Multiple sequence alignment - TraesCS2A01G228900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G228900 chr2A 100.000 2679 0 0 1 2679 256197982 256200660 0.000000e+00 4948.0
1 TraesCS2A01G228900 chr2A 96.707 668 11 8 1 659 20346708 20346043 0.000000e+00 1101.0
2 TraesCS2A01G228900 chr2A 99.023 512 5 0 690 1201 668073820 668074331 0.000000e+00 918.0
3 TraesCS2A01G228900 chr2A 90.647 139 13 0 529 667 740735795 740735933 4.550000e-43 185.0
4 TraesCS2A01G228900 chr2B 98.583 1482 18 1 1198 2679 150352023 150350545 0.000000e+00 2617.0
5 TraesCS2A01G228900 chr2B 83.884 242 18 7 1477 1697 793125443 793125684 7.510000e-51 211.0
6 TraesCS2A01G228900 chr2B 93.519 108 7 0 1695 1802 357169218 357169325 7.680000e-36 161.0
7 TraesCS2A01G228900 chr2B 81.897 116 18 3 562 677 357161103 357161215 7.900000e-16 95.3
8 TraesCS2A01G228900 chr5A 99.564 1147 5 0 674 1820 139485125 139483979 0.000000e+00 2091.0
9 TraesCS2A01G228900 chr5A 99.591 977 4 0 1703 2679 139483955 139482979 0.000000e+00 1783.0
10 TraesCS2A01G228900 chr5A 86.713 143 16 3 529 670 28621134 28621274 3.570000e-34 156.0
11 TraesCS2A01G228900 chr6B 97.669 1201 9 2 1 1201 21193416 21194597 0.000000e+00 2045.0
12 TraesCS2A01G228900 chr6B 86.572 283 29 8 661 936 21185260 21185540 1.210000e-78 303.0
13 TraesCS2A01G228900 chr6B 85.911 291 29 11 655 936 21198552 21198839 1.560000e-77 300.0
14 TraesCS2A01G228900 chr6B 93.143 175 7 2 1 175 690991596 690991427 4.430000e-63 252.0
15 TraesCS2A01G228900 chr6B 86.404 228 22 6 1479 1697 282851039 282851266 9.580000e-60 241.0
16 TraesCS2A01G228900 chr6B 83.058 242 20 7 1477 1697 690993465 690993224 1.630000e-47 200.0
17 TraesCS2A01G228900 chr6B 89.394 132 12 1 529 660 21204900 21205029 5.930000e-37 165.0
18 TraesCS2A01G228900 chr6B 89.815 108 9 1 1695 1802 520330840 520330945 1.290000e-28 137.0
19 TraesCS2A01G228900 chr6B 79.054 148 6 7 1743 1878 547719953 547720087 7.950000e-11 78.7
20 TraesCS2A01G228900 chr6B 82.192 73 3 1 1816 1878 520330946 520331018 1.000000e-03 54.7
21 TraesCS2A01G228900 chr3B 99.537 864 4 0 1816 2679 536903647 536902784 0.000000e+00 1574.0
22 TraesCS2A01G228900 chr3B 99.357 622 4 0 1198 1819 536904387 536903766 0.000000e+00 1127.0
23 TraesCS2A01G228900 chr3B 97.628 548 6 6 661 1201 787251637 787251090 0.000000e+00 933.0
24 TraesCS2A01G228900 chr3B 97.505 521 10 1 684 1201 1270558 1270038 0.000000e+00 887.0
25 TraesCS2A01G228900 chr3B 89.423 208 18 1 1279 1482 429179923 429180130 2.650000e-65 259.0
26 TraesCS2A01G228900 chr3B 88.811 143 13 2 529 669 810401493 810401352 3.550000e-39 172.0
27 TraesCS2A01G228900 chr3B 82.266 203 24 10 628 828 736479909 736480101 5.930000e-37 165.0
28 TraesCS2A01G228900 chr7A 99.393 659 2 2 1 659 101301700 101302356 0.000000e+00 1194.0
29 TraesCS2A01G228900 chr7A 89.952 209 16 3 1279 1482 577492358 577492566 5.690000e-67 265.0
30 TraesCS2A01G228900 chr7A 83.884 242 18 7 1477 1697 87022656 87022415 7.510000e-51 211.0
31 TraesCS2A01G228900 chr3A 93.220 826 31 9 1 825 177879217 177878416 0.000000e+00 1192.0
32 TraesCS2A01G228900 chr3A 97.441 547 8 6 661 1201 363951723 363952269 0.000000e+00 928.0
33 TraesCS2A01G228900 chr3A 97.806 319 5 2 322 639 177865867 177865550 1.400000e-152 549.0
34 TraesCS2A01G228900 chr3A 89.904 208 17 1 1279 1482 117114177 117114384 5.690000e-67 265.0
35 TraesCS2A01G228900 chr3A 82.160 213 27 8 620 826 184621679 184621472 3.550000e-39 172.0
36 TraesCS2A01G228900 chr4B 98.672 527 7 0 675 1201 429597350 429597876 0.000000e+00 935.0
37 TraesCS2A01G228900 chr4A 97.744 532 10 2 671 1201 95155652 95156182 0.000000e+00 915.0
38 TraesCS2A01G228900 chr4A 89.518 477 37 10 193 659 626716489 626716962 2.300000e-165 592.0
39 TraesCS2A01G228900 chr4A 90.909 209 14 3 1279 1482 739703540 739703332 2.630000e-70 276.0
40 TraesCS2A01G228900 chr4A 90.909 209 14 3 1279 1482 742097431 742097223 2.630000e-70 276.0
41 TraesCS2A01G228900 chr4A 81.897 116 17 4 562 675 701390946 701391059 7.900000e-16 95.3
42 TraesCS2A01G228900 chr4A 81.897 116 17 4 562 675 701502070 701501957 7.900000e-16 95.3
43 TraesCS2A01G228900 chr4A 81.739 115 17 4 562 674 701444422 701444310 2.840000e-15 93.5
44 TraesCS2A01G228900 chr6A 97.514 523 13 0 679 1201 393232636 393233158 0.000000e+00 894.0
45 TraesCS2A01G228900 chr6A 91.367 139 11 1 529 667 568060846 568060709 3.520000e-44 189.0
46 TraesCS2A01G228900 chr6A 97.674 43 0 1 1692 1734 314314752 314314711 3.700000e-09 73.1
47 TraesCS2A01G228900 chr6A 97.500 40 1 0 1695 1734 346136832 346136871 4.790000e-08 69.4
48 TraesCS2A01G228900 chrUn 98.891 451 4 1 1 451 254202298 254201849 0.000000e+00 804.0
49 TraesCS2A01G228900 chrUn 80.870 230 31 13 664 883 284942540 284942314 4.590000e-38 169.0
50 TraesCS2A01G228900 chr7B 93.593 437 15 11 208 636 69326993 69326562 8.090000e-180 640.0
51 TraesCS2A01G228900 chr7B 99.408 169 1 0 1 169 69327152 69326984 9.320000e-80 307.0
52 TraesCS2A01G228900 chr7B 93.143 175 7 2 1 175 232754440 232754609 4.430000e-63 252.0
53 TraesCS2A01G228900 chr7B 83.058 242 20 7 1477 1697 232752579 232752820 1.630000e-47 200.0
54 TraesCS2A01G228900 chr7B 82.051 117 17 4 556 671 168313811 168313924 2.200000e-16 97.1
55 TraesCS2A01G228900 chr7B 93.333 60 4 0 1743 1802 726105784 726105725 3.670000e-14 89.8
56 TraesCS2A01G228900 chr4D 91.837 294 16 5 2113 2400 207695704 207695995 1.160000e-108 403.0
57 TraesCS2A01G228900 chr1A 90.816 294 19 4 2113 2400 44328318 44328027 1.160000e-103 387.0
58 TraesCS2A01G228900 chr1A 90.816 294 19 4 2113 2400 44358554 44358263 1.160000e-103 387.0
59 TraesCS2A01G228900 chr1A 87.458 295 16 2 2400 2673 44327636 44327342 1.200000e-83 320.0
60 TraesCS2A01G228900 chr1A 87.119 295 17 2 2400 2673 44357872 44357578 5.570000e-82 315.0
61 TraesCS2A01G228900 chr1D 89.796 294 22 4 2113 2400 44149992 44149701 1.170000e-98 370.0
62 TraesCS2A01G228900 chr1D 89.116 294 24 5 2113 2400 43831238 43830947 2.540000e-95 359.0
63 TraesCS2A01G228900 chr1D 88.776 294 24 5 2113 2400 44168196 44167906 4.240000e-93 351.0
64 TraesCS2A01G228900 chr1D 88.660 291 13 1 2400 2670 43830501 43830211 1.190000e-88 337.0
65 TraesCS2A01G228900 chr1D 88.621 290 12 5 2400 2670 44167516 44167229 1.540000e-87 333.0
66 TraesCS2A01G228900 chr1D 88.276 290 15 5 2400 2670 44268800 44268511 1.990000e-86 329.0
67 TraesCS2A01G228900 chr2D 88.462 260 11 1 2433 2673 612529173 612529432 2.020000e-76 296.0
68 TraesCS2A01G228900 chr5B 90.909 209 14 3 1279 1482 92454969 92455177 2.630000e-70 276.0
69 TraesCS2A01G228900 chr5B 93.143 175 7 2 1 175 710171207 710171038 4.430000e-63 252.0
70 TraesCS2A01G228900 chr5B 83.884 242 18 7 1477 1697 710174378 710174137 7.510000e-51 211.0
71 TraesCS2A01G228900 chr5B 93.333 60 4 0 1743 1802 509686835 509686776 3.670000e-14 89.8
72 TraesCS2A01G228900 chr1B 81.250 320 34 15 606 919 633762046 633761747 4.460000e-58 235.0
73 TraesCS2A01G228900 chr3D 81.633 196 11 7 1695 1878 505789100 505788918 3.600000e-29 139.0
74 TraesCS2A01G228900 chr7D 93.333 60 4 0 1743 1802 53680936 53680877 3.670000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G228900 chr2A 256197982 256200660 2678 False 4948.0 4948 100.0000 1 2679 1 chr2A.!!$F1 2678
1 TraesCS2A01G228900 chr2A 20346043 20346708 665 True 1101.0 1101 96.7070 1 659 1 chr2A.!!$R1 658
2 TraesCS2A01G228900 chr2A 668073820 668074331 511 False 918.0 918 99.0230 690 1201 1 chr2A.!!$F2 511
3 TraesCS2A01G228900 chr2B 150350545 150352023 1478 True 2617.0 2617 98.5830 1198 2679 1 chr2B.!!$R1 1481
4 TraesCS2A01G228900 chr5A 139482979 139485125 2146 True 1937.0 2091 99.5775 674 2679 2 chr5A.!!$R1 2005
5 TraesCS2A01G228900 chr6B 21193416 21198839 5423 False 1172.5 2045 91.7900 1 1201 2 chr6B.!!$F5 1200
6 TraesCS2A01G228900 chr6B 690991427 690993465 2038 True 226.0 252 88.1005 1 1697 2 chr6B.!!$R1 1696
7 TraesCS2A01G228900 chr3B 536902784 536904387 1603 True 1350.5 1574 99.4470 1198 2679 2 chr3B.!!$R4 1481
8 TraesCS2A01G228900 chr3B 787251090 787251637 547 True 933.0 933 97.6280 661 1201 1 chr3B.!!$R2 540
9 TraesCS2A01G228900 chr3B 1270038 1270558 520 True 887.0 887 97.5050 684 1201 1 chr3B.!!$R1 517
10 TraesCS2A01G228900 chr7A 101301700 101302356 656 False 1194.0 1194 99.3930 1 659 1 chr7A.!!$F1 658
11 TraesCS2A01G228900 chr3A 177878416 177879217 801 True 1192.0 1192 93.2200 1 825 1 chr3A.!!$R2 824
12 TraesCS2A01G228900 chr3A 363951723 363952269 546 False 928.0 928 97.4410 661 1201 1 chr3A.!!$F2 540
13 TraesCS2A01G228900 chr4B 429597350 429597876 526 False 935.0 935 98.6720 675 1201 1 chr4B.!!$F1 526
14 TraesCS2A01G228900 chr4A 95155652 95156182 530 False 915.0 915 97.7440 671 1201 1 chr4A.!!$F1 530
15 TraesCS2A01G228900 chr6A 393232636 393233158 522 False 894.0 894 97.5140 679 1201 1 chr6A.!!$F2 522
16 TraesCS2A01G228900 chr7B 69326562 69327152 590 True 473.5 640 96.5005 1 636 2 chr7B.!!$R2 635
17 TraesCS2A01G228900 chr7B 232752579 232754609 2030 False 226.0 252 88.1005 1 1697 2 chr7B.!!$F2 1696
18 TraesCS2A01G228900 chr1A 44327342 44328318 976 True 353.5 387 89.1370 2113 2673 2 chr1A.!!$R1 560
19 TraesCS2A01G228900 chr1A 44357578 44358554 976 True 351.0 387 88.9675 2113 2673 2 chr1A.!!$R2 560
20 TraesCS2A01G228900 chr1D 43830211 43831238 1027 True 348.0 359 88.8880 2113 2670 2 chr1D.!!$R3 557
21 TraesCS2A01G228900 chr1D 44167229 44168196 967 True 342.0 351 88.6985 2113 2670 2 chr1D.!!$R4 557
22 TraesCS2A01G228900 chr5B 710171038 710174378 3340 True 231.5 252 88.5135 1 1697 2 chr5B.!!$R2 1696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 657 0.037139 ACGCACGGGCATTTGTACTA 60.037 50.0 11.77 0.0 41.24 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 3335 1.708341 AGGTCAACAAGGCTTTGCAT 58.292 45.0 8.71 0.0 37.85 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.809096 GATGACTACATATATACCTGAACATGG 57.191 37.037 0.00 0.00 36.82 3.66
35 36 8.721133 TGACTACATATATACCTGAACATGGT 57.279 34.615 0.00 0.00 41.28 3.55
36 37 8.585018 TGACTACATATATACCTGAACATGGTG 58.415 37.037 0.00 0.00 38.42 4.17
37 38 7.907389 ACTACATATATACCTGAACATGGTGG 58.093 38.462 0.00 0.00 38.42 4.61
38 39 5.560724 ACATATATACCTGAACATGGTGGC 58.439 41.667 0.00 0.00 38.42 5.01
39 40 5.310594 ACATATATACCTGAACATGGTGGCT 59.689 40.000 0.00 0.00 38.42 4.75
40 41 4.796110 ATATACCTGAACATGGTGGCTT 57.204 40.909 0.00 0.00 38.42 4.35
41 42 2.198827 TACCTGAACATGGTGGCTTG 57.801 50.000 0.00 0.00 38.42 4.01
42 43 0.478072 ACCTGAACATGGTGGCTTGA 59.522 50.000 0.00 0.00 36.30 3.02
43 44 1.133513 ACCTGAACATGGTGGCTTGAA 60.134 47.619 0.00 0.00 36.30 2.69
44 45 1.270550 CCTGAACATGGTGGCTTGAAC 59.729 52.381 0.00 0.00 0.00 3.18
45 46 2.233271 CTGAACATGGTGGCTTGAACT 58.767 47.619 0.00 0.00 0.00 3.01
46 47 2.624838 CTGAACATGGTGGCTTGAACTT 59.375 45.455 0.00 0.00 0.00 2.66
47 48 2.361757 TGAACATGGTGGCTTGAACTTG 59.638 45.455 0.00 0.00 0.00 3.16
48 49 1.331214 ACATGGTGGCTTGAACTTGG 58.669 50.000 0.00 0.00 0.00 3.61
49 50 1.331214 CATGGTGGCTTGAACTTGGT 58.669 50.000 0.00 0.00 0.00 3.67
50 51 1.688197 CATGGTGGCTTGAACTTGGTT 59.312 47.619 0.00 0.00 0.00 3.67
51 52 2.738587 TGGTGGCTTGAACTTGGTTA 57.261 45.000 0.00 0.00 0.00 2.85
52 53 3.237268 TGGTGGCTTGAACTTGGTTAT 57.763 42.857 0.00 0.00 0.00 1.89
53 54 3.571590 TGGTGGCTTGAACTTGGTTATT 58.428 40.909 0.00 0.00 0.00 1.40
54 55 4.730966 TGGTGGCTTGAACTTGGTTATTA 58.269 39.130 0.00 0.00 0.00 0.98
55 56 5.329399 TGGTGGCTTGAACTTGGTTATTAT 58.671 37.500 0.00 0.00 0.00 1.28
56 57 5.777732 TGGTGGCTTGAACTTGGTTATTATT 59.222 36.000 0.00 0.00 0.00 1.40
57 58 6.071616 TGGTGGCTTGAACTTGGTTATTATTC 60.072 38.462 0.00 0.00 0.00 1.75
58 59 6.152831 GGTGGCTTGAACTTGGTTATTATTCT 59.847 38.462 0.00 0.00 0.00 2.40
59 60 7.309805 GGTGGCTTGAACTTGGTTATTATTCTT 60.310 37.037 0.00 0.00 0.00 2.52
60 61 7.542130 GTGGCTTGAACTTGGTTATTATTCTTG 59.458 37.037 0.00 0.00 0.00 3.02
61 62 7.035612 GGCTTGAACTTGGTTATTATTCTTGG 58.964 38.462 0.00 0.00 0.00 3.61
62 63 7.093945 GGCTTGAACTTGGTTATTATTCTTGGA 60.094 37.037 0.00 0.00 0.00 3.53
63 64 7.755373 GCTTGAACTTGGTTATTATTCTTGGAC 59.245 37.037 0.00 0.00 0.00 4.02
64 65 8.698973 TTGAACTTGGTTATTATTCTTGGACA 57.301 30.769 0.00 0.00 0.00 4.02
65 66 8.877864 TGAACTTGGTTATTATTCTTGGACAT 57.122 30.769 0.00 0.00 0.00 3.06
66 67 8.739039 TGAACTTGGTTATTATTCTTGGACATG 58.261 33.333 0.00 0.00 0.00 3.21
67 68 8.877864 AACTTGGTTATTATTCTTGGACATGA 57.122 30.769 0.00 0.00 0.00 3.07
68 69 9.479549 AACTTGGTTATTATTCTTGGACATGAT 57.520 29.630 0.00 0.00 0.00 2.45
69 70 8.906867 ACTTGGTTATTATTCTTGGACATGATG 58.093 33.333 0.00 0.00 0.00 3.07
70 71 7.275888 TGGTTATTATTCTTGGACATGATGC 57.724 36.000 0.00 0.00 0.00 3.91
71 72 7.062322 TGGTTATTATTCTTGGACATGATGCT 58.938 34.615 0.00 0.00 0.00 3.79
72 73 7.013559 TGGTTATTATTCTTGGACATGATGCTG 59.986 37.037 0.00 0.00 0.00 4.41
73 74 7.365741 GTTATTATTCTTGGACATGATGCTGG 58.634 38.462 0.00 0.00 0.00 4.85
74 75 3.657398 ATTCTTGGACATGATGCTGGA 57.343 42.857 0.00 0.00 0.00 3.86
75 76 3.438216 TTCTTGGACATGATGCTGGAA 57.562 42.857 0.00 0.00 0.00 3.53
76 77 3.657398 TCTTGGACATGATGCTGGAAT 57.343 42.857 0.00 0.00 0.00 3.01
77 78 4.776435 TCTTGGACATGATGCTGGAATA 57.224 40.909 0.00 0.00 0.00 1.75
78 79 5.114764 TCTTGGACATGATGCTGGAATAA 57.885 39.130 0.00 0.00 0.00 1.40
79 80 5.698104 TCTTGGACATGATGCTGGAATAAT 58.302 37.500 0.00 0.00 0.00 1.28
80 81 6.131264 TCTTGGACATGATGCTGGAATAATT 58.869 36.000 0.00 0.00 0.00 1.40
81 82 6.263842 TCTTGGACATGATGCTGGAATAATTC 59.736 38.462 0.00 0.00 0.00 2.17
82 83 5.698104 TGGACATGATGCTGGAATAATTCT 58.302 37.500 0.00 0.00 0.00 2.40
83 84 6.131264 TGGACATGATGCTGGAATAATTCTT 58.869 36.000 0.00 0.00 0.00 2.52
84 85 6.040054 TGGACATGATGCTGGAATAATTCTTG 59.960 38.462 0.00 0.00 0.00 3.02
85 86 6.263842 GGACATGATGCTGGAATAATTCTTGA 59.736 38.462 0.00 0.00 0.00 3.02
86 87 7.201848 GGACATGATGCTGGAATAATTCTTGAA 60.202 37.037 0.00 0.00 0.00 2.69
87 88 7.713750 ACATGATGCTGGAATAATTCTTGAAG 58.286 34.615 0.00 0.00 0.00 3.02
88 89 7.341256 ACATGATGCTGGAATAATTCTTGAAGT 59.659 33.333 0.00 0.00 0.00 3.01
89 90 7.707624 TGATGCTGGAATAATTCTTGAAGTT 57.292 32.000 0.00 0.00 0.00 2.66
90 91 8.125978 TGATGCTGGAATAATTCTTGAAGTTT 57.874 30.769 0.00 0.00 0.00 2.66
91 92 8.246180 TGATGCTGGAATAATTCTTGAAGTTTC 58.754 33.333 0.00 0.00 0.00 2.78
92 93 7.523293 TGCTGGAATAATTCTTGAAGTTTCA 57.477 32.000 0.00 0.00 34.92 2.69
93 94 8.125978 TGCTGGAATAATTCTTGAAGTTTCAT 57.874 30.769 0.00 0.00 37.00 2.57
94 95 9.241919 TGCTGGAATAATTCTTGAAGTTTCATA 57.758 29.630 0.00 0.00 37.00 2.15
105 106 9.896645 TTCTTGAAGTTTCATATATTCTGCTCT 57.103 29.630 0.00 0.00 37.00 4.09
106 107 9.896645 TCTTGAAGTTTCATATATTCTGCTCTT 57.103 29.630 0.00 0.00 37.00 2.85
109 110 9.896645 TGAAGTTTCATATATTCTGCTCTTTCT 57.103 29.630 0.00 0.00 31.01 2.52
112 113 9.896645 AGTTTCATATATTCTGCTCTTTCTTCA 57.103 29.630 0.00 0.00 0.00 3.02
143 144 8.583810 CAATTAGTTTAATTGCATCCCTGATG 57.416 34.615 8.20 0.00 45.70 3.07
144 145 6.713762 TTAGTTTAATTGCATCCCTGATGG 57.286 37.500 6.24 0.00 40.10 3.51
145 146 4.613437 AGTTTAATTGCATCCCTGATGGT 58.387 39.130 6.24 0.00 40.10 3.55
146 147 5.765510 AGTTTAATTGCATCCCTGATGGTA 58.234 37.500 6.24 0.00 40.10 3.25
147 148 5.829924 AGTTTAATTGCATCCCTGATGGTAG 59.170 40.000 6.24 0.00 40.10 3.18
148 149 3.959495 AATTGCATCCCTGATGGTAGT 57.041 42.857 6.24 0.00 40.10 2.73
149 150 3.959495 ATTGCATCCCTGATGGTAGTT 57.041 42.857 6.24 0.00 40.10 2.24
150 151 3.737559 TTGCATCCCTGATGGTAGTTT 57.262 42.857 6.24 0.00 40.10 2.66
151 152 3.737559 TGCATCCCTGATGGTAGTTTT 57.262 42.857 6.24 0.00 40.10 2.43
152 153 4.853468 TGCATCCCTGATGGTAGTTTTA 57.147 40.909 6.24 0.00 40.10 1.52
153 154 4.780815 TGCATCCCTGATGGTAGTTTTAG 58.219 43.478 6.24 0.00 40.10 1.85
154 155 4.473196 TGCATCCCTGATGGTAGTTTTAGA 59.527 41.667 6.24 0.00 40.10 2.10
155 156 5.132648 TGCATCCCTGATGGTAGTTTTAGAT 59.867 40.000 6.24 0.00 40.10 1.98
156 157 6.328934 TGCATCCCTGATGGTAGTTTTAGATA 59.671 38.462 6.24 0.00 40.10 1.98
157 158 7.017551 TGCATCCCTGATGGTAGTTTTAGATAT 59.982 37.037 6.24 0.00 40.10 1.63
158 159 7.335422 GCATCCCTGATGGTAGTTTTAGATATG 59.665 40.741 6.24 0.00 40.10 1.78
159 160 7.931015 TCCCTGATGGTAGTTTTAGATATGT 57.069 36.000 0.00 0.00 34.77 2.29
160 161 9.615660 ATCCCTGATGGTAGTTTTAGATATGTA 57.384 33.333 0.00 0.00 34.77 2.29
161 162 9.090103 TCCCTGATGGTAGTTTTAGATATGTAG 57.910 37.037 0.00 0.00 34.77 2.74
162 163 7.819900 CCCTGATGGTAGTTTTAGATATGTAGC 59.180 40.741 0.00 0.00 0.00 3.58
163 164 8.367911 CCTGATGGTAGTTTTAGATATGTAGCA 58.632 37.037 0.00 0.00 0.00 3.49
164 165 9.764363 CTGATGGTAGTTTTAGATATGTAGCAA 57.236 33.333 0.00 0.00 0.00 3.91
173 174 9.788960 GTTTTAGATATGTAGCAAAAGAAAGGG 57.211 33.333 0.00 0.00 0.00 3.95
174 175 9.528489 TTTTAGATATGTAGCAAAAGAAAGGGT 57.472 29.630 0.00 0.00 0.00 4.34
175 176 8.732746 TTAGATATGTAGCAAAAGAAAGGGTC 57.267 34.615 0.00 0.00 0.00 4.46
176 177 6.721318 AGATATGTAGCAAAAGAAAGGGTCA 58.279 36.000 0.00 0.00 0.00 4.02
177 178 7.175104 AGATATGTAGCAAAAGAAAGGGTCAA 58.825 34.615 0.00 0.00 0.00 3.18
178 179 7.836183 AGATATGTAGCAAAAGAAAGGGTCAAT 59.164 33.333 0.00 0.00 0.00 2.57
179 180 6.670695 ATGTAGCAAAAGAAAGGGTCAATT 57.329 33.333 0.00 0.00 0.00 2.32
180 181 7.775053 ATGTAGCAAAAGAAAGGGTCAATTA 57.225 32.000 0.00 0.00 0.00 1.40
181 182 6.977213 TGTAGCAAAAGAAAGGGTCAATTAC 58.023 36.000 0.00 0.00 0.00 1.89
182 183 6.547880 TGTAGCAAAAGAAAGGGTCAATTACA 59.452 34.615 0.00 0.00 0.00 2.41
183 184 5.842907 AGCAAAAGAAAGGGTCAATTACAC 58.157 37.500 0.00 0.00 0.00 2.90
184 185 5.362430 AGCAAAAGAAAGGGTCAATTACACA 59.638 36.000 0.00 0.00 31.97 3.72
185 186 6.041979 AGCAAAAGAAAGGGTCAATTACACAT 59.958 34.615 0.00 0.00 31.97 3.21
186 187 6.705825 GCAAAAGAAAGGGTCAATTACACATT 59.294 34.615 0.00 0.00 31.97 2.71
187 188 7.307337 GCAAAAGAAAGGGTCAATTACACATTG 60.307 37.037 0.00 0.00 31.97 2.82
188 189 6.976934 AAGAAAGGGTCAATTACACATTGT 57.023 33.333 0.00 0.00 31.97 2.71
189 190 6.976934 AGAAAGGGTCAATTACACATTGTT 57.023 33.333 0.00 0.00 31.97 2.83
190 191 6.748132 AGAAAGGGTCAATTACACATTGTTG 58.252 36.000 0.00 0.00 31.97 3.33
191 192 5.467035 AAGGGTCAATTACACATTGTTGG 57.533 39.130 0.00 0.00 31.97 3.77
192 193 3.831911 AGGGTCAATTACACATTGTTGGG 59.168 43.478 0.00 0.00 31.97 4.12
193 194 3.584834 GGTCAATTACACATTGTTGGGC 58.415 45.455 0.00 0.00 0.00 5.36
194 195 3.584834 GTCAATTACACATTGTTGGGCC 58.415 45.455 0.00 0.00 0.00 5.80
195 196 2.564947 TCAATTACACATTGTTGGGCCC 59.435 45.455 17.59 17.59 0.00 5.80
196 197 2.566724 CAATTACACATTGTTGGGCCCT 59.433 45.455 25.70 0.00 0.00 5.19
197 198 1.917872 TTACACATTGTTGGGCCCTC 58.082 50.000 25.70 16.72 0.00 4.30
198 199 0.774276 TACACATTGTTGGGCCCTCA 59.226 50.000 25.70 19.28 0.00 3.86
199 200 0.827507 ACACATTGTTGGGCCCTCAC 60.828 55.000 25.70 20.03 0.00 3.51
200 201 1.603455 ACATTGTTGGGCCCTCACG 60.603 57.895 25.70 16.74 0.00 4.35
201 202 2.035626 ATTGTTGGGCCCTCACGG 59.964 61.111 25.70 0.00 0.00 4.94
210 211 3.320359 CCCTCACGGCCCAATAGT 58.680 61.111 0.00 0.00 0.00 2.12
211 212 2.523440 CCCTCACGGCCCAATAGTA 58.477 57.895 0.00 0.00 0.00 1.82
212 213 0.834612 CCCTCACGGCCCAATAGTAA 59.165 55.000 0.00 0.00 0.00 2.24
213 214 1.202651 CCCTCACGGCCCAATAGTAAG 60.203 57.143 0.00 0.00 0.00 2.34
214 215 1.760613 CCTCACGGCCCAATAGTAAGA 59.239 52.381 0.00 0.00 0.00 2.10
215 216 2.169769 CCTCACGGCCCAATAGTAAGAA 59.830 50.000 0.00 0.00 0.00 2.52
216 217 3.458189 CTCACGGCCCAATAGTAAGAAG 58.542 50.000 0.00 0.00 0.00 2.85
217 218 3.101437 TCACGGCCCAATAGTAAGAAGA 58.899 45.455 0.00 0.00 0.00 2.87
218 219 3.709653 TCACGGCCCAATAGTAAGAAGAT 59.290 43.478 0.00 0.00 0.00 2.40
219 220 4.058817 CACGGCCCAATAGTAAGAAGATC 58.941 47.826 0.00 0.00 0.00 2.75
220 221 3.967987 ACGGCCCAATAGTAAGAAGATCT 59.032 43.478 0.00 0.00 0.00 2.75
221 222 4.409247 ACGGCCCAATAGTAAGAAGATCTT 59.591 41.667 7.95 7.95 40.35 2.40
222 223 4.991687 CGGCCCAATAGTAAGAAGATCTTC 59.008 45.833 25.20 25.20 37.89 2.87
234 235 5.346181 AGAAGATCTTCTTTTAGGGGTCG 57.654 43.478 28.70 0.00 46.95 4.79
235 236 3.545366 AGATCTTCTTTTAGGGGTCGC 57.455 47.619 0.00 0.00 0.00 5.19
236 237 2.838202 AGATCTTCTTTTAGGGGTCGCA 59.162 45.455 0.00 0.00 0.00 5.10
237 238 2.762535 TCTTCTTTTAGGGGTCGCAG 57.237 50.000 0.00 0.00 0.00 5.18
238 239 1.087501 CTTCTTTTAGGGGTCGCAGC 58.912 55.000 0.00 0.00 0.00 5.25
239 240 0.672401 TTCTTTTAGGGGTCGCAGCG 60.672 55.000 9.06 9.06 0.00 5.18
240 241 2.046700 TTTTAGGGGTCGCAGCGG 60.047 61.111 16.42 0.00 0.00 5.52
241 242 2.798148 CTTTTAGGGGTCGCAGCGGT 62.798 60.000 16.42 0.00 0.00 5.68
242 243 1.543065 TTTTAGGGGTCGCAGCGGTA 61.543 55.000 16.42 0.00 0.00 4.02
243 244 2.229690 TTTAGGGGTCGCAGCGGTAC 62.230 60.000 16.42 6.52 0.00 3.34
263 264 2.537401 CGAAGATAAGTTCGTGGGTCC 58.463 52.381 0.00 0.00 43.51 4.46
264 265 2.165845 CGAAGATAAGTTCGTGGGTCCT 59.834 50.000 0.00 0.00 43.51 3.85
265 266 3.368116 CGAAGATAAGTTCGTGGGTCCTT 60.368 47.826 0.00 0.00 43.51 3.36
266 267 3.889520 AGATAAGTTCGTGGGTCCTTC 57.110 47.619 0.00 0.00 0.00 3.46
267 268 2.500504 AGATAAGTTCGTGGGTCCTTCC 59.499 50.000 0.00 0.00 0.00 3.46
268 269 1.719529 TAAGTTCGTGGGTCCTTCCA 58.280 50.000 0.00 0.00 38.11 3.53
269 270 1.064825 AAGTTCGTGGGTCCTTCCAT 58.935 50.000 0.00 0.00 39.26 3.41
270 271 0.324943 AGTTCGTGGGTCCTTCCATG 59.675 55.000 0.00 0.00 43.39 3.66
271 272 1.002624 TTCGTGGGTCCTTCCATGC 60.003 57.895 0.00 0.00 42.14 4.06
272 273 1.773856 TTCGTGGGTCCTTCCATGCA 61.774 55.000 0.00 0.00 42.14 3.96
273 274 2.040544 CGTGGGTCCTTCCATGCAC 61.041 63.158 0.00 0.00 39.26 4.57
274 275 1.678970 GTGGGTCCTTCCATGCACC 60.679 63.158 0.00 0.00 39.26 5.01
275 276 1.852157 TGGGTCCTTCCATGCACCT 60.852 57.895 0.00 0.00 38.11 4.00
276 277 1.384191 GGGTCCTTCCATGCACCTT 59.616 57.895 0.00 0.00 38.11 3.50
277 278 0.623723 GGGTCCTTCCATGCACCTTA 59.376 55.000 0.00 0.00 38.11 2.69
278 279 1.005450 GGGTCCTTCCATGCACCTTAA 59.995 52.381 0.00 0.00 38.11 1.85
279 280 2.092323 GGTCCTTCCATGCACCTTAAC 58.908 52.381 0.00 0.00 35.97 2.01
280 281 2.290960 GGTCCTTCCATGCACCTTAACT 60.291 50.000 0.00 0.00 35.97 2.24
281 282 3.054655 GGTCCTTCCATGCACCTTAACTA 60.055 47.826 0.00 0.00 35.97 2.24
282 283 4.385310 GGTCCTTCCATGCACCTTAACTAT 60.385 45.833 0.00 0.00 35.97 2.12
283 284 5.193679 GTCCTTCCATGCACCTTAACTATT 58.806 41.667 0.00 0.00 0.00 1.73
284 285 5.652452 GTCCTTCCATGCACCTTAACTATTT 59.348 40.000 0.00 0.00 0.00 1.40
285 286 6.152831 GTCCTTCCATGCACCTTAACTATTTT 59.847 38.462 0.00 0.00 0.00 1.82
286 287 6.152661 TCCTTCCATGCACCTTAACTATTTTG 59.847 38.462 0.00 0.00 0.00 2.44
287 288 6.071391 CCTTCCATGCACCTTAACTATTTTGT 60.071 38.462 0.00 0.00 0.00 2.83
288 289 6.909550 TCCATGCACCTTAACTATTTTGTT 57.090 33.333 0.00 0.00 0.00 2.83
289 290 7.296628 TCCATGCACCTTAACTATTTTGTTT 57.703 32.000 0.00 0.00 0.00 2.83
290 291 7.151308 TCCATGCACCTTAACTATTTTGTTTG 58.849 34.615 0.00 0.00 0.00 2.93
291 292 6.368516 CCATGCACCTTAACTATTTTGTTTGG 59.631 38.462 0.00 0.00 0.00 3.28
292 293 5.848406 TGCACCTTAACTATTTTGTTTGGG 58.152 37.500 0.00 0.00 31.46 4.12
293 294 4.688879 GCACCTTAACTATTTTGTTTGGGC 59.311 41.667 0.00 0.00 31.46 5.36
294 295 5.234752 CACCTTAACTATTTTGTTTGGGCC 58.765 41.667 0.00 0.00 31.46 5.80
295 296 4.902448 ACCTTAACTATTTTGTTTGGGCCA 59.098 37.500 0.00 0.00 31.46 5.36
296 297 5.367060 ACCTTAACTATTTTGTTTGGGCCAA 59.633 36.000 16.66 16.66 31.46 4.52
297 298 5.931724 CCTTAACTATTTTGTTTGGGCCAAG 59.068 40.000 19.90 7.58 0.00 3.61
298 299 3.401033 ACTATTTTGTTTGGGCCAAGC 57.599 42.857 24.40 24.40 0.00 4.01
310 311 2.729028 GGCCAAGCCCAGATAGTAAA 57.271 50.000 0.00 0.00 44.06 2.01
311 312 3.012934 GGCCAAGCCCAGATAGTAAAA 57.987 47.619 0.00 0.00 44.06 1.52
312 313 3.361786 GGCCAAGCCCAGATAGTAAAAA 58.638 45.455 0.00 0.00 44.06 1.94
336 337 8.615878 AAAAATAAATTTCCCAACCAAGCTAC 57.384 30.769 0.00 0.00 0.00 3.58
337 338 5.932619 ATAAATTTCCCAACCAAGCTACC 57.067 39.130 0.00 0.00 0.00 3.18
338 339 2.990740 ATTTCCCAACCAAGCTACCA 57.009 45.000 0.00 0.00 0.00 3.25
339 340 2.757894 TTTCCCAACCAAGCTACCAA 57.242 45.000 0.00 0.00 0.00 3.67
340 341 1.989706 TTCCCAACCAAGCTACCAAC 58.010 50.000 0.00 0.00 0.00 3.77
341 342 1.145571 TCCCAACCAAGCTACCAACT 58.854 50.000 0.00 0.00 0.00 3.16
342 343 2.340731 TCCCAACCAAGCTACCAACTA 58.659 47.619 0.00 0.00 0.00 2.24
343 344 2.916934 TCCCAACCAAGCTACCAACTAT 59.083 45.455 0.00 0.00 0.00 2.12
344 345 3.054655 TCCCAACCAAGCTACCAACTATC 60.055 47.826 0.00 0.00 0.00 2.08
345 346 3.054361 CCCAACCAAGCTACCAACTATCT 60.054 47.826 0.00 0.00 0.00 1.98
346 347 3.941483 CCAACCAAGCTACCAACTATCTG 59.059 47.826 0.00 0.00 0.00 2.90
347 348 4.565652 CCAACCAAGCTACCAACTATCTGT 60.566 45.833 0.00 0.00 0.00 3.41
348 349 5.338056 CCAACCAAGCTACCAACTATCTGTA 60.338 44.000 0.00 0.00 0.00 2.74
349 350 6.170506 CAACCAAGCTACCAACTATCTGTAA 58.829 40.000 0.00 0.00 0.00 2.41
350 351 6.368779 ACCAAGCTACCAACTATCTGTAAA 57.631 37.500 0.00 0.00 0.00 2.01
351 352 6.775708 ACCAAGCTACCAACTATCTGTAAAA 58.224 36.000 0.00 0.00 0.00 1.52
352 353 7.228590 ACCAAGCTACCAACTATCTGTAAAAA 58.771 34.615 0.00 0.00 0.00 1.94
353 354 7.888546 ACCAAGCTACCAACTATCTGTAAAAAT 59.111 33.333 0.00 0.00 0.00 1.82
354 355 8.739972 CCAAGCTACCAACTATCTGTAAAAATT 58.260 33.333 0.00 0.00 0.00 1.82
357 358 9.392259 AGCTACCAACTATCTGTAAAAATTACC 57.608 33.333 0.00 0.00 0.00 2.85
358 359 9.169592 GCTACCAACTATCTGTAAAAATTACCA 57.830 33.333 0.00 0.00 0.00 3.25
378 379 9.688091 ATTACCAAACAAAAATACCCAAAAAGT 57.312 25.926 0.00 0.00 0.00 2.66
379 380 9.516546 TTACCAAACAAAAATACCCAAAAAGTT 57.483 25.926 0.00 0.00 0.00 2.66
381 382 9.516546 ACCAAACAAAAATACCCAAAAAGTTAA 57.483 25.926 0.00 0.00 0.00 2.01
382 383 9.776158 CCAAACAAAAATACCCAAAAAGTTAAC 57.224 29.630 0.00 0.00 0.00 2.01
385 386 9.503399 AACAAAAATACCCAAAAAGTTAACACA 57.497 25.926 8.61 0.00 0.00 3.72
386 387 9.503399 ACAAAAATACCCAAAAAGTTAACACAA 57.497 25.926 8.61 0.00 0.00 3.33
452 453 9.770503 TTTTTAAAAACACTTAAAAATTCGCCC 57.229 25.926 9.31 0.00 41.99 6.13
453 454 8.488651 TTTAAAAACACTTAAAAATTCGCCCA 57.511 26.923 0.00 0.00 29.84 5.36
454 455 6.986904 AAAAACACTTAAAAATTCGCCCAA 57.013 29.167 0.00 0.00 0.00 4.12
455 456 6.986904 AAAACACTTAAAAATTCGCCCAAA 57.013 29.167 0.00 0.00 0.00 3.28
456 457 6.986904 AAACACTTAAAAATTCGCCCAAAA 57.013 29.167 0.00 0.00 0.00 2.44
457 458 6.986904 AACACTTAAAAATTCGCCCAAAAA 57.013 29.167 0.00 0.00 0.00 1.94
601 602 9.892130 ATATTAAAAATGGCGAAAAATTACCCA 57.108 25.926 0.00 0.00 0.00 4.51
602 603 8.800370 ATTAAAAATGGCGAAAAATTACCCAT 57.200 26.923 0.00 0.00 37.88 4.00
603 604 6.735678 AAAAATGGCGAAAAATTACCCATC 57.264 33.333 0.00 0.00 35.34 3.51
604 605 5.413309 AAATGGCGAAAAATTACCCATCA 57.587 34.783 0.00 0.00 35.34 3.07
605 606 5.413309 AATGGCGAAAAATTACCCATCAA 57.587 34.783 0.00 0.00 35.34 2.57
606 607 4.448537 TGGCGAAAAATTACCCATCAAG 57.551 40.909 0.00 0.00 0.00 3.02
607 608 3.186909 GGCGAAAAATTACCCATCAAGC 58.813 45.455 0.00 0.00 0.00 4.01
608 609 3.367910 GGCGAAAAATTACCCATCAAGCA 60.368 43.478 0.00 0.00 0.00 3.91
609 610 3.859386 GCGAAAAATTACCCATCAAGCAG 59.141 43.478 0.00 0.00 0.00 4.24
610 611 4.423732 CGAAAAATTACCCATCAAGCAGG 58.576 43.478 0.00 0.00 0.00 4.85
611 612 4.082245 CGAAAAATTACCCATCAAGCAGGT 60.082 41.667 0.00 0.00 37.69 4.00
612 613 5.566627 CGAAAAATTACCCATCAAGCAGGTT 60.567 40.000 0.00 0.00 35.02 3.50
613 614 5.405935 AAAATTACCCATCAAGCAGGTTC 57.594 39.130 0.00 0.00 35.02 3.62
614 615 4.322057 AATTACCCATCAAGCAGGTTCT 57.678 40.909 0.00 0.00 35.02 3.01
615 616 5.450818 AATTACCCATCAAGCAGGTTCTA 57.549 39.130 0.00 0.00 35.02 2.10
616 617 5.653255 ATTACCCATCAAGCAGGTTCTAT 57.347 39.130 0.00 0.00 35.02 1.98
617 618 3.567478 ACCCATCAAGCAGGTTCTATC 57.433 47.619 0.00 0.00 0.00 2.08
618 619 2.846206 ACCCATCAAGCAGGTTCTATCA 59.154 45.455 0.00 0.00 0.00 2.15
619 620 3.461085 ACCCATCAAGCAGGTTCTATCAT 59.539 43.478 0.00 0.00 0.00 2.45
620 621 4.079558 ACCCATCAAGCAGGTTCTATCATT 60.080 41.667 0.00 0.00 0.00 2.57
621 622 4.891756 CCCATCAAGCAGGTTCTATCATTT 59.108 41.667 0.00 0.00 0.00 2.32
622 623 5.361857 CCCATCAAGCAGGTTCTATCATTTT 59.638 40.000 0.00 0.00 0.00 1.82
623 624 6.127253 CCCATCAAGCAGGTTCTATCATTTTT 60.127 38.462 0.00 0.00 0.00 1.94
624 625 7.068593 CCCATCAAGCAGGTTCTATCATTTTTA 59.931 37.037 0.00 0.00 0.00 1.52
625 626 8.636213 CCATCAAGCAGGTTCTATCATTTTTAT 58.364 33.333 0.00 0.00 0.00 1.40
626 627 9.674824 CATCAAGCAGGTTCTATCATTTTTATC 57.325 33.333 0.00 0.00 0.00 1.75
627 628 7.919690 TCAAGCAGGTTCTATCATTTTTATCG 58.080 34.615 0.00 0.00 0.00 2.92
628 629 6.305693 AGCAGGTTCTATCATTTTTATCGC 57.694 37.500 0.00 0.00 0.00 4.58
629 630 5.239525 AGCAGGTTCTATCATTTTTATCGCC 59.760 40.000 0.00 0.00 0.00 5.54
630 631 5.562890 GCAGGTTCTATCATTTTTATCGCCC 60.563 44.000 0.00 0.00 0.00 6.13
631 632 4.755123 AGGTTCTATCATTTTTATCGCCCG 59.245 41.667 0.00 0.00 0.00 6.13
632 633 4.083484 GGTTCTATCATTTTTATCGCCCGG 60.083 45.833 0.00 0.00 0.00 5.73
633 634 4.345859 TCTATCATTTTTATCGCCCGGT 57.654 40.909 0.00 0.00 0.00 5.28
634 635 4.062293 TCTATCATTTTTATCGCCCGGTG 58.938 43.478 0.00 0.00 0.00 4.94
635 636 0.736053 TCATTTTTATCGCCCGGTGC 59.264 50.000 0.00 2.24 0.00 5.01
636 637 0.453793 CATTTTTATCGCCCGGTGCA 59.546 50.000 14.17 0.00 41.33 4.57
637 638 1.135257 CATTTTTATCGCCCGGTGCAA 60.135 47.619 14.17 0.00 41.33 4.08
638 639 0.241481 TTTTTATCGCCCGGTGCAAC 59.759 50.000 14.17 0.00 41.33 4.17
639 640 1.913451 TTTTATCGCCCGGTGCAACG 61.913 55.000 19.45 19.45 41.33 4.10
650 651 3.600694 TGCAACGCACGGGCATTT 61.601 55.556 11.77 0.00 41.24 2.32
651 652 3.105157 GCAACGCACGGGCATTTG 61.105 61.111 11.77 13.80 41.24 2.32
652 653 2.334653 CAACGCACGGGCATTTGT 59.665 55.556 11.77 0.00 41.24 2.83
653 654 1.576920 CAACGCACGGGCATTTGTA 59.423 52.632 11.77 0.00 41.24 2.41
654 655 0.727793 CAACGCACGGGCATTTGTAC 60.728 55.000 11.77 0.00 41.24 2.90
655 656 0.887387 AACGCACGGGCATTTGTACT 60.887 50.000 11.77 0.00 41.24 2.73
656 657 0.037139 ACGCACGGGCATTTGTACTA 60.037 50.000 11.77 0.00 41.24 1.82
657 658 0.650512 CGCACGGGCATTTGTACTAG 59.349 55.000 11.77 0.00 41.24 2.57
658 659 1.734163 GCACGGGCATTTGTACTAGT 58.266 50.000 3.77 0.00 40.72 2.57
659 660 2.736081 CGCACGGGCATTTGTACTAGTA 60.736 50.000 11.77 0.00 41.24 1.82
660 661 3.264104 GCACGGGCATTTGTACTAGTAA 58.736 45.455 3.77 0.00 40.72 2.24
661 662 3.875134 GCACGGGCATTTGTACTAGTAAT 59.125 43.478 3.77 0.00 40.72 1.89
662 663 5.051816 GCACGGGCATTTGTACTAGTAATA 58.948 41.667 3.77 0.00 40.72 0.98
663 664 5.524646 GCACGGGCATTTGTACTAGTAATAA 59.475 40.000 3.77 2.43 40.72 1.40
664 665 6.204108 GCACGGGCATTTGTACTAGTAATAAT 59.796 38.462 3.77 4.72 40.72 1.28
665 666 7.385752 GCACGGGCATTTGTACTAGTAATAATA 59.614 37.037 3.77 0.00 40.72 0.98
666 667 9.263538 CACGGGCATTTGTACTAGTAATAATAA 57.736 33.333 3.61 0.00 0.00 1.40
2031 3335 1.229114 TTGGGGATGCACATTGCCA 60.229 52.632 0.00 0.00 44.23 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.809096 CCATGTTCAGGTATATATGTAGTCATC 57.191 37.037 0.00 0.00 35.70 2.92
9 10 9.326489 ACCATGTTCAGGTATATATGTAGTCAT 57.674 33.333 0.00 0.00 37.67 3.06
10 11 8.585018 CACCATGTTCAGGTATATATGTAGTCA 58.415 37.037 0.00 0.00 37.23 3.41
11 12 8.035394 CCACCATGTTCAGGTATATATGTAGTC 58.965 40.741 0.00 0.00 37.23 2.59
13 14 6.818644 GCCACCATGTTCAGGTATATATGTAG 59.181 42.308 0.00 0.00 37.23 2.74
14 15 6.500400 AGCCACCATGTTCAGGTATATATGTA 59.500 38.462 0.00 0.00 37.23 2.29
15 16 5.310594 AGCCACCATGTTCAGGTATATATGT 59.689 40.000 0.00 0.00 37.23 2.29
16 17 5.809001 AGCCACCATGTTCAGGTATATATG 58.191 41.667 0.00 0.00 37.23 1.78
17 18 6.044287 TCAAGCCACCATGTTCAGGTATATAT 59.956 38.462 0.00 0.00 37.23 0.86
18 19 5.368230 TCAAGCCACCATGTTCAGGTATATA 59.632 40.000 0.00 0.00 37.23 0.86
19 20 4.165950 TCAAGCCACCATGTTCAGGTATAT 59.834 41.667 0.00 0.00 37.23 0.86
20 21 3.521531 TCAAGCCACCATGTTCAGGTATA 59.478 43.478 0.00 0.00 37.23 1.47
21 22 2.308570 TCAAGCCACCATGTTCAGGTAT 59.691 45.455 0.00 0.00 37.23 2.73
22 23 1.702401 TCAAGCCACCATGTTCAGGTA 59.298 47.619 0.00 0.00 37.23 3.08
23 24 0.478072 TCAAGCCACCATGTTCAGGT 59.522 50.000 0.00 0.00 40.85 4.00
24 25 1.270550 GTTCAAGCCACCATGTTCAGG 59.729 52.381 0.00 0.00 0.00 3.86
25 26 2.233271 AGTTCAAGCCACCATGTTCAG 58.767 47.619 0.00 0.00 0.00 3.02
26 27 2.361757 CAAGTTCAAGCCACCATGTTCA 59.638 45.455 0.00 0.00 0.00 3.18
27 28 2.288395 CCAAGTTCAAGCCACCATGTTC 60.288 50.000 0.00 0.00 0.00 3.18
28 29 1.688197 CCAAGTTCAAGCCACCATGTT 59.312 47.619 0.00 0.00 0.00 2.71
29 30 1.331214 CCAAGTTCAAGCCACCATGT 58.669 50.000 0.00 0.00 0.00 3.21
30 31 1.331214 ACCAAGTTCAAGCCACCATG 58.669 50.000 0.00 0.00 0.00 3.66
31 32 2.086610 AACCAAGTTCAAGCCACCAT 57.913 45.000 0.00 0.00 0.00 3.55
32 33 2.738587 TAACCAAGTTCAAGCCACCA 57.261 45.000 0.00 0.00 0.00 4.17
33 34 5.914898 ATAATAACCAAGTTCAAGCCACC 57.085 39.130 0.00 0.00 0.00 4.61
34 35 7.158099 AGAATAATAACCAAGTTCAAGCCAC 57.842 36.000 0.00 0.00 0.00 5.01
35 36 7.309744 CCAAGAATAATAACCAAGTTCAAGCCA 60.310 37.037 0.00 0.00 0.00 4.75
36 37 7.035612 CCAAGAATAATAACCAAGTTCAAGCC 58.964 38.462 0.00 0.00 0.00 4.35
37 38 7.755373 GTCCAAGAATAATAACCAAGTTCAAGC 59.245 37.037 0.00 0.00 0.00 4.01
38 39 8.792633 TGTCCAAGAATAATAACCAAGTTCAAG 58.207 33.333 0.00 0.00 0.00 3.02
39 40 8.698973 TGTCCAAGAATAATAACCAAGTTCAA 57.301 30.769 0.00 0.00 0.00 2.69
40 41 8.739039 CATGTCCAAGAATAATAACCAAGTTCA 58.261 33.333 0.00 0.00 0.00 3.18
41 42 8.956426 TCATGTCCAAGAATAATAACCAAGTTC 58.044 33.333 0.00 0.00 0.00 3.01
42 43 8.877864 TCATGTCCAAGAATAATAACCAAGTT 57.122 30.769 0.00 0.00 0.00 2.66
43 44 8.906867 CATCATGTCCAAGAATAATAACCAAGT 58.093 33.333 0.00 0.00 0.00 3.16
44 45 7.864379 GCATCATGTCCAAGAATAATAACCAAG 59.136 37.037 0.00 0.00 0.00 3.61
45 46 7.560991 AGCATCATGTCCAAGAATAATAACCAA 59.439 33.333 0.00 0.00 0.00 3.67
46 47 7.013559 CAGCATCATGTCCAAGAATAATAACCA 59.986 37.037 0.00 0.00 0.00 3.67
47 48 7.365741 CAGCATCATGTCCAAGAATAATAACC 58.634 38.462 0.00 0.00 0.00 2.85
48 49 7.229306 TCCAGCATCATGTCCAAGAATAATAAC 59.771 37.037 0.00 0.00 0.00 1.89
49 50 7.289310 TCCAGCATCATGTCCAAGAATAATAA 58.711 34.615 0.00 0.00 0.00 1.40
50 51 6.840527 TCCAGCATCATGTCCAAGAATAATA 58.159 36.000 0.00 0.00 0.00 0.98
51 52 5.698104 TCCAGCATCATGTCCAAGAATAAT 58.302 37.500 0.00 0.00 0.00 1.28
52 53 5.114764 TCCAGCATCATGTCCAAGAATAA 57.885 39.130 0.00 0.00 0.00 1.40
53 54 4.776435 TCCAGCATCATGTCCAAGAATA 57.224 40.909 0.00 0.00 0.00 1.75
54 55 3.657398 TCCAGCATCATGTCCAAGAAT 57.343 42.857 0.00 0.00 0.00 2.40
55 56 3.438216 TTCCAGCATCATGTCCAAGAA 57.562 42.857 0.00 0.00 0.00 2.52
56 57 3.657398 ATTCCAGCATCATGTCCAAGA 57.343 42.857 0.00 0.00 0.00 3.02
57 58 6.264744 AGAATTATTCCAGCATCATGTCCAAG 59.735 38.462 0.78 0.00 0.00 3.61
58 59 6.131264 AGAATTATTCCAGCATCATGTCCAA 58.869 36.000 0.78 0.00 0.00 3.53
59 60 5.698104 AGAATTATTCCAGCATCATGTCCA 58.302 37.500 0.78 0.00 0.00 4.02
60 61 6.263842 TCAAGAATTATTCCAGCATCATGTCC 59.736 38.462 0.78 0.00 0.00 4.02
61 62 7.268199 TCAAGAATTATTCCAGCATCATGTC 57.732 36.000 0.78 0.00 0.00 3.06
62 63 7.341256 ACTTCAAGAATTATTCCAGCATCATGT 59.659 33.333 0.78 0.00 0.00 3.21
63 64 7.713750 ACTTCAAGAATTATTCCAGCATCATG 58.286 34.615 0.78 0.00 0.00 3.07
64 65 7.893124 ACTTCAAGAATTATTCCAGCATCAT 57.107 32.000 0.78 0.00 0.00 2.45
65 66 7.707624 AACTTCAAGAATTATTCCAGCATCA 57.292 32.000 0.78 0.00 0.00 3.07
66 67 8.246180 TGAAACTTCAAGAATTATTCCAGCATC 58.754 33.333 0.78 0.00 33.55 3.91
67 68 8.125978 TGAAACTTCAAGAATTATTCCAGCAT 57.874 30.769 0.78 0.00 33.55 3.79
68 69 7.523293 TGAAACTTCAAGAATTATTCCAGCA 57.477 32.000 0.78 0.00 33.55 4.41
79 80 9.896645 AGAGCAGAATATATGAAACTTCAAGAA 57.103 29.630 0.00 0.00 41.13 2.52
80 81 9.896645 AAGAGCAGAATATATGAAACTTCAAGA 57.103 29.630 0.00 0.00 41.13 3.02
83 84 9.896645 AGAAAGAGCAGAATATATGAAACTTCA 57.103 29.630 0.00 0.00 42.14 3.02
86 87 9.896645 TGAAGAAAGAGCAGAATATATGAAACT 57.103 29.630 0.00 0.00 0.00 2.66
118 119 7.654520 CCATCAGGGATGCAATTAAACTAATTG 59.345 37.037 12.69 12.69 46.93 2.32
119 120 7.345392 ACCATCAGGGATGCAATTAAACTAATT 59.655 33.333 0.00 0.00 38.59 1.40
120 121 6.840705 ACCATCAGGGATGCAATTAAACTAAT 59.159 34.615 0.00 0.00 38.59 1.73
121 122 6.194235 ACCATCAGGGATGCAATTAAACTAA 58.806 36.000 0.00 0.00 38.59 2.24
122 123 5.765510 ACCATCAGGGATGCAATTAAACTA 58.234 37.500 0.00 0.00 38.59 2.24
123 124 4.613437 ACCATCAGGGATGCAATTAAACT 58.387 39.130 0.00 0.00 38.59 2.66
124 125 5.594317 ACTACCATCAGGGATGCAATTAAAC 59.406 40.000 0.00 0.00 38.59 2.01
125 126 5.765510 ACTACCATCAGGGATGCAATTAAA 58.234 37.500 0.00 0.00 38.59 1.52
126 127 5.387113 ACTACCATCAGGGATGCAATTAA 57.613 39.130 0.00 0.00 38.59 1.40
127 128 5.387113 AACTACCATCAGGGATGCAATTA 57.613 39.130 0.00 0.00 38.59 1.40
128 129 3.959495 ACTACCATCAGGGATGCAATT 57.041 42.857 0.00 0.00 38.59 2.32
129 130 3.959495 AACTACCATCAGGGATGCAAT 57.041 42.857 0.00 0.00 38.59 3.56
130 131 3.737559 AAACTACCATCAGGGATGCAA 57.262 42.857 0.00 0.00 38.59 4.08
131 132 3.737559 AAAACTACCATCAGGGATGCA 57.262 42.857 0.00 0.00 38.59 3.96
132 133 5.036117 TCTAAAACTACCATCAGGGATGC 57.964 43.478 0.69 0.00 38.59 3.91
133 134 8.378565 ACATATCTAAAACTACCATCAGGGATG 58.621 37.037 0.00 0.00 41.15 3.51
134 135 8.511748 ACATATCTAAAACTACCATCAGGGAT 57.488 34.615 0.00 0.00 41.15 3.85
135 136 7.931015 ACATATCTAAAACTACCATCAGGGA 57.069 36.000 0.00 0.00 41.15 4.20
136 137 7.819900 GCTACATATCTAAAACTACCATCAGGG 59.180 40.741 0.00 0.00 44.81 4.45
137 138 8.367911 TGCTACATATCTAAAACTACCATCAGG 58.632 37.037 0.00 0.00 42.21 3.86
138 139 9.764363 TTGCTACATATCTAAAACTACCATCAG 57.236 33.333 0.00 0.00 0.00 2.90
147 148 9.788960 CCCTTTCTTTTGCTACATATCTAAAAC 57.211 33.333 0.00 0.00 0.00 2.43
148 149 9.528489 ACCCTTTCTTTTGCTACATATCTAAAA 57.472 29.630 0.00 0.00 0.00 1.52
149 150 9.174166 GACCCTTTCTTTTGCTACATATCTAAA 57.826 33.333 0.00 0.00 0.00 1.85
150 151 8.325787 TGACCCTTTCTTTTGCTACATATCTAA 58.674 33.333 0.00 0.00 0.00 2.10
151 152 7.857456 TGACCCTTTCTTTTGCTACATATCTA 58.143 34.615 0.00 0.00 0.00 1.98
152 153 6.721318 TGACCCTTTCTTTTGCTACATATCT 58.279 36.000 0.00 0.00 0.00 1.98
153 154 7.391148 TTGACCCTTTCTTTTGCTACATATC 57.609 36.000 0.00 0.00 0.00 1.63
154 155 7.961326 ATTGACCCTTTCTTTTGCTACATAT 57.039 32.000 0.00 0.00 0.00 1.78
155 156 7.775053 AATTGACCCTTTCTTTTGCTACATA 57.225 32.000 0.00 0.00 0.00 2.29
156 157 6.670695 AATTGACCCTTTCTTTTGCTACAT 57.329 33.333 0.00 0.00 0.00 2.29
157 158 6.547880 TGTAATTGACCCTTTCTTTTGCTACA 59.452 34.615 0.00 0.00 0.00 2.74
158 159 6.861572 GTGTAATTGACCCTTTCTTTTGCTAC 59.138 38.462 0.00 0.00 0.00 3.58
159 160 6.547880 TGTGTAATTGACCCTTTCTTTTGCTA 59.452 34.615 0.00 0.00 0.00 3.49
160 161 5.362430 TGTGTAATTGACCCTTTCTTTTGCT 59.638 36.000 0.00 0.00 0.00 3.91
161 162 5.596845 TGTGTAATTGACCCTTTCTTTTGC 58.403 37.500 0.00 0.00 0.00 3.68
162 163 7.710475 ACAATGTGTAATTGACCCTTTCTTTTG 59.290 33.333 5.13 0.00 33.51 2.44
163 164 7.791029 ACAATGTGTAATTGACCCTTTCTTTT 58.209 30.769 5.13 0.00 33.51 2.27
164 165 7.360113 ACAATGTGTAATTGACCCTTTCTTT 57.640 32.000 5.13 0.00 33.51 2.52
165 166 6.976934 ACAATGTGTAATTGACCCTTTCTT 57.023 33.333 5.13 0.00 33.51 2.52
166 167 6.239289 CCAACAATGTGTAATTGACCCTTTCT 60.239 38.462 5.13 0.00 33.51 2.52
167 168 5.925969 CCAACAATGTGTAATTGACCCTTTC 59.074 40.000 5.13 0.00 33.51 2.62
168 169 5.221621 CCCAACAATGTGTAATTGACCCTTT 60.222 40.000 5.13 0.00 33.51 3.11
169 170 4.283212 CCCAACAATGTGTAATTGACCCTT 59.717 41.667 5.13 0.00 33.51 3.95
170 171 3.831911 CCCAACAATGTGTAATTGACCCT 59.168 43.478 5.13 0.00 33.51 4.34
171 172 3.616317 GCCCAACAATGTGTAATTGACCC 60.616 47.826 5.13 0.00 33.51 4.46
172 173 3.584834 GCCCAACAATGTGTAATTGACC 58.415 45.455 5.13 0.00 33.51 4.02
173 174 3.584834 GGCCCAACAATGTGTAATTGAC 58.415 45.455 5.13 0.00 33.51 3.18
174 175 2.564947 GGGCCCAACAATGTGTAATTGA 59.435 45.455 19.95 0.00 33.51 2.57
175 176 2.566724 AGGGCCCAACAATGTGTAATTG 59.433 45.455 27.56 0.00 35.29 2.32
176 177 2.831526 GAGGGCCCAACAATGTGTAATT 59.168 45.455 27.56 0.00 0.00 1.40
177 178 2.225242 TGAGGGCCCAACAATGTGTAAT 60.225 45.455 27.56 0.00 0.00 1.89
178 179 1.145945 TGAGGGCCCAACAATGTGTAA 59.854 47.619 27.56 0.00 0.00 2.41
179 180 0.774276 TGAGGGCCCAACAATGTGTA 59.226 50.000 27.56 0.00 0.00 2.90
180 181 0.827507 GTGAGGGCCCAACAATGTGT 60.828 55.000 27.56 0.00 0.00 3.72
181 182 1.865788 CGTGAGGGCCCAACAATGTG 61.866 60.000 27.56 10.37 0.00 3.21
182 183 1.603455 CGTGAGGGCCCAACAATGT 60.603 57.895 27.56 0.00 0.00 2.71
183 184 3.277133 CGTGAGGGCCCAACAATG 58.723 61.111 27.56 15.12 0.00 2.82
195 196 3.132289 TCTTCTTACTATTGGGCCGTGAG 59.868 47.826 0.00 0.00 0.00 3.51
196 197 3.101437 TCTTCTTACTATTGGGCCGTGA 58.899 45.455 0.00 0.00 0.00 4.35
197 198 3.536956 TCTTCTTACTATTGGGCCGTG 57.463 47.619 0.00 0.00 0.00 4.94
198 199 3.967987 AGATCTTCTTACTATTGGGCCGT 59.032 43.478 0.00 0.00 0.00 5.68
199 200 4.608948 AGATCTTCTTACTATTGGGCCG 57.391 45.455 0.00 0.00 0.00 6.13
200 201 6.181206 AGAAGATCTTCTTACTATTGGGCC 57.819 41.667 28.70 0.00 46.95 5.80
213 214 3.872182 GCGACCCCTAAAAGAAGATCTTC 59.128 47.826 25.20 25.20 35.27 2.87
214 215 3.263425 TGCGACCCCTAAAAGAAGATCTT 59.737 43.478 7.95 7.95 38.59 2.40
215 216 2.838202 TGCGACCCCTAAAAGAAGATCT 59.162 45.455 0.00 0.00 0.00 2.75
216 217 3.198872 CTGCGACCCCTAAAAGAAGATC 58.801 50.000 0.00 0.00 0.00 2.75
217 218 2.681097 GCTGCGACCCCTAAAAGAAGAT 60.681 50.000 0.00 0.00 0.00 2.40
218 219 1.338769 GCTGCGACCCCTAAAAGAAGA 60.339 52.381 0.00 0.00 0.00 2.87
219 220 1.087501 GCTGCGACCCCTAAAAGAAG 58.912 55.000 0.00 0.00 0.00 2.85
220 221 0.672401 CGCTGCGACCCCTAAAAGAA 60.672 55.000 18.66 0.00 0.00 2.52
221 222 1.079405 CGCTGCGACCCCTAAAAGA 60.079 57.895 18.66 0.00 0.00 2.52
222 223 2.106683 CCGCTGCGACCCCTAAAAG 61.107 63.158 25.45 0.00 0.00 2.27
223 224 1.543065 TACCGCTGCGACCCCTAAAA 61.543 55.000 25.45 0.00 0.00 1.52
224 225 1.983481 TACCGCTGCGACCCCTAAA 60.983 57.895 25.45 0.00 0.00 1.85
225 226 2.362760 TACCGCTGCGACCCCTAA 60.363 61.111 25.45 0.00 0.00 2.69
226 227 3.142838 GTACCGCTGCGACCCCTA 61.143 66.667 25.45 1.62 0.00 3.53
229 230 4.424566 TTCGTACCGCTGCGACCC 62.425 66.667 25.45 9.08 36.82 4.46
230 231 2.609183 ATCTTCGTACCGCTGCGACC 62.609 60.000 25.45 9.45 36.82 4.79
231 232 0.028505 TATCTTCGTACCGCTGCGAC 59.971 55.000 25.45 13.76 36.82 5.19
232 233 0.734309 TTATCTTCGTACCGCTGCGA 59.266 50.000 25.45 0.32 35.17 5.10
233 234 1.121240 CTTATCTTCGTACCGCTGCG 58.879 55.000 16.34 16.34 0.00 5.18
234 235 2.205307 ACTTATCTTCGTACCGCTGC 57.795 50.000 0.00 0.00 0.00 5.25
235 236 2.782192 CGAACTTATCTTCGTACCGCTG 59.218 50.000 0.00 0.00 38.58 5.18
236 237 3.062323 CGAACTTATCTTCGTACCGCT 57.938 47.619 0.00 0.00 38.58 5.52
243 244 2.165845 AGGACCCACGAACTTATCTTCG 59.834 50.000 0.00 0.00 46.90 3.79
244 245 3.889520 AGGACCCACGAACTTATCTTC 57.110 47.619 0.00 0.00 0.00 2.87
245 246 3.055312 GGAAGGACCCACGAACTTATCTT 60.055 47.826 0.00 0.00 0.00 2.40
246 247 2.500504 GGAAGGACCCACGAACTTATCT 59.499 50.000 0.00 0.00 0.00 1.98
247 248 2.235402 TGGAAGGACCCACGAACTTATC 59.765 50.000 0.00 0.00 38.00 1.75
248 249 2.262637 TGGAAGGACCCACGAACTTAT 58.737 47.619 0.00 0.00 38.00 1.73
249 250 1.719529 TGGAAGGACCCACGAACTTA 58.280 50.000 0.00 0.00 38.00 2.24
250 251 1.064825 ATGGAAGGACCCACGAACTT 58.935 50.000 0.00 0.00 39.34 2.66
251 252 0.324943 CATGGAAGGACCCACGAACT 59.675 55.000 0.00 0.00 39.34 3.01
252 253 1.305930 GCATGGAAGGACCCACGAAC 61.306 60.000 0.00 0.00 39.34 3.95
253 254 1.002624 GCATGGAAGGACCCACGAA 60.003 57.895 0.00 0.00 39.34 3.85
254 255 2.220586 TGCATGGAAGGACCCACGA 61.221 57.895 0.00 0.00 39.34 4.35
255 256 2.040544 GTGCATGGAAGGACCCACG 61.041 63.158 0.00 0.00 39.34 4.94
256 257 1.678970 GGTGCATGGAAGGACCCAC 60.679 63.158 0.00 0.00 43.47 4.61
257 258 2.763215 GGTGCATGGAAGGACCCA 59.237 61.111 0.00 0.00 43.47 4.51
260 261 3.073274 AGTTAAGGTGCATGGAAGGAC 57.927 47.619 0.00 0.00 0.00 3.85
261 262 5.450818 AATAGTTAAGGTGCATGGAAGGA 57.549 39.130 0.00 0.00 0.00 3.36
262 263 6.071391 ACAAAATAGTTAAGGTGCATGGAAGG 60.071 38.462 0.00 0.00 0.00 3.46
263 264 6.924111 ACAAAATAGTTAAGGTGCATGGAAG 58.076 36.000 0.00 0.00 0.00 3.46
264 265 6.909550 ACAAAATAGTTAAGGTGCATGGAA 57.090 33.333 0.00 0.00 0.00 3.53
265 266 6.909550 AACAAAATAGTTAAGGTGCATGGA 57.090 33.333 0.00 0.00 0.00 3.41
266 267 6.368516 CCAAACAAAATAGTTAAGGTGCATGG 59.631 38.462 0.00 0.00 0.00 3.66
267 268 6.368516 CCCAAACAAAATAGTTAAGGTGCATG 59.631 38.462 0.00 0.00 0.00 4.06
268 269 6.463360 CCCAAACAAAATAGTTAAGGTGCAT 58.537 36.000 0.00 0.00 0.00 3.96
269 270 5.740513 GCCCAAACAAAATAGTTAAGGTGCA 60.741 40.000 0.00 0.00 31.41 4.57
270 271 4.688879 GCCCAAACAAAATAGTTAAGGTGC 59.311 41.667 0.00 0.00 0.00 5.01
271 272 5.221541 TGGCCCAAACAAAATAGTTAAGGTG 60.222 40.000 0.00 0.00 0.00 4.00
272 273 4.902448 TGGCCCAAACAAAATAGTTAAGGT 59.098 37.500 0.00 0.00 0.00 3.50
273 274 5.476091 TGGCCCAAACAAAATAGTTAAGG 57.524 39.130 0.00 0.00 0.00 2.69
274 275 5.408299 GCTTGGCCCAAACAAAATAGTTAAG 59.592 40.000 0.00 0.00 0.00 1.85
275 276 5.301555 GCTTGGCCCAAACAAAATAGTTAA 58.698 37.500 0.00 0.00 0.00 2.01
276 277 4.262678 GGCTTGGCCCAAACAAAATAGTTA 60.263 41.667 0.00 0.00 44.06 2.24
277 278 3.495983 GGCTTGGCCCAAACAAAATAGTT 60.496 43.478 0.00 0.00 44.06 2.24
278 279 2.038426 GGCTTGGCCCAAACAAAATAGT 59.962 45.455 0.00 0.00 44.06 2.12
279 280 2.698803 GGCTTGGCCCAAACAAAATAG 58.301 47.619 0.00 0.00 44.06 1.73
280 281 2.849294 GGCTTGGCCCAAACAAAATA 57.151 45.000 0.00 0.00 44.06 1.40
281 282 3.723772 GGCTTGGCCCAAACAAAAT 57.276 47.368 0.00 0.00 44.06 1.82
311 312 7.663905 GGTAGCTTGGTTGGGAAATTTATTTTT 59.336 33.333 0.00 0.00 0.00 1.94
312 313 7.165485 GGTAGCTTGGTTGGGAAATTTATTTT 58.835 34.615 0.00 0.00 0.00 1.82
313 314 6.271159 TGGTAGCTTGGTTGGGAAATTTATTT 59.729 34.615 0.00 0.00 0.00 1.40
314 315 5.782845 TGGTAGCTTGGTTGGGAAATTTATT 59.217 36.000 0.00 0.00 0.00 1.40
315 316 5.337788 TGGTAGCTTGGTTGGGAAATTTAT 58.662 37.500 0.00 0.00 0.00 1.40
316 317 4.742012 TGGTAGCTTGGTTGGGAAATTTA 58.258 39.130 0.00 0.00 0.00 1.40
317 318 3.582164 TGGTAGCTTGGTTGGGAAATTT 58.418 40.909 0.00 0.00 0.00 1.82
318 319 3.252554 TGGTAGCTTGGTTGGGAAATT 57.747 42.857 0.00 0.00 0.00 1.82
319 320 2.897326 GTTGGTAGCTTGGTTGGGAAAT 59.103 45.455 0.00 0.00 0.00 2.17
320 321 2.091555 AGTTGGTAGCTTGGTTGGGAAA 60.092 45.455 0.00 0.00 0.00 3.13
321 322 1.497286 AGTTGGTAGCTTGGTTGGGAA 59.503 47.619 0.00 0.00 0.00 3.97
322 323 1.145571 AGTTGGTAGCTTGGTTGGGA 58.854 50.000 0.00 0.00 0.00 4.37
323 324 2.871096 TAGTTGGTAGCTTGGTTGGG 57.129 50.000 0.00 0.00 0.00 4.12
324 325 3.941483 CAGATAGTTGGTAGCTTGGTTGG 59.059 47.826 0.00 0.00 0.00 3.77
325 326 4.579869 ACAGATAGTTGGTAGCTTGGTTG 58.420 43.478 0.00 0.00 0.00 3.77
326 327 4.910458 ACAGATAGTTGGTAGCTTGGTT 57.090 40.909 0.00 0.00 0.00 3.67
327 328 6.368779 TTTACAGATAGTTGGTAGCTTGGT 57.631 37.500 0.00 0.00 0.00 3.67
328 329 7.681939 TTTTTACAGATAGTTGGTAGCTTGG 57.318 36.000 0.00 0.00 0.00 3.61
331 332 9.392259 GGTAATTTTTACAGATAGTTGGTAGCT 57.608 33.333 0.00 0.00 0.00 3.32
332 333 9.169592 TGGTAATTTTTACAGATAGTTGGTAGC 57.830 33.333 0.38 0.00 0.00 3.58
352 353 9.688091 ACTTTTTGGGTATTTTTGTTTGGTAAT 57.312 25.926 0.00 0.00 0.00 1.89
353 354 9.516546 AACTTTTTGGGTATTTTTGTTTGGTAA 57.483 25.926 0.00 0.00 0.00 2.85
355 356 9.516546 TTAACTTTTTGGGTATTTTTGTTTGGT 57.483 25.926 0.00 0.00 0.00 3.67
356 357 9.776158 GTTAACTTTTTGGGTATTTTTGTTTGG 57.224 29.630 0.00 0.00 0.00 3.28
359 360 9.503399 TGTGTTAACTTTTTGGGTATTTTTGTT 57.497 25.926 7.22 0.00 0.00 2.83
360 361 9.503399 TTGTGTTAACTTTTTGGGTATTTTTGT 57.497 25.926 7.22 0.00 0.00 2.83
427 428 8.943002 TGGGCGAATTTTTAAGTGTTTTTAAAA 58.057 25.926 0.00 0.00 39.47 1.52
428 429 8.488651 TGGGCGAATTTTTAAGTGTTTTTAAA 57.511 26.923 0.00 0.00 32.31 1.52
429 430 8.488651 TTGGGCGAATTTTTAAGTGTTTTTAA 57.511 26.923 0.00 0.00 0.00 1.52
430 431 8.488651 TTTGGGCGAATTTTTAAGTGTTTTTA 57.511 26.923 0.00 0.00 0.00 1.52
431 432 6.986904 TTGGGCGAATTTTTAAGTGTTTTT 57.013 29.167 0.00 0.00 0.00 1.94
432 433 6.986904 TTTGGGCGAATTTTTAAGTGTTTT 57.013 29.167 0.00 0.00 0.00 2.43
433 434 6.986904 TTTTGGGCGAATTTTTAAGTGTTT 57.013 29.167 0.00 0.00 0.00 2.83
434 435 6.986904 TTTTTGGGCGAATTTTTAAGTGTT 57.013 29.167 0.00 0.00 0.00 3.32
575 576 9.892130 TGGGTAATTTTTCGCCATTTTTAATAT 57.108 25.926 0.00 0.00 0.00 1.28
576 577 9.892130 ATGGGTAATTTTTCGCCATTTTTAATA 57.108 25.926 0.00 0.00 0.00 0.98
577 578 8.800370 ATGGGTAATTTTTCGCCATTTTTAAT 57.200 26.923 0.00 0.00 0.00 1.40
578 579 7.878127 TGATGGGTAATTTTTCGCCATTTTTAA 59.122 29.630 0.00 0.00 0.00 1.52
579 580 7.386851 TGATGGGTAATTTTTCGCCATTTTTA 58.613 30.769 0.00 0.00 0.00 1.52
580 581 6.234177 TGATGGGTAATTTTTCGCCATTTTT 58.766 32.000 0.00 0.00 0.00 1.94
581 582 5.799213 TGATGGGTAATTTTTCGCCATTTT 58.201 33.333 0.00 0.00 0.00 1.82
582 583 5.413309 TGATGGGTAATTTTTCGCCATTT 57.587 34.783 0.00 0.00 0.00 2.32
583 584 5.413309 TTGATGGGTAATTTTTCGCCATT 57.587 34.783 0.00 0.00 0.00 3.16
584 585 4.680440 GCTTGATGGGTAATTTTTCGCCAT 60.680 41.667 0.00 0.00 0.00 4.40
585 586 3.367910 GCTTGATGGGTAATTTTTCGCCA 60.368 43.478 0.00 0.00 0.00 5.69
586 587 3.186909 GCTTGATGGGTAATTTTTCGCC 58.813 45.455 0.00 0.00 0.00 5.54
587 588 3.843999 TGCTTGATGGGTAATTTTTCGC 58.156 40.909 0.00 0.00 0.00 4.70
588 589 4.082245 ACCTGCTTGATGGGTAATTTTTCG 60.082 41.667 0.00 0.00 0.00 3.46
589 590 5.405935 ACCTGCTTGATGGGTAATTTTTC 57.594 39.130 0.00 0.00 0.00 2.29
590 591 5.543790 AGAACCTGCTTGATGGGTAATTTTT 59.456 36.000 0.00 0.00 32.50 1.94
591 592 5.086621 AGAACCTGCTTGATGGGTAATTTT 58.913 37.500 0.00 0.00 32.50 1.82
592 593 4.677182 AGAACCTGCTTGATGGGTAATTT 58.323 39.130 0.00 0.00 32.50 1.82
593 594 4.322057 AGAACCTGCTTGATGGGTAATT 57.678 40.909 0.00 0.00 32.50 1.40
594 595 5.132648 TGATAGAACCTGCTTGATGGGTAAT 59.867 40.000 0.00 0.00 32.50 1.89
595 596 4.473196 TGATAGAACCTGCTTGATGGGTAA 59.527 41.667 0.00 0.00 32.50 2.85
596 597 4.037222 TGATAGAACCTGCTTGATGGGTA 58.963 43.478 0.00 0.00 32.50 3.69
597 598 2.846206 TGATAGAACCTGCTTGATGGGT 59.154 45.455 0.00 0.00 34.47 4.51
598 599 3.565764 TGATAGAACCTGCTTGATGGG 57.434 47.619 0.00 0.00 0.00 4.00
599 600 6.461110 AAAATGATAGAACCTGCTTGATGG 57.539 37.500 0.00 0.00 0.00 3.51
600 601 9.674824 GATAAAAATGATAGAACCTGCTTGATG 57.325 33.333 0.00 0.00 0.00 3.07
601 602 8.562892 CGATAAAAATGATAGAACCTGCTTGAT 58.437 33.333 0.00 0.00 0.00 2.57
602 603 7.467267 GCGATAAAAATGATAGAACCTGCTTGA 60.467 37.037 0.00 0.00 0.00 3.02
603 604 6.634436 GCGATAAAAATGATAGAACCTGCTTG 59.366 38.462 0.00 0.00 0.00 4.01
604 605 6.238759 GGCGATAAAAATGATAGAACCTGCTT 60.239 38.462 0.00 0.00 0.00 3.91
605 606 5.239525 GGCGATAAAAATGATAGAACCTGCT 59.760 40.000 0.00 0.00 0.00 4.24
606 607 5.452777 GGCGATAAAAATGATAGAACCTGC 58.547 41.667 0.00 0.00 0.00 4.85
607 608 5.334105 CGGGCGATAAAAATGATAGAACCTG 60.334 44.000 0.00 0.00 0.00 4.00
608 609 4.755123 CGGGCGATAAAAATGATAGAACCT 59.245 41.667 0.00 0.00 0.00 3.50
609 610 4.083484 CCGGGCGATAAAAATGATAGAACC 60.083 45.833 0.00 0.00 0.00 3.62
610 611 4.514066 ACCGGGCGATAAAAATGATAGAAC 59.486 41.667 6.32 0.00 0.00 3.01
611 612 4.513692 CACCGGGCGATAAAAATGATAGAA 59.486 41.667 6.32 0.00 0.00 2.10
612 613 4.062293 CACCGGGCGATAAAAATGATAGA 58.938 43.478 6.32 0.00 0.00 1.98
613 614 3.364964 GCACCGGGCGATAAAAATGATAG 60.365 47.826 6.32 0.00 0.00 2.08
614 615 2.550606 GCACCGGGCGATAAAAATGATA 59.449 45.455 6.32 0.00 0.00 2.15
615 616 1.336755 GCACCGGGCGATAAAAATGAT 59.663 47.619 6.32 0.00 0.00 2.45
616 617 0.736053 GCACCGGGCGATAAAAATGA 59.264 50.000 6.32 0.00 0.00 2.57
617 618 3.250220 GCACCGGGCGATAAAAATG 57.750 52.632 6.32 0.00 0.00 2.32
633 634 3.600694 AAATGCCCGTGCGTTGCA 61.601 55.556 0.00 8.11 45.88 4.08
634 635 2.465097 TACAAATGCCCGTGCGTTGC 62.465 55.000 0.00 0.00 45.88 4.17
635 636 0.727793 GTACAAATGCCCGTGCGTTG 60.728 55.000 0.00 1.29 45.88 4.10
637 638 0.037139 TAGTACAAATGCCCGTGCGT 60.037 50.000 0.00 0.00 41.78 5.24
638 639 0.650512 CTAGTACAAATGCCCGTGCG 59.349 55.000 0.00 0.00 41.78 5.34
639 640 1.734163 ACTAGTACAAATGCCCGTGC 58.266 50.000 0.00 0.00 38.26 5.34
640 641 7.724305 ATTATTACTAGTACAAATGCCCGTG 57.276 36.000 0.91 0.00 0.00 4.94
672 673 9.490379 CGTGCTTTATTAGTAGGGAAAGATTAT 57.510 33.333 0.00 0.00 31.83 1.28
1117 1122 0.101399 CTCGCGAAGTAGAGCCACAT 59.899 55.000 11.33 0.00 0.00 3.21
1615 1641 5.053145 TCTGAACTCTGAAGAAAGCAGTTC 58.947 41.667 3.64 3.64 42.19 3.01
2031 3335 1.708341 AGGTCAACAAGGCTTTGCAT 58.292 45.000 8.71 0.00 37.85 3.96
2313 4610 1.789078 CTCTGTTTGGCTGCGTGCTT 61.789 55.000 0.00 0.00 42.39 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.