 2.66
2753 3272 7.100458 TGTTCTCCTCCAAAAGAAAGAAAAG 57.900 36.000 0.00 0.00 33.53 2.27
2781 3302 4.635699 AAAAACATCTACTCCCTCCGTT 57.364 40.909 0.00 0.00 0.00 4.44
2799 3320 8.581578 GGAGGTTAAATGTGACATCCTTAAAAA 58.418 33.333 4.31 0.00 40.18 1.94
2800 3321 7.177744 GGGAGGTTAAATGTGACATCCTTAAAA 59.822 37.037 10.93 0.00 42.29 1.52
2801 3322 6.661805 GGGAGGTTAAATGTGACATCCTTAAA 59.338 38.462 10.93 0.00 42.29 1.52
2802 3323 6.184789 GGGAGGTTAAATGTGACATCCTTAA 58.815 40.000 10.93 0.00 42.29 1.85
2803 3324 5.251932 TGGGAGGTTAAATGTGACATCCTTA 59.748 40.000 10.93 0.00 42.29 2.69
2804 3325 4.044065 TGGGAGGTTAAATGTGACATCCTT 59.956 41.667 10.93 0.00 42.29 3.36
2805 3326 3.591527 TGGGAGGTTAAATGTGACATCCT 59.408 43.478 10.93 0.23 42.29 3.24
2806 3327 3.694566 GTGGGAGGTTAAATGTGACATCC 59.305 47.826 2.93 2.93 42.01 3.51
2807 3328 4.331968 TGTGGGAGGTTAAATGTGACATC 58.668 43.478 0.00 0.00 0.00 3.06
2808 3329 4.380843 TGTGGGAGGTTAAATGTGACAT 57.619 40.909 0.00 0.00 0.00 3.06
2809 3330 3.866703 TGTGGGAGGTTAAATGTGACA 57.133 42.857 0.00 0.00 0.00 3.58
2810 3331 5.722021 ATTTGTGGGAGGTTAAATGTGAC 57.278 39.130 0.00 0.00 0.00 3.67
2811 3332 5.417580 GCTATTTGTGGGAGGTTAAATGTGA 59.582 40.000 0.00 0.00 0.00 3.58
2812 3333 5.650543 GCTATTTGTGGGAGGTTAAATGTG 58.349 41.667 0.00 0.00 0.00 3.21
2813 3334 4.398044 CGCTATTTGTGGGAGGTTAAATGT 59.602 41.667 0.00 0.00 0.00 2.71
2814 3335 4.733523 GCGCTATTTGTGGGAGGTTAAATG 60.734 45.833 0.00 0.00 0.00 2.32
2815 3336 3.380320 GCGCTATTTGTGGGAGGTTAAAT 59.620 43.478 0.00 0.00 0.00 1.40
2816 3337 2.750712 GCGCTATTTGTGGGAGGTTAAA 59.249 45.455 0.00 0.00 0.00 1.52
2817 3338 2.290387 TGCGCTATTTGTGGGAGGTTAA 60.290 45.455 9.73 0.00 0.00 2.01
2818 3339 1.279558 TGCGCTATTTGTGGGAGGTTA 59.720 47.619 9.73 0.00 0.00 2.85
2819 3340 0.037590 TGCGCTATTTGTGGGAGGTT 59.962 50.000 9.73 0.00 0.00 3.50
2820 3341 0.392998 CTGCGCTATTTGTGGGAGGT 60.393 55.000 9.73 0.00 0.00 3.85
2821 3342 1.718757 GCTGCGCTATTTGTGGGAGG 61.719 60.000 9.73 0.00 0.00 4.30
2822 3343 1.026182 TGCTGCGCTATTTGTGGGAG 61.026 55.000 9.73 0.00 0.00 4.30
2823 3344 0.607762 TTGCTGCGCTATTTGTGGGA 60.608 50.000 9.73 0.00 0.00 4.37
2824 3345 0.456653 GTTGCTGCGCTATTTGTGGG 60.457 55.000 9.73 0.00 0.00 4.61
2825 3346 0.240678 TGTTGCTGCGCTATTTGTGG 59.759 50.000 9.73 0.00 0.00 4.17
2826 3347 1.980844 CTTGTTGCTGCGCTATTTGTG 59.019 47.619 9.73 0.00 0.00 3.33
2827 3348 1.068333 CCTTGTTGCTGCGCTATTTGT 60.068 47.619 9.73 0.00 0.00 2.83
2828 3349 1.199789 TCCTTGTTGCTGCGCTATTTG 59.800 47.619 9.73 0.00 0.00 2.32
2829 3350 1.533625 TCCTTGTTGCTGCGCTATTT 58.466 45.000 9.73 0.00 0.00 1.40
2830 3351 1.200020 GTTCCTTGTTGCTGCGCTATT 59.800 47.619 9.73 0.00 0.00 1.73
2831 3352 0.804989 GTTCCTTGTTGCTGCGCTAT 59.195 50.000 9.73 0.00 0.00 2.97
2832 3353 0.533978 TGTTCCTTGTTGCTGCGCTA 60.534 50.000 9.73 0.00 0.00 4.26
2833 3354 1.383456 TTGTTCCTTGTTGCTGCGCT 61.383 50.000 9.73 0.00 0.00 5.92
2834 3355 0.527385 TTTGTTCCTTGTTGCTGCGC 60.527 50.000 0.00 0.00 0.00 6.09
2835 3356 1.919918 TTTTGTTCCTTGTTGCTGCG 58.080 45.000 0.00 0.00 0.00 5.18
2881 3402 4.326826 ACCTGATGTCCACTATGTTTGTG 58.673 43.478 0.00 0.00 35.39 3.33
2882 3403 4.640771 ACCTGATGTCCACTATGTTTGT 57.359 40.909 0.00 0.00 0.00 2.83
2883 3404 6.406370 TCTAACCTGATGTCCACTATGTTTG 58.594 40.000 0.00 0.00 0.00 2.93
2884 3405 6.620877 TCTAACCTGATGTCCACTATGTTT 57.379 37.500 0.00 0.00 0.00 2.83
2885 3406 6.586344 CATCTAACCTGATGTCCACTATGTT 58.414 40.000 0.00 0.00 39.05 2.71
2886 3407 6.166984 CATCTAACCTGATGTCCACTATGT 57.833 41.667 0.00 0.00 39.05 2.29
2896 3417 9.201127 CATAGTTATGTCACATCTAACCTGATG 57.799 37.037 0.00 0.00 46.61 3.07
2897 3418 8.928448 ACATAGTTATGTCACATCTAACCTGAT 58.072 33.333 0.00 0.00 42.96 2.90
2898 3419 8.306313 ACATAGTTATGTCACATCTAACCTGA 57.694 34.615 0.00 0.00 42.96 3.86
2926 3447 6.151985 GGGTGTGTCTAGGATACATCTAGATG 59.848 46.154 27.63 27.63 43.25 2.90
2927 3448 6.183361 TGGGTGTGTCTAGGATACATCTAGAT 60.183 42.308 0.00 0.00 43.25 1.98
2928 3449 5.133830 TGGGTGTGTCTAGGATACATCTAGA 59.866 44.000 0.00 0.00 40.38 2.43
2929 3450 5.386060 TGGGTGTGTCTAGGATACATCTAG 58.614 45.833 7.41 0.00 35.58 2.43
2930 3451 5.397553 TGGGTGTGTCTAGGATACATCTA 57.602 43.478 7.41 0.00 35.58 1.98
2931 3452 4.265856 TGGGTGTGTCTAGGATACATCT 57.734 45.455 7.41 0.00 35.58 2.90
2932 3453 5.552870 AATGGGTGTGTCTAGGATACATC 57.447 43.478 0.95 0.54 36.21 3.06
2933 3454 5.397899 CCAAATGGGTGTGTCTAGGATACAT 60.398 44.000 0.95 0.00 36.21 2.29
2934 3455 4.080582 CCAAATGGGTGTGTCTAGGATACA 60.081 45.833 0.00 0.00 41.41 2.29
2935 3456 4.451900 CCAAATGGGTGTGTCTAGGATAC 58.548 47.826 0.00 0.00 0.00 2.24
2936 3457 4.771114 CCAAATGGGTGTGTCTAGGATA 57.229 45.455 0.00 0.00 0.00 2.59
2937 3458 3.652057 CCAAATGGGTGTGTCTAGGAT 57.348 47.619 0.00 0.00 0.00 3.24
2951 3472 3.490348 ACAGAGAGACCCAAACCAAATG 58.510 45.455 0.00 0.00 0.00 2.32
2964 3485 5.897377 TGAACGTATCAATGACAGAGAGA 57.103 39.130 0.00 0.00 34.30 3.10
2981 3502 3.403613 TTCGGATTGCATGAATGAACG 57.596 42.857 0.00 0.00 0.00 3.95
2985 3506 7.809665 TCTACATAATTCGGATTGCATGAATG 58.190 34.615 6.25 0.51 32.91 2.67
2999 3520 9.262358 GGGTGTGAAGTTATCTCTACATAATTC 57.738 37.037 0.00 0.00 0.00 2.17
3021 3542 3.307480 CCAAAGGTCTAACAGTAGGGGTG 60.307 52.174 0.00 0.00 0.00 4.61
3022 3543 2.910977 CCAAAGGTCTAACAGTAGGGGT 59.089 50.000 0.00 0.00 0.00 4.95
3025 3546 3.695830 TGCCAAAGGTCTAACAGTAGG 57.304 47.619 0.00 0.00 0.00 3.18
3027 3548 4.041075 TGTGATGCCAAAGGTCTAACAGTA 59.959 41.667 0.00 0.00 0.00 2.74
3036 3557 0.185901 ACCAGTGTGATGCCAAAGGT 59.814 50.000 0.00 0.00 0.00 3.50
3069 3590 8.224389 GGTTTTCCTACTGTACTTTGGTTTAA 57.776 34.615 0.00 0.00 36.94 1.52
3087 3608 3.660501 AAAATCTCGGCAAGGTTTTCC 57.339 42.857 4.06 0.00 43.38 3.13
3092 3613 4.871933 ATTTCAAAAATCTCGGCAAGGT 57.128 36.364 0.00 0.00 0.00 3.50
3094 3615 4.448395 TGCAATTTCAAAAATCTCGGCAAG 59.552 37.500 0.00 0.00 0.00 4.01
3095 3616 4.375272 TGCAATTTCAAAAATCTCGGCAA 58.625 34.783 0.00 0.00 0.00 4.52
3096 3617 3.987547 TGCAATTTCAAAAATCTCGGCA 58.012 36.364 0.00 0.00 0.00 5.69
3097 3618 5.807011 AGTATGCAATTTCAAAAATCTCGGC 59.193 36.000 0.00 0.00 0.00 5.54
3098 3619 7.028962 TCAGTATGCAATTTCAAAAATCTCGG 58.971 34.615 0.00 0.00 34.76 4.63
3099 3620 8.451687 TTCAGTATGCAATTTCAAAAATCTCG 57.548 30.769 0.00 0.00 34.76 4.04
3104 3625 9.761504 TCTGAATTCAGTATGCAATTTCAAAAA 57.238 25.926 29.80 6.42 44.12 1.94
3179 3700 5.565045 GCGAAACTATCCTGACCGAATCTAT 60.565 44.000 0.00 0.00 0.00 1.98
3182 3707 2.795470 GCGAAACTATCCTGACCGAATC 59.205 50.000 0.00 0.00 0.00 2.52
3201 3726 1.872952 TCACCAAGTCATGAAACAGCG 59.127 47.619 0.00 0.00 0.00 5.18
3204 3729 3.141398 GAGCTCACCAAGTCATGAAACA 58.859 45.455 9.40 0.00 0.00 2.83
3215 3740 2.659016 CTGCCTCGAGCTCACCAA 59.341 61.111 15.40 0.00 44.23 3.67
3218 3743 4.154347 CCCCTGCCTCGAGCTCAC 62.154 72.222 15.40 0.08 44.23 3.51
3235 3760 3.240069 GCATTGAACAGACAATCAGTGC 58.760 45.455 7.36 7.36 46.92 4.40
3237 3762 4.139786 AGTGCATTGAACAGACAATCAGT 58.860 39.130 0.00 0.00 38.25 3.41
3238 3763 4.761235 AGTGCATTGAACAGACAATCAG 57.239 40.909 0.00 0.00 38.25 2.90
3239 3764 5.518848 AAAGTGCATTGAACAGACAATCA 57.481 34.783 0.00 0.00 38.25 2.57
3240 3765 5.750067 ACAAAAGTGCATTGAACAGACAATC 59.250 36.000 5.55 0.00 38.25 2.67
3241 3766 5.663456 ACAAAAGTGCATTGAACAGACAAT 58.337 33.333 5.55 0.00 40.50 2.71
3242 3767 5.070770 ACAAAAGTGCATTGAACAGACAA 57.929 34.783 5.55 0.00 0.00 3.18
3243 3768 4.717233 ACAAAAGTGCATTGAACAGACA 57.283 36.364 5.55 0.00 0.00 3.41
3244 3769 5.807011 AGAAACAAAAGTGCATTGAACAGAC 59.193 36.000 5.55 0.00 0.00 3.51
3245 3770 5.806502 CAGAAACAAAAGTGCATTGAACAGA 59.193 36.000 5.55 0.00 0.00 3.41
3246 3771 5.577945 ACAGAAACAAAAGTGCATTGAACAG 59.422 36.000 5.55 0.00 0.00 3.16
3247 3772 5.348179 CACAGAAACAAAAGTGCATTGAACA 59.652 36.000 5.55 0.00 0.00 3.18
3248 3773 5.348451 ACACAGAAACAAAAGTGCATTGAAC 59.652 36.000 5.55 0.00 35.47 3.18
3249 3774 5.477510 ACACAGAAACAAAAGTGCATTGAA 58.522 33.333 5.55 0.00 35.47 2.69
3250 3775 5.070770 ACACAGAAACAAAAGTGCATTGA 57.929 34.783 5.55 0.00 35.47 2.57
3251 3776 5.348179 TGAACACAGAAACAAAAGTGCATTG 59.652 36.000 0.00 0.00 35.47 2.82
3252 3777 5.477510 TGAACACAGAAACAAAAGTGCATT 58.522 33.333 0.00 0.00 35.47 3.56
3253 3778 5.070770 TGAACACAGAAACAAAAGTGCAT 57.929 34.783 0.00 0.00 35.47 3.96
3254 3779 4.022416 ACTGAACACAGAAACAAAAGTGCA 60.022 37.500 0.00 0.00 35.47 4.57
3255 3780 4.485163 ACTGAACACAGAAACAAAAGTGC 58.515 39.130 0.00 0.00 35.47 4.40
3256 3781 7.168972 TCAAAACTGAACACAGAAACAAAAGTG 59.831 33.333 0.00 0.00 37.95 3.16
3257 3782 7.206687 TCAAAACTGAACACAGAAACAAAAGT 58.793 30.769 0.00 0.00 35.80 2.66
3258 3783 7.594758 TCTCAAAACTGAACACAGAAACAAAAG 59.405 33.333 0.00 0.00 35.80 2.27
3259 3784 7.429633 TCTCAAAACTGAACACAGAAACAAAA 58.570 30.769 0.00 0.00 35.80 2.44
3260 3785 6.976088 TCTCAAAACTGAACACAGAAACAAA 58.024 32.000 0.00 0.00 35.80 2.83
3261 3786 6.567687 TCTCAAAACTGAACACAGAAACAA 57.432 33.333 0.00 0.00 35.80 2.83
3262 3787 6.567687 TTCTCAAAACTGAACACAGAAACA 57.432 33.333 0.00 0.00 35.80 2.83
3263 3788 6.020360 GCATTCTCAAAACTGAACACAGAAAC 60.020 38.462 0.00 0.00 35.80 2.78
3264 3789 6.035843 GCATTCTCAAAACTGAACACAGAAA 58.964 36.000 0.00 0.00 35.80 2.52
3265 3790 5.450412 GGCATTCTCAAAACTGAACACAGAA 60.450 40.000 0.00 0.00 35.80 3.02
3266 3791 4.036734 GGCATTCTCAAAACTGAACACAGA 59.963 41.667 0.00 0.00 35.80 3.41
3267 3792 4.202040 TGGCATTCTCAAAACTGAACACAG 60.202 41.667 0.00 0.00 37.63 3.66
3268 3793 3.698539 TGGCATTCTCAAAACTGAACACA 59.301 39.130 0.00 0.00 0.00 3.72
3269 3794 4.305989 TGGCATTCTCAAAACTGAACAC 57.694 40.909 0.00 0.00 0.00 3.32
3270 3795 4.998671 TTGGCATTCTCAAAACTGAACA 57.001 36.364 0.00 0.00 0.00 3.18
3271 3796 5.232838 CACTTTGGCATTCTCAAAACTGAAC 59.767 40.000 0.00 0.00 34.26 3.18
3272 3797 5.350633 CACTTTGGCATTCTCAAAACTGAA 58.649 37.500 0.00 0.00 34.26 3.02
3273 3798 4.202141 CCACTTTGGCATTCTCAAAACTGA 60.202 41.667 0.00 0.00 34.26 3.41
3274 3799 4.053295 CCACTTTGGCATTCTCAAAACTG 58.947 43.478 0.00 0.00 34.26 3.16
3275 3800 3.706086 ACCACTTTGGCATTCTCAAAACT 59.294 39.130 0.00 0.00 42.67 2.66
3276 3801 4.051237 GACCACTTTGGCATTCTCAAAAC 58.949 43.478 0.00 0.00 42.67 2.43
3277 3802 3.703556 TGACCACTTTGGCATTCTCAAAA 59.296 39.130 0.00 0.00 42.67 2.44
3278 3803 3.068024 GTGACCACTTTGGCATTCTCAAA 59.932 43.478 0.00 0.00 42.67 2.69
3279 3804 2.622942 GTGACCACTTTGGCATTCTCAA 59.377 45.455 0.00 0.00 42.67 3.02
3280 3805 2.158623 AGTGACCACTTTGGCATTCTCA 60.159 45.455 0.00 0.00 42.67 3.27
3281 3806 2.227388 CAGTGACCACTTTGGCATTCTC 59.773 50.000 0.00 0.00 42.67 2.87
3282 3807 2.233271 CAGTGACCACTTTGGCATTCT 58.767 47.619 0.00 0.00 42.67 2.40
3283 3808 1.336240 GCAGTGACCACTTTGGCATTC 60.336 52.381 0.00 0.00 42.67 2.67
3284 3809 0.675633 GCAGTGACCACTTTGGCATT 59.324 50.000 0.00 0.00 42.67 3.56
3285 3810 1.518056 CGCAGTGACCACTTTGGCAT 61.518 55.000 0.00 0.00 42.67 4.40
3286 3811 2.186160 CGCAGTGACCACTTTGGCA 61.186 57.895 0.00 0.00 42.67 4.92
3287 3812 2.639286 CGCAGTGACCACTTTGGC 59.361 61.111 0.00 0.82 42.67 4.52
3288 3813 1.525995 ACCGCAGTGACCACTTTGG 60.526 57.895 13.08 13.08 45.02 3.28
3289 3814 4.141144 ACCGCAGTGACCACTTTG 57.859 55.556 0.00 0.00 40.20 2.77
3298 3823 3.876914 ACATAATACAATCCACCGCAGTG 59.123 43.478 0.00 0.00 44.12 3.66
3299 3824 4.127171 GACATAATACAATCCACCGCAGT 58.873 43.478 0.00 0.00 0.00 4.40
3323 3848 6.828273 TGTTCCCAATTCTTATCACATACCAG 59.172 38.462 0.00 0.00 0.00 4.00
3341 3866 4.020662 GGTGGCAAAAGAATAATGTTCCCA 60.021 41.667 0.00 0.00 0.00 4.37
3343 3868 4.020662 TGGGTGGCAAAAGAATAATGTTCC 60.021 41.667 0.00 0.00 0.00 3.62
3352 3877 2.247358 GAATCCTGGGTGGCAAAAGAA 58.753 47.619 0.00 0.00 35.26 2.52
3373 3898 1.936547 CATAGCTTTTCACGGAGCTCC 59.063 52.381 23.79 23.79 45.68 4.70
3384 3909 5.975988 TCTTCATACCTCCCATAGCTTTT 57.024 39.130 0.00 0.00 0.00 2.27
3418 3943 4.892934 AGGTGACAAAATGGTAAAAGCAGA 59.107 37.500 0.00 0.00 0.00 4.26
3421 3946 5.195001 TCAGGTGACAAAATGGTAAAAGC 57.805 39.130 0.00 0.00 0.00 3.51
3428 3953 7.227116 ACAAATCAAATTCAGGTGACAAAATGG 59.773 33.333 0.00 0.00 0.00 3.16
3487 4012 9.965824 GGTGCTTGCTAATTGTATTAATATGTT 57.034 29.630 0.00 0.00 0.00 2.71
3496 4021 9.745018 AGATAATATGGTGCTTGCTAATTGTAT 57.255 29.630 0.00 0.00 0.00 2.29
3498 4023 9.573166 TTAGATAATATGGTGCTTGCTAATTGT 57.427 29.630 0.00 0.00 0.00 2.71
3524 4049 2.917227 CACCGGGCTGCCCTTTTT 60.917 61.111 33.39 13.23 42.67 1.94
3530 4055 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
3531 4056 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
3532 4057 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
3541 4066 9.653287 TTAAGTAGATAATATGGTGCTACATGC 57.347 33.333 0.00 0.00 43.25 4.06
3594 4119 3.081061 TGCGAGGAAGCAAAACATACAT 58.919 40.909 0.00 0.00 45.06 2.29
3610 4135 0.951040 GAACACCAGGAACCTGCGAG 60.951 60.000 14.66 9.00 42.35 5.03
3613 4138 0.890996 CAGGAACACCAGGAACCTGC 60.891 60.000 14.66 1.71 42.35 4.85
3614 4139 3.329300 CAGGAACACCAGGAACCTG 57.671 57.895 13.32 13.32 43.26 4.00
3617 4142 2.568623 ATCACAGGAACACCAGGAAC 57.431 50.000 0.00 0.00 0.00 3.62
3624 4149 6.161855 TCAGACCATATATCACAGGAACAC 57.838 41.667 0.00 0.00 0.00 3.32
3637 4162 6.380079 AACAAGGAGTTCTTCAGACCATAT 57.620 37.500 0.00 0.00 34.74 1.78
3652 4177 2.886523 TGGTTGCTCAATGAACAAGGAG 59.113 45.455 0.00 0.00 0.00 3.69
3653 4178 2.942804 TGGTTGCTCAATGAACAAGGA 58.057 42.857 0.00 0.00 0.00 3.36
3654 4179 3.947910 ATGGTTGCTCAATGAACAAGG 57.052 42.857 0.00 0.00 0.00 3.61
3671 4196 2.549754 ACTGACTTTGCTGAACGAATGG 59.450 45.455 0.00 0.00 0.00 3.16
3712 4237 7.581011 ATTCGGATTTTTCAATAAGTTGCAC 57.419 32.000 0.00 0.00 35.26 4.57
3733 4259 6.823689 TGAGTCATGGGTAGCTTCTTAAATTC 59.176 38.462 0.00 0.00 0.00 2.17
3748 4274 2.276869 TGACGTCCTGAGTCATGGG 58.723 57.895 14.12 0.00 42.91 4.00
3767 4293 2.744202 CAACAGATGTCTTTCCTTCGGG 59.256 50.000 0.00 0.00 0.00 5.14
3786 4312 4.460034 CCACATCATGTCTGTTTCCATCAA 59.540 41.667 0.00 0.00 0.00 2.57
3787 4313 4.011698 CCACATCATGTCTGTTTCCATCA 58.988 43.478 0.00 0.00 0.00 3.07
3788 4314 3.181493 GCCACATCATGTCTGTTTCCATC 60.181 47.826 0.00 0.00 0.00 3.51
3798 4324 5.953183 TGTTTTTCTATGCCACATCATGTC 58.047 37.500 0.00 0.00 0.00 3.06
3819 4345 5.036117 TGCTCTGTTCCTTCTAAACTTGT 57.964 39.130 0.00 0.00 0.00 3.16
3836 4362 4.625963 AGGGAGATACTAACCTTTGCTCT 58.374 43.478 0.00 0.00 0.00 4.09
3855 4381 5.608860 AGGTCTTCTATTTAGGAATGGAGGG 59.391 44.000 0.00 0.00 34.72 4.30
3856 4382 6.755542 AGGTCTTCTATTTAGGAATGGAGG 57.244 41.667 0.00 0.00 34.72 4.30
3908 4434 9.553064 GGAGGGAGTATATATCATTTTGCTATG 57.447 37.037 0.00 0.00 0.00 2.23
3909 4435 8.424918 CGGAGGGAGTATATATCATTTTGCTAT 58.575 37.037 0.00 0.00 0.00 2.97
3910 4436 7.399191 ACGGAGGGAGTATATATCATTTTGCTA 59.601 37.037 0.00 0.00 0.00 3.49
3911 4437 6.213600 ACGGAGGGAGTATATATCATTTTGCT 59.786 38.462 0.00 0.00 0.00 3.91
3912 4438 6.407202 ACGGAGGGAGTATATATCATTTTGC 58.593 40.000 0.00 0.00 0.00 3.68
3913 4439 7.549488 GGAACGGAGGGAGTATATATCATTTTG 59.451 40.741 0.00 0.00 0.00 2.44
3914 4440 7.236847 TGGAACGGAGGGAGTATATATCATTTT 59.763 37.037 0.00 0.00 0.00 1.82
3915 4441 6.729100 TGGAACGGAGGGAGTATATATCATTT 59.271 38.462 0.00 0.00 0.00 2.32
3916 4442 6.261435 TGGAACGGAGGGAGTATATATCATT 58.739 40.000 0.00 0.00 0.00 2.57
3917 4443 5.838955 TGGAACGGAGGGAGTATATATCAT 58.161 41.667 0.00 0.00 0.00 2.45
3918 4444 5.265290 TGGAACGGAGGGAGTATATATCA 57.735 43.478 0.00 0.00 0.00 2.15
3919 4445 6.600882 TTTGGAACGGAGGGAGTATATATC 57.399 41.667 0.00 0.00 0.00 1.63
3920 4446 7.569599 ATTTTGGAACGGAGGGAGTATATAT 57.430 36.000 0.00 0.00 0.00 0.86
3921 4447 7.951806 TCTATTTTGGAACGGAGGGAGTATATA 59.048 37.037 0.00 0.00 0.00 0.86
3922 4448 5.906772 ATTTTGGAACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
3923 4449 6.138263 TCTATTTTGGAACGGAGGGAGTATA 58.862 40.000 0.00 0.00 0.00 1.47
3924 4450 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
3925 4451 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
3926 4452 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
3927 4453 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3928 4454 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3929 4455 4.150897 TCATCTATTTTGGAACGGAGGG 57.849 45.455 0.00 0.00 0.00 4.30
3930 4456 5.822519 TGAATCATCTATTTTGGAACGGAGG 59.177 40.000 0.00 0.00 0.00 4.30
3931 4457 6.925610 TGAATCATCTATTTTGGAACGGAG 57.074 37.500 0.00 0.00 0.00 4.63
3932 4458 6.884295 AGTTGAATCATCTATTTTGGAACGGA 59.116 34.615 0.00 0.00 0.00 4.69
3933 4459 7.088589 AGTTGAATCATCTATTTTGGAACGG 57.911 36.000 0.00 0.00 0.00 4.44
3934 4460 8.970691 AAAGTTGAATCATCTATTTTGGAACG 57.029 30.769 0.00 0.00 0.00 3.95
3970 4496 9.430399 ACCCAGCTCTATACTAATTTTGTACTA 57.570 33.333 0.00 0.00 0.00 1.82
3971 4497 8.320338 ACCCAGCTCTATACTAATTTTGTACT 57.680 34.615 0.00 0.00 0.00 2.73
3972 4498 8.202137 TGACCCAGCTCTATACTAATTTTGTAC 58.798 37.037 0.00 0.00 0.00 2.90
3973 4499 8.313944 TGACCCAGCTCTATACTAATTTTGTA 57.686 34.615 0.00 0.00 0.00 2.41
3974 4500 7.195374 TGACCCAGCTCTATACTAATTTTGT 57.805 36.000 0.00 0.00 0.00 2.83
3975 4501 8.153550 AGATGACCCAGCTCTATACTAATTTTG 58.846 37.037 0.00 0.00 0.00 2.44
3976 4502 8.268878 AGATGACCCAGCTCTATACTAATTTT 57.731 34.615 0.00 0.00 0.00 1.82
3977 4503 7.863901 AGATGACCCAGCTCTATACTAATTT 57.136 36.000 0.00 0.00 0.00 1.82
3978 4504 9.554053 AATAGATGACCCAGCTCTATACTAATT 57.446 33.333 0.00 0.00 32.41 1.40
3979 4505 9.554053 AAATAGATGACCCAGCTCTATACTAAT 57.446 33.333 0.00 0.00 32.41 1.73
3980 4506 8.958060 AAATAGATGACCCAGCTCTATACTAA 57.042 34.615 0.00 0.00 32.41 2.24
3981 4507 8.958060 AAAATAGATGACCCAGCTCTATACTA 57.042 34.615 0.00 0.00 32.41 1.82
3982 4508 7.863901 AAAATAGATGACCCAGCTCTATACT 57.136 36.000 0.00 0.00 32.41 2.12
3983 4509 9.026121 TCTAAAATAGATGACCCAGCTCTATAC 57.974 37.037 0.00 0.00 32.41 1.47
3984 4510 9.601810 TTCTAAAATAGATGACCCAGCTCTATA 57.398 33.333 0.00 0.00 32.41 1.31
3985 4511 8.371699 GTTCTAAAATAGATGACCCAGCTCTAT 58.628 37.037 0.00 0.00 34.47 1.98
3986 4512 7.470147 CGTTCTAAAATAGATGACCCAGCTCTA 60.470 40.741 0.00 0.00 34.22 2.43
3987 4513 6.587273 GTTCTAAAATAGATGACCCAGCTCT 58.413 40.000 0.00 0.00 34.22 4.09
3988 4514 5.463724 CGTTCTAAAATAGATGACCCAGCTC 59.536 44.000 0.00 0.00 34.22 4.09
3989 4515 5.360591 CGTTCTAAAATAGATGACCCAGCT 58.639 41.667 0.00 0.00 34.22 4.24
3990 4516 4.511826 CCGTTCTAAAATAGATGACCCAGC 59.488 45.833 0.00 0.00 34.22 4.85
3991 4517 5.914033 TCCGTTCTAAAATAGATGACCCAG 58.086 41.667 0.00 0.00 34.22 4.45
3992 4518 5.163343 CCTCCGTTCTAAAATAGATGACCCA 60.163 44.000 0.00 0.00 34.22 4.51
3993 4519 5.298347 CCTCCGTTCTAAAATAGATGACCC 58.702 45.833 0.00 0.00 34.22 4.46
3994 4520 5.070047 TCCCTCCGTTCTAAAATAGATGACC 59.930 44.000 0.00 0.00 34.22 4.02
3995 4521 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
3996 4522 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
3997 4523 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
3998 4524 9.771140 ATATACTCCCTCCGTTCTAAAATAGAT 57.229 33.333 0.00 0.00 34.22 1.98
3999 4525 9.240734 GATATACTCCCTCCGTTCTAAAATAGA 57.759 37.037 0.00 0.00 0.00 1.98
4000 4526 9.245481 AGATATACTCCCTCCGTTCTAAAATAG 57.755 37.037 0.00 0.00 0.00 1.73
4001 4527 9.021807 CAGATATACTCCCTCCGTTCTAAAATA 57.978 37.037 0.00 0.00 0.00 1.40
4002 4528 7.509659 ACAGATATACTCCCTCCGTTCTAAAAT 59.490 37.037 0.00 0.00 0.00 1.82
4003 4529 6.837568 ACAGATATACTCCCTCCGTTCTAAAA 59.162 38.462 0.00 0.00 0.00 1.52
4004 4530 6.371278 ACAGATATACTCCCTCCGTTCTAAA 58.629 40.000 0.00 0.00 0.00 1.85
4005 4531 5.950023 ACAGATATACTCCCTCCGTTCTAA 58.050 41.667 0.00 0.00 0.00 2.10
4006 4532 5.579753 ACAGATATACTCCCTCCGTTCTA 57.420 43.478 0.00 0.00 0.00 2.10
4007 4533 4.456662 ACAGATATACTCCCTCCGTTCT 57.543 45.455 0.00 0.00 0.00 3.01
4008 4534 9.275398 CTATATACAGATATACTCCCTCCGTTC 57.725 40.741 0.00 0.00 30.57 3.95
4009 4535 8.780003 ACTATATACAGATATACTCCCTCCGTT 58.220 37.037 0.00 0.00 30.57 4.44
4010 4536 8.334522 ACTATATACAGATATACTCCCTCCGT 57.665 38.462 0.00 0.00 30.57 4.69
4011 4537 7.879160 GGACTATATACAGATATACTCCCTCCG 59.121 44.444 0.00 0.00 32.51 4.63
4012 4538 8.725256 TGGACTATATACAGATATACTCCCTCC 58.275 40.741 0.00 0.00 35.06 4.30
4023 4549 9.486123 AGATTGCACTATGGACTATATACAGAT 57.514 33.333 0.00 0.00 0.00 2.90
4024 4550 8.885693 AGATTGCACTATGGACTATATACAGA 57.114 34.615 0.00 0.00 0.00 3.41
4025 4551 8.965819 AGAGATTGCACTATGGACTATATACAG 58.034 37.037 0.00 0.00 0.00 2.74
4026 4552 8.885693 AGAGATTGCACTATGGACTATATACA 57.114 34.615 0.00 0.00 0.00 2.29
4031 4557 8.153550 CCTTTTAGAGATTGCACTATGGACTAT 58.846 37.037 0.00 0.00 0.00 2.12
4032 4558 7.125811 ACCTTTTAGAGATTGCACTATGGACTA 59.874 37.037 0.00 0.00 0.00 2.59
4033 4559 6.069963 ACCTTTTAGAGATTGCACTATGGACT 60.070 38.462 0.00 0.00 0.00 3.85
4034 4560 6.116126 ACCTTTTAGAGATTGCACTATGGAC 58.884 40.000 0.00 0.00 0.00 4.02
4035 4561 6.156949 AGACCTTTTAGAGATTGCACTATGGA 59.843 38.462 0.00 0.00 0.00 3.41
4036 4562 6.352516 AGACCTTTTAGAGATTGCACTATGG 58.647 40.000 0.00 0.00 0.00 2.74
4037 4563 7.856145 AAGACCTTTTAGAGATTGCACTATG 57.144 36.000 0.00 0.00 0.00 2.23
4052 4578 7.991460 CCTCCGTTCCTAAATATAAGACCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4053 4579 7.419865 CCCTCCGTTCCTAAATATAAGACCTTT 60.420 40.741 0.00 0.00 0.00 3.11
4054 4580 6.042897 CCCTCCGTTCCTAAATATAAGACCTT 59.957 42.308 0.00 0.00 0.00 3.50
4055 4581 5.543020 CCCTCCGTTCCTAAATATAAGACCT 59.457 44.000 0.00 0.00 0.00 3.85
4056 4582 5.541484 TCCCTCCGTTCCTAAATATAAGACC 59.459 44.000 0.00 0.00 0.00 3.85
4057 4583 6.267242 ACTCCCTCCGTTCCTAAATATAAGAC 59.733 42.308 0.00 0.00 0.00 3.01
4058 4584 6.379579 ACTCCCTCCGTTCCTAAATATAAGA 58.620 40.000 0.00 0.00 0.00 2.10
4059 4585 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4060 4586 9.247861 GTATACTCCCTCCGTTCCTAAATATAA 57.752 37.037 0.00 0.00 0.00 0.98
4061 4587 8.393259 TGTATACTCCCTCCGTTCCTAAATATA 58.607 37.037 4.17 0.00 0.00 0.86
4062 4588 7.243824 TGTATACTCCCTCCGTTCCTAAATAT 58.756 38.462 4.17 0.00 0.00 1.28
4063 4589 6.613699 TGTATACTCCCTCCGTTCCTAAATA 58.386 40.000 4.17 0.00 0.00 1.40
4064 4590 5.461327 TGTATACTCCCTCCGTTCCTAAAT 58.539 41.667 4.17 0.00 0.00 1.40
4065 4591 4.870636 TGTATACTCCCTCCGTTCCTAAA 58.129 43.478 4.17 0.00 0.00 1.85
4066 4592 4.524802 TGTATACTCCCTCCGTTCCTAA 57.475 45.455 4.17 0.00 0.00 2.69
4067 4593 4.079558 AGTTGTATACTCCCTCCGTTCCTA 60.080 45.833 4.17 0.00 28.23 2.94
4068 4594 3.029570 GTTGTATACTCCCTCCGTTCCT 58.970 50.000 4.17 0.00 0.00 3.36
4069 4595 3.029570 AGTTGTATACTCCCTCCGTTCC 58.970 50.000 4.17 0.00 28.23 3.62
4070 4596 4.886489 AGTAGTTGTATACTCCCTCCGTTC 59.114 45.833 4.17 0.00 38.33 3.95
4071 4597 4.643784 CAGTAGTTGTATACTCCCTCCGTT 59.356 45.833 4.17 0.00 38.33 4.44
4072 4598 4.205587 CAGTAGTTGTATACTCCCTCCGT 58.794 47.826 4.17 0.00 38.33 4.69
4073 4599 4.205587 ACAGTAGTTGTATACTCCCTCCG 58.794 47.826 4.17 0.00 38.56 4.63
4074 4600 6.541934 AAACAGTAGTTGTATACTCCCTCC 57.458 41.667 4.17 0.00 39.73 4.30
4075 4601 7.040494 GGAAAACAGTAGTTGTATACTCCCTC 58.960 42.308 4.17 0.00 39.73 4.30
4076 4602 6.499350 TGGAAAACAGTAGTTGTATACTCCCT 59.501 38.462 4.17 0.13 39.73 4.20
4077 4603 6.704310 TGGAAAACAGTAGTTGTATACTCCC 58.296 40.000 4.17 0.00 39.73 4.30
4078 4604 8.092687 TCTTGGAAAACAGTAGTTGTATACTCC 58.907 37.037 4.17 0.00 39.73 3.85
4079 4605 9.654663 ATCTTGGAAAACAGTAGTTGTATACTC 57.345 33.333 4.17 0.00 39.73 2.59
4099 4625 7.013823 AGATCATAACCATGGAGTATCTTGG 57.986 40.000 21.47 4.17 41.87 3.61
4131 4657 7.629157 TGATCTCAAAATATTGACTACACCCA 58.371 34.615 0.00 0.00 40.59 4.51
4158 4684 4.612932 ATTTTTCTTGCGAGAGAGATGC 57.387 40.909 3.32 0.00 32.44 3.91
4175 4702 1.548719 GGTCGGGCTTGGCTTTATTTT 59.451 47.619 0.00 0.00 0.00 1.82
4179 4706 1.302993 GTGGTCGGGCTTGGCTTTA 60.303 57.895 0.00 0.00 0.00 1.85
4180 4707 2.597510 GTGGTCGGGCTTGGCTTT 60.598 61.111 0.00 0.00 0.00 3.51
4185 4712 4.263572 TGGTGGTGGTCGGGCTTG 62.264 66.667 0.00 0.00 0.00 4.01
4192 4719 1.541588 GATTTTGAGCTGGTGGTGGTC 59.458 52.381 0.00 0.00 0.00 4.02
4194 4721 1.542915 CTGATTTTGAGCTGGTGGTGG 59.457 52.381 0.00 0.00 0.00 4.61
4196 4723 2.664402 ACTGATTTTGAGCTGGTGGT 57.336 45.000 0.00 0.00 0.00 4.16
4197 4724 5.183713 TGATTAACTGATTTTGAGCTGGTGG 59.816 40.000 0.00 0.00 0.00 4.61
4198 4725 6.258230 TGATTAACTGATTTTGAGCTGGTG 57.742 37.500 0.00 0.00 0.00 4.17
4199 4726 6.899393 TTGATTAACTGATTTTGAGCTGGT 57.101 33.333 0.00 0.00 0.00 4.00
4200 4727 7.541162 TGATTGATTAACTGATTTTGAGCTGG 58.459 34.615 0.00 0.00 0.00 4.85
4201 4728 9.020813 CATGATTGATTAACTGATTTTGAGCTG 57.979 33.333 0.00 0.00 0.00 4.24
4202 4729 8.195436 CCATGATTGATTAACTGATTTTGAGCT 58.805 33.333 0.00 0.00 0.00 4.09
4240 4768 7.524717 AGTGTTCCAAGCATTTACACTTATT 57.475 32.000 0.00 0.00 45.05 1.40
4263 4791 7.605691 ACATTGAAAGAGATCCTACAGTGAAAG 59.394 37.037 0.00 0.00 0.00 2.62
4267 4795 6.652481 ACAACATTGAAAGAGATCCTACAGTG 59.348 38.462 0.00 0.00 0.00 3.66
4275 4803 8.801715 TTGCTTTTACAACATTGAAAGAGATC 57.198 30.769 9.01 0.00 0.00 2.75
4304 4832 5.263599 ACCTCAAGATGTTATGCAATTCCA 58.736 37.500 0.00 0.00 0.00 3.53
4315 4843 6.598064 CCCTTCGTTATAAACCTCAAGATGTT 59.402 38.462 0.00 0.00 0.00 2.71
4331 4859 1.901833 GGTCCACCTTACCCTTCGTTA 59.098 52.381 0.00 0.00 0.00 3.18
4335 4863 1.652947 TCTGGTCCACCTTACCCTTC 58.347 55.000 0.00 0.00 36.06 3.46
4346 4874 3.786368 TGTCACATCATTTCTGGTCCA 57.214 42.857 0.00 0.00 0.00 4.02
4351 4879 7.142306 AGATTCAGTTGTCACATCATTTCTG 57.858 36.000 0.00 0.00 0.00 3.02
4352 4880 7.756395 AAGATTCAGTTGTCACATCATTTCT 57.244 32.000 0.00 0.00 0.00 2.52
4359 4887 6.712095 TGAAGCTAAAGATTCAGTTGTCACAT 59.288 34.615 6.57 0.00 44.35 3.21
4393 4921 3.888930 CACATTCAACCCACCTAGTTTGT 59.111 43.478 0.00 0.00 0.00 2.83
4401 4929 0.968405 ATGTGCACATTCAACCCACC 59.032 50.000 26.61 0.00 31.37 4.61
4402 4930 3.932545 TTATGTGCACATTCAACCCAC 57.067 42.857 35.45 0.00 37.76 4.61
4403 4931 6.830838 TGTATATTATGTGCACATTCAACCCA 59.169 34.615 35.45 21.94 37.76 4.51
4423 4951 2.093075 TCGGCCCATTTTCGGTTGTATA 60.093 45.455 0.00 0.00 0.00 1.47
4517 5045 7.392113 ACCTCCGAATGTAAACATCACATTTTA 59.608 33.333 2.54 0.00 44.55 1.52
4557 5085 4.335315 TGCCGATGCAACTTCTTAATTAGG 59.665 41.667 0.00 0.00 46.66 2.69
4576 5104 6.607689 TGTAAATTGATGTTCTTTAGTGCCG 58.392 36.000 0.00 0.00 0.00 5.69
4577 5105 8.462016 AGATGTAAATTGATGTTCTTTAGTGCC 58.538 33.333 0.00 0.00 0.00 5.01
4600 5128 8.924511 TCCACAATTTTTGAGTTCTCTTAGAT 57.075 30.769 1.53 0.00 0.00 1.98
4601 5129 7.445402 CCTCCACAATTTTTGAGTTCTCTTAGA 59.555 37.037 1.53 0.00 0.00 2.10
4650 5178 5.951747 CCTCACCCAATATTCTCCTTGAAAA 59.048 40.000 0.00 0.00 38.29 2.29
4660 5188 8.697507 AAAACTCATATCCTCACCCAATATTC 57.302 34.615 0.00 0.00 0.00 1.75
4665 5193 5.339200 GGAGAAAACTCATATCCTCACCCAA 60.339 44.000 0.00 0.00 0.00 4.12
4670 5198 5.163163 CCCATGGAGAAAACTCATATCCTCA 60.163 44.000 15.22 0.00 0.00 3.86
4680 5208 3.307480 CGTACTTCCCCATGGAGAAAACT 60.307 47.826 15.22 0.00 43.07 2.66
4681 5209 3.007635 CGTACTTCCCCATGGAGAAAAC 58.992 50.000 15.22 11.74 43.07 2.43
4682 5210 2.026636 CCGTACTTCCCCATGGAGAAAA 60.027 50.000 15.22 0.00 43.07 2.29
4683 5211 1.557832 CCGTACTTCCCCATGGAGAAA 59.442 52.381 15.22 3.21 43.07 2.52
4684 5212 1.200519 CCGTACTTCCCCATGGAGAA 58.799 55.000 15.22 11.54 43.07 2.87
4685 5213 0.042131 ACCGTACTTCCCCATGGAGA 59.958 55.000 15.22 1.04 43.07 3.71
4686 5214 0.464452 GACCGTACTTCCCCATGGAG 59.536 60.000 15.22 5.19 43.07 3.86
4687 5215 0.042131 AGACCGTACTTCCCCATGGA 59.958 55.000 15.22 0.00 39.54 3.41
4688 5216 0.464452 GAGACCGTACTTCCCCATGG 59.536 60.000 4.14 4.14 0.00 3.66
4689 5217 0.464452 GGAGACCGTACTTCCCCATG 59.536 60.000 0.00 0.00 0.00 3.66
4690 5218 0.690077 GGGAGACCGTACTTCCCCAT 60.690 60.000 9.33 0.00 43.64 4.00
4691 5219 1.305549 GGGAGACCGTACTTCCCCA 60.306 63.158 9.33 0.00 43.64 4.96
4692 5220 3.626394 GGGAGACCGTACTTCCCC 58.374 66.667 9.33 6.36 43.64 4.81
4714 5242 3.601685 AAAAGGGCCCGTGCGTTG 61.602 61.111 18.44 0.00 38.85 4.10
4715 5243 3.601685 CAAAAGGGCCCGTGCGTT 61.602 61.111 18.44 0.59 38.85 4.84
4718 5246 2.675075 TAGCAAAAGGGCCCGTGC 60.675 61.111 30.21 30.21 37.26 5.34
4719 5247 1.303317 ACTAGCAAAAGGGCCCGTG 60.303 57.895 18.44 17.24 0.00 4.94
4720 5248 1.002502 GACTAGCAAAAGGGCCCGT 60.003 57.895 18.44 11.44 0.00 5.28
4721 5249 0.744771 GAGACTAGCAAAAGGGCCCG 60.745 60.000 18.44 2.33 0.00 6.13
4722 5250 0.621082 AGAGACTAGCAAAAGGGCCC 59.379 55.000 16.46 16.46 0.00 5.80
4723 5251 1.407575 GGAGAGACTAGCAAAAGGGCC 60.408 57.143 0.00 0.00 0.00 5.80
4724 5252 1.407575 GGGAGAGACTAGCAAAAGGGC 60.408 57.143 0.00 0.00 0.00 5.19
4725 5253 2.192263 AGGGAGAGACTAGCAAAAGGG 58.808 52.381 0.00 0.00 0.00 3.95
4726 5254 5.622346 ATTAGGGAGAGACTAGCAAAAGG 57.378 43.478 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.