Multiple sequence alignment - TraesCS2A01G228500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G228500 chr2A 100.000 2301 0 0 1 2301 251254160 251256460 0.000000e+00 4250.0
1 TraesCS2A01G228500 chr2A 93.715 1082 65 2 526 1605 12657025 12658105 0.000000e+00 1618.0
2 TraesCS2A01G228500 chr2A 93.187 411 21 3 1 408 12636097 12636503 4.230000e-167 597.0
3 TraesCS2A01G228500 chr2A 79.070 344 59 10 686 1026 768939306 768939639 8.270000e-55 224.0
4 TraesCS2A01G228500 chr6A 96.557 2091 67 4 1 2088 574248220 574250308 0.000000e+00 3458.0
5 TraesCS2A01G228500 chr6A 87.529 425 51 2 1665 2088 292861123 292860700 7.390000e-135 490.0
6 TraesCS2A01G228500 chr6A 82.456 171 24 3 63 227 292862648 292862478 6.630000e-31 145.0
7 TraesCS2A01G228500 chr4A 81.343 2144 269 58 1 2088 398096791 398098859 0.000000e+00 1622.0
8 TraesCS2A01G228500 chr3A 81.262 2140 276 63 1 2088 156350567 156352633 0.000000e+00 1615.0
9 TraesCS2A01G228500 chr3A 80.461 1387 190 39 5 1375 117457088 117458409 0.000000e+00 985.0
10 TraesCS2A01G228500 chr3A 85.738 610 74 8 1483 2088 117458483 117459083 1.160000e-177 632.0
11 TraesCS2A01G228500 chr7A 82.902 889 112 17 1211 2091 49576705 49575849 0.000000e+00 763.0
12 TraesCS2A01G228500 chr7A 84.817 382 57 1 1708 2088 715059741 715059360 1.290000e-102 383.0
13 TraesCS2A01G228500 chr7A 95.833 216 6 2 2089 2301 275341127 275340912 1.690000e-91 346.0
14 TraesCS2A01G228500 chr7A 86.747 166 19 3 63 227 648204281 648204118 5.050000e-42 182.0
15 TraesCS2A01G228500 chrUn 82.638 887 114 14 1211 2088 38161990 38161135 0.000000e+00 749.0
16 TraesCS2A01G228500 chrUn 84.293 382 59 1 1708 2088 435670925 435671306 2.790000e-99 372.0
17 TraesCS2A01G228500 chrUn 95.814 215 7 1 2089 2301 112703996 112704210 1.690000e-91 346.0
18 TraesCS2A01G228500 chr5A 96.296 216 5 2 2089 2301 44511018 44510803 3.640000e-93 351.0
19 TraesCS2A01G228500 chr5A 95.853 217 5 2 2089 2301 369455826 369456042 4.700000e-92 348.0
20 TraesCS2A01G228500 chr5A 94.118 51 3 0 893 943 491714986 491714936 6.820000e-11 78.7
21 TraesCS2A01G228500 chr2D 96.296 216 5 2 2089 2301 392663293 392663508 3.640000e-93 351.0
22 TraesCS2A01G228500 chr2D 95.833 216 6 2 2089 2301 599365033 599364818 1.690000e-91 346.0
23 TraesCS2A01G228500 chr5D 95.833 216 6 2 2089 2301 243965838 243966053 1.690000e-91 346.0
24 TraesCS2A01G228500 chr4D 95.833 216 6 2 2089 2301 88256949 88256734 1.690000e-91 346.0
25 TraesCS2A01G228500 chr1D 95.833 216 6 2 2089 2301 427563308 427563523 1.690000e-91 346.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G228500 chr2A 251254160 251256460 2300 False 4250.0 4250 100.0000 1 2301 1 chr2A.!!$F3 2300
1 TraesCS2A01G228500 chr2A 12657025 12658105 1080 False 1618.0 1618 93.7150 526 1605 1 chr2A.!!$F2 1079
2 TraesCS2A01G228500 chr6A 574248220 574250308 2088 False 3458.0 3458 96.5570 1 2088 1 chr6A.!!$F1 2087
3 TraesCS2A01G228500 chr6A 292860700 292862648 1948 True 317.5 490 84.9925 63 2088 2 chr6A.!!$R1 2025
4 TraesCS2A01G228500 chr4A 398096791 398098859 2068 False 1622.0 1622 81.3430 1 2088 1 chr4A.!!$F1 2087
5 TraesCS2A01G228500 chr3A 156350567 156352633 2066 False 1615.0 1615 81.2620 1 2088 1 chr3A.!!$F1 2087
6 TraesCS2A01G228500 chr3A 117457088 117459083 1995 False 808.5 985 83.0995 5 2088 2 chr3A.!!$F2 2083
7 TraesCS2A01G228500 chr7A 49575849 49576705 856 True 763.0 763 82.9020 1211 2091 1 chr7A.!!$R1 880
8 TraesCS2A01G228500 chrUn 38161135 38161990 855 True 749.0 749 82.6380 1211 2088 1 chrUn.!!$R1 877


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 763 0.401395 GTACCCATCTCCCCCATCCA 60.401 60.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2261 2439 0.108186 TGTGGGAGATGATCGTGTGC 60.108 55.0 0.0 0.0 0.0 4.57 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 0.872388 GACCGTGCAAATCGAACCTT 59.128 50.000 0.00 0.00 0.00 3.50
287 295 3.758554 ACCTGTTGTCTAAACCATCATGC 59.241 43.478 0.00 0.00 0.00 4.06
288 296 3.758023 CCTGTTGTCTAAACCATCATGCA 59.242 43.478 0.00 0.00 0.00 3.96
289 297 4.400251 CCTGTTGTCTAAACCATCATGCAT 59.600 41.667 0.00 0.00 0.00 3.96
290 298 5.105635 CCTGTTGTCTAAACCATCATGCATT 60.106 40.000 0.00 0.00 0.00 3.56
293 301 4.018490 TGTCTAAACCATCATGCATTGCT 58.982 39.130 10.49 0.00 0.00 3.91
310 359 3.980646 TGCTGCTTGTTTAACGATGTT 57.019 38.095 0.00 0.00 0.00 2.71
439 488 0.603065 CATCCCACGGATCGCAGATA 59.397 55.000 0.00 0.00 40.98 1.98
540 589 3.431486 GCTGCTGCCTTATCTTCTACAGT 60.431 47.826 3.85 0.00 0.00 3.55
565 614 1.787058 TCCTCTCGGAATCCCCAGATA 59.213 52.381 0.00 0.00 36.03 1.98
585 634 1.002868 AAATCTCCGCTGCTGCACT 60.003 52.632 16.29 0.00 39.64 4.40
689 763 0.401395 GTACCCATCTCCCCCATCCA 60.401 60.000 0.00 0.00 0.00 3.41
731 805 1.464395 TGCCCACCTACCCCTCAAA 60.464 57.895 0.00 0.00 0.00 2.69
738 812 2.924101 TACCCCTCAAACGGCCGT 60.924 61.111 28.70 28.70 0.00 5.68
912 987 0.854218 CTCACCTCTAGCCTCCCCTA 59.146 60.000 0.00 0.00 0.00 3.53
1081 1161 2.244117 CTGCTACTGGGCCATGTCGT 62.244 60.000 6.72 3.59 0.00 4.34
1140 1220 3.138625 CCCGCATCCGTCACCTAT 58.861 61.111 0.00 0.00 0.00 2.57
1174 1254 1.070786 GGCTTCTCCGTTGACCACA 59.929 57.895 0.00 0.00 0.00 4.17
1229 1309 5.189934 TCCCTTTCCTCTCTACTTTGGATTC 59.810 44.000 0.00 0.00 0.00 2.52
1258 1341 6.006449 AGGCTGTCTTATCTTTTGTCAACAT 58.994 36.000 0.00 0.00 0.00 2.71
1312 1400 7.272144 ACTTGGTGGATAAGGTTCTATCTTT 57.728 36.000 0.00 0.00 0.00 2.52
1313 1401 7.699878 ACTTGGTGGATAAGGTTCTATCTTTT 58.300 34.615 0.00 0.00 0.00 2.27
1318 1406 9.847224 GGTGGATAAGGTTCTATCTTTTATGAA 57.153 33.333 0.00 0.00 0.00 2.57
1799 1976 7.699812 GCTAAAATTTAGTGAGCTGGAATTCTG 59.300 37.037 13.56 0.18 0.00 3.02
1800 1977 7.530426 AAAATTTAGTGAGCTGGAATTCTGT 57.470 32.000 5.23 0.00 0.00 3.41
1808 1985 1.928868 CTGGAATTCTGTTTGGGCCT 58.071 50.000 4.53 0.00 0.00 5.19
1917 2095 0.706433 ACCCATGATGGCCAAGAACT 59.294 50.000 10.96 0.00 35.79 3.01
1949 2127 4.497340 CCATGACGGTTTTAAATGATCCGG 60.497 45.833 18.49 0.00 44.54 5.14
2059 2237 1.341531 GGTCGATGACGGATCCAATCT 59.658 52.381 13.41 0.00 40.21 2.40
2091 2269 7.201530 GGATTAACAGAATTCTTGTAGTGACGG 60.202 40.741 4.86 0.00 0.00 4.79
2092 2270 4.866508 ACAGAATTCTTGTAGTGACGGA 57.133 40.909 4.86 0.00 0.00 4.69
2093 2271 5.209818 ACAGAATTCTTGTAGTGACGGAA 57.790 39.130 4.86 0.00 0.00 4.30
2094 2272 4.989168 ACAGAATTCTTGTAGTGACGGAAC 59.011 41.667 4.86 0.00 0.00 3.62
2095 2273 4.988540 CAGAATTCTTGTAGTGACGGAACA 59.011 41.667 4.86 0.00 0.00 3.18
2096 2274 5.639506 CAGAATTCTTGTAGTGACGGAACAT 59.360 40.000 4.86 0.00 0.00 2.71
2097 2275 5.869888 AGAATTCTTGTAGTGACGGAACATC 59.130 40.000 0.88 0.00 0.00 3.06
2098 2276 4.594123 TTCTTGTAGTGACGGAACATCA 57.406 40.909 0.00 0.00 0.00 3.07
2099 2277 4.594123 TCTTGTAGTGACGGAACATCAA 57.406 40.909 0.00 0.00 26.50 2.57
2100 2278 4.556233 TCTTGTAGTGACGGAACATCAAG 58.444 43.478 14.46 14.46 26.50 3.02
2101 2279 4.279922 TCTTGTAGTGACGGAACATCAAGA 59.720 41.667 16.98 16.98 26.50 3.02
2102 2280 4.801330 TGTAGTGACGGAACATCAAGAT 57.199 40.909 0.00 0.00 26.50 2.40
2103 2281 4.494484 TGTAGTGACGGAACATCAAGATG 58.506 43.478 8.45 8.45 44.15 2.90
2104 2282 2.350522 AGTGACGGAACATCAAGATGC 58.649 47.619 9.85 0.00 42.39 3.91
2105 2283 2.076100 GTGACGGAACATCAAGATGCA 58.924 47.619 9.85 0.00 42.39 3.96
2106 2284 2.679837 GTGACGGAACATCAAGATGCAT 59.320 45.455 9.85 0.00 42.39 3.96
2107 2285 3.127548 GTGACGGAACATCAAGATGCATT 59.872 43.478 9.85 0.00 42.39 3.56
2108 2286 3.758023 TGACGGAACATCAAGATGCATTT 59.242 39.130 9.85 0.00 42.39 2.32
2109 2287 4.100529 GACGGAACATCAAGATGCATTTG 58.899 43.478 9.85 7.88 42.39 2.32
2110 2288 3.507233 ACGGAACATCAAGATGCATTTGT 59.493 39.130 9.85 0.00 42.39 2.83
2111 2289 4.699735 ACGGAACATCAAGATGCATTTGTA 59.300 37.500 9.85 0.00 42.39 2.41
2112 2290 5.357878 ACGGAACATCAAGATGCATTTGTAT 59.642 36.000 9.85 1.80 42.39 2.29
2113 2291 5.684184 CGGAACATCAAGATGCATTTGTATG 59.316 40.000 9.85 13.57 42.39 2.39
2114 2292 6.458615 CGGAACATCAAGATGCATTTGTATGA 60.459 38.462 22.17 15.31 42.39 2.15
2115 2293 6.916387 GGAACATCAAGATGCATTTGTATGAG 59.084 38.462 22.17 12.56 42.39 2.90
2116 2294 7.400599 AACATCAAGATGCATTTGTATGAGT 57.599 32.000 22.17 12.92 42.39 3.41
2117 2295 8.510243 AACATCAAGATGCATTTGTATGAGTA 57.490 30.769 22.17 8.59 42.39 2.59
2118 2296 8.151141 ACATCAAGATGCATTTGTATGAGTAG 57.849 34.615 22.17 12.72 42.39 2.57
2119 2297 7.772292 ACATCAAGATGCATTTGTATGAGTAGT 59.228 33.333 22.17 13.08 42.39 2.73
2120 2298 8.618677 CATCAAGATGCATTTGTATGAGTAGTT 58.381 33.333 0.00 0.00 33.37 2.24
2121 2299 8.565896 TCAAGATGCATTTGTATGAGTAGTTT 57.434 30.769 0.00 0.00 33.37 2.66
2122 2300 9.665719 TCAAGATGCATTTGTATGAGTAGTTTA 57.334 29.630 0.00 0.00 33.37 2.01
2128 2306 9.448438 TGCATTTGTATGAGTAGTTTATCTTGT 57.552 29.630 0.00 0.00 33.37 3.16
2129 2307 9.708222 GCATTTGTATGAGTAGTTTATCTTGTG 57.292 33.333 0.00 0.00 33.37 3.33
2131 2309 8.786826 TTTGTATGAGTAGTTTATCTTGTGGG 57.213 34.615 0.00 0.00 0.00 4.61
2132 2310 6.884832 TGTATGAGTAGTTTATCTTGTGGGG 58.115 40.000 0.00 0.00 0.00 4.96
2133 2311 6.670464 TGTATGAGTAGTTTATCTTGTGGGGA 59.330 38.462 0.00 0.00 0.00 4.81
2134 2312 6.636454 ATGAGTAGTTTATCTTGTGGGGAA 57.364 37.500 0.00 0.00 0.00 3.97
2135 2313 6.442541 TGAGTAGTTTATCTTGTGGGGAAA 57.557 37.500 0.00 0.00 0.00 3.13
2136 2314 6.843752 TGAGTAGTTTATCTTGTGGGGAAAA 58.156 36.000 0.00 0.00 0.00 2.29
2137 2315 6.940298 TGAGTAGTTTATCTTGTGGGGAAAAG 59.060 38.462 0.00 0.00 0.00 2.27
2138 2316 6.246163 AGTAGTTTATCTTGTGGGGAAAAGG 58.754 40.000 0.00 0.00 0.00 3.11
2139 2317 5.333566 AGTTTATCTTGTGGGGAAAAGGA 57.666 39.130 0.00 0.00 0.00 3.36
2140 2318 5.903923 AGTTTATCTTGTGGGGAAAAGGAT 58.096 37.500 0.00 0.00 0.00 3.24
2141 2319 5.716703 AGTTTATCTTGTGGGGAAAAGGATG 59.283 40.000 0.00 0.00 0.00 3.51
2142 2320 5.528600 TTATCTTGTGGGGAAAAGGATGA 57.471 39.130 0.00 0.00 0.00 2.92
2143 2321 3.893753 TCTTGTGGGGAAAAGGATGAA 57.106 42.857 0.00 0.00 0.00 2.57
2144 2322 3.496331 TCTTGTGGGGAAAAGGATGAAC 58.504 45.455 0.00 0.00 0.00 3.18
2145 2323 3.117322 TCTTGTGGGGAAAAGGATGAACA 60.117 43.478 0.00 0.00 0.00 3.18
2146 2324 3.320610 TGTGGGGAAAAGGATGAACAA 57.679 42.857 0.00 0.00 0.00 2.83
2147 2325 3.230134 TGTGGGGAAAAGGATGAACAAG 58.770 45.455 0.00 0.00 0.00 3.16
2148 2326 2.562738 GTGGGGAAAAGGATGAACAAGG 59.437 50.000 0.00 0.00 0.00 3.61
2149 2327 2.179427 GGGGAAAAGGATGAACAAGGG 58.821 52.381 0.00 0.00 0.00 3.95
2150 2328 2.225267 GGGGAAAAGGATGAACAAGGGA 60.225 50.000 0.00 0.00 0.00 4.20
2151 2329 3.506398 GGGAAAAGGATGAACAAGGGAA 58.494 45.455 0.00 0.00 0.00 3.97
2152 2330 3.511540 GGGAAAAGGATGAACAAGGGAAG 59.488 47.826 0.00 0.00 0.00 3.46
2153 2331 3.511540 GGAAAAGGATGAACAAGGGAAGG 59.488 47.826 0.00 0.00 0.00 3.46
2154 2332 2.222227 AAGGATGAACAAGGGAAGGC 57.778 50.000 0.00 0.00 0.00 4.35
2155 2333 0.332972 AGGATGAACAAGGGAAGGCC 59.667 55.000 0.00 0.00 0.00 5.19
2156 2334 0.332972 GGATGAACAAGGGAAGGCCT 59.667 55.000 0.00 0.00 0.00 5.19
2157 2335 1.272704 GGATGAACAAGGGAAGGCCTT 60.273 52.381 20.65 20.65 0.00 4.35
2158 2336 2.025321 GGATGAACAAGGGAAGGCCTTA 60.025 50.000 20.54 0.00 0.00 2.69
2159 2337 3.373110 GGATGAACAAGGGAAGGCCTTAT 60.373 47.826 20.54 4.41 0.00 1.73
2160 2338 3.825908 TGAACAAGGGAAGGCCTTATT 57.174 42.857 20.54 11.12 0.00 1.40
2161 2339 4.126520 TGAACAAGGGAAGGCCTTATTT 57.873 40.909 20.54 10.34 0.00 1.40
2162 2340 3.831911 TGAACAAGGGAAGGCCTTATTTG 59.168 43.478 20.54 22.82 0.00 2.32
2163 2341 2.179427 ACAAGGGAAGGCCTTATTTGC 58.821 47.619 20.54 5.12 0.00 3.68
2164 2342 2.178580 CAAGGGAAGGCCTTATTTGCA 58.821 47.619 20.54 0.00 0.00 4.08
2165 2343 2.566724 CAAGGGAAGGCCTTATTTGCAA 59.433 45.455 20.54 0.00 0.00 4.08
2166 2344 2.901291 AGGGAAGGCCTTATTTGCAAA 58.099 42.857 20.54 15.44 0.00 3.68
2167 2345 3.453868 AGGGAAGGCCTTATTTGCAAAT 58.546 40.909 26.72 26.72 0.00 2.32
2168 2346 3.198417 AGGGAAGGCCTTATTTGCAAATG 59.802 43.478 30.43 17.22 0.00 2.32
2169 2347 3.055167 GGGAAGGCCTTATTTGCAAATGT 60.055 43.478 30.43 12.33 0.00 2.71
2170 2348 3.934579 GGAAGGCCTTATTTGCAAATGTG 59.065 43.478 30.43 21.90 0.00 3.21
2171 2349 3.615224 AGGCCTTATTTGCAAATGTGG 57.385 42.857 30.43 28.46 0.00 4.17
2172 2350 3.172339 AGGCCTTATTTGCAAATGTGGA 58.828 40.909 31.67 15.77 0.00 4.02
2173 2351 3.196254 AGGCCTTATTTGCAAATGTGGAG 59.804 43.478 31.67 23.26 0.00 3.86
2174 2352 3.195396 GGCCTTATTTGCAAATGTGGAGA 59.805 43.478 31.67 14.88 0.00 3.71
2175 2353 4.427312 GCCTTATTTGCAAATGTGGAGAG 58.573 43.478 31.67 20.39 0.00 3.20
2176 2354 4.678840 GCCTTATTTGCAAATGTGGAGAGG 60.679 45.833 31.67 25.73 0.00 3.69
2177 2355 4.142093 CCTTATTTGCAAATGTGGAGAGGG 60.142 45.833 30.43 17.11 0.00 4.30
2178 2356 1.631405 TTTGCAAATGTGGAGAGGGG 58.369 50.000 8.05 0.00 0.00 4.79
2179 2357 0.482446 TTGCAAATGTGGAGAGGGGT 59.518 50.000 0.00 0.00 0.00 4.95
2180 2358 0.251297 TGCAAATGTGGAGAGGGGTG 60.251 55.000 0.00 0.00 0.00 4.61
2181 2359 0.251341 GCAAATGTGGAGAGGGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
2182 2360 1.538047 CAAATGTGGAGAGGGGTGTG 58.462 55.000 0.00 0.00 0.00 3.82
2183 2361 0.405585 AAATGTGGAGAGGGGTGTGG 59.594 55.000 0.00 0.00 0.00 4.17
2184 2362 1.500783 AATGTGGAGAGGGGTGTGGG 61.501 60.000 0.00 0.00 0.00 4.61
2185 2363 2.529389 GTGGAGAGGGGTGTGGGT 60.529 66.667 0.00 0.00 0.00 4.51
2186 2364 1.229400 GTGGAGAGGGGTGTGGGTA 60.229 63.158 0.00 0.00 0.00 3.69
2187 2365 0.620700 GTGGAGAGGGGTGTGGGTAT 60.621 60.000 0.00 0.00 0.00 2.73
2188 2366 1.020462 TGGAGAGGGGTGTGGGTATA 58.980 55.000 0.00 0.00 0.00 1.47
2189 2367 1.583611 TGGAGAGGGGTGTGGGTATAT 59.416 52.381 0.00 0.00 0.00 0.86
2190 2368 2.021441 TGGAGAGGGGTGTGGGTATATT 60.021 50.000 0.00 0.00 0.00 1.28
2191 2369 3.053826 GGAGAGGGGTGTGGGTATATTT 58.946 50.000 0.00 0.00 0.00 1.40
2192 2370 3.181443 GGAGAGGGGTGTGGGTATATTTG 60.181 52.174 0.00 0.00 0.00 2.32
2193 2371 2.174854 AGAGGGGTGTGGGTATATTTGC 59.825 50.000 0.00 0.00 0.00 3.68
2194 2372 1.926665 AGGGGTGTGGGTATATTTGCA 59.073 47.619 0.00 0.00 0.00 4.08
2195 2373 2.313342 AGGGGTGTGGGTATATTTGCAA 59.687 45.455 0.00 0.00 0.00 4.08
2196 2374 3.100671 GGGGTGTGGGTATATTTGCAAA 58.899 45.455 15.44 15.44 0.00 3.68
2197 2375 3.515901 GGGGTGTGGGTATATTTGCAAAA 59.484 43.478 17.19 6.25 0.00 2.44
2198 2376 4.163268 GGGGTGTGGGTATATTTGCAAAAT 59.837 41.667 17.19 12.93 0.00 1.82
2199 2377 5.338789 GGGGTGTGGGTATATTTGCAAAATT 60.339 40.000 17.19 9.10 0.00 1.82
2200 2378 5.584251 GGGTGTGGGTATATTTGCAAAATTG 59.416 40.000 17.19 0.00 0.00 2.32
2201 2379 6.169800 GGTGTGGGTATATTTGCAAAATTGT 58.830 36.000 17.19 1.72 0.00 2.71
2202 2380 6.312672 GGTGTGGGTATATTTGCAAAATTGTC 59.687 38.462 17.19 6.33 0.00 3.18
2203 2381 6.034470 GTGTGGGTATATTTGCAAAATTGTCG 59.966 38.462 17.19 0.00 0.00 4.35
2204 2382 6.096695 GTGGGTATATTTGCAAAATTGTCGT 58.903 36.000 17.19 0.00 0.00 4.34
2205 2383 7.094334 TGTGGGTATATTTGCAAAATTGTCGTA 60.094 33.333 17.19 2.28 0.00 3.43
2206 2384 7.431084 GTGGGTATATTTGCAAAATTGTCGTAG 59.569 37.037 17.19 0.00 0.00 3.51
2207 2385 7.121463 TGGGTATATTTGCAAAATTGTCGTAGT 59.879 33.333 17.19 0.00 0.00 2.73
2208 2386 7.971722 GGGTATATTTGCAAAATTGTCGTAGTT 59.028 33.333 17.19 0.00 0.00 2.24
2209 2387 9.349145 GGTATATTTGCAAAATTGTCGTAGTTT 57.651 29.630 17.19 0.00 0.00 2.66
2211 2389 6.763303 ATTTGCAAAATTGTCGTAGTTTCC 57.237 33.333 17.19 0.00 0.00 3.13
2212 2390 5.508200 TTGCAAAATTGTCGTAGTTTCCT 57.492 34.783 0.00 0.00 0.00 3.36
2213 2391 5.508200 TGCAAAATTGTCGTAGTTTCCTT 57.492 34.783 0.00 0.00 0.00 3.36
2214 2392 5.516090 TGCAAAATTGTCGTAGTTTCCTTC 58.484 37.500 0.00 0.00 0.00 3.46
2215 2393 4.915667 GCAAAATTGTCGTAGTTTCCTTCC 59.084 41.667 0.00 0.00 0.00 3.46
2216 2394 5.278315 GCAAAATTGTCGTAGTTTCCTTCCT 60.278 40.000 0.00 0.00 0.00 3.36
2217 2395 6.072893 GCAAAATTGTCGTAGTTTCCTTCCTA 60.073 38.462 0.00 0.00 0.00 2.94
2218 2396 7.361799 GCAAAATTGTCGTAGTTTCCTTCCTAT 60.362 37.037 0.00 0.00 0.00 2.57
2219 2397 7.845066 AAATTGTCGTAGTTTCCTTCCTATC 57.155 36.000 0.00 0.00 0.00 2.08
2220 2398 4.996788 TGTCGTAGTTTCCTTCCTATCC 57.003 45.455 0.00 0.00 0.00 2.59
2221 2399 3.379372 TGTCGTAGTTTCCTTCCTATCCG 59.621 47.826 0.00 0.00 0.00 4.18
2222 2400 3.379688 GTCGTAGTTTCCTTCCTATCCGT 59.620 47.826 0.00 0.00 0.00 4.69
2223 2401 3.629398 TCGTAGTTTCCTTCCTATCCGTC 59.371 47.826 0.00 0.00 0.00 4.79
2224 2402 3.379372 CGTAGTTTCCTTCCTATCCGTCA 59.621 47.826 0.00 0.00 0.00 4.35
2225 2403 4.497674 CGTAGTTTCCTTCCTATCCGTCAG 60.498 50.000 0.00 0.00 0.00 3.51
2226 2404 3.709587 AGTTTCCTTCCTATCCGTCAGA 58.290 45.455 0.00 0.00 0.00 3.27
2227 2405 4.290942 AGTTTCCTTCCTATCCGTCAGAT 58.709 43.478 0.00 0.00 39.15 2.90
2228 2406 5.455872 AGTTTCCTTCCTATCCGTCAGATA 58.544 41.667 0.00 0.00 36.33 1.98
2229 2407 6.078664 AGTTTCCTTCCTATCCGTCAGATAT 58.921 40.000 0.00 0.00 36.84 1.63
2230 2408 7.239438 AGTTTCCTTCCTATCCGTCAGATATA 58.761 38.462 0.00 0.00 36.84 0.86
2231 2409 7.394923 AGTTTCCTTCCTATCCGTCAGATATAG 59.605 40.741 0.00 0.00 36.84 1.31
2232 2410 6.638021 TCCTTCCTATCCGTCAGATATAGA 57.362 41.667 0.00 0.00 36.84 1.98
2233 2411 7.214460 TCCTTCCTATCCGTCAGATATAGAT 57.786 40.000 0.00 0.00 36.84 1.98
2234 2412 7.284074 TCCTTCCTATCCGTCAGATATAGATC 58.716 42.308 0.00 0.00 36.84 2.75
2235 2413 6.203915 CCTTCCTATCCGTCAGATATAGATCG 59.796 46.154 0.00 0.00 36.84 3.69
2236 2414 5.612351 TCCTATCCGTCAGATATAGATCGG 58.388 45.833 0.00 0.00 36.84 4.18
2241 2419 3.408288 GTCAGATATAGATCGGACGGC 57.592 52.381 13.57 0.00 44.04 5.68
2242 2420 2.097791 GTCAGATATAGATCGGACGGCC 59.902 54.545 13.57 0.00 44.04 6.13
2243 2421 2.026169 TCAGATATAGATCGGACGGCCT 60.026 50.000 5.33 0.00 37.15 5.19
2244 2422 3.199289 TCAGATATAGATCGGACGGCCTA 59.801 47.826 5.33 0.00 37.15 3.93
2245 2423 4.138290 CAGATATAGATCGGACGGCCTAT 58.862 47.826 5.33 0.00 37.15 2.57
2246 2424 5.071384 TCAGATATAGATCGGACGGCCTATA 59.929 44.000 5.33 0.25 37.15 1.31
2247 2425 5.941058 CAGATATAGATCGGACGGCCTATAT 59.059 44.000 5.33 6.08 37.45 0.86
2248 2426 6.431543 CAGATATAGATCGGACGGCCTATATT 59.568 42.308 5.33 0.00 35.87 1.28
2249 2427 4.920640 ATAGATCGGACGGCCTATATTG 57.079 45.455 5.33 0.00 0.00 1.90
2250 2428 1.204941 AGATCGGACGGCCTATATTGC 59.795 52.381 5.33 0.00 0.00 3.56
2251 2429 0.973632 ATCGGACGGCCTATATTGCA 59.026 50.000 5.33 0.00 0.00 4.08
2252 2430 0.317160 TCGGACGGCCTATATTGCAG 59.683 55.000 5.33 0.00 0.00 4.41
2253 2431 0.670546 CGGACGGCCTATATTGCAGG 60.671 60.000 5.33 0.00 36.16 4.85
2254 2432 0.685097 GGACGGCCTATATTGCAGGA 59.315 55.000 0.00 0.00 34.91 3.86
2255 2433 1.279271 GGACGGCCTATATTGCAGGAT 59.721 52.381 0.00 0.00 34.91 3.24
2256 2434 2.350522 GACGGCCTATATTGCAGGATG 58.649 52.381 0.00 0.00 34.91 3.51
2257 2435 1.003580 ACGGCCTATATTGCAGGATGG 59.996 52.381 0.00 0.00 34.91 3.51
2258 2436 1.467920 GGCCTATATTGCAGGATGGC 58.532 55.000 0.00 10.13 34.91 4.40
2259 2437 1.272092 GGCCTATATTGCAGGATGGCA 60.272 52.381 17.22 0.00 43.19 4.92
2260 2438 2.089980 GCCTATATTGCAGGATGGCAG 58.910 52.381 12.68 0.00 45.88 4.85
2261 2439 2.719739 CCTATATTGCAGGATGGCAGG 58.280 52.381 0.00 0.00 45.88 4.85
2262 2440 2.089980 CTATATTGCAGGATGGCAGGC 58.910 52.381 0.00 0.00 45.88 4.85
2263 2441 0.186630 ATATTGCAGGATGGCAGGCA 59.813 50.000 0.00 0.00 45.88 4.75
2264 2442 0.752743 TATTGCAGGATGGCAGGCAC 60.753 55.000 0.00 0.00 45.88 5.01
2265 2443 2.791613 ATTGCAGGATGGCAGGCACA 62.792 55.000 0.00 0.00 45.88 4.57
2266 2444 3.446570 GCAGGATGGCAGGCACAC 61.447 66.667 0.00 0.00 35.86 3.82
2267 2445 3.129502 CAGGATGGCAGGCACACG 61.130 66.667 0.00 0.00 0.00 4.49
2268 2446 3.321648 AGGATGGCAGGCACACGA 61.322 61.111 0.00 0.00 0.00 4.35
2269 2447 2.124570 GGATGGCAGGCACACGAT 60.125 61.111 0.00 0.00 0.00 3.73
2270 2448 2.182842 GGATGGCAGGCACACGATC 61.183 63.158 0.00 0.00 0.00 3.69
2271 2449 1.450134 GATGGCAGGCACACGATCA 60.450 57.895 0.00 0.00 0.00 2.92
2272 2450 0.816825 GATGGCAGGCACACGATCAT 60.817 55.000 0.00 0.00 0.00 2.45
2273 2451 0.816825 ATGGCAGGCACACGATCATC 60.817 55.000 0.00 0.00 0.00 2.92
2274 2452 1.153289 GGCAGGCACACGATCATCT 60.153 57.895 0.00 0.00 0.00 2.90
2275 2453 1.156645 GGCAGGCACACGATCATCTC 61.157 60.000 0.00 0.00 0.00 2.75
2276 2454 1.156645 GCAGGCACACGATCATCTCC 61.157 60.000 0.00 0.00 0.00 3.71
2277 2455 0.531532 CAGGCACACGATCATCTCCC 60.532 60.000 0.00 0.00 0.00 4.30
2278 2456 0.977627 AGGCACACGATCATCTCCCA 60.978 55.000 0.00 0.00 0.00 4.37
2279 2457 0.811616 GGCACACGATCATCTCCCAC 60.812 60.000 0.00 0.00 0.00 4.61
2280 2458 0.108186 GCACACGATCATCTCCCACA 60.108 55.000 0.00 0.00 0.00 4.17
2281 2459 1.675714 GCACACGATCATCTCCCACAA 60.676 52.381 0.00 0.00 0.00 3.33
2282 2460 2.910199 CACACGATCATCTCCCACAAT 58.090 47.619 0.00 0.00 0.00 2.71
2283 2461 2.610833 CACACGATCATCTCCCACAATG 59.389 50.000 0.00 0.00 0.00 2.82
2284 2462 1.600957 CACGATCATCTCCCACAATGC 59.399 52.381 0.00 0.00 0.00 3.56
2285 2463 1.487976 ACGATCATCTCCCACAATGCT 59.512 47.619 0.00 0.00 0.00 3.79
2286 2464 2.092753 ACGATCATCTCCCACAATGCTT 60.093 45.455 0.00 0.00 0.00 3.91
2287 2465 3.134623 ACGATCATCTCCCACAATGCTTA 59.865 43.478 0.00 0.00 0.00 3.09
2288 2466 4.202398 ACGATCATCTCCCACAATGCTTAT 60.202 41.667 0.00 0.00 0.00 1.73
2289 2467 4.758674 CGATCATCTCCCACAATGCTTATT 59.241 41.667 0.00 0.00 0.00 1.40
2290 2468 5.934043 CGATCATCTCCCACAATGCTTATTA 59.066 40.000 0.00 0.00 0.00 0.98
2291 2469 6.596888 CGATCATCTCCCACAATGCTTATTAT 59.403 38.462 0.00 0.00 0.00 1.28
2292 2470 7.765819 CGATCATCTCCCACAATGCTTATTATA 59.234 37.037 0.00 0.00 0.00 0.98
2293 2471 9.453572 GATCATCTCCCACAATGCTTATTATAA 57.546 33.333 0.00 0.00 0.00 0.98
2294 2472 8.853077 TCATCTCCCACAATGCTTATTATAAG 57.147 34.615 7.56 7.56 0.00 1.73
2295 2473 8.659527 TCATCTCCCACAATGCTTATTATAAGA 58.340 33.333 15.40 2.11 0.00 2.10
2296 2474 8.944029 CATCTCCCACAATGCTTATTATAAGAG 58.056 37.037 15.40 4.83 0.00 2.85
2297 2475 8.034313 TCTCCCACAATGCTTATTATAAGAGT 57.966 34.615 15.40 5.37 0.00 3.24
2298 2476 9.154632 TCTCCCACAATGCTTATTATAAGAGTA 57.845 33.333 15.40 2.07 0.00 2.59
2299 2477 9.429359 CTCCCACAATGCTTATTATAAGAGTAG 57.571 37.037 15.40 5.13 0.00 2.57
2300 2478 8.375506 TCCCACAATGCTTATTATAAGAGTAGG 58.624 37.037 15.40 9.65 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
287 295 4.229096 ACATCGTTAAACAAGCAGCAATG 58.771 39.130 0.00 0.00 0.00 2.82
288 296 4.503741 ACATCGTTAAACAAGCAGCAAT 57.496 36.364 0.00 0.00 0.00 3.56
289 297 3.980646 ACATCGTTAAACAAGCAGCAA 57.019 38.095 0.00 0.00 0.00 3.91
290 298 3.313803 TCAACATCGTTAAACAAGCAGCA 59.686 39.130 0.00 0.00 0.00 4.41
293 301 5.038033 GGTTTCAACATCGTTAAACAAGCA 58.962 37.500 0.00 0.00 34.30 3.91
310 359 0.537143 AGCAAGGCATGACGGTTTCA 60.537 50.000 0.00 0.00 39.11 2.69
456 505 1.474330 TGCTAGCCGTCAGATCTCAA 58.526 50.000 13.29 0.00 0.00 3.02
565 614 1.302752 TGCAGCAGCGGAGATTTGT 60.303 52.632 0.00 0.00 46.23 2.83
738 812 2.609610 GTGGGAGTGTAGGGGGCA 60.610 66.667 0.00 0.00 0.00 5.36
912 987 1.489560 CGTTGGGGAGAGAAAGGGGT 61.490 60.000 0.00 0.00 0.00 4.95
1140 1220 3.359523 CCGACGGTGAGGACGACA 61.360 66.667 5.48 0.00 34.93 4.35
1229 1309 4.452455 ACAAAAGATAAGACAGCCTCAACG 59.548 41.667 0.00 0.00 0.00 4.10
1258 1341 1.377594 ATGCTCGACATTGCCTGCA 60.378 52.632 0.00 0.00 34.40 4.41
1312 1400 2.448582 ATCCCCGCCGGCTTCATAA 61.449 57.895 26.68 5.15 0.00 1.90
1313 1401 2.847234 ATCCCCGCCGGCTTCATA 60.847 61.111 26.68 6.33 0.00 2.15
1799 1976 3.636764 CCCATGAAGTAATAGGCCCAAAC 59.363 47.826 0.00 0.00 0.00 2.93
1800 1977 3.909732 CCCATGAAGTAATAGGCCCAAA 58.090 45.455 0.00 0.00 0.00 3.28
1808 1985 2.930950 GTGGCAGCCCATGAAGTAATA 58.069 47.619 9.64 0.00 44.51 0.98
1909 2087 3.559811 TCATGGACCATGACAGTTCTTGG 60.560 47.826 29.67 3.56 44.60 3.61
1949 2127 3.138798 CAGCTGCCCACTCCATGC 61.139 66.667 0.00 0.00 0.00 4.06
2059 2237 9.166173 CTACAAGAATTCTGTTAATCCATGACA 57.834 33.333 9.17 0.00 0.00 3.58
2091 2269 7.478322 ACTCATACAAATGCATCTTGATGTTC 58.522 34.615 20.96 0.00 32.76 3.18
2092 2270 7.400599 ACTCATACAAATGCATCTTGATGTT 57.599 32.000 20.96 1.04 32.76 2.71
2093 2271 7.772292 ACTACTCATACAAATGCATCTTGATGT 59.228 33.333 20.96 14.21 32.76 3.06
2094 2272 8.151141 ACTACTCATACAAATGCATCTTGATG 57.849 34.615 20.96 18.39 32.76 3.07
2095 2273 8.743085 AACTACTCATACAAATGCATCTTGAT 57.257 30.769 20.96 11.48 32.76 2.57
2096 2274 8.565896 AAACTACTCATACAAATGCATCTTGA 57.434 30.769 20.96 10.81 32.76 3.02
2102 2280 9.448438 ACAAGATAAACTACTCATACAAATGCA 57.552 29.630 0.00 0.00 32.76 3.96
2103 2281 9.708222 CACAAGATAAACTACTCATACAAATGC 57.292 33.333 0.00 0.00 32.76 3.56
2105 2283 9.396022 CCCACAAGATAAACTACTCATACAAAT 57.604 33.333 0.00 0.00 0.00 2.32
2106 2284 7.827236 CCCCACAAGATAAACTACTCATACAAA 59.173 37.037 0.00 0.00 0.00 2.83
2107 2285 7.181305 TCCCCACAAGATAAACTACTCATACAA 59.819 37.037 0.00 0.00 0.00 2.41
2108 2286 6.670464 TCCCCACAAGATAAACTACTCATACA 59.330 38.462 0.00 0.00 0.00 2.29
2109 2287 7.120923 TCCCCACAAGATAAACTACTCATAC 57.879 40.000 0.00 0.00 0.00 2.39
2110 2288 7.743116 TTCCCCACAAGATAAACTACTCATA 57.257 36.000 0.00 0.00 0.00 2.15
2111 2289 6.636454 TTCCCCACAAGATAAACTACTCAT 57.364 37.500 0.00 0.00 0.00 2.90
2112 2290 6.442541 TTTCCCCACAAGATAAACTACTCA 57.557 37.500 0.00 0.00 0.00 3.41
2113 2291 6.374613 CCTTTTCCCCACAAGATAAACTACTC 59.625 42.308 0.00 0.00 0.00 2.59
2114 2292 6.045106 TCCTTTTCCCCACAAGATAAACTACT 59.955 38.462 0.00 0.00 0.00 2.57
2115 2293 6.243148 TCCTTTTCCCCACAAGATAAACTAC 58.757 40.000 0.00 0.00 0.00 2.73
2116 2294 6.457159 TCCTTTTCCCCACAAGATAAACTA 57.543 37.500 0.00 0.00 0.00 2.24
2117 2295 5.333566 TCCTTTTCCCCACAAGATAAACT 57.666 39.130 0.00 0.00 0.00 2.66
2118 2296 5.714806 TCATCCTTTTCCCCACAAGATAAAC 59.285 40.000 0.00 0.00 0.00 2.01
2119 2297 5.898120 TCATCCTTTTCCCCACAAGATAAA 58.102 37.500 0.00 0.00 0.00 1.40
2120 2298 5.528600 TCATCCTTTTCCCCACAAGATAA 57.471 39.130 0.00 0.00 0.00 1.75
2121 2299 5.222233 TGTTCATCCTTTTCCCCACAAGATA 60.222 40.000 0.00 0.00 0.00 1.98
2122 2300 4.089361 GTTCATCCTTTTCCCCACAAGAT 58.911 43.478 0.00 0.00 0.00 2.40
2123 2301 3.117322 TGTTCATCCTTTTCCCCACAAGA 60.117 43.478 0.00 0.00 0.00 3.02
2124 2302 3.230134 TGTTCATCCTTTTCCCCACAAG 58.770 45.455 0.00 0.00 0.00 3.16
2125 2303 3.320610 TGTTCATCCTTTTCCCCACAA 57.679 42.857 0.00 0.00 0.00 3.33
2126 2304 3.230134 CTTGTTCATCCTTTTCCCCACA 58.770 45.455 0.00 0.00 0.00 4.17
2127 2305 2.562738 CCTTGTTCATCCTTTTCCCCAC 59.437 50.000 0.00 0.00 0.00 4.61
2128 2306 2.492567 CCCTTGTTCATCCTTTTCCCCA 60.493 50.000 0.00 0.00 0.00 4.96
2129 2307 2.179427 CCCTTGTTCATCCTTTTCCCC 58.821 52.381 0.00 0.00 0.00 4.81
2130 2308 3.169512 TCCCTTGTTCATCCTTTTCCC 57.830 47.619 0.00 0.00 0.00 3.97
2131 2309 3.511540 CCTTCCCTTGTTCATCCTTTTCC 59.488 47.826 0.00 0.00 0.00 3.13
2132 2310 3.056536 GCCTTCCCTTGTTCATCCTTTTC 60.057 47.826 0.00 0.00 0.00 2.29
2133 2311 2.899900 GCCTTCCCTTGTTCATCCTTTT 59.100 45.455 0.00 0.00 0.00 2.27
2134 2312 2.529632 GCCTTCCCTTGTTCATCCTTT 58.470 47.619 0.00 0.00 0.00 3.11
2135 2313 1.272704 GGCCTTCCCTTGTTCATCCTT 60.273 52.381 0.00 0.00 0.00 3.36
2136 2314 0.332972 GGCCTTCCCTTGTTCATCCT 59.667 55.000 0.00 0.00 0.00 3.24
2137 2315 0.332972 AGGCCTTCCCTTGTTCATCC 59.667 55.000 0.00 0.00 43.06 3.51
2138 2316 3.987594 AGGCCTTCCCTTGTTCATC 57.012 52.632 0.00 0.00 43.06 2.92
2147 2325 3.055167 ACATTTGCAAATAAGGCCTTCCC 60.055 43.478 24.49 7.52 0.00 3.97
2148 2326 3.934579 CACATTTGCAAATAAGGCCTTCC 59.065 43.478 24.49 7.15 0.00 3.46
2149 2327 3.934579 CCACATTTGCAAATAAGGCCTTC 59.065 43.478 24.49 7.84 0.00 3.46
2150 2328 3.582208 TCCACATTTGCAAATAAGGCCTT 59.418 39.130 23.69 24.18 0.00 4.35
2151 2329 3.172339 TCCACATTTGCAAATAAGGCCT 58.828 40.909 23.69 0.00 0.00 5.19
2152 2330 3.195396 TCTCCACATTTGCAAATAAGGCC 59.805 43.478 23.69 0.00 0.00 5.19
2153 2331 4.427312 CTCTCCACATTTGCAAATAAGGC 58.573 43.478 23.69 0.00 0.00 4.35
2154 2332 4.142093 CCCTCTCCACATTTGCAAATAAGG 60.142 45.833 23.69 24.65 0.00 2.69
2155 2333 4.142093 CCCCTCTCCACATTTGCAAATAAG 60.142 45.833 23.69 17.76 0.00 1.73
2156 2334 3.768757 CCCCTCTCCACATTTGCAAATAA 59.231 43.478 23.69 9.41 0.00 1.40
2157 2335 3.245586 ACCCCTCTCCACATTTGCAAATA 60.246 43.478 23.69 8.18 0.00 1.40
2158 2336 2.181975 CCCCTCTCCACATTTGCAAAT 58.818 47.619 18.99 18.99 0.00 2.32
2159 2337 1.133199 ACCCCTCTCCACATTTGCAAA 60.133 47.619 15.44 15.44 0.00 3.68
2160 2338 0.482446 ACCCCTCTCCACATTTGCAA 59.518 50.000 0.00 0.00 0.00 4.08
2161 2339 0.251297 CACCCCTCTCCACATTTGCA 60.251 55.000 0.00 0.00 0.00 4.08
2162 2340 0.251341 ACACCCCTCTCCACATTTGC 60.251 55.000 0.00 0.00 0.00 3.68
2163 2341 1.538047 CACACCCCTCTCCACATTTG 58.462 55.000 0.00 0.00 0.00 2.32
2164 2342 0.405585 CCACACCCCTCTCCACATTT 59.594 55.000 0.00 0.00 0.00 2.32
2165 2343 1.500783 CCCACACCCCTCTCCACATT 61.501 60.000 0.00 0.00 0.00 2.71
2166 2344 1.925455 CCCACACCCCTCTCCACAT 60.925 63.158 0.00 0.00 0.00 3.21
2167 2345 2.038545 TACCCACACCCCTCTCCACA 62.039 60.000 0.00 0.00 0.00 4.17
2168 2346 0.620700 ATACCCACACCCCTCTCCAC 60.621 60.000 0.00 0.00 0.00 4.02
2169 2347 1.020462 TATACCCACACCCCTCTCCA 58.980 55.000 0.00 0.00 0.00 3.86
2170 2348 2.417719 ATATACCCACACCCCTCTCC 57.582 55.000 0.00 0.00 0.00 3.71
2171 2349 3.747708 GCAAATATACCCACACCCCTCTC 60.748 52.174 0.00 0.00 0.00 3.20
2172 2350 2.174854 GCAAATATACCCACACCCCTCT 59.825 50.000 0.00 0.00 0.00 3.69
2173 2351 2.092103 TGCAAATATACCCACACCCCTC 60.092 50.000 0.00 0.00 0.00 4.30
2174 2352 1.926665 TGCAAATATACCCACACCCCT 59.073 47.619 0.00 0.00 0.00 4.79
2175 2353 2.445682 TGCAAATATACCCACACCCC 57.554 50.000 0.00 0.00 0.00 4.95
2176 2354 4.810191 TTTTGCAAATATACCCACACCC 57.190 40.909 13.65 0.00 0.00 4.61
2177 2355 6.169800 ACAATTTTGCAAATATACCCACACC 58.830 36.000 13.65 0.00 0.00 4.16
2178 2356 6.034470 CGACAATTTTGCAAATATACCCACAC 59.966 38.462 13.65 0.00 0.00 3.82
2179 2357 6.096036 CGACAATTTTGCAAATATACCCACA 58.904 36.000 13.65 0.00 0.00 4.17
2180 2358 6.096695 ACGACAATTTTGCAAATATACCCAC 58.903 36.000 13.65 0.19 0.00 4.61
2181 2359 6.274157 ACGACAATTTTGCAAATATACCCA 57.726 33.333 13.65 0.00 0.00 4.51
2182 2360 7.477494 ACTACGACAATTTTGCAAATATACCC 58.523 34.615 13.65 0.77 0.00 3.69
2183 2361 8.905103 AACTACGACAATTTTGCAAATATACC 57.095 30.769 13.65 2.33 0.00 2.73
2185 2363 9.562583 GGAAACTACGACAATTTTGCAAATATA 57.437 29.630 13.65 0.00 0.00 0.86
2186 2364 8.303876 AGGAAACTACGACAATTTTGCAAATAT 58.696 29.630 13.65 6.85 40.61 1.28
2187 2365 7.653647 AGGAAACTACGACAATTTTGCAAATA 58.346 30.769 13.65 4.65 40.61 1.40
2188 2366 6.512297 AGGAAACTACGACAATTTTGCAAAT 58.488 32.000 13.65 0.00 40.61 2.32
2189 2367 5.897050 AGGAAACTACGACAATTTTGCAAA 58.103 33.333 8.05 8.05 40.61 3.68
2190 2368 5.508200 AGGAAACTACGACAATTTTGCAA 57.492 34.783 0.00 0.00 40.61 4.08
2191 2369 5.506649 GGAAGGAAACTACGACAATTTTGCA 60.507 40.000 0.00 0.00 42.68 4.08
2192 2370 4.915667 GGAAGGAAACTACGACAATTTTGC 59.084 41.667 0.00 0.00 42.68 3.68
2193 2371 6.313744 AGGAAGGAAACTACGACAATTTTG 57.686 37.500 0.00 0.00 42.68 2.44
2194 2372 7.336176 GGATAGGAAGGAAACTACGACAATTTT 59.664 37.037 0.00 0.00 42.68 1.82
2195 2373 6.822170 GGATAGGAAGGAAACTACGACAATTT 59.178 38.462 0.00 0.00 42.68 1.82
2196 2374 6.346896 GGATAGGAAGGAAACTACGACAATT 58.653 40.000 0.00 0.00 42.68 2.32
2197 2375 5.451520 CGGATAGGAAGGAAACTACGACAAT 60.452 44.000 0.00 0.00 42.68 2.71
2198 2376 4.142315 CGGATAGGAAGGAAACTACGACAA 60.142 45.833 0.00 0.00 42.68 3.18
2199 2377 3.379372 CGGATAGGAAGGAAACTACGACA 59.621 47.826 0.00 0.00 42.68 4.35
2200 2378 3.379688 ACGGATAGGAAGGAAACTACGAC 59.620 47.826 0.00 0.00 42.68 4.34
2201 2379 3.624777 ACGGATAGGAAGGAAACTACGA 58.375 45.455 0.00 0.00 42.68 3.43
2202 2380 3.379372 TGACGGATAGGAAGGAAACTACG 59.621 47.826 0.00 0.00 42.68 3.51
2203 2381 4.643784 TCTGACGGATAGGAAGGAAACTAC 59.356 45.833 0.00 0.00 42.68 2.73
2204 2382 4.863548 TCTGACGGATAGGAAGGAAACTA 58.136 43.478 0.00 0.00 42.68 2.24
2205 2383 4.290942 ATCTGACGGATAGGAAGGAAACT 58.709 43.478 0.00 0.00 35.69 2.66
2206 2384 4.674281 ATCTGACGGATAGGAAGGAAAC 57.326 45.455 0.00 0.00 32.04 2.78
2207 2385 7.467650 TCTATATCTGACGGATAGGAAGGAAA 58.532 38.462 9.78 0.00 39.89 3.13
2208 2386 7.029053 TCTATATCTGACGGATAGGAAGGAA 57.971 40.000 9.78 0.00 39.89 3.36
2209 2387 6.638021 TCTATATCTGACGGATAGGAAGGA 57.362 41.667 9.78 1.72 39.89 3.36
2210 2388 6.203915 CGATCTATATCTGACGGATAGGAAGG 59.796 46.154 9.78 4.24 39.89 3.46
2211 2389 6.203915 CCGATCTATATCTGACGGATAGGAAG 59.796 46.154 9.78 7.25 42.40 3.46
2212 2390 6.056236 CCGATCTATATCTGACGGATAGGAA 58.944 44.000 9.78 0.00 42.40 3.36
2213 2391 5.365895 TCCGATCTATATCTGACGGATAGGA 59.634 44.000 9.78 10.10 43.30 2.94
2214 2392 5.612351 TCCGATCTATATCTGACGGATAGG 58.388 45.833 9.78 4.78 43.30 2.57
2221 2399 2.097791 GGCCGTCCGATCTATATCTGAC 59.902 54.545 0.00 3.47 40.83 3.51
2222 2400 2.026169 AGGCCGTCCGATCTATATCTGA 60.026 50.000 0.00 0.00 37.47 3.27
2223 2401 2.370349 AGGCCGTCCGATCTATATCTG 58.630 52.381 0.00 0.00 37.47 2.90
2224 2402 2.810870 AGGCCGTCCGATCTATATCT 57.189 50.000 0.00 0.00 37.47 1.98
2225 2403 6.613233 CAATATAGGCCGTCCGATCTATATC 58.387 44.000 15.29 0.00 35.53 1.63
2226 2404 5.047943 GCAATATAGGCCGTCCGATCTATAT 60.048 44.000 0.00 11.98 37.13 0.86
2227 2405 4.277672 GCAATATAGGCCGTCCGATCTATA 59.722 45.833 0.00 9.58 37.47 1.31
2228 2406 3.068307 GCAATATAGGCCGTCCGATCTAT 59.932 47.826 0.00 0.00 37.47 1.98
2229 2407 2.426024 GCAATATAGGCCGTCCGATCTA 59.574 50.000 0.00 0.00 37.47 1.98
2230 2408 1.204941 GCAATATAGGCCGTCCGATCT 59.795 52.381 0.00 0.00 37.47 2.75
2231 2409 1.067142 TGCAATATAGGCCGTCCGATC 60.067 52.381 0.00 0.00 37.47 3.69
2232 2410 0.973632 TGCAATATAGGCCGTCCGAT 59.026 50.000 0.00 0.00 37.47 4.18
2233 2411 0.317160 CTGCAATATAGGCCGTCCGA 59.683 55.000 0.00 0.00 37.47 4.55
2234 2412 0.670546 CCTGCAATATAGGCCGTCCG 60.671 60.000 0.00 0.00 37.47 4.79
2235 2413 0.685097 TCCTGCAATATAGGCCGTCC 59.315 55.000 0.00 0.00 35.23 4.79
2236 2414 2.350522 CATCCTGCAATATAGGCCGTC 58.649 52.381 0.00 0.00 35.23 4.79
2237 2415 1.003580 CCATCCTGCAATATAGGCCGT 59.996 52.381 0.00 0.00 35.23 5.68
2238 2416 1.742761 CCATCCTGCAATATAGGCCG 58.257 55.000 0.00 0.00 35.23 6.13
2239 2417 1.272092 TGCCATCCTGCAATATAGGCC 60.272 52.381 12.50 0.00 38.56 5.19
2240 2418 2.089980 CTGCCATCCTGCAATATAGGC 58.910 52.381 9.23 9.23 41.51 3.93
2241 2419 2.719739 CCTGCCATCCTGCAATATAGG 58.280 52.381 0.00 0.00 41.51 2.57
2242 2420 2.089980 GCCTGCCATCCTGCAATATAG 58.910 52.381 0.00 0.00 41.51 1.31
2243 2421 1.424684 TGCCTGCCATCCTGCAATATA 59.575 47.619 0.00 0.00 41.51 0.86
2244 2422 0.186630 TGCCTGCCATCCTGCAATAT 59.813 50.000 0.00 0.00 41.51 1.28
2245 2423 0.752743 GTGCCTGCCATCCTGCAATA 60.753 55.000 0.00 0.00 41.51 1.90
2246 2424 2.056223 GTGCCTGCCATCCTGCAAT 61.056 57.895 0.00 0.00 41.51 3.56
2247 2425 2.677524 GTGCCTGCCATCCTGCAA 60.678 61.111 0.00 0.00 41.51 4.08
2248 2426 3.969119 TGTGCCTGCCATCCTGCA 61.969 61.111 0.00 0.00 39.37 4.41
2249 2427 3.446570 GTGTGCCTGCCATCCTGC 61.447 66.667 0.00 0.00 0.00 4.85
2250 2428 2.881539 ATCGTGTGCCTGCCATCCTG 62.882 60.000 0.00 0.00 0.00 3.86
2251 2429 2.599645 GATCGTGTGCCTGCCATCCT 62.600 60.000 0.00 0.00 0.00 3.24
2252 2430 2.124570 ATCGTGTGCCTGCCATCC 60.125 61.111 0.00 0.00 0.00 3.51
2253 2431 0.816825 ATGATCGTGTGCCTGCCATC 60.817 55.000 0.00 0.00 0.00 3.51
2254 2432 0.816825 GATGATCGTGTGCCTGCCAT 60.817 55.000 0.00 0.00 0.00 4.40
2255 2433 1.450134 GATGATCGTGTGCCTGCCA 60.450 57.895 0.00 0.00 0.00 4.92
2256 2434 1.153289 AGATGATCGTGTGCCTGCC 60.153 57.895 0.00 0.00 0.00 4.85
2257 2435 1.156645 GGAGATGATCGTGTGCCTGC 61.157 60.000 0.00 0.00 0.00 4.85
2258 2436 0.531532 GGGAGATGATCGTGTGCCTG 60.532 60.000 14.56 0.00 0.00 4.85
2259 2437 0.977627 TGGGAGATGATCGTGTGCCT 60.978 55.000 21.02 0.00 0.00 4.75
2260 2438 0.811616 GTGGGAGATGATCGTGTGCC 60.812 60.000 14.91 14.91 0.00 5.01
2261 2439 0.108186 TGTGGGAGATGATCGTGTGC 60.108 55.000 0.00 0.00 0.00 4.57
2262 2440 2.385013 TTGTGGGAGATGATCGTGTG 57.615 50.000 0.00 0.00 0.00 3.82
2263 2441 2.910199 CATTGTGGGAGATGATCGTGT 58.090 47.619 0.00 0.00 0.00 4.49
2264 2442 1.600957 GCATTGTGGGAGATGATCGTG 59.399 52.381 0.00 0.00 0.00 4.35
2265 2443 1.487976 AGCATTGTGGGAGATGATCGT 59.512 47.619 0.00 0.00 0.00 3.73
2266 2444 2.251409 AGCATTGTGGGAGATGATCG 57.749 50.000 0.00 0.00 0.00 3.69
2267 2445 7.934855 ATAATAAGCATTGTGGGAGATGATC 57.065 36.000 0.00 0.00 0.00 2.92
2268 2446 9.458727 CTTATAATAAGCATTGTGGGAGATGAT 57.541 33.333 0.00 0.00 0.00 2.45
2269 2447 8.659527 TCTTATAATAAGCATTGTGGGAGATGA 58.340 33.333 0.00 0.00 0.00 2.92
2270 2448 8.853077 TCTTATAATAAGCATTGTGGGAGATG 57.147 34.615 0.00 0.00 0.00 2.90
2271 2449 8.664079 ACTCTTATAATAAGCATTGTGGGAGAT 58.336 33.333 0.00 0.00 0.00 2.75
2272 2450 8.034313 ACTCTTATAATAAGCATTGTGGGAGA 57.966 34.615 0.00 0.00 0.00 3.71
2273 2451 9.429359 CTACTCTTATAATAAGCATTGTGGGAG 57.571 37.037 0.00 0.00 0.00 4.30
2274 2452 8.375506 CCTACTCTTATAATAAGCATTGTGGGA 58.624 37.037 0.00 0.00 0.00 4.37
2275 2453 8.553459 CCTACTCTTATAATAAGCATTGTGGG 57.447 38.462 0.00 0.00 0.00 4.61



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.