Multiple sequence alignment - TraesCS2A01G228500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G228500 | chr2A | 100.000 | 2301 | 0 | 0 | 1 | 2301 | 251254160 | 251256460 | 0.000000e+00 | 4250.0 |
1 | TraesCS2A01G228500 | chr2A | 93.715 | 1082 | 65 | 2 | 526 | 1605 | 12657025 | 12658105 | 0.000000e+00 | 1618.0 |
2 | TraesCS2A01G228500 | chr2A | 93.187 | 411 | 21 | 3 | 1 | 408 | 12636097 | 12636503 | 4.230000e-167 | 597.0 |
3 | TraesCS2A01G228500 | chr2A | 79.070 | 344 | 59 | 10 | 686 | 1026 | 768939306 | 768939639 | 8.270000e-55 | 224.0 |
4 | TraesCS2A01G228500 | chr6A | 96.557 | 2091 | 67 | 4 | 1 | 2088 | 574248220 | 574250308 | 0.000000e+00 | 3458.0 |
5 | TraesCS2A01G228500 | chr6A | 87.529 | 425 | 51 | 2 | 1665 | 2088 | 292861123 | 292860700 | 7.390000e-135 | 490.0 |
6 | TraesCS2A01G228500 | chr6A | 82.456 | 171 | 24 | 3 | 63 | 227 | 292862648 | 292862478 | 6.630000e-31 | 145.0 |
7 | TraesCS2A01G228500 | chr4A | 81.343 | 2144 | 269 | 58 | 1 | 2088 | 398096791 | 398098859 | 0.000000e+00 | 1622.0 |
8 | TraesCS2A01G228500 | chr3A | 81.262 | 2140 | 276 | 63 | 1 | 2088 | 156350567 | 156352633 | 0.000000e+00 | 1615.0 |
9 | TraesCS2A01G228500 | chr3A | 80.461 | 1387 | 190 | 39 | 5 | 1375 | 117457088 | 117458409 | 0.000000e+00 | 985.0 |
10 | TraesCS2A01G228500 | chr3A | 85.738 | 610 | 74 | 8 | 1483 | 2088 | 117458483 | 117459083 | 1.160000e-177 | 632.0 |
11 | TraesCS2A01G228500 | chr7A | 82.902 | 889 | 112 | 17 | 1211 | 2091 | 49576705 | 49575849 | 0.000000e+00 | 763.0 |
12 | TraesCS2A01G228500 | chr7A | 84.817 | 382 | 57 | 1 | 1708 | 2088 | 715059741 | 715059360 | 1.290000e-102 | 383.0 |
13 | TraesCS2A01G228500 | chr7A | 95.833 | 216 | 6 | 2 | 2089 | 2301 | 275341127 | 275340912 | 1.690000e-91 | 346.0 |
14 | TraesCS2A01G228500 | chr7A | 86.747 | 166 | 19 | 3 | 63 | 227 | 648204281 | 648204118 | 5.050000e-42 | 182.0 |
15 | TraesCS2A01G228500 | chrUn | 82.638 | 887 | 114 | 14 | 1211 | 2088 | 38161990 | 38161135 | 0.000000e+00 | 749.0 |
16 | TraesCS2A01G228500 | chrUn | 84.293 | 382 | 59 | 1 | 1708 | 2088 | 435670925 | 435671306 | 2.790000e-99 | 372.0 |
17 | TraesCS2A01G228500 | chrUn | 95.814 | 215 | 7 | 1 | 2089 | 2301 | 112703996 | 112704210 | 1.690000e-91 | 346.0 |
18 | TraesCS2A01G228500 | chr5A | 96.296 | 216 | 5 | 2 | 2089 | 2301 | 44511018 | 44510803 | 3.640000e-93 | 351.0 |
19 | TraesCS2A01G228500 | chr5A | 95.853 | 217 | 5 | 2 | 2089 | 2301 | 369455826 | 369456042 | 4.700000e-92 | 348.0 |
20 | TraesCS2A01G228500 | chr5A | 94.118 | 51 | 3 | 0 | 893 | 943 | 491714986 | 491714936 | 6.820000e-11 | 78.7 |
21 | TraesCS2A01G228500 | chr2D | 96.296 | 216 | 5 | 2 | 2089 | 2301 | 392663293 | 392663508 | 3.640000e-93 | 351.0 |
22 | TraesCS2A01G228500 | chr2D | 95.833 | 216 | 6 | 2 | 2089 | 2301 | 599365033 | 599364818 | 1.690000e-91 | 346.0 |
23 | TraesCS2A01G228500 | chr5D | 95.833 | 216 | 6 | 2 | 2089 | 2301 | 243965838 | 243966053 | 1.690000e-91 | 346.0 |
24 | TraesCS2A01G228500 | chr4D | 95.833 | 216 | 6 | 2 | 2089 | 2301 | 88256949 | 88256734 | 1.690000e-91 | 346.0 |
25 | TraesCS2A01G228500 | chr1D | 95.833 | 216 | 6 | 2 | 2089 | 2301 | 427563308 | 427563523 | 1.690000e-91 | 346.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G228500 | chr2A | 251254160 | 251256460 | 2300 | False | 4250.0 | 4250 | 100.0000 | 1 | 2301 | 1 | chr2A.!!$F3 | 2300 |
1 | TraesCS2A01G228500 | chr2A | 12657025 | 12658105 | 1080 | False | 1618.0 | 1618 | 93.7150 | 526 | 1605 | 1 | chr2A.!!$F2 | 1079 |
2 | TraesCS2A01G228500 | chr6A | 574248220 | 574250308 | 2088 | False | 3458.0 | 3458 | 96.5570 | 1 | 2088 | 1 | chr6A.!!$F1 | 2087 |
3 | TraesCS2A01G228500 | chr6A | 292860700 | 292862648 | 1948 | True | 317.5 | 490 | 84.9925 | 63 | 2088 | 2 | chr6A.!!$R1 | 2025 |
4 | TraesCS2A01G228500 | chr4A | 398096791 | 398098859 | 2068 | False | 1622.0 | 1622 | 81.3430 | 1 | 2088 | 1 | chr4A.!!$F1 | 2087 |
5 | TraesCS2A01G228500 | chr3A | 156350567 | 156352633 | 2066 | False | 1615.0 | 1615 | 81.2620 | 1 | 2088 | 1 | chr3A.!!$F1 | 2087 |
6 | TraesCS2A01G228500 | chr3A | 117457088 | 117459083 | 1995 | False | 808.5 | 985 | 83.0995 | 5 | 2088 | 2 | chr3A.!!$F2 | 2083 |
7 | TraesCS2A01G228500 | chr7A | 49575849 | 49576705 | 856 | True | 763.0 | 763 | 82.9020 | 1211 | 2091 | 1 | chr7A.!!$R1 | 880 |
8 | TraesCS2A01G228500 | chrUn | 38161135 | 38161990 | 855 | True | 749.0 | 749 | 82.6380 | 1211 | 2088 | 1 | chrUn.!!$R1 | 877 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
689 | 763 | 0.401395 | GTACCCATCTCCCCCATCCA | 60.401 | 60.0 | 0.0 | 0.0 | 0.0 | 3.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2261 | 2439 | 0.108186 | TGTGGGAGATGATCGTGTGC | 60.108 | 55.0 | 0.0 | 0.0 | 0.0 | 4.57 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
46 | 48 | 0.872388 | GACCGTGCAAATCGAACCTT | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
287 | 295 | 3.758554 | ACCTGTTGTCTAAACCATCATGC | 59.241 | 43.478 | 0.00 | 0.00 | 0.00 | 4.06 |
288 | 296 | 3.758023 | CCTGTTGTCTAAACCATCATGCA | 59.242 | 43.478 | 0.00 | 0.00 | 0.00 | 3.96 |
289 | 297 | 4.400251 | CCTGTTGTCTAAACCATCATGCAT | 59.600 | 41.667 | 0.00 | 0.00 | 0.00 | 3.96 |
290 | 298 | 5.105635 | CCTGTTGTCTAAACCATCATGCATT | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 3.56 |
293 | 301 | 4.018490 | TGTCTAAACCATCATGCATTGCT | 58.982 | 39.130 | 10.49 | 0.00 | 0.00 | 3.91 |
310 | 359 | 3.980646 | TGCTGCTTGTTTAACGATGTT | 57.019 | 38.095 | 0.00 | 0.00 | 0.00 | 2.71 |
439 | 488 | 0.603065 | CATCCCACGGATCGCAGATA | 59.397 | 55.000 | 0.00 | 0.00 | 40.98 | 1.98 |
540 | 589 | 3.431486 | GCTGCTGCCTTATCTTCTACAGT | 60.431 | 47.826 | 3.85 | 0.00 | 0.00 | 3.55 |
565 | 614 | 1.787058 | TCCTCTCGGAATCCCCAGATA | 59.213 | 52.381 | 0.00 | 0.00 | 36.03 | 1.98 |
585 | 634 | 1.002868 | AAATCTCCGCTGCTGCACT | 60.003 | 52.632 | 16.29 | 0.00 | 39.64 | 4.40 |
689 | 763 | 0.401395 | GTACCCATCTCCCCCATCCA | 60.401 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
731 | 805 | 1.464395 | TGCCCACCTACCCCTCAAA | 60.464 | 57.895 | 0.00 | 0.00 | 0.00 | 2.69 |
738 | 812 | 2.924101 | TACCCCTCAAACGGCCGT | 60.924 | 61.111 | 28.70 | 28.70 | 0.00 | 5.68 |
912 | 987 | 0.854218 | CTCACCTCTAGCCTCCCCTA | 59.146 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1081 | 1161 | 2.244117 | CTGCTACTGGGCCATGTCGT | 62.244 | 60.000 | 6.72 | 3.59 | 0.00 | 4.34 |
1140 | 1220 | 3.138625 | CCCGCATCCGTCACCTAT | 58.861 | 61.111 | 0.00 | 0.00 | 0.00 | 2.57 |
1174 | 1254 | 1.070786 | GGCTTCTCCGTTGACCACA | 59.929 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
1229 | 1309 | 5.189934 | TCCCTTTCCTCTCTACTTTGGATTC | 59.810 | 44.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1258 | 1341 | 6.006449 | AGGCTGTCTTATCTTTTGTCAACAT | 58.994 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1312 | 1400 | 7.272144 | ACTTGGTGGATAAGGTTCTATCTTT | 57.728 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1313 | 1401 | 7.699878 | ACTTGGTGGATAAGGTTCTATCTTTT | 58.300 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
1318 | 1406 | 9.847224 | GGTGGATAAGGTTCTATCTTTTATGAA | 57.153 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1799 | 1976 | 7.699812 | GCTAAAATTTAGTGAGCTGGAATTCTG | 59.300 | 37.037 | 13.56 | 0.18 | 0.00 | 3.02 |
1800 | 1977 | 7.530426 | AAAATTTAGTGAGCTGGAATTCTGT | 57.470 | 32.000 | 5.23 | 0.00 | 0.00 | 3.41 |
1808 | 1985 | 1.928868 | CTGGAATTCTGTTTGGGCCT | 58.071 | 50.000 | 4.53 | 0.00 | 0.00 | 5.19 |
1917 | 2095 | 0.706433 | ACCCATGATGGCCAAGAACT | 59.294 | 50.000 | 10.96 | 0.00 | 35.79 | 3.01 |
1949 | 2127 | 4.497340 | CCATGACGGTTTTAAATGATCCGG | 60.497 | 45.833 | 18.49 | 0.00 | 44.54 | 5.14 |
2059 | 2237 | 1.341531 | GGTCGATGACGGATCCAATCT | 59.658 | 52.381 | 13.41 | 0.00 | 40.21 | 2.40 |
2091 | 2269 | 7.201530 | GGATTAACAGAATTCTTGTAGTGACGG | 60.202 | 40.741 | 4.86 | 0.00 | 0.00 | 4.79 |
2092 | 2270 | 4.866508 | ACAGAATTCTTGTAGTGACGGA | 57.133 | 40.909 | 4.86 | 0.00 | 0.00 | 4.69 |
2093 | 2271 | 5.209818 | ACAGAATTCTTGTAGTGACGGAA | 57.790 | 39.130 | 4.86 | 0.00 | 0.00 | 4.30 |
2094 | 2272 | 4.989168 | ACAGAATTCTTGTAGTGACGGAAC | 59.011 | 41.667 | 4.86 | 0.00 | 0.00 | 3.62 |
2095 | 2273 | 4.988540 | CAGAATTCTTGTAGTGACGGAACA | 59.011 | 41.667 | 4.86 | 0.00 | 0.00 | 3.18 |
2096 | 2274 | 5.639506 | CAGAATTCTTGTAGTGACGGAACAT | 59.360 | 40.000 | 4.86 | 0.00 | 0.00 | 2.71 |
2097 | 2275 | 5.869888 | AGAATTCTTGTAGTGACGGAACATC | 59.130 | 40.000 | 0.88 | 0.00 | 0.00 | 3.06 |
2098 | 2276 | 4.594123 | TTCTTGTAGTGACGGAACATCA | 57.406 | 40.909 | 0.00 | 0.00 | 0.00 | 3.07 |
2099 | 2277 | 4.594123 | TCTTGTAGTGACGGAACATCAA | 57.406 | 40.909 | 0.00 | 0.00 | 26.50 | 2.57 |
2100 | 2278 | 4.556233 | TCTTGTAGTGACGGAACATCAAG | 58.444 | 43.478 | 14.46 | 14.46 | 26.50 | 3.02 |
2101 | 2279 | 4.279922 | TCTTGTAGTGACGGAACATCAAGA | 59.720 | 41.667 | 16.98 | 16.98 | 26.50 | 3.02 |
2102 | 2280 | 4.801330 | TGTAGTGACGGAACATCAAGAT | 57.199 | 40.909 | 0.00 | 0.00 | 26.50 | 2.40 |
2103 | 2281 | 4.494484 | TGTAGTGACGGAACATCAAGATG | 58.506 | 43.478 | 8.45 | 8.45 | 44.15 | 2.90 |
2104 | 2282 | 2.350522 | AGTGACGGAACATCAAGATGC | 58.649 | 47.619 | 9.85 | 0.00 | 42.39 | 3.91 |
2105 | 2283 | 2.076100 | GTGACGGAACATCAAGATGCA | 58.924 | 47.619 | 9.85 | 0.00 | 42.39 | 3.96 |
2106 | 2284 | 2.679837 | GTGACGGAACATCAAGATGCAT | 59.320 | 45.455 | 9.85 | 0.00 | 42.39 | 3.96 |
2107 | 2285 | 3.127548 | GTGACGGAACATCAAGATGCATT | 59.872 | 43.478 | 9.85 | 0.00 | 42.39 | 3.56 |
2108 | 2286 | 3.758023 | TGACGGAACATCAAGATGCATTT | 59.242 | 39.130 | 9.85 | 0.00 | 42.39 | 2.32 |
2109 | 2287 | 4.100529 | GACGGAACATCAAGATGCATTTG | 58.899 | 43.478 | 9.85 | 7.88 | 42.39 | 2.32 |
2110 | 2288 | 3.507233 | ACGGAACATCAAGATGCATTTGT | 59.493 | 39.130 | 9.85 | 0.00 | 42.39 | 2.83 |
2111 | 2289 | 4.699735 | ACGGAACATCAAGATGCATTTGTA | 59.300 | 37.500 | 9.85 | 0.00 | 42.39 | 2.41 |
2112 | 2290 | 5.357878 | ACGGAACATCAAGATGCATTTGTAT | 59.642 | 36.000 | 9.85 | 1.80 | 42.39 | 2.29 |
2113 | 2291 | 5.684184 | CGGAACATCAAGATGCATTTGTATG | 59.316 | 40.000 | 9.85 | 13.57 | 42.39 | 2.39 |
2114 | 2292 | 6.458615 | CGGAACATCAAGATGCATTTGTATGA | 60.459 | 38.462 | 22.17 | 15.31 | 42.39 | 2.15 |
2115 | 2293 | 6.916387 | GGAACATCAAGATGCATTTGTATGAG | 59.084 | 38.462 | 22.17 | 12.56 | 42.39 | 2.90 |
2116 | 2294 | 7.400599 | AACATCAAGATGCATTTGTATGAGT | 57.599 | 32.000 | 22.17 | 12.92 | 42.39 | 3.41 |
2117 | 2295 | 8.510243 | AACATCAAGATGCATTTGTATGAGTA | 57.490 | 30.769 | 22.17 | 8.59 | 42.39 | 2.59 |
2118 | 2296 | 8.151141 | ACATCAAGATGCATTTGTATGAGTAG | 57.849 | 34.615 | 22.17 | 12.72 | 42.39 | 2.57 |
2119 | 2297 | 7.772292 | ACATCAAGATGCATTTGTATGAGTAGT | 59.228 | 33.333 | 22.17 | 13.08 | 42.39 | 2.73 |
2120 | 2298 | 8.618677 | CATCAAGATGCATTTGTATGAGTAGTT | 58.381 | 33.333 | 0.00 | 0.00 | 33.37 | 2.24 |
2121 | 2299 | 8.565896 | TCAAGATGCATTTGTATGAGTAGTTT | 57.434 | 30.769 | 0.00 | 0.00 | 33.37 | 2.66 |
2122 | 2300 | 9.665719 | TCAAGATGCATTTGTATGAGTAGTTTA | 57.334 | 29.630 | 0.00 | 0.00 | 33.37 | 2.01 |
2128 | 2306 | 9.448438 | TGCATTTGTATGAGTAGTTTATCTTGT | 57.552 | 29.630 | 0.00 | 0.00 | 33.37 | 3.16 |
2129 | 2307 | 9.708222 | GCATTTGTATGAGTAGTTTATCTTGTG | 57.292 | 33.333 | 0.00 | 0.00 | 33.37 | 3.33 |
2131 | 2309 | 8.786826 | TTTGTATGAGTAGTTTATCTTGTGGG | 57.213 | 34.615 | 0.00 | 0.00 | 0.00 | 4.61 |
2132 | 2310 | 6.884832 | TGTATGAGTAGTTTATCTTGTGGGG | 58.115 | 40.000 | 0.00 | 0.00 | 0.00 | 4.96 |
2133 | 2311 | 6.670464 | TGTATGAGTAGTTTATCTTGTGGGGA | 59.330 | 38.462 | 0.00 | 0.00 | 0.00 | 4.81 |
2134 | 2312 | 6.636454 | ATGAGTAGTTTATCTTGTGGGGAA | 57.364 | 37.500 | 0.00 | 0.00 | 0.00 | 3.97 |
2135 | 2313 | 6.442541 | TGAGTAGTTTATCTTGTGGGGAAA | 57.557 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
2136 | 2314 | 6.843752 | TGAGTAGTTTATCTTGTGGGGAAAA | 58.156 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2137 | 2315 | 6.940298 | TGAGTAGTTTATCTTGTGGGGAAAAG | 59.060 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
2138 | 2316 | 6.246163 | AGTAGTTTATCTTGTGGGGAAAAGG | 58.754 | 40.000 | 0.00 | 0.00 | 0.00 | 3.11 |
2139 | 2317 | 5.333566 | AGTTTATCTTGTGGGGAAAAGGA | 57.666 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
2140 | 2318 | 5.903923 | AGTTTATCTTGTGGGGAAAAGGAT | 58.096 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
2141 | 2319 | 5.716703 | AGTTTATCTTGTGGGGAAAAGGATG | 59.283 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2142 | 2320 | 5.528600 | TTATCTTGTGGGGAAAAGGATGA | 57.471 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
2143 | 2321 | 3.893753 | TCTTGTGGGGAAAAGGATGAA | 57.106 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
2144 | 2322 | 3.496331 | TCTTGTGGGGAAAAGGATGAAC | 58.504 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
2145 | 2323 | 3.117322 | TCTTGTGGGGAAAAGGATGAACA | 60.117 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
2146 | 2324 | 3.320610 | TGTGGGGAAAAGGATGAACAA | 57.679 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
2147 | 2325 | 3.230134 | TGTGGGGAAAAGGATGAACAAG | 58.770 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
2148 | 2326 | 2.562738 | GTGGGGAAAAGGATGAACAAGG | 59.437 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2149 | 2327 | 2.179427 | GGGGAAAAGGATGAACAAGGG | 58.821 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
2150 | 2328 | 2.225267 | GGGGAAAAGGATGAACAAGGGA | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2151 | 2329 | 3.506398 | GGGAAAAGGATGAACAAGGGAA | 58.494 | 45.455 | 0.00 | 0.00 | 0.00 | 3.97 |
2152 | 2330 | 3.511540 | GGGAAAAGGATGAACAAGGGAAG | 59.488 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
2153 | 2331 | 3.511540 | GGAAAAGGATGAACAAGGGAAGG | 59.488 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
2154 | 2332 | 2.222227 | AAGGATGAACAAGGGAAGGC | 57.778 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2155 | 2333 | 0.332972 | AGGATGAACAAGGGAAGGCC | 59.667 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
2156 | 2334 | 0.332972 | GGATGAACAAGGGAAGGCCT | 59.667 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
2157 | 2335 | 1.272704 | GGATGAACAAGGGAAGGCCTT | 60.273 | 52.381 | 20.65 | 20.65 | 0.00 | 4.35 |
2158 | 2336 | 2.025321 | GGATGAACAAGGGAAGGCCTTA | 60.025 | 50.000 | 20.54 | 0.00 | 0.00 | 2.69 |
2159 | 2337 | 3.373110 | GGATGAACAAGGGAAGGCCTTAT | 60.373 | 47.826 | 20.54 | 4.41 | 0.00 | 1.73 |
2160 | 2338 | 3.825908 | TGAACAAGGGAAGGCCTTATT | 57.174 | 42.857 | 20.54 | 11.12 | 0.00 | 1.40 |
2161 | 2339 | 4.126520 | TGAACAAGGGAAGGCCTTATTT | 57.873 | 40.909 | 20.54 | 10.34 | 0.00 | 1.40 |
2162 | 2340 | 3.831911 | TGAACAAGGGAAGGCCTTATTTG | 59.168 | 43.478 | 20.54 | 22.82 | 0.00 | 2.32 |
2163 | 2341 | 2.179427 | ACAAGGGAAGGCCTTATTTGC | 58.821 | 47.619 | 20.54 | 5.12 | 0.00 | 3.68 |
2164 | 2342 | 2.178580 | CAAGGGAAGGCCTTATTTGCA | 58.821 | 47.619 | 20.54 | 0.00 | 0.00 | 4.08 |
2165 | 2343 | 2.566724 | CAAGGGAAGGCCTTATTTGCAA | 59.433 | 45.455 | 20.54 | 0.00 | 0.00 | 4.08 |
2166 | 2344 | 2.901291 | AGGGAAGGCCTTATTTGCAAA | 58.099 | 42.857 | 20.54 | 15.44 | 0.00 | 3.68 |
2167 | 2345 | 3.453868 | AGGGAAGGCCTTATTTGCAAAT | 58.546 | 40.909 | 26.72 | 26.72 | 0.00 | 2.32 |
2168 | 2346 | 3.198417 | AGGGAAGGCCTTATTTGCAAATG | 59.802 | 43.478 | 30.43 | 17.22 | 0.00 | 2.32 |
2169 | 2347 | 3.055167 | GGGAAGGCCTTATTTGCAAATGT | 60.055 | 43.478 | 30.43 | 12.33 | 0.00 | 2.71 |
2170 | 2348 | 3.934579 | GGAAGGCCTTATTTGCAAATGTG | 59.065 | 43.478 | 30.43 | 21.90 | 0.00 | 3.21 |
2171 | 2349 | 3.615224 | AGGCCTTATTTGCAAATGTGG | 57.385 | 42.857 | 30.43 | 28.46 | 0.00 | 4.17 |
2172 | 2350 | 3.172339 | AGGCCTTATTTGCAAATGTGGA | 58.828 | 40.909 | 31.67 | 15.77 | 0.00 | 4.02 |
2173 | 2351 | 3.196254 | AGGCCTTATTTGCAAATGTGGAG | 59.804 | 43.478 | 31.67 | 23.26 | 0.00 | 3.86 |
2174 | 2352 | 3.195396 | GGCCTTATTTGCAAATGTGGAGA | 59.805 | 43.478 | 31.67 | 14.88 | 0.00 | 3.71 |
2175 | 2353 | 4.427312 | GCCTTATTTGCAAATGTGGAGAG | 58.573 | 43.478 | 31.67 | 20.39 | 0.00 | 3.20 |
2176 | 2354 | 4.678840 | GCCTTATTTGCAAATGTGGAGAGG | 60.679 | 45.833 | 31.67 | 25.73 | 0.00 | 3.69 |
2177 | 2355 | 4.142093 | CCTTATTTGCAAATGTGGAGAGGG | 60.142 | 45.833 | 30.43 | 17.11 | 0.00 | 4.30 |
2178 | 2356 | 1.631405 | TTTGCAAATGTGGAGAGGGG | 58.369 | 50.000 | 8.05 | 0.00 | 0.00 | 4.79 |
2179 | 2357 | 0.482446 | TTGCAAATGTGGAGAGGGGT | 59.518 | 50.000 | 0.00 | 0.00 | 0.00 | 4.95 |
2180 | 2358 | 0.251297 | TGCAAATGTGGAGAGGGGTG | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2181 | 2359 | 0.251341 | GCAAATGTGGAGAGGGGTGT | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2182 | 2360 | 1.538047 | CAAATGTGGAGAGGGGTGTG | 58.462 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2183 | 2361 | 0.405585 | AAATGTGGAGAGGGGTGTGG | 59.594 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2184 | 2362 | 1.500783 | AATGTGGAGAGGGGTGTGGG | 61.501 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2185 | 2363 | 2.529389 | GTGGAGAGGGGTGTGGGT | 60.529 | 66.667 | 0.00 | 0.00 | 0.00 | 4.51 |
2186 | 2364 | 1.229400 | GTGGAGAGGGGTGTGGGTA | 60.229 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
2187 | 2365 | 0.620700 | GTGGAGAGGGGTGTGGGTAT | 60.621 | 60.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2188 | 2366 | 1.020462 | TGGAGAGGGGTGTGGGTATA | 58.980 | 55.000 | 0.00 | 0.00 | 0.00 | 1.47 |
2189 | 2367 | 1.583611 | TGGAGAGGGGTGTGGGTATAT | 59.416 | 52.381 | 0.00 | 0.00 | 0.00 | 0.86 |
2190 | 2368 | 2.021441 | TGGAGAGGGGTGTGGGTATATT | 60.021 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2191 | 2369 | 3.053826 | GGAGAGGGGTGTGGGTATATTT | 58.946 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2192 | 2370 | 3.181443 | GGAGAGGGGTGTGGGTATATTTG | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 2.32 |
2193 | 2371 | 2.174854 | AGAGGGGTGTGGGTATATTTGC | 59.825 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
2194 | 2372 | 1.926665 | AGGGGTGTGGGTATATTTGCA | 59.073 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
2195 | 2373 | 2.313342 | AGGGGTGTGGGTATATTTGCAA | 59.687 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
2196 | 2374 | 3.100671 | GGGGTGTGGGTATATTTGCAAA | 58.899 | 45.455 | 15.44 | 15.44 | 0.00 | 3.68 |
2197 | 2375 | 3.515901 | GGGGTGTGGGTATATTTGCAAAA | 59.484 | 43.478 | 17.19 | 6.25 | 0.00 | 2.44 |
2198 | 2376 | 4.163268 | GGGGTGTGGGTATATTTGCAAAAT | 59.837 | 41.667 | 17.19 | 12.93 | 0.00 | 1.82 |
2199 | 2377 | 5.338789 | GGGGTGTGGGTATATTTGCAAAATT | 60.339 | 40.000 | 17.19 | 9.10 | 0.00 | 1.82 |
2200 | 2378 | 5.584251 | GGGTGTGGGTATATTTGCAAAATTG | 59.416 | 40.000 | 17.19 | 0.00 | 0.00 | 2.32 |
2201 | 2379 | 6.169800 | GGTGTGGGTATATTTGCAAAATTGT | 58.830 | 36.000 | 17.19 | 1.72 | 0.00 | 2.71 |
2202 | 2380 | 6.312672 | GGTGTGGGTATATTTGCAAAATTGTC | 59.687 | 38.462 | 17.19 | 6.33 | 0.00 | 3.18 |
2203 | 2381 | 6.034470 | GTGTGGGTATATTTGCAAAATTGTCG | 59.966 | 38.462 | 17.19 | 0.00 | 0.00 | 4.35 |
2204 | 2382 | 6.096695 | GTGGGTATATTTGCAAAATTGTCGT | 58.903 | 36.000 | 17.19 | 0.00 | 0.00 | 4.34 |
2205 | 2383 | 7.094334 | TGTGGGTATATTTGCAAAATTGTCGTA | 60.094 | 33.333 | 17.19 | 2.28 | 0.00 | 3.43 |
2206 | 2384 | 7.431084 | GTGGGTATATTTGCAAAATTGTCGTAG | 59.569 | 37.037 | 17.19 | 0.00 | 0.00 | 3.51 |
2207 | 2385 | 7.121463 | TGGGTATATTTGCAAAATTGTCGTAGT | 59.879 | 33.333 | 17.19 | 0.00 | 0.00 | 2.73 |
2208 | 2386 | 7.971722 | GGGTATATTTGCAAAATTGTCGTAGTT | 59.028 | 33.333 | 17.19 | 0.00 | 0.00 | 2.24 |
2209 | 2387 | 9.349145 | GGTATATTTGCAAAATTGTCGTAGTTT | 57.651 | 29.630 | 17.19 | 0.00 | 0.00 | 2.66 |
2211 | 2389 | 6.763303 | ATTTGCAAAATTGTCGTAGTTTCC | 57.237 | 33.333 | 17.19 | 0.00 | 0.00 | 3.13 |
2212 | 2390 | 5.508200 | TTGCAAAATTGTCGTAGTTTCCT | 57.492 | 34.783 | 0.00 | 0.00 | 0.00 | 3.36 |
2213 | 2391 | 5.508200 | TGCAAAATTGTCGTAGTTTCCTT | 57.492 | 34.783 | 0.00 | 0.00 | 0.00 | 3.36 |
2214 | 2392 | 5.516090 | TGCAAAATTGTCGTAGTTTCCTTC | 58.484 | 37.500 | 0.00 | 0.00 | 0.00 | 3.46 |
2215 | 2393 | 4.915667 | GCAAAATTGTCGTAGTTTCCTTCC | 59.084 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
2216 | 2394 | 5.278315 | GCAAAATTGTCGTAGTTTCCTTCCT | 60.278 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2217 | 2395 | 6.072893 | GCAAAATTGTCGTAGTTTCCTTCCTA | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 2.94 |
2218 | 2396 | 7.361799 | GCAAAATTGTCGTAGTTTCCTTCCTAT | 60.362 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2219 | 2397 | 7.845066 | AAATTGTCGTAGTTTCCTTCCTATC | 57.155 | 36.000 | 0.00 | 0.00 | 0.00 | 2.08 |
2220 | 2398 | 4.996788 | TGTCGTAGTTTCCTTCCTATCC | 57.003 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
2221 | 2399 | 3.379372 | TGTCGTAGTTTCCTTCCTATCCG | 59.621 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
2222 | 2400 | 3.379688 | GTCGTAGTTTCCTTCCTATCCGT | 59.620 | 47.826 | 0.00 | 0.00 | 0.00 | 4.69 |
2223 | 2401 | 3.629398 | TCGTAGTTTCCTTCCTATCCGTC | 59.371 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
2224 | 2402 | 3.379372 | CGTAGTTTCCTTCCTATCCGTCA | 59.621 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
2225 | 2403 | 4.497674 | CGTAGTTTCCTTCCTATCCGTCAG | 60.498 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2226 | 2404 | 3.709587 | AGTTTCCTTCCTATCCGTCAGA | 58.290 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
2227 | 2405 | 4.290942 | AGTTTCCTTCCTATCCGTCAGAT | 58.709 | 43.478 | 0.00 | 0.00 | 39.15 | 2.90 |
2228 | 2406 | 5.455872 | AGTTTCCTTCCTATCCGTCAGATA | 58.544 | 41.667 | 0.00 | 0.00 | 36.33 | 1.98 |
2229 | 2407 | 6.078664 | AGTTTCCTTCCTATCCGTCAGATAT | 58.921 | 40.000 | 0.00 | 0.00 | 36.84 | 1.63 |
2230 | 2408 | 7.239438 | AGTTTCCTTCCTATCCGTCAGATATA | 58.761 | 38.462 | 0.00 | 0.00 | 36.84 | 0.86 |
2231 | 2409 | 7.394923 | AGTTTCCTTCCTATCCGTCAGATATAG | 59.605 | 40.741 | 0.00 | 0.00 | 36.84 | 1.31 |
2232 | 2410 | 6.638021 | TCCTTCCTATCCGTCAGATATAGA | 57.362 | 41.667 | 0.00 | 0.00 | 36.84 | 1.98 |
2233 | 2411 | 7.214460 | TCCTTCCTATCCGTCAGATATAGAT | 57.786 | 40.000 | 0.00 | 0.00 | 36.84 | 1.98 |
2234 | 2412 | 7.284074 | TCCTTCCTATCCGTCAGATATAGATC | 58.716 | 42.308 | 0.00 | 0.00 | 36.84 | 2.75 |
2235 | 2413 | 6.203915 | CCTTCCTATCCGTCAGATATAGATCG | 59.796 | 46.154 | 0.00 | 0.00 | 36.84 | 3.69 |
2236 | 2414 | 5.612351 | TCCTATCCGTCAGATATAGATCGG | 58.388 | 45.833 | 0.00 | 0.00 | 36.84 | 4.18 |
2241 | 2419 | 3.408288 | GTCAGATATAGATCGGACGGC | 57.592 | 52.381 | 13.57 | 0.00 | 44.04 | 5.68 |
2242 | 2420 | 2.097791 | GTCAGATATAGATCGGACGGCC | 59.902 | 54.545 | 13.57 | 0.00 | 44.04 | 6.13 |
2243 | 2421 | 2.026169 | TCAGATATAGATCGGACGGCCT | 60.026 | 50.000 | 5.33 | 0.00 | 37.15 | 5.19 |
2244 | 2422 | 3.199289 | TCAGATATAGATCGGACGGCCTA | 59.801 | 47.826 | 5.33 | 0.00 | 37.15 | 3.93 |
2245 | 2423 | 4.138290 | CAGATATAGATCGGACGGCCTAT | 58.862 | 47.826 | 5.33 | 0.00 | 37.15 | 2.57 |
2246 | 2424 | 5.071384 | TCAGATATAGATCGGACGGCCTATA | 59.929 | 44.000 | 5.33 | 0.25 | 37.15 | 1.31 |
2247 | 2425 | 5.941058 | CAGATATAGATCGGACGGCCTATAT | 59.059 | 44.000 | 5.33 | 6.08 | 37.45 | 0.86 |
2248 | 2426 | 6.431543 | CAGATATAGATCGGACGGCCTATATT | 59.568 | 42.308 | 5.33 | 0.00 | 35.87 | 1.28 |
2249 | 2427 | 4.920640 | ATAGATCGGACGGCCTATATTG | 57.079 | 45.455 | 5.33 | 0.00 | 0.00 | 1.90 |
2250 | 2428 | 1.204941 | AGATCGGACGGCCTATATTGC | 59.795 | 52.381 | 5.33 | 0.00 | 0.00 | 3.56 |
2251 | 2429 | 0.973632 | ATCGGACGGCCTATATTGCA | 59.026 | 50.000 | 5.33 | 0.00 | 0.00 | 4.08 |
2252 | 2430 | 0.317160 | TCGGACGGCCTATATTGCAG | 59.683 | 55.000 | 5.33 | 0.00 | 0.00 | 4.41 |
2253 | 2431 | 0.670546 | CGGACGGCCTATATTGCAGG | 60.671 | 60.000 | 5.33 | 0.00 | 36.16 | 4.85 |
2254 | 2432 | 0.685097 | GGACGGCCTATATTGCAGGA | 59.315 | 55.000 | 0.00 | 0.00 | 34.91 | 3.86 |
2255 | 2433 | 1.279271 | GGACGGCCTATATTGCAGGAT | 59.721 | 52.381 | 0.00 | 0.00 | 34.91 | 3.24 |
2256 | 2434 | 2.350522 | GACGGCCTATATTGCAGGATG | 58.649 | 52.381 | 0.00 | 0.00 | 34.91 | 3.51 |
2257 | 2435 | 1.003580 | ACGGCCTATATTGCAGGATGG | 59.996 | 52.381 | 0.00 | 0.00 | 34.91 | 3.51 |
2258 | 2436 | 1.467920 | GGCCTATATTGCAGGATGGC | 58.532 | 55.000 | 0.00 | 10.13 | 34.91 | 4.40 |
2259 | 2437 | 1.272092 | GGCCTATATTGCAGGATGGCA | 60.272 | 52.381 | 17.22 | 0.00 | 43.19 | 4.92 |
2260 | 2438 | 2.089980 | GCCTATATTGCAGGATGGCAG | 58.910 | 52.381 | 12.68 | 0.00 | 45.88 | 4.85 |
2261 | 2439 | 2.719739 | CCTATATTGCAGGATGGCAGG | 58.280 | 52.381 | 0.00 | 0.00 | 45.88 | 4.85 |
2262 | 2440 | 2.089980 | CTATATTGCAGGATGGCAGGC | 58.910 | 52.381 | 0.00 | 0.00 | 45.88 | 4.85 |
2263 | 2441 | 0.186630 | ATATTGCAGGATGGCAGGCA | 59.813 | 50.000 | 0.00 | 0.00 | 45.88 | 4.75 |
2264 | 2442 | 0.752743 | TATTGCAGGATGGCAGGCAC | 60.753 | 55.000 | 0.00 | 0.00 | 45.88 | 5.01 |
2265 | 2443 | 2.791613 | ATTGCAGGATGGCAGGCACA | 62.792 | 55.000 | 0.00 | 0.00 | 45.88 | 4.57 |
2266 | 2444 | 3.446570 | GCAGGATGGCAGGCACAC | 61.447 | 66.667 | 0.00 | 0.00 | 35.86 | 3.82 |
2267 | 2445 | 3.129502 | CAGGATGGCAGGCACACG | 61.130 | 66.667 | 0.00 | 0.00 | 0.00 | 4.49 |
2268 | 2446 | 3.321648 | AGGATGGCAGGCACACGA | 61.322 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
2269 | 2447 | 2.124570 | GGATGGCAGGCACACGAT | 60.125 | 61.111 | 0.00 | 0.00 | 0.00 | 3.73 |
2270 | 2448 | 2.182842 | GGATGGCAGGCACACGATC | 61.183 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
2271 | 2449 | 1.450134 | GATGGCAGGCACACGATCA | 60.450 | 57.895 | 0.00 | 0.00 | 0.00 | 2.92 |
2272 | 2450 | 0.816825 | GATGGCAGGCACACGATCAT | 60.817 | 55.000 | 0.00 | 0.00 | 0.00 | 2.45 |
2273 | 2451 | 0.816825 | ATGGCAGGCACACGATCATC | 60.817 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2274 | 2452 | 1.153289 | GGCAGGCACACGATCATCT | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 2.90 |
2275 | 2453 | 1.156645 | GGCAGGCACACGATCATCTC | 61.157 | 60.000 | 0.00 | 0.00 | 0.00 | 2.75 |
2276 | 2454 | 1.156645 | GCAGGCACACGATCATCTCC | 61.157 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2277 | 2455 | 0.531532 | CAGGCACACGATCATCTCCC | 60.532 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2278 | 2456 | 0.977627 | AGGCACACGATCATCTCCCA | 60.978 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2279 | 2457 | 0.811616 | GGCACACGATCATCTCCCAC | 60.812 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2280 | 2458 | 0.108186 | GCACACGATCATCTCCCACA | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2281 | 2459 | 1.675714 | GCACACGATCATCTCCCACAA | 60.676 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
2282 | 2460 | 2.910199 | CACACGATCATCTCCCACAAT | 58.090 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
2283 | 2461 | 2.610833 | CACACGATCATCTCCCACAATG | 59.389 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2284 | 2462 | 1.600957 | CACGATCATCTCCCACAATGC | 59.399 | 52.381 | 0.00 | 0.00 | 0.00 | 3.56 |
2285 | 2463 | 1.487976 | ACGATCATCTCCCACAATGCT | 59.512 | 47.619 | 0.00 | 0.00 | 0.00 | 3.79 |
2286 | 2464 | 2.092753 | ACGATCATCTCCCACAATGCTT | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
2287 | 2465 | 3.134623 | ACGATCATCTCCCACAATGCTTA | 59.865 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
2288 | 2466 | 4.202398 | ACGATCATCTCCCACAATGCTTAT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
2289 | 2467 | 4.758674 | CGATCATCTCCCACAATGCTTATT | 59.241 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2290 | 2468 | 5.934043 | CGATCATCTCCCACAATGCTTATTA | 59.066 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
2291 | 2469 | 6.596888 | CGATCATCTCCCACAATGCTTATTAT | 59.403 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
2292 | 2470 | 7.765819 | CGATCATCTCCCACAATGCTTATTATA | 59.234 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
2293 | 2471 | 9.453572 | GATCATCTCCCACAATGCTTATTATAA | 57.546 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
2294 | 2472 | 8.853077 | TCATCTCCCACAATGCTTATTATAAG | 57.147 | 34.615 | 7.56 | 7.56 | 0.00 | 1.73 |
2295 | 2473 | 8.659527 | TCATCTCCCACAATGCTTATTATAAGA | 58.340 | 33.333 | 15.40 | 2.11 | 0.00 | 2.10 |
2296 | 2474 | 8.944029 | CATCTCCCACAATGCTTATTATAAGAG | 58.056 | 37.037 | 15.40 | 4.83 | 0.00 | 2.85 |
2297 | 2475 | 8.034313 | TCTCCCACAATGCTTATTATAAGAGT | 57.966 | 34.615 | 15.40 | 5.37 | 0.00 | 3.24 |
2298 | 2476 | 9.154632 | TCTCCCACAATGCTTATTATAAGAGTA | 57.845 | 33.333 | 15.40 | 2.07 | 0.00 | 2.59 |
2299 | 2477 | 9.429359 | CTCCCACAATGCTTATTATAAGAGTAG | 57.571 | 37.037 | 15.40 | 5.13 | 0.00 | 2.57 |
2300 | 2478 | 8.375506 | TCCCACAATGCTTATTATAAGAGTAGG | 58.624 | 37.037 | 15.40 | 9.65 | 0.00 | 3.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
287 | 295 | 4.229096 | ACATCGTTAAACAAGCAGCAATG | 58.771 | 39.130 | 0.00 | 0.00 | 0.00 | 2.82 |
288 | 296 | 4.503741 | ACATCGTTAAACAAGCAGCAAT | 57.496 | 36.364 | 0.00 | 0.00 | 0.00 | 3.56 |
289 | 297 | 3.980646 | ACATCGTTAAACAAGCAGCAA | 57.019 | 38.095 | 0.00 | 0.00 | 0.00 | 3.91 |
290 | 298 | 3.313803 | TCAACATCGTTAAACAAGCAGCA | 59.686 | 39.130 | 0.00 | 0.00 | 0.00 | 4.41 |
293 | 301 | 5.038033 | GGTTTCAACATCGTTAAACAAGCA | 58.962 | 37.500 | 0.00 | 0.00 | 34.30 | 3.91 |
310 | 359 | 0.537143 | AGCAAGGCATGACGGTTTCA | 60.537 | 50.000 | 0.00 | 0.00 | 39.11 | 2.69 |
456 | 505 | 1.474330 | TGCTAGCCGTCAGATCTCAA | 58.526 | 50.000 | 13.29 | 0.00 | 0.00 | 3.02 |
565 | 614 | 1.302752 | TGCAGCAGCGGAGATTTGT | 60.303 | 52.632 | 0.00 | 0.00 | 46.23 | 2.83 |
738 | 812 | 2.609610 | GTGGGAGTGTAGGGGGCA | 60.610 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
912 | 987 | 1.489560 | CGTTGGGGAGAGAAAGGGGT | 61.490 | 60.000 | 0.00 | 0.00 | 0.00 | 4.95 |
1140 | 1220 | 3.359523 | CCGACGGTGAGGACGACA | 61.360 | 66.667 | 5.48 | 0.00 | 34.93 | 4.35 |
1229 | 1309 | 4.452455 | ACAAAAGATAAGACAGCCTCAACG | 59.548 | 41.667 | 0.00 | 0.00 | 0.00 | 4.10 |
1258 | 1341 | 1.377594 | ATGCTCGACATTGCCTGCA | 60.378 | 52.632 | 0.00 | 0.00 | 34.40 | 4.41 |
1312 | 1400 | 2.448582 | ATCCCCGCCGGCTTCATAA | 61.449 | 57.895 | 26.68 | 5.15 | 0.00 | 1.90 |
1313 | 1401 | 2.847234 | ATCCCCGCCGGCTTCATA | 60.847 | 61.111 | 26.68 | 6.33 | 0.00 | 2.15 |
1799 | 1976 | 3.636764 | CCCATGAAGTAATAGGCCCAAAC | 59.363 | 47.826 | 0.00 | 0.00 | 0.00 | 2.93 |
1800 | 1977 | 3.909732 | CCCATGAAGTAATAGGCCCAAA | 58.090 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
1808 | 1985 | 2.930950 | GTGGCAGCCCATGAAGTAATA | 58.069 | 47.619 | 9.64 | 0.00 | 44.51 | 0.98 |
1909 | 2087 | 3.559811 | TCATGGACCATGACAGTTCTTGG | 60.560 | 47.826 | 29.67 | 3.56 | 44.60 | 3.61 |
1949 | 2127 | 3.138798 | CAGCTGCCCACTCCATGC | 61.139 | 66.667 | 0.00 | 0.00 | 0.00 | 4.06 |
2059 | 2237 | 9.166173 | CTACAAGAATTCTGTTAATCCATGACA | 57.834 | 33.333 | 9.17 | 0.00 | 0.00 | 3.58 |
2091 | 2269 | 7.478322 | ACTCATACAAATGCATCTTGATGTTC | 58.522 | 34.615 | 20.96 | 0.00 | 32.76 | 3.18 |
2092 | 2270 | 7.400599 | ACTCATACAAATGCATCTTGATGTT | 57.599 | 32.000 | 20.96 | 1.04 | 32.76 | 2.71 |
2093 | 2271 | 7.772292 | ACTACTCATACAAATGCATCTTGATGT | 59.228 | 33.333 | 20.96 | 14.21 | 32.76 | 3.06 |
2094 | 2272 | 8.151141 | ACTACTCATACAAATGCATCTTGATG | 57.849 | 34.615 | 20.96 | 18.39 | 32.76 | 3.07 |
2095 | 2273 | 8.743085 | AACTACTCATACAAATGCATCTTGAT | 57.257 | 30.769 | 20.96 | 11.48 | 32.76 | 2.57 |
2096 | 2274 | 8.565896 | AAACTACTCATACAAATGCATCTTGA | 57.434 | 30.769 | 20.96 | 10.81 | 32.76 | 3.02 |
2102 | 2280 | 9.448438 | ACAAGATAAACTACTCATACAAATGCA | 57.552 | 29.630 | 0.00 | 0.00 | 32.76 | 3.96 |
2103 | 2281 | 9.708222 | CACAAGATAAACTACTCATACAAATGC | 57.292 | 33.333 | 0.00 | 0.00 | 32.76 | 3.56 |
2105 | 2283 | 9.396022 | CCCACAAGATAAACTACTCATACAAAT | 57.604 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2106 | 2284 | 7.827236 | CCCCACAAGATAAACTACTCATACAAA | 59.173 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
2107 | 2285 | 7.181305 | TCCCCACAAGATAAACTACTCATACAA | 59.819 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
2108 | 2286 | 6.670464 | TCCCCACAAGATAAACTACTCATACA | 59.330 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
2109 | 2287 | 7.120923 | TCCCCACAAGATAAACTACTCATAC | 57.879 | 40.000 | 0.00 | 0.00 | 0.00 | 2.39 |
2110 | 2288 | 7.743116 | TTCCCCACAAGATAAACTACTCATA | 57.257 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
2111 | 2289 | 6.636454 | TTCCCCACAAGATAAACTACTCAT | 57.364 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
2112 | 2290 | 6.442541 | TTTCCCCACAAGATAAACTACTCA | 57.557 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
2113 | 2291 | 6.374613 | CCTTTTCCCCACAAGATAAACTACTC | 59.625 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
2114 | 2292 | 6.045106 | TCCTTTTCCCCACAAGATAAACTACT | 59.955 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
2115 | 2293 | 6.243148 | TCCTTTTCCCCACAAGATAAACTAC | 58.757 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2116 | 2294 | 6.457159 | TCCTTTTCCCCACAAGATAAACTA | 57.543 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2117 | 2295 | 5.333566 | TCCTTTTCCCCACAAGATAAACT | 57.666 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
2118 | 2296 | 5.714806 | TCATCCTTTTCCCCACAAGATAAAC | 59.285 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2119 | 2297 | 5.898120 | TCATCCTTTTCCCCACAAGATAAA | 58.102 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2120 | 2298 | 5.528600 | TCATCCTTTTCCCCACAAGATAA | 57.471 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
2121 | 2299 | 5.222233 | TGTTCATCCTTTTCCCCACAAGATA | 60.222 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2122 | 2300 | 4.089361 | GTTCATCCTTTTCCCCACAAGAT | 58.911 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
2123 | 2301 | 3.117322 | TGTTCATCCTTTTCCCCACAAGA | 60.117 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
2124 | 2302 | 3.230134 | TGTTCATCCTTTTCCCCACAAG | 58.770 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
2125 | 2303 | 3.320610 | TGTTCATCCTTTTCCCCACAA | 57.679 | 42.857 | 0.00 | 0.00 | 0.00 | 3.33 |
2126 | 2304 | 3.230134 | CTTGTTCATCCTTTTCCCCACA | 58.770 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
2127 | 2305 | 2.562738 | CCTTGTTCATCCTTTTCCCCAC | 59.437 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2128 | 2306 | 2.492567 | CCCTTGTTCATCCTTTTCCCCA | 60.493 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
2129 | 2307 | 2.179427 | CCCTTGTTCATCCTTTTCCCC | 58.821 | 52.381 | 0.00 | 0.00 | 0.00 | 4.81 |
2130 | 2308 | 3.169512 | TCCCTTGTTCATCCTTTTCCC | 57.830 | 47.619 | 0.00 | 0.00 | 0.00 | 3.97 |
2131 | 2309 | 3.511540 | CCTTCCCTTGTTCATCCTTTTCC | 59.488 | 47.826 | 0.00 | 0.00 | 0.00 | 3.13 |
2132 | 2310 | 3.056536 | GCCTTCCCTTGTTCATCCTTTTC | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
2133 | 2311 | 2.899900 | GCCTTCCCTTGTTCATCCTTTT | 59.100 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
2134 | 2312 | 2.529632 | GCCTTCCCTTGTTCATCCTTT | 58.470 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
2135 | 2313 | 1.272704 | GGCCTTCCCTTGTTCATCCTT | 60.273 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
2136 | 2314 | 0.332972 | GGCCTTCCCTTGTTCATCCT | 59.667 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2137 | 2315 | 0.332972 | AGGCCTTCCCTTGTTCATCC | 59.667 | 55.000 | 0.00 | 0.00 | 43.06 | 3.51 |
2138 | 2316 | 3.987594 | AGGCCTTCCCTTGTTCATC | 57.012 | 52.632 | 0.00 | 0.00 | 43.06 | 2.92 |
2147 | 2325 | 3.055167 | ACATTTGCAAATAAGGCCTTCCC | 60.055 | 43.478 | 24.49 | 7.52 | 0.00 | 3.97 |
2148 | 2326 | 3.934579 | CACATTTGCAAATAAGGCCTTCC | 59.065 | 43.478 | 24.49 | 7.15 | 0.00 | 3.46 |
2149 | 2327 | 3.934579 | CCACATTTGCAAATAAGGCCTTC | 59.065 | 43.478 | 24.49 | 7.84 | 0.00 | 3.46 |
2150 | 2328 | 3.582208 | TCCACATTTGCAAATAAGGCCTT | 59.418 | 39.130 | 23.69 | 24.18 | 0.00 | 4.35 |
2151 | 2329 | 3.172339 | TCCACATTTGCAAATAAGGCCT | 58.828 | 40.909 | 23.69 | 0.00 | 0.00 | 5.19 |
2152 | 2330 | 3.195396 | TCTCCACATTTGCAAATAAGGCC | 59.805 | 43.478 | 23.69 | 0.00 | 0.00 | 5.19 |
2153 | 2331 | 4.427312 | CTCTCCACATTTGCAAATAAGGC | 58.573 | 43.478 | 23.69 | 0.00 | 0.00 | 4.35 |
2154 | 2332 | 4.142093 | CCCTCTCCACATTTGCAAATAAGG | 60.142 | 45.833 | 23.69 | 24.65 | 0.00 | 2.69 |
2155 | 2333 | 4.142093 | CCCCTCTCCACATTTGCAAATAAG | 60.142 | 45.833 | 23.69 | 17.76 | 0.00 | 1.73 |
2156 | 2334 | 3.768757 | CCCCTCTCCACATTTGCAAATAA | 59.231 | 43.478 | 23.69 | 9.41 | 0.00 | 1.40 |
2157 | 2335 | 3.245586 | ACCCCTCTCCACATTTGCAAATA | 60.246 | 43.478 | 23.69 | 8.18 | 0.00 | 1.40 |
2158 | 2336 | 2.181975 | CCCCTCTCCACATTTGCAAAT | 58.818 | 47.619 | 18.99 | 18.99 | 0.00 | 2.32 |
2159 | 2337 | 1.133199 | ACCCCTCTCCACATTTGCAAA | 60.133 | 47.619 | 15.44 | 15.44 | 0.00 | 3.68 |
2160 | 2338 | 0.482446 | ACCCCTCTCCACATTTGCAA | 59.518 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2161 | 2339 | 0.251297 | CACCCCTCTCCACATTTGCA | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2162 | 2340 | 0.251341 | ACACCCCTCTCCACATTTGC | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.68 |
2163 | 2341 | 1.538047 | CACACCCCTCTCCACATTTG | 58.462 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2164 | 2342 | 0.405585 | CCACACCCCTCTCCACATTT | 59.594 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2165 | 2343 | 1.500783 | CCCACACCCCTCTCCACATT | 61.501 | 60.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2166 | 2344 | 1.925455 | CCCACACCCCTCTCCACAT | 60.925 | 63.158 | 0.00 | 0.00 | 0.00 | 3.21 |
2167 | 2345 | 2.038545 | TACCCACACCCCTCTCCACA | 62.039 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2168 | 2346 | 0.620700 | ATACCCACACCCCTCTCCAC | 60.621 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2169 | 2347 | 1.020462 | TATACCCACACCCCTCTCCA | 58.980 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2170 | 2348 | 2.417719 | ATATACCCACACCCCTCTCC | 57.582 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2171 | 2349 | 3.747708 | GCAAATATACCCACACCCCTCTC | 60.748 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
2172 | 2350 | 2.174854 | GCAAATATACCCACACCCCTCT | 59.825 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2173 | 2351 | 2.092103 | TGCAAATATACCCACACCCCTC | 60.092 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2174 | 2352 | 1.926665 | TGCAAATATACCCACACCCCT | 59.073 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
2175 | 2353 | 2.445682 | TGCAAATATACCCACACCCC | 57.554 | 50.000 | 0.00 | 0.00 | 0.00 | 4.95 |
2176 | 2354 | 4.810191 | TTTTGCAAATATACCCACACCC | 57.190 | 40.909 | 13.65 | 0.00 | 0.00 | 4.61 |
2177 | 2355 | 6.169800 | ACAATTTTGCAAATATACCCACACC | 58.830 | 36.000 | 13.65 | 0.00 | 0.00 | 4.16 |
2178 | 2356 | 6.034470 | CGACAATTTTGCAAATATACCCACAC | 59.966 | 38.462 | 13.65 | 0.00 | 0.00 | 3.82 |
2179 | 2357 | 6.096036 | CGACAATTTTGCAAATATACCCACA | 58.904 | 36.000 | 13.65 | 0.00 | 0.00 | 4.17 |
2180 | 2358 | 6.096695 | ACGACAATTTTGCAAATATACCCAC | 58.903 | 36.000 | 13.65 | 0.19 | 0.00 | 4.61 |
2181 | 2359 | 6.274157 | ACGACAATTTTGCAAATATACCCA | 57.726 | 33.333 | 13.65 | 0.00 | 0.00 | 4.51 |
2182 | 2360 | 7.477494 | ACTACGACAATTTTGCAAATATACCC | 58.523 | 34.615 | 13.65 | 0.77 | 0.00 | 3.69 |
2183 | 2361 | 8.905103 | AACTACGACAATTTTGCAAATATACC | 57.095 | 30.769 | 13.65 | 2.33 | 0.00 | 2.73 |
2185 | 2363 | 9.562583 | GGAAACTACGACAATTTTGCAAATATA | 57.437 | 29.630 | 13.65 | 0.00 | 0.00 | 0.86 |
2186 | 2364 | 8.303876 | AGGAAACTACGACAATTTTGCAAATAT | 58.696 | 29.630 | 13.65 | 6.85 | 40.61 | 1.28 |
2187 | 2365 | 7.653647 | AGGAAACTACGACAATTTTGCAAATA | 58.346 | 30.769 | 13.65 | 4.65 | 40.61 | 1.40 |
2188 | 2366 | 6.512297 | AGGAAACTACGACAATTTTGCAAAT | 58.488 | 32.000 | 13.65 | 0.00 | 40.61 | 2.32 |
2189 | 2367 | 5.897050 | AGGAAACTACGACAATTTTGCAAA | 58.103 | 33.333 | 8.05 | 8.05 | 40.61 | 3.68 |
2190 | 2368 | 5.508200 | AGGAAACTACGACAATTTTGCAA | 57.492 | 34.783 | 0.00 | 0.00 | 40.61 | 4.08 |
2191 | 2369 | 5.506649 | GGAAGGAAACTACGACAATTTTGCA | 60.507 | 40.000 | 0.00 | 0.00 | 42.68 | 4.08 |
2192 | 2370 | 4.915667 | GGAAGGAAACTACGACAATTTTGC | 59.084 | 41.667 | 0.00 | 0.00 | 42.68 | 3.68 |
2193 | 2371 | 6.313744 | AGGAAGGAAACTACGACAATTTTG | 57.686 | 37.500 | 0.00 | 0.00 | 42.68 | 2.44 |
2194 | 2372 | 7.336176 | GGATAGGAAGGAAACTACGACAATTTT | 59.664 | 37.037 | 0.00 | 0.00 | 42.68 | 1.82 |
2195 | 2373 | 6.822170 | GGATAGGAAGGAAACTACGACAATTT | 59.178 | 38.462 | 0.00 | 0.00 | 42.68 | 1.82 |
2196 | 2374 | 6.346896 | GGATAGGAAGGAAACTACGACAATT | 58.653 | 40.000 | 0.00 | 0.00 | 42.68 | 2.32 |
2197 | 2375 | 5.451520 | CGGATAGGAAGGAAACTACGACAAT | 60.452 | 44.000 | 0.00 | 0.00 | 42.68 | 2.71 |
2198 | 2376 | 4.142315 | CGGATAGGAAGGAAACTACGACAA | 60.142 | 45.833 | 0.00 | 0.00 | 42.68 | 3.18 |
2199 | 2377 | 3.379372 | CGGATAGGAAGGAAACTACGACA | 59.621 | 47.826 | 0.00 | 0.00 | 42.68 | 4.35 |
2200 | 2378 | 3.379688 | ACGGATAGGAAGGAAACTACGAC | 59.620 | 47.826 | 0.00 | 0.00 | 42.68 | 4.34 |
2201 | 2379 | 3.624777 | ACGGATAGGAAGGAAACTACGA | 58.375 | 45.455 | 0.00 | 0.00 | 42.68 | 3.43 |
2202 | 2380 | 3.379372 | TGACGGATAGGAAGGAAACTACG | 59.621 | 47.826 | 0.00 | 0.00 | 42.68 | 3.51 |
2203 | 2381 | 4.643784 | TCTGACGGATAGGAAGGAAACTAC | 59.356 | 45.833 | 0.00 | 0.00 | 42.68 | 2.73 |
2204 | 2382 | 4.863548 | TCTGACGGATAGGAAGGAAACTA | 58.136 | 43.478 | 0.00 | 0.00 | 42.68 | 2.24 |
2205 | 2383 | 4.290942 | ATCTGACGGATAGGAAGGAAACT | 58.709 | 43.478 | 0.00 | 0.00 | 35.69 | 2.66 |
2206 | 2384 | 4.674281 | ATCTGACGGATAGGAAGGAAAC | 57.326 | 45.455 | 0.00 | 0.00 | 32.04 | 2.78 |
2207 | 2385 | 7.467650 | TCTATATCTGACGGATAGGAAGGAAA | 58.532 | 38.462 | 9.78 | 0.00 | 39.89 | 3.13 |
2208 | 2386 | 7.029053 | TCTATATCTGACGGATAGGAAGGAA | 57.971 | 40.000 | 9.78 | 0.00 | 39.89 | 3.36 |
2209 | 2387 | 6.638021 | TCTATATCTGACGGATAGGAAGGA | 57.362 | 41.667 | 9.78 | 1.72 | 39.89 | 3.36 |
2210 | 2388 | 6.203915 | CGATCTATATCTGACGGATAGGAAGG | 59.796 | 46.154 | 9.78 | 4.24 | 39.89 | 3.46 |
2211 | 2389 | 6.203915 | CCGATCTATATCTGACGGATAGGAAG | 59.796 | 46.154 | 9.78 | 7.25 | 42.40 | 3.46 |
2212 | 2390 | 6.056236 | CCGATCTATATCTGACGGATAGGAA | 58.944 | 44.000 | 9.78 | 0.00 | 42.40 | 3.36 |
2213 | 2391 | 5.365895 | TCCGATCTATATCTGACGGATAGGA | 59.634 | 44.000 | 9.78 | 10.10 | 43.30 | 2.94 |
2214 | 2392 | 5.612351 | TCCGATCTATATCTGACGGATAGG | 58.388 | 45.833 | 9.78 | 4.78 | 43.30 | 2.57 |
2221 | 2399 | 2.097791 | GGCCGTCCGATCTATATCTGAC | 59.902 | 54.545 | 0.00 | 3.47 | 40.83 | 3.51 |
2222 | 2400 | 2.026169 | AGGCCGTCCGATCTATATCTGA | 60.026 | 50.000 | 0.00 | 0.00 | 37.47 | 3.27 |
2223 | 2401 | 2.370349 | AGGCCGTCCGATCTATATCTG | 58.630 | 52.381 | 0.00 | 0.00 | 37.47 | 2.90 |
2224 | 2402 | 2.810870 | AGGCCGTCCGATCTATATCT | 57.189 | 50.000 | 0.00 | 0.00 | 37.47 | 1.98 |
2225 | 2403 | 6.613233 | CAATATAGGCCGTCCGATCTATATC | 58.387 | 44.000 | 15.29 | 0.00 | 35.53 | 1.63 |
2226 | 2404 | 5.047943 | GCAATATAGGCCGTCCGATCTATAT | 60.048 | 44.000 | 0.00 | 11.98 | 37.13 | 0.86 |
2227 | 2405 | 4.277672 | GCAATATAGGCCGTCCGATCTATA | 59.722 | 45.833 | 0.00 | 9.58 | 37.47 | 1.31 |
2228 | 2406 | 3.068307 | GCAATATAGGCCGTCCGATCTAT | 59.932 | 47.826 | 0.00 | 0.00 | 37.47 | 1.98 |
2229 | 2407 | 2.426024 | GCAATATAGGCCGTCCGATCTA | 59.574 | 50.000 | 0.00 | 0.00 | 37.47 | 1.98 |
2230 | 2408 | 1.204941 | GCAATATAGGCCGTCCGATCT | 59.795 | 52.381 | 0.00 | 0.00 | 37.47 | 2.75 |
2231 | 2409 | 1.067142 | TGCAATATAGGCCGTCCGATC | 60.067 | 52.381 | 0.00 | 0.00 | 37.47 | 3.69 |
2232 | 2410 | 0.973632 | TGCAATATAGGCCGTCCGAT | 59.026 | 50.000 | 0.00 | 0.00 | 37.47 | 4.18 |
2233 | 2411 | 0.317160 | CTGCAATATAGGCCGTCCGA | 59.683 | 55.000 | 0.00 | 0.00 | 37.47 | 4.55 |
2234 | 2412 | 0.670546 | CCTGCAATATAGGCCGTCCG | 60.671 | 60.000 | 0.00 | 0.00 | 37.47 | 4.79 |
2235 | 2413 | 0.685097 | TCCTGCAATATAGGCCGTCC | 59.315 | 55.000 | 0.00 | 0.00 | 35.23 | 4.79 |
2236 | 2414 | 2.350522 | CATCCTGCAATATAGGCCGTC | 58.649 | 52.381 | 0.00 | 0.00 | 35.23 | 4.79 |
2237 | 2415 | 1.003580 | CCATCCTGCAATATAGGCCGT | 59.996 | 52.381 | 0.00 | 0.00 | 35.23 | 5.68 |
2238 | 2416 | 1.742761 | CCATCCTGCAATATAGGCCG | 58.257 | 55.000 | 0.00 | 0.00 | 35.23 | 6.13 |
2239 | 2417 | 1.272092 | TGCCATCCTGCAATATAGGCC | 60.272 | 52.381 | 12.50 | 0.00 | 38.56 | 5.19 |
2240 | 2418 | 2.089980 | CTGCCATCCTGCAATATAGGC | 58.910 | 52.381 | 9.23 | 9.23 | 41.51 | 3.93 |
2241 | 2419 | 2.719739 | CCTGCCATCCTGCAATATAGG | 58.280 | 52.381 | 0.00 | 0.00 | 41.51 | 2.57 |
2242 | 2420 | 2.089980 | GCCTGCCATCCTGCAATATAG | 58.910 | 52.381 | 0.00 | 0.00 | 41.51 | 1.31 |
2243 | 2421 | 1.424684 | TGCCTGCCATCCTGCAATATA | 59.575 | 47.619 | 0.00 | 0.00 | 41.51 | 0.86 |
2244 | 2422 | 0.186630 | TGCCTGCCATCCTGCAATAT | 59.813 | 50.000 | 0.00 | 0.00 | 41.51 | 1.28 |
2245 | 2423 | 0.752743 | GTGCCTGCCATCCTGCAATA | 60.753 | 55.000 | 0.00 | 0.00 | 41.51 | 1.90 |
2246 | 2424 | 2.056223 | GTGCCTGCCATCCTGCAAT | 61.056 | 57.895 | 0.00 | 0.00 | 41.51 | 3.56 |
2247 | 2425 | 2.677524 | GTGCCTGCCATCCTGCAA | 60.678 | 61.111 | 0.00 | 0.00 | 41.51 | 4.08 |
2248 | 2426 | 3.969119 | TGTGCCTGCCATCCTGCA | 61.969 | 61.111 | 0.00 | 0.00 | 39.37 | 4.41 |
2249 | 2427 | 3.446570 | GTGTGCCTGCCATCCTGC | 61.447 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
2250 | 2428 | 2.881539 | ATCGTGTGCCTGCCATCCTG | 62.882 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2251 | 2429 | 2.599645 | GATCGTGTGCCTGCCATCCT | 62.600 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2252 | 2430 | 2.124570 | ATCGTGTGCCTGCCATCC | 60.125 | 61.111 | 0.00 | 0.00 | 0.00 | 3.51 |
2253 | 2431 | 0.816825 | ATGATCGTGTGCCTGCCATC | 60.817 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2254 | 2432 | 0.816825 | GATGATCGTGTGCCTGCCAT | 60.817 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2255 | 2433 | 1.450134 | GATGATCGTGTGCCTGCCA | 60.450 | 57.895 | 0.00 | 0.00 | 0.00 | 4.92 |
2256 | 2434 | 1.153289 | AGATGATCGTGTGCCTGCC | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
2257 | 2435 | 1.156645 | GGAGATGATCGTGTGCCTGC | 61.157 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2258 | 2436 | 0.531532 | GGGAGATGATCGTGTGCCTG | 60.532 | 60.000 | 14.56 | 0.00 | 0.00 | 4.85 |
2259 | 2437 | 0.977627 | TGGGAGATGATCGTGTGCCT | 60.978 | 55.000 | 21.02 | 0.00 | 0.00 | 4.75 |
2260 | 2438 | 0.811616 | GTGGGAGATGATCGTGTGCC | 60.812 | 60.000 | 14.91 | 14.91 | 0.00 | 5.01 |
2261 | 2439 | 0.108186 | TGTGGGAGATGATCGTGTGC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2262 | 2440 | 2.385013 | TTGTGGGAGATGATCGTGTG | 57.615 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2263 | 2441 | 2.910199 | CATTGTGGGAGATGATCGTGT | 58.090 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
2264 | 2442 | 1.600957 | GCATTGTGGGAGATGATCGTG | 59.399 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
2265 | 2443 | 1.487976 | AGCATTGTGGGAGATGATCGT | 59.512 | 47.619 | 0.00 | 0.00 | 0.00 | 3.73 |
2266 | 2444 | 2.251409 | AGCATTGTGGGAGATGATCG | 57.749 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2267 | 2445 | 7.934855 | ATAATAAGCATTGTGGGAGATGATC | 57.065 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2268 | 2446 | 9.458727 | CTTATAATAAGCATTGTGGGAGATGAT | 57.541 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
2269 | 2447 | 8.659527 | TCTTATAATAAGCATTGTGGGAGATGA | 58.340 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
2270 | 2448 | 8.853077 | TCTTATAATAAGCATTGTGGGAGATG | 57.147 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
2271 | 2449 | 8.664079 | ACTCTTATAATAAGCATTGTGGGAGAT | 58.336 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
2272 | 2450 | 8.034313 | ACTCTTATAATAAGCATTGTGGGAGA | 57.966 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
2273 | 2451 | 9.429359 | CTACTCTTATAATAAGCATTGTGGGAG | 57.571 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2274 | 2452 | 8.375506 | CCTACTCTTATAATAAGCATTGTGGGA | 58.624 | 37.037 | 0.00 | 0.00 | 0.00 | 4.37 |
2275 | 2453 | 8.553459 | CCTACTCTTATAATAAGCATTGTGGG | 57.447 | 38.462 | 0.00 | 0.00 | 0.00 | 4.61 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.