Multiple sequence alignment - TraesCS2A01G228800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G228800 chr2A 100.000 3485 0 0 1 3485 256125269 256128753 0.000000e+00 6436.0
1 TraesCS2A01G228800 chr2D 96.258 2138 38 9 659 2763 245377401 245379529 0.000000e+00 3467.0
2 TraesCS2A01G228800 chr2D 88.350 618 47 16 1 604 602575905 602576511 0.000000e+00 719.0
3 TraesCS2A01G228800 chr2D 93.373 332 17 3 2879 3208 245379526 245379854 1.450000e-133 486.0
4 TraesCS2A01G228800 chr2D 92.481 133 4 3 2757 2883 536091156 536091024 5.940000e-43 185.0
5 TraesCS2A01G228800 chr2B 94.341 2138 69 15 661 2763 347079847 347077727 0.000000e+00 3230.0
6 TraesCS2A01G228800 chr2B 91.045 335 24 2 2880 3208 347077729 347077395 6.860000e-122 448.0
7 TraesCS2A01G228800 chr2B 91.791 134 5 3 2758 2885 45693757 45693624 7.680000e-42 182.0
8 TraesCS2A01G228800 chr4A 91.143 621 49 4 1 618 505798113 505797496 0.000000e+00 837.0
9 TraesCS2A01G228800 chr7D 87.619 630 65 9 1 622 330089785 330089161 0.000000e+00 719.0
10 TraesCS2A01G228800 chr7D 92.969 128 3 3 2760 2881 154192997 154193124 7.680000e-42 182.0
11 TraesCS2A01G228800 chr1D 87.719 627 62 11 3 618 25573711 25574333 0.000000e+00 717.0
12 TraesCS2A01G228800 chr5A 87.107 636 62 15 1 622 676368834 676368205 0.000000e+00 702.0
13 TraesCS2A01G228800 chr5A 87.143 630 62 11 1 622 363857340 363856722 0.000000e+00 697.0
14 TraesCS2A01G228800 chr5A 84.091 220 23 9 3268 3485 469266163 469265954 5.900000e-48 202.0
15 TraesCS2A01G228800 chr5A 90.411 73 7 0 2261 2333 609195561 609195633 2.860000e-16 97.1
16 TraesCS2A01G228800 chr3B 87.087 635 60 15 1 618 797636841 797637470 0.000000e+00 699.0
17 TraesCS2A01G228800 chr3B 90.909 143 5 5 2756 2890 741865981 741865839 5.940000e-43 185.0
18 TraesCS2A01G228800 chr1B 86.909 634 60 12 1 618 424555069 424555695 0.000000e+00 689.0
19 TraesCS2A01G228800 chr1B 89.510 143 7 5 2760 2896 571434299 571434439 1.290000e-39 174.0
20 TraesCS2A01G228800 chr3D 86.364 616 73 9 8 618 3192088 3191479 0.000000e+00 662.0
21 TraesCS2A01G228800 chr3D 93.023 129 3 3 2760 2882 382748012 382747884 2.140000e-42 183.0
22 TraesCS2A01G228800 chr3D 90.210 143 6 4 2760 2896 283321251 283321111 2.760000e-41 180.0
23 TraesCS2A01G228800 chr3D 90.071 141 6 5 2757 2889 496172753 496172893 3.570000e-40 176.0
24 TraesCS2A01G228800 chr3A 90.909 220 17 3 3268 3485 194702518 194702736 3.400000e-75 292.0
25 TraesCS2A01G228800 chr3A 90.345 145 11 2 3344 3485 653912293 653912437 1.650000e-43 187.0
26 TraesCS2A01G228800 chr7B 89.640 222 19 3 3268 3485 3362312 3362533 2.650000e-71 279.0
27 TraesCS2A01G228800 chr7A 89.091 220 21 2 3269 3485 548579409 548579628 1.590000e-68 270.0
28 TraesCS2A01G228800 chr6A 88.636 220 22 2 3268 3485 575142078 575142296 7.420000e-67 265.0
29 TraesCS2A01G228800 chr5B 88.235 221 23 2 3268 3485 474974507 474974287 9.590000e-66 261.0
30 TraesCS2A01G228800 chr5B 84.305 223 29 5 3268 3485 671867197 671866976 2.720000e-51 213.0
31 TraesCS2A01G228800 chr5B 91.781 73 6 0 2261 2333 601326506 601326578 6.150000e-18 102.0
32 TraesCS2A01G228800 chr4D 86.802 197 23 2 3272 3466 459925489 459925684 2.110000e-52 217.0
33 TraesCS2A01G228800 chr1A 90.972 144 4 6 2760 2897 47210026 47209886 5.940000e-43 185.0
34 TraesCS2A01G228800 chr5D 90.411 73 7 0 2261 2333 488344351 488344423 2.860000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G228800 chr2A 256125269 256128753 3484 False 6436.0 6436 100.0000 1 3485 1 chr2A.!!$F1 3484
1 TraesCS2A01G228800 chr2D 245377401 245379854 2453 False 1976.5 3467 94.8155 659 3208 2 chr2D.!!$F2 2549
2 TraesCS2A01G228800 chr2D 602575905 602576511 606 False 719.0 719 88.3500 1 604 1 chr2D.!!$F1 603
3 TraesCS2A01G228800 chr2B 347077395 347079847 2452 True 1839.0 3230 92.6930 661 3208 2 chr2B.!!$R2 2547
4 TraesCS2A01G228800 chr4A 505797496 505798113 617 True 837.0 837 91.1430 1 618 1 chr4A.!!$R1 617
5 TraesCS2A01G228800 chr7D 330089161 330089785 624 True 719.0 719 87.6190 1 622 1 chr7D.!!$R1 621
6 TraesCS2A01G228800 chr1D 25573711 25574333 622 False 717.0 717 87.7190 3 618 1 chr1D.!!$F1 615
7 TraesCS2A01G228800 chr5A 676368205 676368834 629 True 702.0 702 87.1070 1 622 1 chr5A.!!$R3 621
8 TraesCS2A01G228800 chr5A 363856722 363857340 618 True 697.0 697 87.1430 1 622 1 chr5A.!!$R1 621
9 TraesCS2A01G228800 chr3B 797636841 797637470 629 False 699.0 699 87.0870 1 618 1 chr3B.!!$F1 617
10 TraesCS2A01G228800 chr1B 424555069 424555695 626 False 689.0 689 86.9090 1 618 1 chr1B.!!$F1 617
11 TraesCS2A01G228800 chr3D 3191479 3192088 609 True 662.0 662 86.3640 8 618 1 chr3D.!!$R1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 702 0.461961 CTGAAGGCGGGGAGTAAGAG 59.538 60.000 0.00 0.0 0.00 2.85 F
649 703 1.144276 GAAGGCGGGGAGTAAGAGC 59.856 63.158 0.00 0.0 0.00 4.09 F
1770 1856 0.032017 CCAGTAGAGGCACCTACCCT 60.032 60.000 11.74 0.0 39.77 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1553 1634 0.808755 GTTTGGGCAATCAGGTACCG 59.191 55.000 6.18 1.56 0.00 4.02 R
2386 2479 2.607635 TCAGTCAAACGTCAAGTTCTGC 59.392 45.455 0.00 0.00 43.37 4.26 R
2763 2860 1.173913 GACAATTTTGGGACGGAGGG 58.826 55.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.764466 CCTCGTCAGGCCGAAGCT 61.764 66.667 0.00 0.00 39.73 3.74
100 103 2.109181 GAGGATGCCCTACGGTGC 59.891 66.667 0.00 0.00 44.53 5.01
349 392 1.478510 CTCCTCGGCATGTAGAACTGT 59.521 52.381 0.00 0.00 0.00 3.55
352 395 3.512329 TCCTCGGCATGTAGAACTGTAAA 59.488 43.478 0.00 0.00 0.00 2.01
357 404 3.259064 GCATGTAGAACTGTAAAGGCGA 58.741 45.455 0.00 0.00 0.00 5.54
470 520 1.265635 TCGCCGAAGTTTGGTTGAATG 59.734 47.619 10.98 0.00 0.00 2.67
487 537 4.250431 GTGCGCCGTGTTTGTGCT 62.250 61.111 4.18 0.00 39.88 4.40
501 551 7.169982 CCGTGTTTGTGCTGGAATTAAAATTTA 59.830 33.333 0.00 0.00 0.00 1.40
502 552 8.543774 CGTGTTTGTGCTGGAATTAAAATTTAA 58.456 29.630 0.25 0.25 0.00 1.52
591 643 1.816074 AAGGGACGATTTTTAGCGCA 58.184 45.000 11.47 0.00 0.00 6.09
595 648 3.128349 GGGACGATTTTTAGCGCATCTA 58.872 45.455 11.47 0.00 0.00 1.98
623 677 5.902613 CAATGGTTGGAGATGCTTTTAGA 57.097 39.130 0.00 0.00 0.00 2.10
624 678 6.461110 CAATGGTTGGAGATGCTTTTAGAT 57.539 37.500 0.00 0.00 0.00 1.98
625 679 6.270815 CAATGGTTGGAGATGCTTTTAGATG 58.729 40.000 0.00 0.00 0.00 2.90
626 680 4.272489 TGGTTGGAGATGCTTTTAGATGG 58.728 43.478 0.00 0.00 0.00 3.51
627 681 3.067320 GGTTGGAGATGCTTTTAGATGGC 59.933 47.826 0.00 0.00 0.00 4.40
628 682 2.564771 TGGAGATGCTTTTAGATGGCG 58.435 47.619 0.00 0.00 0.00 5.69
629 683 1.265365 GGAGATGCTTTTAGATGGCGC 59.735 52.381 0.00 0.00 0.00 6.53
630 684 2.216898 GAGATGCTTTTAGATGGCGCT 58.783 47.619 7.64 0.00 0.00 5.92
631 685 1.945394 AGATGCTTTTAGATGGCGCTG 59.055 47.619 7.64 0.00 0.00 5.18
632 686 1.942657 GATGCTTTTAGATGGCGCTGA 59.057 47.619 7.64 0.00 0.00 4.26
633 687 1.819928 TGCTTTTAGATGGCGCTGAA 58.180 45.000 7.64 0.00 0.00 3.02
634 688 1.739466 TGCTTTTAGATGGCGCTGAAG 59.261 47.619 7.64 2.74 0.00 3.02
635 689 1.064654 GCTTTTAGATGGCGCTGAAGG 59.935 52.381 7.64 0.00 0.00 3.46
636 690 1.064654 CTTTTAGATGGCGCTGAAGGC 59.935 52.381 7.64 0.00 37.64 4.35
645 699 2.987125 GCTGAAGGCGGGGAGTAA 59.013 61.111 0.00 0.00 0.00 2.24
646 700 1.153349 GCTGAAGGCGGGGAGTAAG 60.153 63.158 0.00 0.00 0.00 2.34
647 701 1.614241 GCTGAAGGCGGGGAGTAAGA 61.614 60.000 0.00 0.00 0.00 2.10
648 702 0.461961 CTGAAGGCGGGGAGTAAGAG 59.538 60.000 0.00 0.00 0.00 2.85
649 703 1.144276 GAAGGCGGGGAGTAAGAGC 59.856 63.158 0.00 0.00 0.00 4.09
650 704 1.306226 AAGGCGGGGAGTAAGAGCT 60.306 57.895 0.00 0.00 0.00 4.09
651 705 1.331399 AAGGCGGGGAGTAAGAGCTC 61.331 60.000 5.27 5.27 34.89 4.09
656 710 4.816990 GGAGTAAGAGCTCCGTGC 57.183 61.111 10.93 2.26 44.64 5.34
761 815 3.646715 TTGTCCCCGGCCCTTCTG 61.647 66.667 0.00 0.00 0.00 3.02
801 855 1.301401 CGTTCTCCCAGCCGTCAAA 60.301 57.895 0.00 0.00 0.00 2.69
927 989 1.201181 CCTCGCTAATCGCTGCTATCT 59.799 52.381 0.00 0.00 38.27 1.98
1422 1485 6.587608 GCAAATTACAGCTGCTTTCAATAGTT 59.412 34.615 15.27 0.00 33.20 2.24
1434 1497 5.243954 GCTTTCAATAGTTTGTCCCTCCTTT 59.756 40.000 0.00 0.00 34.32 3.11
1770 1856 0.032017 CCAGTAGAGGCACCTACCCT 60.032 60.000 11.74 0.00 39.77 4.34
2256 2349 9.926158 TTGATGTGTTGATATTAACATGCTTTT 57.074 25.926 15.28 0.00 42.02 2.27
2368 2461 2.649331 ACTGATACGACCAAAGGACG 57.351 50.000 6.38 6.38 45.28 4.79
2386 2479 3.501062 GGACGGGTTTCTTTTCAAGTAGG 59.499 47.826 0.00 0.00 0.00 3.18
2469 2562 3.741388 GCCTTAACATCGTGCAGGAGTAT 60.741 47.826 15.18 5.67 0.00 2.12
2613 2710 4.621991 CAGATATCGTCGATTTGGACCTT 58.378 43.478 13.91 0.00 33.30 3.50
2630 2727 6.133356 TGGACCTTTGAACCTTTGTTTATCT 58.867 36.000 0.00 0.00 33.97 1.98
2716 2813 6.817641 TCACAATTTTGATGTTTTGCTCTGTT 59.182 30.769 0.00 0.00 0.00 3.16
2725 2822 0.102844 TTTGCTCTGTTGCTGTTGCC 59.897 50.000 0.00 0.00 38.71 4.52
2763 2860 6.494893 TCATTGTGTTTGTGCCTATTACTC 57.505 37.500 0.00 0.00 0.00 2.59
2764 2861 5.414454 TCATTGTGTTTGTGCCTATTACTCC 59.586 40.000 0.00 0.00 0.00 3.85
2765 2862 3.681593 TGTGTTTGTGCCTATTACTCCC 58.318 45.455 0.00 0.00 0.00 4.30
2766 2863 3.329520 TGTGTTTGTGCCTATTACTCCCT 59.670 43.478 0.00 0.00 0.00 4.20
2767 2864 3.939592 GTGTTTGTGCCTATTACTCCCTC 59.060 47.826 0.00 0.00 0.00 4.30
2768 2865 3.054655 TGTTTGTGCCTATTACTCCCTCC 60.055 47.826 0.00 0.00 0.00 4.30
2769 2866 1.410004 TGTGCCTATTACTCCCTCCG 58.590 55.000 0.00 0.00 0.00 4.63
2770 2867 1.342674 TGTGCCTATTACTCCCTCCGT 60.343 52.381 0.00 0.00 0.00 4.69
2771 2868 1.340568 GTGCCTATTACTCCCTCCGTC 59.659 57.143 0.00 0.00 0.00 4.79
2772 2869 0.967662 GCCTATTACTCCCTCCGTCC 59.032 60.000 0.00 0.00 0.00 4.79
2773 2870 1.630223 CCTATTACTCCCTCCGTCCC 58.370 60.000 0.00 0.00 0.00 4.46
2774 2871 1.133262 CCTATTACTCCCTCCGTCCCA 60.133 57.143 0.00 0.00 0.00 4.37
2775 2872 2.674420 CTATTACTCCCTCCGTCCCAA 58.326 52.381 0.00 0.00 0.00 4.12
2776 2873 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2777 2874 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
2778 2875 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2779 2876 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2780 2877 1.271926 ACTCCCTCCGTCCCAAAATTG 60.272 52.381 0.00 0.00 0.00 2.32
2781 2878 0.774908 TCCCTCCGTCCCAAAATTGT 59.225 50.000 0.00 0.00 0.00 2.71
2782 2879 1.173913 CCCTCCGTCCCAAAATTGTC 58.826 55.000 0.00 0.00 0.00 3.18
2783 2880 1.271926 CCCTCCGTCCCAAAATTGTCT 60.272 52.381 0.00 0.00 0.00 3.41
2784 2881 2.514803 CCTCCGTCCCAAAATTGTCTT 58.485 47.619 0.00 0.00 0.00 3.01
2785 2882 3.560453 CCCTCCGTCCCAAAATTGTCTTA 60.560 47.826 0.00 0.00 0.00 2.10
2786 2883 3.689649 CCTCCGTCCCAAAATTGTCTTAG 59.310 47.826 0.00 0.00 0.00 2.18
2787 2884 4.564821 CCTCCGTCCCAAAATTGTCTTAGA 60.565 45.833 0.00 0.00 0.00 2.10
2788 2885 5.174037 TCCGTCCCAAAATTGTCTTAGAT 57.826 39.130 0.00 0.00 0.00 1.98
2789 2886 5.566469 TCCGTCCCAAAATTGTCTTAGATT 58.434 37.500 0.00 0.00 0.00 2.40
2790 2887 6.713276 TCCGTCCCAAAATTGTCTTAGATTA 58.287 36.000 0.00 0.00 0.00 1.75
2791 2888 6.821665 TCCGTCCCAAAATTGTCTTAGATTAG 59.178 38.462 0.00 0.00 0.00 1.73
2792 2889 6.598064 CCGTCCCAAAATTGTCTTAGATTAGT 59.402 38.462 0.00 0.00 0.00 2.24
2793 2890 7.201617 CCGTCCCAAAATTGTCTTAGATTAGTC 60.202 40.741 0.00 0.00 0.00 2.59
2794 2891 7.549488 CGTCCCAAAATTGTCTTAGATTAGTCT 59.451 37.037 0.00 0.00 38.52 3.24
2795 2892 9.886132 GTCCCAAAATTGTCTTAGATTAGTCTA 57.114 33.333 0.00 0.00 35.87 2.59
2805 2902 9.438228 TGTCTTAGATTAGTCTAGATACCGATG 57.562 37.037 0.00 0.00 38.17 3.84
2806 2903 9.439500 GTCTTAGATTAGTCTAGATACCGATGT 57.561 37.037 0.00 0.00 38.17 3.06
2824 2921 8.792831 ACCGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
2825 2922 8.623903 ACCGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
2826 2923 8.899776 CCGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
2827 2924 9.661187 CGATGTATCTAATACTAAAACGTGACT 57.339 33.333 0.00 0.00 36.70 3.41
2837 2934 6.206600 ACTAAAACGTGACTTGTACATTCG 57.793 37.500 0.00 0.55 0.00 3.34
2838 2935 5.750067 ACTAAAACGTGACTTGTACATTCGT 59.250 36.000 0.00 1.18 0.00 3.85
2839 2936 6.917477 ACTAAAACGTGACTTGTACATTCGTA 59.083 34.615 0.00 0.00 0.00 3.43
2840 2937 6.774354 AAAACGTGACTTGTACATTCGTAT 57.226 33.333 0.00 0.00 0.00 3.06
2841 2938 6.774354 AAACGTGACTTGTACATTCGTATT 57.226 33.333 0.00 0.26 0.00 1.89
2842 2939 6.774354 AACGTGACTTGTACATTCGTATTT 57.226 33.333 0.00 0.00 0.00 1.40
2843 2940 7.872163 AACGTGACTTGTACATTCGTATTTA 57.128 32.000 0.00 0.00 0.00 1.40
2844 2941 7.502177 ACGTGACTTGTACATTCGTATTTAG 57.498 36.000 0.00 0.00 0.00 1.85
2845 2942 7.307694 ACGTGACTTGTACATTCGTATTTAGA 58.692 34.615 0.00 0.00 0.00 2.10
2846 2943 7.272084 ACGTGACTTGTACATTCGTATTTAGAC 59.728 37.037 0.00 0.00 0.00 2.59
2847 2944 7.271868 CGTGACTTGTACATTCGTATTTAGACA 59.728 37.037 0.00 0.00 0.00 3.41
2848 2945 8.918658 GTGACTTGTACATTCGTATTTAGACAA 58.081 33.333 0.00 0.00 0.00 3.18
2849 2946 9.478768 TGACTTGTACATTCGTATTTAGACAAA 57.521 29.630 0.00 0.00 0.00 2.83
2867 2964 7.145932 AGACAAATCTAAGACGAATTTTGGG 57.854 36.000 0.00 0.00 31.46 4.12
2868 2965 6.940298 AGACAAATCTAAGACGAATTTTGGGA 59.060 34.615 0.00 0.00 31.46 4.37
2869 2966 6.909909 ACAAATCTAAGACGAATTTTGGGAC 58.090 36.000 0.00 0.00 0.00 4.46
2870 2967 6.488683 ACAAATCTAAGACGAATTTTGGGACA 59.511 34.615 0.00 0.00 0.00 4.02
2871 2968 6.743575 AATCTAAGACGAATTTTGGGACAG 57.256 37.500 0.00 0.00 42.39 3.51
2872 2969 5.477607 TCTAAGACGAATTTTGGGACAGA 57.522 39.130 0.00 0.00 42.39 3.41
2873 2970 5.479306 TCTAAGACGAATTTTGGGACAGAG 58.521 41.667 0.00 0.00 42.39 3.35
2874 2971 3.059352 AGACGAATTTTGGGACAGAGG 57.941 47.619 0.00 0.00 42.39 3.69
2875 2972 2.084546 GACGAATTTTGGGACAGAGGG 58.915 52.381 0.00 0.00 42.39 4.30
2876 2973 1.702957 ACGAATTTTGGGACAGAGGGA 59.297 47.619 0.00 0.00 42.39 4.20
2877 2974 2.290323 ACGAATTTTGGGACAGAGGGAG 60.290 50.000 0.00 0.00 42.39 4.30
2878 2975 2.290323 CGAATTTTGGGACAGAGGGAGT 60.290 50.000 0.00 0.00 42.39 3.85
2879 2976 3.055385 CGAATTTTGGGACAGAGGGAGTA 60.055 47.826 0.00 0.00 42.39 2.59
2880 2977 4.262617 GAATTTTGGGACAGAGGGAGTAC 58.737 47.826 0.00 0.00 42.39 2.73
2881 2978 2.715763 TTTGGGACAGAGGGAGTACT 57.284 50.000 0.00 0.00 42.39 2.73
2892 2989 7.362802 ACAGAGGGAGTACTTATATTTGGTC 57.637 40.000 0.00 0.00 0.00 4.02
2897 2994 6.619852 AGGGAGTACTTATATTTGGTCATGGT 59.380 38.462 0.00 0.00 0.00 3.55
2905 3003 1.921982 TTTGGTCATGGTGGTGATGG 58.078 50.000 0.00 0.00 0.00 3.51
2911 3009 4.415179 TGGTCATGGTGGTGATGGTATAAT 59.585 41.667 0.00 0.00 0.00 1.28
2957 3055 0.321564 TGTTTGAGCCGATCCCACAG 60.322 55.000 0.00 0.00 0.00 3.66
3172 3277 7.011482 GCTATGAATTTGTACACGAGAATCCTT 59.989 37.037 0.00 0.00 0.00 3.36
3211 3317 8.742554 ATTTGTACAAACTATAAAGTGCTTGC 57.257 30.769 22.78 0.00 35.62 4.01
3212 3318 6.869315 TGTACAAACTATAAAGTGCTTGCA 57.131 33.333 0.00 0.00 35.62 4.08
3213 3319 7.447374 TGTACAAACTATAAAGTGCTTGCAT 57.553 32.000 0.00 0.00 35.62 3.96
3214 3320 8.554835 TGTACAAACTATAAAGTGCTTGCATA 57.445 30.769 0.00 0.00 35.62 3.14
3215 3321 9.004717 TGTACAAACTATAAAGTGCTTGCATAA 57.995 29.630 0.00 0.00 35.62 1.90
3226 3332 8.606040 AAAGTGCTTGCATAATAAAATGTTGT 57.394 26.923 0.00 0.00 0.00 3.32
3227 3333 9.703892 AAAGTGCTTGCATAATAAAATGTTGTA 57.296 25.926 0.00 0.00 0.00 2.41
3228 3334 9.703892 AAGTGCTTGCATAATAAAATGTTGTAA 57.296 25.926 0.00 0.00 0.00 2.41
3229 3335 9.703892 AGTGCTTGCATAATAAAATGTTGTAAA 57.296 25.926 0.00 0.00 0.00 2.01
3243 3349 8.947304 AAATGTTGTAAAAACACAAAAGCAAG 57.053 26.923 0.00 0.00 39.98 4.01
3244 3350 7.897575 ATGTTGTAAAAACACAAAAGCAAGA 57.102 28.000 0.00 0.00 39.98 3.02
3245 3351 7.715265 TGTTGTAAAAACACAAAAGCAAGAA 57.285 28.000 0.00 0.00 39.98 2.52
3246 3352 7.568433 TGTTGTAAAAACACAAAAGCAAGAAC 58.432 30.769 0.00 0.00 39.98 3.01
3247 3353 7.439655 TGTTGTAAAAACACAAAAGCAAGAACT 59.560 29.630 0.00 0.00 39.98 3.01
3248 3354 8.917655 GTTGTAAAAACACAAAAGCAAGAACTA 58.082 29.630 0.00 0.00 39.98 2.24
3249 3355 9.646427 TTGTAAAAACACAAAAGCAAGAACTAT 57.354 25.926 0.00 0.00 35.53 2.12
3250 3356 9.081997 TGTAAAAACACAAAAGCAAGAACTATG 57.918 29.630 0.00 0.00 0.00 2.23
3251 3357 7.538303 AAAAACACAAAAGCAAGAACTATGG 57.462 32.000 0.00 0.00 0.00 2.74
3252 3358 6.463995 AAACACAAAAGCAAGAACTATGGA 57.536 33.333 0.00 0.00 0.00 3.41
3253 3359 6.655078 AACACAAAAGCAAGAACTATGGAT 57.345 33.333 0.00 0.00 0.00 3.41
3254 3360 7.759489 AACACAAAAGCAAGAACTATGGATA 57.241 32.000 0.00 0.00 0.00 2.59
3255 3361 7.759489 ACACAAAAGCAAGAACTATGGATAA 57.241 32.000 0.00 0.00 0.00 1.75
3256 3362 8.177119 ACACAAAAGCAAGAACTATGGATAAA 57.823 30.769 0.00 0.00 0.00 1.40
3257 3363 8.806146 ACACAAAAGCAAGAACTATGGATAAAT 58.194 29.630 0.00 0.00 0.00 1.40
3258 3364 9.643693 CACAAAAGCAAGAACTATGGATAAATT 57.356 29.630 0.00 0.00 0.00 1.82
3264 3370 9.461312 AGCAAGAACTATGGATAAATTTGTACA 57.539 29.630 1.94 1.94 0.00 2.90
3311 3417 2.649331 CGGGTACGTCTTCATGTTCT 57.351 50.000 0.00 0.00 34.81 3.01
3312 3418 3.770263 CGGGTACGTCTTCATGTTCTA 57.230 47.619 0.00 0.00 34.81 2.10
3313 3419 4.303086 CGGGTACGTCTTCATGTTCTAT 57.697 45.455 0.00 0.00 34.81 1.98
3314 3420 4.042398 CGGGTACGTCTTCATGTTCTATG 58.958 47.826 0.00 0.00 34.81 2.23
3315 3421 4.439700 CGGGTACGTCTTCATGTTCTATGT 60.440 45.833 0.00 0.00 34.81 2.29
3316 3422 4.804139 GGGTACGTCTTCATGTTCTATGTG 59.196 45.833 0.00 0.00 0.00 3.21
3317 3423 4.267928 GGTACGTCTTCATGTTCTATGTGC 59.732 45.833 0.00 0.00 0.00 4.57
3318 3424 4.193826 ACGTCTTCATGTTCTATGTGCT 57.806 40.909 0.00 0.00 0.00 4.40
3319 3425 4.569943 ACGTCTTCATGTTCTATGTGCTT 58.430 39.130 0.00 0.00 0.00 3.91
3320 3426 4.389992 ACGTCTTCATGTTCTATGTGCTTG 59.610 41.667 0.00 0.00 0.00 4.01
3321 3427 4.656041 GTCTTCATGTTCTATGTGCTTGC 58.344 43.478 0.00 0.00 0.00 4.01
3322 3428 4.154737 GTCTTCATGTTCTATGTGCTTGCA 59.845 41.667 0.00 0.00 0.00 4.08
3323 3429 4.945543 TCTTCATGTTCTATGTGCTTGCAT 59.054 37.500 0.00 0.00 0.00 3.96
3324 3430 6.037500 GTCTTCATGTTCTATGTGCTTGCATA 59.962 38.462 0.00 0.00 0.00 3.14
3325 3431 6.598850 TCTTCATGTTCTATGTGCTTGCATAA 59.401 34.615 0.00 0.00 31.76 1.90
3326 3432 6.756299 TCATGTTCTATGTGCTTGCATAAA 57.244 33.333 0.00 0.00 31.76 1.40
3327 3433 6.788243 TCATGTTCTATGTGCTTGCATAAAG 58.212 36.000 0.00 0.00 39.07 1.85
3328 3434 6.375174 TCATGTTCTATGTGCTTGCATAAAGT 59.625 34.615 0.00 0.00 38.25 2.66
3329 3435 6.573664 TGTTCTATGTGCTTGCATAAAGTT 57.426 33.333 0.00 0.00 38.25 2.66
3330 3436 6.980593 TGTTCTATGTGCTTGCATAAAGTTT 58.019 32.000 0.00 0.00 38.25 2.66
3331 3437 7.083858 TGTTCTATGTGCTTGCATAAAGTTTC 58.916 34.615 0.00 0.00 38.25 2.78
3332 3438 6.816134 TCTATGTGCTTGCATAAAGTTTCA 57.184 33.333 0.00 0.00 38.25 2.69
3333 3439 6.611381 TCTATGTGCTTGCATAAAGTTTCAC 58.389 36.000 0.00 0.00 38.25 3.18
3334 3440 3.626977 TGTGCTTGCATAAAGTTTCACG 58.373 40.909 0.00 0.00 38.25 4.35
3335 3441 2.979813 GTGCTTGCATAAAGTTTCACGG 59.020 45.455 0.00 0.00 38.25 4.94
3336 3442 2.881513 TGCTTGCATAAAGTTTCACGGA 59.118 40.909 0.00 0.00 38.25 4.69
3337 3443 3.316588 TGCTTGCATAAAGTTTCACGGAA 59.683 39.130 0.00 0.00 38.25 4.30
3338 3444 4.202060 TGCTTGCATAAAGTTTCACGGAAA 60.202 37.500 0.00 0.00 38.25 3.13
3339 3445 4.742659 GCTTGCATAAAGTTTCACGGAAAA 59.257 37.500 0.00 0.00 38.25 2.29
3340 3446 5.405269 GCTTGCATAAAGTTTCACGGAAAAT 59.595 36.000 0.00 0.00 38.25 1.82
3341 3447 6.073819 GCTTGCATAAAGTTTCACGGAAAATT 60.074 34.615 6.34 6.34 40.68 1.82
3342 3448 7.115663 GCTTGCATAAAGTTTCACGGAAAATTA 59.884 33.333 10.83 9.03 38.56 1.40
3343 3449 8.873215 TTGCATAAAGTTTCACGGAAAATTAA 57.127 26.923 10.83 2.10 38.56 1.40
3344 3450 8.288217 TGCATAAAGTTTCACGGAAAATTAAC 57.712 30.769 10.83 0.00 38.56 2.01
3345 3451 8.138712 TGCATAAAGTTTCACGGAAAATTAACT 58.861 29.630 10.83 0.00 38.56 2.24
3346 3452 8.974408 GCATAAAGTTTCACGGAAAATTAACTT 58.026 29.630 10.83 0.00 38.56 2.66
3355 3461 8.804688 TCACGGAAAATTAACTTTTATTGTGG 57.195 30.769 0.00 0.00 37.18 4.17
3356 3462 7.382759 TCACGGAAAATTAACTTTTATTGTGGC 59.617 33.333 0.00 0.00 37.18 5.01
3357 3463 6.647481 ACGGAAAATTAACTTTTATTGTGGCC 59.353 34.615 0.00 0.00 37.18 5.36
3358 3464 6.871492 CGGAAAATTAACTTTTATTGTGGCCT 59.129 34.615 3.32 0.00 37.18 5.19
3359 3465 7.148656 CGGAAAATTAACTTTTATTGTGGCCTG 60.149 37.037 3.32 0.00 37.18 4.85
3360 3466 7.360861 GGAAAATTAACTTTTATTGTGGCCTGC 60.361 37.037 3.32 0.00 37.18 4.85
3361 3467 2.723124 AACTTTTATTGTGGCCTGCG 57.277 45.000 3.32 0.00 0.00 5.18
3362 3468 1.616159 ACTTTTATTGTGGCCTGCGT 58.384 45.000 3.32 0.00 0.00 5.24
3363 3469 2.785562 ACTTTTATTGTGGCCTGCGTA 58.214 42.857 3.32 0.00 0.00 4.42
3364 3470 3.150767 ACTTTTATTGTGGCCTGCGTAA 58.849 40.909 3.32 0.00 0.00 3.18
3365 3471 3.570550 ACTTTTATTGTGGCCTGCGTAAA 59.429 39.130 3.32 2.16 0.00 2.01
3366 3472 4.038162 ACTTTTATTGTGGCCTGCGTAAAA 59.962 37.500 3.32 9.86 0.00 1.52
3367 3473 4.585955 TTTATTGTGGCCTGCGTAAAAA 57.414 36.364 3.32 0.00 0.00 1.94
3404 3510 9.601971 TTATGTCGTGAAACACTATTTAAAAGC 57.398 29.630 0.00 0.00 35.74 3.51
3405 3511 7.017498 TGTCGTGAAACACTATTTAAAAGCA 57.983 32.000 0.00 0.00 35.74 3.91
3406 3512 6.908284 TGTCGTGAAACACTATTTAAAAGCAC 59.092 34.615 0.00 0.00 35.74 4.40
3407 3513 7.130269 GTCGTGAAACACTATTTAAAAGCACT 58.870 34.615 0.00 0.00 35.74 4.40
3408 3514 7.111593 GTCGTGAAACACTATTTAAAAGCACTG 59.888 37.037 0.00 0.00 35.74 3.66
3409 3515 7.011576 TCGTGAAACACTATTTAAAAGCACTGA 59.988 33.333 0.00 0.00 35.74 3.41
3410 3516 7.642194 CGTGAAACACTATTTAAAAGCACTGAA 59.358 33.333 0.00 0.00 35.74 3.02
3411 3517 9.296400 GTGAAACACTATTTAAAAGCACTGAAA 57.704 29.630 0.00 0.00 36.32 2.69
3416 3522 9.816354 ACACTATTTAAAAGCACTGAAATTTGT 57.184 25.926 0.00 0.00 0.00 2.83
3421 3527 9.822185 ATTTAAAAGCACTGAAATTTGTCTTCT 57.178 25.926 0.00 0.00 0.00 2.85
3422 3528 9.651913 TTTAAAAGCACTGAAATTTGTCTTCTT 57.348 25.926 0.00 0.00 0.00 2.52
3423 3529 9.651913 TTAAAAGCACTGAAATTTGTCTTCTTT 57.348 25.926 0.00 0.00 0.00 2.52
3424 3530 7.529880 AAAGCACTGAAATTTGTCTTCTTTG 57.470 32.000 0.00 0.00 0.00 2.77
3425 3531 6.212888 AGCACTGAAATTTGTCTTCTTTGT 57.787 33.333 0.00 0.00 0.00 2.83
3426 3532 6.038356 AGCACTGAAATTTGTCTTCTTTGTG 58.962 36.000 0.00 0.00 0.00 3.33
3427 3533 5.232838 GCACTGAAATTTGTCTTCTTTGTGG 59.767 40.000 0.00 0.00 0.00 4.17
3428 3534 6.563422 CACTGAAATTTGTCTTCTTTGTGGA 58.437 36.000 0.00 0.00 0.00 4.02
3429 3535 6.694411 CACTGAAATTTGTCTTCTTTGTGGAG 59.306 38.462 0.00 0.00 0.00 3.86
3430 3536 6.147864 TGAAATTTGTCTTCTTTGTGGAGG 57.852 37.500 0.00 0.00 0.00 4.30
3431 3537 4.590850 AATTTGTCTTCTTTGTGGAGGC 57.409 40.909 0.00 0.00 0.00 4.70
3432 3538 2.727123 TTGTCTTCTTTGTGGAGGCA 57.273 45.000 0.00 0.00 0.00 4.75
3433 3539 2.727123 TGTCTTCTTTGTGGAGGCAA 57.273 45.000 0.00 0.00 0.00 4.52
3434 3540 3.011566 TGTCTTCTTTGTGGAGGCAAA 57.988 42.857 0.00 0.00 36.93 3.68
3435 3541 3.360867 TGTCTTCTTTGTGGAGGCAAAA 58.639 40.909 0.00 0.00 37.82 2.44
3436 3542 3.130340 TGTCTTCTTTGTGGAGGCAAAAC 59.870 43.478 0.00 0.00 37.82 2.43
3437 3543 3.130340 GTCTTCTTTGTGGAGGCAAAACA 59.870 43.478 0.00 0.00 37.82 2.83
3438 3544 3.766591 TCTTCTTTGTGGAGGCAAAACAA 59.233 39.130 0.00 0.00 37.82 2.83
3439 3545 4.221703 TCTTCTTTGTGGAGGCAAAACAAA 59.778 37.500 10.04 10.04 40.49 2.83
3442 3548 3.518634 TTGTGGAGGCAAAACAAAGAC 57.481 42.857 0.00 0.00 31.16 3.01
3443 3549 2.451490 TGTGGAGGCAAAACAAAGACA 58.549 42.857 0.00 0.00 0.00 3.41
3444 3550 3.030291 TGTGGAGGCAAAACAAAGACAT 58.970 40.909 0.00 0.00 0.00 3.06
3445 3551 3.450457 TGTGGAGGCAAAACAAAGACATT 59.550 39.130 0.00 0.00 0.00 2.71
3446 3552 4.081198 TGTGGAGGCAAAACAAAGACATTT 60.081 37.500 0.00 0.00 0.00 2.32
3447 3553 4.875536 GTGGAGGCAAAACAAAGACATTTT 59.124 37.500 0.00 0.00 0.00 1.82
3448 3554 5.353956 GTGGAGGCAAAACAAAGACATTTTT 59.646 36.000 0.00 0.00 0.00 1.94
3468 3574 4.481930 TTTCATAGAACTTTGTGCCACG 57.518 40.909 0.00 0.00 0.00 4.94
3469 3575 3.120321 TCATAGAACTTTGTGCCACGT 57.880 42.857 0.00 0.00 0.00 4.49
3470 3576 4.260139 TCATAGAACTTTGTGCCACGTA 57.740 40.909 0.00 0.00 0.00 3.57
3471 3577 3.991773 TCATAGAACTTTGTGCCACGTAC 59.008 43.478 0.00 0.00 0.00 3.67
3472 3578 2.319136 AGAACTTTGTGCCACGTACA 57.681 45.000 0.00 0.00 0.00 2.90
3473 3579 1.937899 AGAACTTTGTGCCACGTACAC 59.062 47.619 12.66 12.66 38.55 2.90
3474 3580 1.666700 GAACTTTGTGCCACGTACACA 59.333 47.619 17.03 17.03 45.90 3.72
3475 3581 1.961793 ACTTTGTGCCACGTACACAT 58.038 45.000 20.41 6.95 46.72 3.21
3476 3582 3.114668 ACTTTGTGCCACGTACACATA 57.885 42.857 20.41 15.73 46.72 2.29
3477 3583 3.670625 ACTTTGTGCCACGTACACATAT 58.329 40.909 20.41 9.32 46.72 1.78
3478 3584 4.069304 ACTTTGTGCCACGTACACATATT 58.931 39.130 20.41 10.16 46.72 1.28
3479 3585 4.517453 ACTTTGTGCCACGTACACATATTT 59.483 37.500 20.41 6.95 46.72 1.40
3480 3586 4.411993 TTGTGCCACGTACACATATTTG 57.588 40.909 20.41 0.00 46.72 2.32
3481 3587 2.160615 TGTGCCACGTACACATATTTGC 59.839 45.455 17.03 0.00 42.88 3.68
3482 3588 1.395262 TGCCACGTACACATATTTGCG 59.605 47.619 0.00 0.00 0.00 4.85
3483 3589 1.661617 GCCACGTACACATATTTGCGA 59.338 47.619 0.00 0.00 0.00 5.10
3484 3590 2.094575 GCCACGTACACATATTTGCGAA 59.905 45.455 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 110 2.167219 CGTCGCGGAGGTAGTCGTA 61.167 63.158 6.13 0.00 0.00 3.43
301 311 2.572647 CGCGTGTAGTCGTCGTCC 60.573 66.667 0.00 0.00 0.00 4.79
388 435 0.684805 ACGCTACTAGGCTGCTCCTT 60.685 55.000 0.00 0.00 44.75 3.36
441 490 0.727122 AACTTCGGCGAGTTCGTACG 60.727 55.000 10.46 9.53 42.22 3.67
470 520 4.250431 AGCACAAACACGGCGCAC 62.250 61.111 10.83 0.00 0.00 5.34
571 623 2.975266 TGCGCTAAAAATCGTCCCTTA 58.025 42.857 9.73 0.00 0.00 2.69
591 643 0.557729 CCAACCATTGGCCCCTAGAT 59.442 55.000 0.00 0.00 45.17 1.98
618 672 2.780595 GCCTTCAGCGCCATCTAAA 58.219 52.632 2.29 0.00 0.00 1.85
628 682 1.153349 CTTACTCCCCGCCTTCAGC 60.153 63.158 0.00 0.00 38.52 4.26
629 683 0.461961 CTCTTACTCCCCGCCTTCAG 59.538 60.000 0.00 0.00 0.00 3.02
630 684 1.614241 GCTCTTACTCCCCGCCTTCA 61.614 60.000 0.00 0.00 0.00 3.02
631 685 1.144276 GCTCTTACTCCCCGCCTTC 59.856 63.158 0.00 0.00 0.00 3.46
632 686 1.306226 AGCTCTTACTCCCCGCCTT 60.306 57.895 0.00 0.00 0.00 4.35
633 687 1.758906 GAGCTCTTACTCCCCGCCT 60.759 63.158 6.43 0.00 0.00 5.52
634 688 2.816012 GAGCTCTTACTCCCCGCC 59.184 66.667 6.43 0.00 0.00 6.13
640 694 1.226717 CCGCACGGAGCTCTTACTC 60.227 63.158 14.64 0.00 42.61 2.59
641 695 1.533469 AACCGCACGGAGCTCTTACT 61.533 55.000 17.40 0.00 42.61 2.24
642 696 0.669625 AAACCGCACGGAGCTCTTAC 60.670 55.000 17.40 0.00 42.61 2.34
643 697 0.034337 AAAACCGCACGGAGCTCTTA 59.966 50.000 17.40 0.00 42.61 2.10
644 698 1.227853 AAAACCGCACGGAGCTCTT 60.228 52.632 17.40 0.00 42.61 2.85
645 699 1.961277 CAAAACCGCACGGAGCTCT 60.961 57.895 17.40 0.00 42.61 4.09
646 700 0.947180 TACAAAACCGCACGGAGCTC 60.947 55.000 17.40 4.71 42.61 4.09
647 701 0.321298 ATACAAAACCGCACGGAGCT 60.321 50.000 17.40 0.00 42.61 4.09
648 702 0.096454 GATACAAAACCGCACGGAGC 59.904 55.000 17.40 0.00 38.96 4.70
649 703 1.659098 GAGATACAAAACCGCACGGAG 59.341 52.381 17.40 5.17 38.96 4.63
650 704 1.673626 GGAGATACAAAACCGCACGGA 60.674 52.381 17.40 0.00 38.96 4.69
651 705 0.725117 GGAGATACAAAACCGCACGG 59.275 55.000 7.71 7.71 42.03 4.94
652 706 0.725117 GGGAGATACAAAACCGCACG 59.275 55.000 0.00 0.00 0.00 5.34
653 707 1.092348 GGGGAGATACAAAACCGCAC 58.908 55.000 0.00 0.00 35.81 5.34
654 708 0.391927 CGGGGAGATACAAAACCGCA 60.392 55.000 0.00 0.00 34.54 5.69
655 709 1.093496 CCGGGGAGATACAAAACCGC 61.093 60.000 0.00 0.00 39.96 5.68
656 710 0.251073 ACCGGGGAGATACAAAACCG 59.749 55.000 6.32 0.00 40.89 4.44
657 711 1.741394 CGACCGGGGAGATACAAAACC 60.741 57.143 6.32 0.00 0.00 3.27
757 811 9.314321 GTGTAAGTTATATAGCTCTTTGCAGAA 57.686 33.333 0.00 0.00 45.94 3.02
761 815 7.695869 ACGTGTAAGTTATATAGCTCTTTGC 57.304 36.000 0.00 0.00 43.29 3.68
801 855 1.003718 GCGAGTAGGGCAGGTGTTT 60.004 57.895 0.00 0.00 0.00 2.83
927 989 1.066908 CCTGGAGCAACAAAGCGAAAA 59.933 47.619 0.00 0.00 40.15 2.29
1376 1439 4.393062 TGCAAGCAGAGTAAAACAGCTATC 59.607 41.667 0.00 0.00 34.66 2.08
1422 1485 6.133356 AGTGTAAAATCAAAAGGAGGGACAA 58.867 36.000 0.00 0.00 0.00 3.18
1434 1497 8.836413 AGAGATCGTTCAAAAGTGTAAAATCAA 58.164 29.630 0.00 0.00 0.00 2.57
1553 1634 0.808755 GTTTGGGCAATCAGGTACCG 59.191 55.000 6.18 1.56 0.00 4.02
2386 2479 2.607635 TCAGTCAAACGTCAAGTTCTGC 59.392 45.455 0.00 0.00 43.37 4.26
2613 2710 4.261994 GCTGCCAGATAAACAAAGGTTCAA 60.262 41.667 0.00 0.00 35.82 2.69
2725 2822 5.775686 ACACAATGATGTCAAATGGAACAG 58.224 37.500 0.00 0.00 39.27 3.16
2763 2860 1.173913 GACAATTTTGGGACGGAGGG 58.826 55.000 0.00 0.00 0.00 4.30
2764 2861 2.200373 AGACAATTTTGGGACGGAGG 57.800 50.000 0.00 0.00 0.00 4.30
2765 2862 4.575885 TCTAAGACAATTTTGGGACGGAG 58.424 43.478 0.00 0.00 0.00 4.63
2766 2863 4.627284 TCTAAGACAATTTTGGGACGGA 57.373 40.909 0.00 0.00 0.00 4.69
2767 2864 5.897377 AATCTAAGACAATTTTGGGACGG 57.103 39.130 0.00 0.00 0.00 4.79
2768 2865 7.549488 AGACTAATCTAAGACAATTTTGGGACG 59.451 37.037 0.00 0.00 31.46 4.79
2769 2866 8.794335 AGACTAATCTAAGACAATTTTGGGAC 57.206 34.615 0.00 0.00 31.46 4.46
2779 2876 9.438228 CATCGGTATCTAGACTAATCTAAGACA 57.562 37.037 0.00 0.00 36.98 3.41
2780 2877 9.439500 ACATCGGTATCTAGACTAATCTAAGAC 57.561 37.037 0.00 0.00 36.98 3.01
2798 2895 9.882996 CACGTTTTAGTATTAGATACATCGGTA 57.117 33.333 0.00 0.00 38.21 4.02
2799 2896 8.623903 TCACGTTTTAGTATTAGATACATCGGT 58.376 33.333 0.00 0.00 38.21 4.69
2800 2897 8.899776 GTCACGTTTTAGTATTAGATACATCGG 58.100 37.037 0.00 0.00 38.21 4.18
2801 2898 9.661187 AGTCACGTTTTAGTATTAGATACATCG 57.339 33.333 0.00 0.00 38.21 3.84
2811 2908 8.430063 CGAATGTACAAGTCACGTTTTAGTATT 58.570 33.333 0.00 0.00 0.00 1.89
2812 2909 7.596248 ACGAATGTACAAGTCACGTTTTAGTAT 59.404 33.333 0.00 0.00 0.00 2.12
2813 2910 6.917477 ACGAATGTACAAGTCACGTTTTAGTA 59.083 34.615 0.00 0.00 0.00 1.82
2814 2911 5.750067 ACGAATGTACAAGTCACGTTTTAGT 59.250 36.000 0.00 0.00 0.00 2.24
2815 2912 6.206600 ACGAATGTACAAGTCACGTTTTAG 57.793 37.500 0.00 0.00 0.00 1.85
2816 2913 7.872163 ATACGAATGTACAAGTCACGTTTTA 57.128 32.000 16.32 5.06 32.26 1.52
2817 2914 6.774354 ATACGAATGTACAAGTCACGTTTT 57.226 33.333 16.32 0.00 32.26 2.43
2818 2915 6.774354 AATACGAATGTACAAGTCACGTTT 57.226 33.333 16.32 9.54 32.26 3.60
2819 2916 6.774354 AAATACGAATGTACAAGTCACGTT 57.226 33.333 16.32 0.00 32.26 3.99
2820 2917 7.272084 GTCTAAATACGAATGTACAAGTCACGT 59.728 37.037 0.00 10.02 32.26 4.49
2821 2918 7.271868 TGTCTAAATACGAATGTACAAGTCACG 59.728 37.037 0.00 4.46 32.26 4.35
2822 2919 8.456904 TGTCTAAATACGAATGTACAAGTCAC 57.543 34.615 0.00 0.00 32.26 3.67
2823 2920 9.478768 TTTGTCTAAATACGAATGTACAAGTCA 57.521 29.630 0.00 0.00 32.26 3.41
2834 2931 9.844790 TTCGTCTTAGATTTGTCTAAATACGAA 57.155 29.630 25.06 25.06 45.47 3.85
2841 2938 8.726988 CCCAAAATTCGTCTTAGATTTGTCTAA 58.273 33.333 5.05 0.00 0.00 2.10
2842 2939 8.098286 TCCCAAAATTCGTCTTAGATTTGTCTA 58.902 33.333 5.05 0.00 0.00 2.59
2843 2940 6.940298 TCCCAAAATTCGTCTTAGATTTGTCT 59.060 34.615 5.05 0.00 0.00 3.41
2844 2941 7.021790 GTCCCAAAATTCGTCTTAGATTTGTC 58.978 38.462 5.05 0.00 0.00 3.18
2845 2942 6.488683 TGTCCCAAAATTCGTCTTAGATTTGT 59.511 34.615 5.05 0.00 0.00 2.83
2846 2943 6.908825 TGTCCCAAAATTCGTCTTAGATTTG 58.091 36.000 0.00 0.00 0.00 2.32
2847 2944 6.940298 TCTGTCCCAAAATTCGTCTTAGATTT 59.060 34.615 0.00 0.00 0.00 2.17
2848 2945 6.472887 TCTGTCCCAAAATTCGTCTTAGATT 58.527 36.000 0.00 0.00 0.00 2.40
2849 2946 6.049955 TCTGTCCCAAAATTCGTCTTAGAT 57.950 37.500 0.00 0.00 0.00 1.98
2850 2947 5.477607 TCTGTCCCAAAATTCGTCTTAGA 57.522 39.130 0.00 0.00 0.00 2.10
2851 2948 4.631813 CCTCTGTCCCAAAATTCGTCTTAG 59.368 45.833 0.00 0.00 0.00 2.18
2852 2949 4.564821 CCCTCTGTCCCAAAATTCGTCTTA 60.565 45.833 0.00 0.00 0.00 2.10
2853 2950 3.412386 CCTCTGTCCCAAAATTCGTCTT 58.588 45.455 0.00 0.00 0.00 3.01
2854 2951 2.290323 CCCTCTGTCCCAAAATTCGTCT 60.290 50.000 0.00 0.00 0.00 4.18
2855 2952 2.084546 CCCTCTGTCCCAAAATTCGTC 58.915 52.381 0.00 0.00 0.00 4.20
2856 2953 1.702957 TCCCTCTGTCCCAAAATTCGT 59.297 47.619 0.00 0.00 0.00 3.85
2857 2954 2.290323 ACTCCCTCTGTCCCAAAATTCG 60.290 50.000 0.00 0.00 0.00 3.34
2858 2955 3.441500 ACTCCCTCTGTCCCAAAATTC 57.558 47.619 0.00 0.00 0.00 2.17
2859 2956 3.916989 AGTACTCCCTCTGTCCCAAAATT 59.083 43.478 0.00 0.00 0.00 1.82
2860 2957 3.532102 AGTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
2861 2958 2.986050 AGTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
2862 2959 2.715763 AGTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
2863 2960 2.715763 AAGTACTCCCTCTGTCCCAA 57.284 50.000 0.00 0.00 0.00 4.12
2864 2961 5.681494 ATATAAGTACTCCCTCTGTCCCA 57.319 43.478 0.00 0.00 0.00 4.37
2865 2962 6.239629 CCAAATATAAGTACTCCCTCTGTCCC 60.240 46.154 0.00 0.00 0.00 4.46
2866 2963 6.326843 ACCAAATATAAGTACTCCCTCTGTCC 59.673 42.308 0.00 0.00 0.00 4.02
2867 2964 7.069578 TGACCAAATATAAGTACTCCCTCTGTC 59.930 40.741 0.00 0.00 0.00 3.51
2868 2965 6.901300 TGACCAAATATAAGTACTCCCTCTGT 59.099 38.462 0.00 0.00 0.00 3.41
2869 2966 7.361457 TGACCAAATATAAGTACTCCCTCTG 57.639 40.000 0.00 0.00 0.00 3.35
2870 2967 7.016661 CCATGACCAAATATAAGTACTCCCTCT 59.983 40.741 0.00 0.00 0.00 3.69
2871 2968 7.162082 CCATGACCAAATATAAGTACTCCCTC 58.838 42.308 0.00 0.00 0.00 4.30
2872 2969 6.619852 ACCATGACCAAATATAAGTACTCCCT 59.380 38.462 0.00 0.00 0.00 4.20
2873 2970 6.710744 CACCATGACCAAATATAAGTACTCCC 59.289 42.308 0.00 0.00 0.00 4.30
2874 2971 6.710744 CCACCATGACCAAATATAAGTACTCC 59.289 42.308 0.00 0.00 0.00 3.85
2875 2972 7.226720 CACCACCATGACCAAATATAAGTACTC 59.773 40.741 0.00 0.00 0.00 2.59
2876 2973 7.054124 CACCACCATGACCAAATATAAGTACT 58.946 38.462 0.00 0.00 0.00 2.73
2877 2974 7.051623 TCACCACCATGACCAAATATAAGTAC 58.948 38.462 0.00 0.00 0.00 2.73
2878 2975 7.201702 TCACCACCATGACCAAATATAAGTA 57.798 36.000 0.00 0.00 0.00 2.24
2879 2976 6.073447 TCACCACCATGACCAAATATAAGT 57.927 37.500 0.00 0.00 0.00 2.24
2880 2977 6.016024 CCATCACCACCATGACCAAATATAAG 60.016 42.308 0.00 0.00 0.00 1.73
2881 2978 5.832595 CCATCACCACCATGACCAAATATAA 59.167 40.000 0.00 0.00 0.00 0.98
2892 2989 6.489700 TGCTAAATTATACCATCACCACCATG 59.510 38.462 0.00 0.00 0.00 3.66
2897 2994 8.815565 TCTTTTGCTAAATTATACCATCACCA 57.184 30.769 0.00 0.00 0.00 4.17
2905 3003 9.665264 AGCGCTATTTCTTTTGCTAAATTATAC 57.335 29.630 8.99 0.00 0.00 1.47
2911 3009 6.007936 TGAAGCGCTATTTCTTTTGCTAAA 57.992 33.333 12.05 0.00 31.41 1.85
2932 3030 2.491693 GGGATCGGCTCAAACAATTTGA 59.508 45.455 2.79 4.08 46.68 2.69
2947 3045 2.544685 GACACTGAATCTGTGGGATCG 58.455 52.381 21.31 0.00 37.57 3.69
2957 3055 6.690194 AGCATCTTAAATGGACACTGAATC 57.310 37.500 0.00 0.00 0.00 2.52
3041 3141 4.703379 TTTCAAACAATTTGGAGCCCAT 57.297 36.364 0.78 0.00 40.98 4.00
3217 3323 9.392021 CTTGCTTTTGTGTTTTTACAACATTTT 57.608 25.926 0.00 0.00 40.04 1.82
3218 3324 8.778358 TCTTGCTTTTGTGTTTTTACAACATTT 58.222 25.926 0.00 0.00 40.04 2.32
3219 3325 8.316640 TCTTGCTTTTGTGTTTTTACAACATT 57.683 26.923 0.00 0.00 40.04 2.71
3220 3326 7.897575 TCTTGCTTTTGTGTTTTTACAACAT 57.102 28.000 0.00 0.00 40.04 2.71
3221 3327 7.439655 AGTTCTTGCTTTTGTGTTTTTACAACA 59.560 29.630 0.00 0.00 40.04 3.33
3222 3328 7.792925 AGTTCTTGCTTTTGTGTTTTTACAAC 58.207 30.769 0.00 0.00 40.04 3.32
3223 3329 7.954788 AGTTCTTGCTTTTGTGTTTTTACAA 57.045 28.000 0.00 0.00 38.69 2.41
3224 3330 9.081997 CATAGTTCTTGCTTTTGTGTTTTTACA 57.918 29.630 0.00 0.00 0.00 2.41
3225 3331 8.539674 CCATAGTTCTTGCTTTTGTGTTTTTAC 58.460 33.333 0.00 0.00 0.00 2.01
3226 3332 8.470805 TCCATAGTTCTTGCTTTTGTGTTTTTA 58.529 29.630 0.00 0.00 0.00 1.52
3227 3333 7.327214 TCCATAGTTCTTGCTTTTGTGTTTTT 58.673 30.769 0.00 0.00 0.00 1.94
3228 3334 6.872920 TCCATAGTTCTTGCTTTTGTGTTTT 58.127 32.000 0.00 0.00 0.00 2.43
3229 3335 6.463995 TCCATAGTTCTTGCTTTTGTGTTT 57.536 33.333 0.00 0.00 0.00 2.83
3230 3336 6.655078 ATCCATAGTTCTTGCTTTTGTGTT 57.345 33.333 0.00 0.00 0.00 3.32
3231 3337 7.759489 TTATCCATAGTTCTTGCTTTTGTGT 57.241 32.000 0.00 0.00 0.00 3.72
3232 3338 9.643693 AATTTATCCATAGTTCTTGCTTTTGTG 57.356 29.630 0.00 0.00 0.00 3.33
3238 3344 9.461312 TGTACAAATTTATCCATAGTTCTTGCT 57.539 29.630 0.00 0.00 0.00 3.91
3292 3398 2.649331 AGAACATGAAGACGTACCCG 57.351 50.000 0.00 0.00 40.83 5.28
3293 3399 4.804139 CACATAGAACATGAAGACGTACCC 59.196 45.833 0.00 0.00 0.00 3.69
3294 3400 4.267928 GCACATAGAACATGAAGACGTACC 59.732 45.833 0.00 0.00 0.00 3.34
3295 3401 5.103000 AGCACATAGAACATGAAGACGTAC 58.897 41.667 0.00 0.00 0.00 3.67
3296 3402 5.324784 AGCACATAGAACATGAAGACGTA 57.675 39.130 0.00 0.00 0.00 3.57
3297 3403 4.193826 AGCACATAGAACATGAAGACGT 57.806 40.909 0.00 0.00 0.00 4.34
3298 3404 4.726021 GCAAGCACATAGAACATGAAGACG 60.726 45.833 0.00 0.00 0.00 4.18
3299 3405 4.154737 TGCAAGCACATAGAACATGAAGAC 59.845 41.667 0.00 0.00 0.00 3.01
3300 3406 4.325972 TGCAAGCACATAGAACATGAAGA 58.674 39.130 0.00 0.00 0.00 2.87
3301 3407 4.690184 TGCAAGCACATAGAACATGAAG 57.310 40.909 0.00 0.00 0.00 3.02
3302 3408 6.756299 TTATGCAAGCACATAGAACATGAA 57.244 33.333 0.00 0.00 34.15 2.57
3303 3409 6.375174 ACTTTATGCAAGCACATAGAACATGA 59.625 34.615 0.00 0.00 35.65 3.07
3304 3410 6.558009 ACTTTATGCAAGCACATAGAACATG 58.442 36.000 0.00 0.00 35.65 3.21
3305 3411 6.764308 ACTTTATGCAAGCACATAGAACAT 57.236 33.333 0.00 0.00 35.65 2.71
3306 3412 6.573664 AACTTTATGCAAGCACATAGAACA 57.426 33.333 0.00 0.00 35.65 3.18
3307 3413 7.061094 GTGAAACTTTATGCAAGCACATAGAAC 59.939 37.037 0.00 0.00 35.65 3.01
3308 3414 7.083858 GTGAAACTTTATGCAAGCACATAGAA 58.916 34.615 0.00 0.00 35.65 2.10
3309 3415 6.611381 GTGAAACTTTATGCAAGCACATAGA 58.389 36.000 0.00 0.00 35.65 1.98
3310 3416 5.509272 CGTGAAACTTTATGCAAGCACATAG 59.491 40.000 0.00 0.00 35.65 2.23
3311 3417 5.389778 CGTGAAACTTTATGCAAGCACATA 58.610 37.500 0.00 0.00 35.65 2.29
3312 3418 4.229096 CGTGAAACTTTATGCAAGCACAT 58.771 39.130 0.00 0.00 35.65 3.21
3313 3419 3.549827 CCGTGAAACTTTATGCAAGCACA 60.550 43.478 0.00 0.00 35.65 4.57
3314 3420 2.979813 CCGTGAAACTTTATGCAAGCAC 59.020 45.455 0.00 0.00 35.65 4.40
3315 3421 2.881513 TCCGTGAAACTTTATGCAAGCA 59.118 40.909 0.00 0.00 35.65 3.91
3316 3422 3.552604 TCCGTGAAACTTTATGCAAGC 57.447 42.857 0.00 0.00 35.65 4.01
3317 3423 7.406799 AATTTTCCGTGAAACTTTATGCAAG 57.593 32.000 0.00 0.00 38.64 4.01
3318 3424 8.756864 GTTAATTTTCCGTGAAACTTTATGCAA 58.243 29.630 0.00 0.00 30.83 4.08
3319 3425 8.138712 AGTTAATTTTCCGTGAAACTTTATGCA 58.861 29.630 0.00 0.00 30.83 3.96
3320 3426 8.515473 AGTTAATTTTCCGTGAAACTTTATGC 57.485 30.769 7.08 0.00 30.83 3.14
3329 3435 9.250624 CCACAATAAAAGTTAATTTTCCGTGAA 57.749 29.630 12.44 0.00 41.40 3.18
3330 3436 7.382759 GCCACAATAAAAGTTAATTTTCCGTGA 59.617 33.333 12.44 0.00 41.40 4.35
3331 3437 7.359681 GGCCACAATAAAAGTTAATTTTCCGTG 60.360 37.037 0.00 1.37 41.40 4.94
3332 3438 6.647481 GGCCACAATAAAAGTTAATTTTCCGT 59.353 34.615 0.00 0.00 41.40 4.69
3333 3439 6.871492 AGGCCACAATAAAAGTTAATTTTCCG 59.129 34.615 5.01 0.00 41.40 4.30
3334 3440 7.360861 GCAGGCCACAATAAAAGTTAATTTTCC 60.361 37.037 5.01 0.00 41.40 3.13
3335 3441 7.518161 GCAGGCCACAATAAAAGTTAATTTTC 58.482 34.615 5.01 0.00 41.40 2.29
3336 3442 6.147000 CGCAGGCCACAATAAAAGTTAATTTT 59.853 34.615 5.01 0.00 43.54 1.82
3337 3443 5.637387 CGCAGGCCACAATAAAAGTTAATTT 59.363 36.000 5.01 0.00 0.00 1.82
3338 3444 5.167845 CGCAGGCCACAATAAAAGTTAATT 58.832 37.500 5.01 0.00 0.00 1.40
3339 3445 4.219725 ACGCAGGCCACAATAAAAGTTAAT 59.780 37.500 5.01 0.00 0.00 1.40
3340 3446 3.570550 ACGCAGGCCACAATAAAAGTTAA 59.429 39.130 5.01 0.00 0.00 2.01
3341 3447 3.150767 ACGCAGGCCACAATAAAAGTTA 58.849 40.909 5.01 0.00 0.00 2.24
3342 3448 1.960689 ACGCAGGCCACAATAAAAGTT 59.039 42.857 5.01 0.00 0.00 2.66
3343 3449 1.616159 ACGCAGGCCACAATAAAAGT 58.384 45.000 5.01 0.00 0.00 2.66
3344 3450 3.840890 TTACGCAGGCCACAATAAAAG 57.159 42.857 5.01 0.00 0.00 2.27
3345 3451 4.585955 TTTTACGCAGGCCACAATAAAA 57.414 36.364 5.01 8.14 0.00 1.52
3346 3452 4.585955 TTTTTACGCAGGCCACAATAAA 57.414 36.364 5.01 1.64 0.00 1.40
3378 3484 9.601971 GCTTTTAAATAGTGTTTCACGACATAA 57.398 29.630 0.00 0.00 39.64 1.90
3379 3485 8.775527 TGCTTTTAAATAGTGTTTCACGACATA 58.224 29.630 0.00 0.00 39.64 2.29
3380 3486 7.589954 GTGCTTTTAAATAGTGTTTCACGACAT 59.410 33.333 0.00 0.00 39.64 3.06
3381 3487 6.908284 GTGCTTTTAAATAGTGTTTCACGACA 59.092 34.615 0.00 0.00 39.64 4.35
3382 3488 7.111593 CAGTGCTTTTAAATAGTGTTTCACGAC 59.888 37.037 0.00 0.00 39.64 4.34
3383 3489 7.011576 TCAGTGCTTTTAAATAGTGTTTCACGA 59.988 33.333 0.00 0.00 39.64 4.35
3384 3490 7.129622 TCAGTGCTTTTAAATAGTGTTTCACG 58.870 34.615 0.00 0.00 39.64 4.35
3385 3491 8.850454 TTCAGTGCTTTTAAATAGTGTTTCAC 57.150 30.769 0.00 0.00 34.10 3.18
3390 3496 9.816354 ACAAATTTCAGTGCTTTTAAATAGTGT 57.184 25.926 0.00 0.00 0.00 3.55
3395 3501 9.822185 AGAAGACAAATTTCAGTGCTTTTAAAT 57.178 25.926 0.00 0.00 0.00 1.40
3396 3502 9.651913 AAGAAGACAAATTTCAGTGCTTTTAAA 57.348 25.926 0.00 0.00 0.00 1.52
3397 3503 9.651913 AAAGAAGACAAATTTCAGTGCTTTTAA 57.348 25.926 0.00 0.00 0.00 1.52
3398 3504 9.086336 CAAAGAAGACAAATTTCAGTGCTTTTA 57.914 29.630 0.00 0.00 0.00 1.52
3399 3505 7.603784 ACAAAGAAGACAAATTTCAGTGCTTTT 59.396 29.630 0.00 0.00 0.00 2.27
3400 3506 7.063780 CACAAAGAAGACAAATTTCAGTGCTTT 59.936 33.333 0.00 0.00 0.00 3.51
3401 3507 6.532657 CACAAAGAAGACAAATTTCAGTGCTT 59.467 34.615 0.00 0.00 0.00 3.91
3402 3508 6.038356 CACAAAGAAGACAAATTTCAGTGCT 58.962 36.000 0.00 0.00 0.00 4.40
3403 3509 5.232838 CCACAAAGAAGACAAATTTCAGTGC 59.767 40.000 0.00 0.00 0.00 4.40
3404 3510 6.563422 TCCACAAAGAAGACAAATTTCAGTG 58.437 36.000 0.00 0.00 0.00 3.66
3405 3511 6.183360 CCTCCACAAAGAAGACAAATTTCAGT 60.183 38.462 0.00 0.00 0.00 3.41
3406 3512 6.211515 CCTCCACAAAGAAGACAAATTTCAG 58.788 40.000 0.00 0.00 0.00 3.02
3407 3513 5.451798 GCCTCCACAAAGAAGACAAATTTCA 60.452 40.000 0.00 0.00 0.00 2.69
3408 3514 4.984785 GCCTCCACAAAGAAGACAAATTTC 59.015 41.667 0.00 0.00 0.00 2.17
3409 3515 4.405358 TGCCTCCACAAAGAAGACAAATTT 59.595 37.500 0.00 0.00 0.00 1.82
3410 3516 3.960102 TGCCTCCACAAAGAAGACAAATT 59.040 39.130 0.00 0.00 0.00 1.82
3411 3517 3.565307 TGCCTCCACAAAGAAGACAAAT 58.435 40.909 0.00 0.00 0.00 2.32
3412 3518 3.011566 TGCCTCCACAAAGAAGACAAA 57.988 42.857 0.00 0.00 0.00 2.83
3413 3519 2.727123 TGCCTCCACAAAGAAGACAA 57.273 45.000 0.00 0.00 0.00 3.18
3414 3520 2.727123 TTGCCTCCACAAAGAAGACA 57.273 45.000 0.00 0.00 0.00 3.41
3415 3521 3.130340 TGTTTTGCCTCCACAAAGAAGAC 59.870 43.478 0.00 0.00 40.43 3.01
3416 3522 3.360867 TGTTTTGCCTCCACAAAGAAGA 58.639 40.909 0.00 0.00 40.43 2.87
3417 3523 3.799281 TGTTTTGCCTCCACAAAGAAG 57.201 42.857 0.00 0.00 40.43 2.85
3418 3524 4.543590 TTTGTTTTGCCTCCACAAAGAA 57.456 36.364 0.00 0.00 40.43 2.52
3421 3527 3.259374 TGTCTTTGTTTTGCCTCCACAAA 59.741 39.130 0.00 0.00 37.93 2.83
3422 3528 2.828520 TGTCTTTGTTTTGCCTCCACAA 59.171 40.909 0.00 0.00 0.00 3.33
3423 3529 2.451490 TGTCTTTGTTTTGCCTCCACA 58.549 42.857 0.00 0.00 0.00 4.17
3424 3530 3.733443 ATGTCTTTGTTTTGCCTCCAC 57.267 42.857 0.00 0.00 0.00 4.02
3425 3531 4.751767 AAATGTCTTTGTTTTGCCTCCA 57.248 36.364 0.00 0.00 0.00 3.86
3445 3551 5.163602 ACGTGGCACAAAGTTCTATGAAAAA 60.164 36.000 19.09 0.00 44.16 1.94
3446 3552 4.336993 ACGTGGCACAAAGTTCTATGAAAA 59.663 37.500 19.09 0.00 44.16 2.29
3447 3553 3.880490 ACGTGGCACAAAGTTCTATGAAA 59.120 39.130 19.09 0.00 44.16 2.69
3448 3554 3.472652 ACGTGGCACAAAGTTCTATGAA 58.527 40.909 19.09 0.00 44.16 2.57
3449 3555 3.120321 ACGTGGCACAAAGTTCTATGA 57.880 42.857 19.09 0.00 44.16 2.15
3450 3556 3.743911 TGTACGTGGCACAAAGTTCTATG 59.256 43.478 19.09 0.00 44.16 2.23
3451 3557 3.744426 GTGTACGTGGCACAAAGTTCTAT 59.256 43.478 19.09 0.00 44.16 1.98
3452 3558 3.125316 GTGTACGTGGCACAAAGTTCTA 58.875 45.455 19.09 0.00 44.16 2.10
3453 3559 1.937899 GTGTACGTGGCACAAAGTTCT 59.062 47.619 19.09 0.00 44.16 3.01
3454 3560 1.666700 TGTGTACGTGGCACAAAGTTC 59.333 47.619 19.09 6.16 44.16 3.01
3455 3561 1.740297 TGTGTACGTGGCACAAAGTT 58.260 45.000 19.09 0.00 44.16 2.66
3456 3562 3.462427 TGTGTACGTGGCACAAAGT 57.538 47.368 19.09 10.07 44.16 2.66
3461 3567 2.780993 GCAAATATGTGTACGTGGCAC 58.219 47.619 7.79 7.79 37.37 5.01
3462 3568 1.395262 CGCAAATATGTGTACGTGGCA 59.605 47.619 0.00 0.00 32.29 4.92
3463 3569 1.661617 TCGCAAATATGTGTACGTGGC 59.338 47.619 0.00 0.00 38.25 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.