Multiple sequence alignment - TraesCS2A01G227800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G227800 chr2A 100.000 3688 0 0 1 3688 240816242 240819929 0.000000e+00 6811
1 TraesCS2A01G227800 chr2A 94.955 991 49 1 1 990 539152395 539153385 0.000000e+00 1552
2 TraesCS2A01G227800 chr2A 93.260 549 33 3 443 990 19830508 19829963 0.000000e+00 806
3 TraesCS2A01G227800 chr2A 88.629 598 52 8 2672 3262 743370565 743371153 0.000000e+00 713
4 TraesCS2A01G227800 chr2A 93.458 321 16 3 3369 3688 165017532 165017216 4.310000e-129 472
5 TraesCS2A01G227800 chr1B 92.464 2415 138 21 992 3370 199671526 199669120 0.000000e+00 3411
6 TraesCS2A01G227800 chr3B 93.574 2303 116 18 992 3265 612304991 612307290 0.000000e+00 3404
7 TraesCS2A01G227800 chr3B 95.545 1010 43 1 2348 3355 605448072 605447063 0.000000e+00 1615
8 TraesCS2A01G227800 chr3B 89.875 879 66 13 1418 2276 605454819 605453944 0.000000e+00 1109
9 TraesCS2A01G227800 chr3B 91.439 549 37 5 443 990 78842748 78843287 0.000000e+00 745
10 TraesCS2A01G227800 chr3B 81.773 812 113 13 1816 2605 393843024 393843822 0.000000e+00 647
11 TraesCS2A01G227800 chr3B 86.588 507 52 8 2125 2617 101254620 101254116 2.500000e-151 545
12 TraesCS2A01G227800 chr3B 90.591 372 22 3 1063 1422 605465485 605465115 7.160000e-132 481
13 TraesCS2A01G227800 chr3B 94.872 117 1 1 3259 3370 612313010 612313126 1.050000e-40 178
14 TraesCS2A01G227800 chr3B 93.976 83 5 0 2266 2348 605453590 605453508 3.870000e-25 126
15 TraesCS2A01G227800 chr2B 93.894 999 52 5 1 993 109104857 109103862 0.000000e+00 1498
16 TraesCS2A01G227800 chr2B 93.467 995 57 5 1 990 122363136 122362145 0.000000e+00 1471
17 TraesCS2A01G227800 chr2B 85.279 754 84 12 251 994 139386365 139385629 0.000000e+00 752
18 TraesCS2A01G227800 chr2B 86.542 535 61 4 1853 2377 711218335 711217802 2.470000e-161 579
19 TraesCS2A01G227800 chr2B 86.585 328 35 7 3370 3688 229568197 229567870 1.630000e-93 353
20 TraesCS2A01G227800 chr2B 84.404 327 39 9 3367 3683 550116522 550116846 9.950000e-81 311
21 TraesCS2A01G227800 chr3A 90.691 999 64 13 1 990 109997968 109996990 0.000000e+00 1303
22 TraesCS2A01G227800 chr3A 90.061 825 74 6 1480 2304 442907226 442906410 0.000000e+00 1062
23 TraesCS2A01G227800 chr3A 87.608 347 36 6 1225 1564 442907572 442907226 2.670000e-106 396
24 TraesCS2A01G227800 chr3A 86.016 379 34 5 2885 3262 17537707 17537347 4.470000e-104 388
25 TraesCS2A01G227800 chr3A 86.016 379 34 5 2885 3262 182631747 182632107 4.470000e-104 388
26 TraesCS2A01G227800 chr2D 88.699 1053 86 13 1480 2517 117194373 117193339 0.000000e+00 1254
27 TraesCS2A01G227800 chr2D 92.720 522 37 1 470 990 376040862 376041383 0.000000e+00 752
28 TraesCS2A01G227800 chr2D 92.901 493 31 2 499 990 376038291 376038780 0.000000e+00 713
29 TraesCS2A01G227800 chr2D 88.810 563 41 6 443 1002 597153674 597154217 0.000000e+00 671
30 TraesCS2A01G227800 chr2D 89.154 544 39 5 443 985 597327589 597328113 0.000000e+00 660
31 TraesCS2A01G227800 chr2D 87.324 355 29 8 1225 1564 117194726 117194373 3.450000e-105 392
32 TraesCS2A01G227800 chr2D 85.231 325 38 10 3371 3685 43434611 43434935 3.550000e-85 326
33 TraesCS2A01G227800 chr5A 90.036 823 74 6 1480 2302 691995664 691994850 0.000000e+00 1059
34 TraesCS2A01G227800 chr5A 87.896 347 34 6 1225 1564 691996009 691995664 5.740000e-108 401
35 TraesCS2A01G227800 chr7B 89.818 825 76 6 1480 2304 381905486 381906302 0.000000e+00 1051
36 TraesCS2A01G227800 chr7B 84.757 761 92 14 14 756 385547761 385548515 0.000000e+00 741
37 TraesCS2A01G227800 chr7B 88.000 350 35 4 1222 1564 381905137 381905486 1.230000e-109 407
38 TraesCS2A01G227800 chr6B 89.182 758 70 10 1 747 384175455 384176211 0.000000e+00 935
39 TraesCS2A01G227800 chr6B 85.733 764 90 10 1 747 286623303 286624064 0.000000e+00 789
40 TraesCS2A01G227800 chr6B 86.016 379 34 5 2885 3262 92570085 92570445 4.470000e-104 388
41 TraesCS2A01G227800 chr4A 93.116 552 34 3 443 993 449866910 449866362 0.000000e+00 806
42 TraesCS2A01G227800 chr4A 86.585 328 34 4 3371 3688 352589066 352588739 1.630000e-93 353
43 TraesCS2A01G227800 chr7D 86.129 757 92 11 1 747 104738274 104739027 0.000000e+00 804
44 TraesCS2A01G227800 chr7D 93.089 492 31 3 501 990 23084995 23084505 0.000000e+00 717
45 TraesCS2A01G227800 chr7D 95.046 323 10 5 3367 3688 176454708 176455025 1.530000e-138 503
46 TraesCS2A01G227800 chr1D 89.967 598 44 8 2672 3262 439789227 439788639 0.000000e+00 758
47 TraesCS2A01G227800 chr1D 94.106 492 27 2 501 990 50129548 50129057 0.000000e+00 747
48 TraesCS2A01G227800 chr1D 84.485 767 81 14 1 747 216240592 216239844 0.000000e+00 723
49 TraesCS2A01G227800 chr1D 91.396 523 25 6 469 990 50114530 50114027 0.000000e+00 699
50 TraesCS2A01G227800 chr1D 86.687 323 34 9 3370 3685 466380870 466381190 2.110000e-92 350
51 TraesCS2A01G227800 chr6D 85.369 745 92 11 14 751 218519960 218520694 0.000000e+00 756
52 TraesCS2A01G227800 chr4D 94.320 493 27 1 499 990 173183436 173182944 0.000000e+00 754
53 TraesCS2A01G227800 chr4D 87.584 596 39 18 2672 3261 472679957 472679391 0.000000e+00 658
54 TraesCS2A01G227800 chr4D 90.947 486 35 3 506 990 173180564 173180087 0.000000e+00 645
55 TraesCS2A01G227800 chr4D 88.793 116 7 2 3261 3370 472679355 472679240 1.790000e-28 137
56 TraesCS2A01G227800 chr5D 93.952 496 28 2 499 993 433475516 433475022 0.000000e+00 749
57 TraesCS2A01G227800 chr4B 84.677 744 94 11 251 990 509340527 509341254 0.000000e+00 725
58 TraesCS2A01G227800 chr4B 86.457 635 73 6 354 986 509386799 509387422 0.000000e+00 684
59 TraesCS2A01G227800 chr4B 84.451 328 40 10 3370 3688 416622018 416621693 2.770000e-81 313
60 TraesCS2A01G227800 chr4B 83.750 160 15 3 1423 1578 552844278 552844430 1.380000e-29 141
61 TraesCS2A01G227800 chr6A 85.588 680 83 10 14 691 297766540 297767206 0.000000e+00 699
62 TraesCS2A01G227800 chrUn 86.380 558 60 5 1830 2377 94937093 94937644 2.450000e-166 595
63 TraesCS2A01G227800 chrUn 85.243 576 71 8 2039 2603 351702588 351702016 6.870000e-162 580
64 TraesCS2A01G227800 chrUn 85.243 576 71 8 2039 2603 351801565 351800993 6.870000e-162 580
65 TraesCS2A01G227800 chrUn 85.243 576 71 8 2039 2603 461880716 461881288 6.870000e-162 580
66 TraesCS2A01G227800 chr7A 80.390 821 123 20 1627 2421 629778675 629777867 1.140000e-164 590
67 TraesCS2A01G227800 chr7A 93.125 320 16 4 3370 3688 94974685 94974371 7.210000e-127 464
68 TraesCS2A01G227800 chr1A 93.046 302 19 1 487 788 44382309 44382010 1.220000e-119 440
69 TraesCS2A01G227800 chr5B 82.718 515 50 19 2125 2617 125267227 125266730 4.400000e-114 422
70 TraesCS2A01G227800 chr5B 85.752 379 35 5 2885 3262 317697924 317697564 2.080000e-102 383
71 TraesCS2A01G227800 chr3D 82.979 141 14 3 2264 2394 535743977 535744117 6.470000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G227800 chr2A 240816242 240819929 3687 False 6811.0 6811 100.0000 1 3688 1 chr2A.!!$F1 3687
1 TraesCS2A01G227800 chr2A 539152395 539153385 990 False 1552.0 1552 94.9550 1 990 1 chr2A.!!$F2 989
2 TraesCS2A01G227800 chr2A 19829963 19830508 545 True 806.0 806 93.2600 443 990 1 chr2A.!!$R1 547
3 TraesCS2A01G227800 chr2A 743370565 743371153 588 False 713.0 713 88.6290 2672 3262 1 chr2A.!!$F3 590
4 TraesCS2A01G227800 chr1B 199669120 199671526 2406 True 3411.0 3411 92.4640 992 3370 1 chr1B.!!$R1 2378
5 TraesCS2A01G227800 chr3B 612304991 612307290 2299 False 3404.0 3404 93.5740 992 3265 1 chr3B.!!$F3 2273
6 TraesCS2A01G227800 chr3B 605447063 605448072 1009 True 1615.0 1615 95.5450 2348 3355 1 chr3B.!!$R2 1007
7 TraesCS2A01G227800 chr3B 78842748 78843287 539 False 745.0 745 91.4390 443 990 1 chr3B.!!$F1 547
8 TraesCS2A01G227800 chr3B 393843024 393843822 798 False 647.0 647 81.7730 1816 2605 1 chr3B.!!$F2 789
9 TraesCS2A01G227800 chr3B 605453508 605454819 1311 True 617.5 1109 91.9255 1418 2348 2 chr3B.!!$R4 930
10 TraesCS2A01G227800 chr3B 101254116 101254620 504 True 545.0 545 86.5880 2125 2617 1 chr3B.!!$R1 492
11 TraesCS2A01G227800 chr2B 109103862 109104857 995 True 1498.0 1498 93.8940 1 993 1 chr2B.!!$R1 992
12 TraesCS2A01G227800 chr2B 122362145 122363136 991 True 1471.0 1471 93.4670 1 990 1 chr2B.!!$R2 989
13 TraesCS2A01G227800 chr2B 139385629 139386365 736 True 752.0 752 85.2790 251 994 1 chr2B.!!$R3 743
14 TraesCS2A01G227800 chr2B 711217802 711218335 533 True 579.0 579 86.5420 1853 2377 1 chr2B.!!$R5 524
15 TraesCS2A01G227800 chr3A 109996990 109997968 978 True 1303.0 1303 90.6910 1 990 1 chr3A.!!$R2 989
16 TraesCS2A01G227800 chr3A 442906410 442907572 1162 True 729.0 1062 88.8345 1225 2304 2 chr3A.!!$R3 1079
17 TraesCS2A01G227800 chr2D 117193339 117194726 1387 True 823.0 1254 88.0115 1225 2517 2 chr2D.!!$R1 1292
18 TraesCS2A01G227800 chr2D 376038291 376041383 3092 False 732.5 752 92.8105 470 990 2 chr2D.!!$F4 520
19 TraesCS2A01G227800 chr2D 597153674 597154217 543 False 671.0 671 88.8100 443 1002 1 chr2D.!!$F2 559
20 TraesCS2A01G227800 chr2D 597327589 597328113 524 False 660.0 660 89.1540 443 985 1 chr2D.!!$F3 542
21 TraesCS2A01G227800 chr5A 691994850 691996009 1159 True 730.0 1059 88.9660 1225 2302 2 chr5A.!!$R1 1077
22 TraesCS2A01G227800 chr7B 385547761 385548515 754 False 741.0 741 84.7570 14 756 1 chr7B.!!$F1 742
23 TraesCS2A01G227800 chr7B 381905137 381906302 1165 False 729.0 1051 88.9090 1222 2304 2 chr7B.!!$F2 1082
24 TraesCS2A01G227800 chr6B 384175455 384176211 756 False 935.0 935 89.1820 1 747 1 chr6B.!!$F3 746
25 TraesCS2A01G227800 chr6B 286623303 286624064 761 False 789.0 789 85.7330 1 747 1 chr6B.!!$F2 746
26 TraesCS2A01G227800 chr4A 449866362 449866910 548 True 806.0 806 93.1160 443 993 1 chr4A.!!$R2 550
27 TraesCS2A01G227800 chr7D 104738274 104739027 753 False 804.0 804 86.1290 1 747 1 chr7D.!!$F1 746
28 TraesCS2A01G227800 chr1D 439788639 439789227 588 True 758.0 758 89.9670 2672 3262 1 chr1D.!!$R4 590
29 TraesCS2A01G227800 chr1D 216239844 216240592 748 True 723.0 723 84.4850 1 747 1 chr1D.!!$R3 746
30 TraesCS2A01G227800 chr1D 50114027 50114530 503 True 699.0 699 91.3960 469 990 1 chr1D.!!$R1 521
31 TraesCS2A01G227800 chr6D 218519960 218520694 734 False 756.0 756 85.3690 14 751 1 chr6D.!!$F1 737
32 TraesCS2A01G227800 chr4D 173180087 173183436 3349 True 699.5 754 92.6335 499 990 2 chr4D.!!$R1 491
33 TraesCS2A01G227800 chr4D 472679240 472679957 717 True 397.5 658 88.1885 2672 3370 2 chr4D.!!$R2 698
34 TraesCS2A01G227800 chr4B 509340527 509341254 727 False 725.0 725 84.6770 251 990 1 chr4B.!!$F1 739
35 TraesCS2A01G227800 chr4B 509386799 509387422 623 False 684.0 684 86.4570 354 986 1 chr4B.!!$F2 632
36 TraesCS2A01G227800 chr6A 297766540 297767206 666 False 699.0 699 85.5880 14 691 1 chr6A.!!$F1 677
37 TraesCS2A01G227800 chrUn 94937093 94937644 551 False 595.0 595 86.3800 1830 2377 1 chrUn.!!$F1 547
38 TraesCS2A01G227800 chrUn 351702016 351702588 572 True 580.0 580 85.2430 2039 2603 1 chrUn.!!$R1 564
39 TraesCS2A01G227800 chrUn 351800993 351801565 572 True 580.0 580 85.2430 2039 2603 1 chrUn.!!$R2 564
40 TraesCS2A01G227800 chrUn 461880716 461881288 572 False 580.0 580 85.2430 2039 2603 1 chrUn.!!$F2 564
41 TraesCS2A01G227800 chr7A 629777867 629778675 808 True 590.0 590 80.3900 1627 2421 1 chr7A.!!$R2 794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 400 0.523335 GCGAATTTGCCGCCACTAAG 60.523 55.000 6.38 0.0 46.22 2.18 F
1822 6936 1.002134 CCACACCCGGAAGCAAGAT 60.002 57.895 0.73 0.0 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 6952 0.036022 TCATGCCACCATCGTTGTCA 59.964 50.0 0.00 0.0 0.00 3.58 R
3556 9133 0.032952 GGCGGTCGCATAACAGGATA 59.967 55.0 17.21 0.0 44.11 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 75 4.709397 TGGTTTCCAAACAGACAGAAACAT 59.291 37.500 14.33 0.00 46.28 2.71
138 146 6.534475 TTAAAAATCCAGCAAGCTGATCAT 57.466 33.333 22.76 9.05 46.30 2.45
291 317 1.895020 TTGATAGCACCGACGCCCTT 61.895 55.000 0.00 0.00 0.00 3.95
301 327 1.287425 CGACGCCCTTAGTTTGATCC 58.713 55.000 0.00 0.00 0.00 3.36
374 400 0.523335 GCGAATTTGCCGCCACTAAG 60.523 55.000 6.38 0.00 46.22 2.18
539 2646 8.659527 TGATGATCCTATAGTTTTTGCCTGATA 58.340 33.333 0.00 0.00 0.00 2.15
677 2786 3.876914 CCAAAGCACGATAATCCTTGCTA 59.123 43.478 3.00 0.00 44.57 3.49
953 5924 1.608717 CGCCTAGCTTGGTGGAGTCT 61.609 60.000 18.68 0.00 34.20 3.24
964 5935 2.176798 TGGTGGAGTCTTGAAATTGGGT 59.823 45.455 0.00 0.00 0.00 4.51
990 5961 1.046472 TCCTCCGTCGTGCCCATATT 61.046 55.000 0.00 0.00 0.00 1.28
1004 5975 6.479884 GTGCCCATATTAGAAGGAGAATGAT 58.520 40.000 0.00 0.00 0.00 2.45
1061 6033 4.088762 CACACACATCGGCACCGC 62.089 66.667 3.66 0.00 39.59 5.68
1085 6057 4.767255 GGCCACAGCAGGAGGACG 62.767 72.222 0.00 0.00 42.56 4.79
1172 6144 1.226030 CGTCCCAGGTTCGTGTTTCC 61.226 60.000 0.00 0.00 0.00 3.13
1195 6167 6.909158 TCCCCCTATAGTTCTCTGAATTTTCT 59.091 38.462 0.00 0.00 0.00 2.52
1206 6179 8.606602 GTTCTCTGAATTTTCTTGCACAATTTT 58.393 29.630 0.00 0.00 0.00 1.82
1207 6180 8.356533 TCTCTGAATTTTCTTGCACAATTTTC 57.643 30.769 0.00 0.00 0.00 2.29
1270 6251 5.579047 TGTTTGATTATGACCCCAATGAGT 58.421 37.500 0.00 0.00 0.00 3.41
1370 6369 5.645497 GCAGTAAGGATGTCAAGTTTGAGAT 59.355 40.000 4.38 4.38 43.00 2.75
1379 6378 7.201591 GGATGTCAAGTTTGAGATGTCACATAG 60.202 40.741 8.98 0.00 40.75 2.23
1428 6429 7.347252 TCTAATAAGGTGAAGAGAGACTGCTA 58.653 38.462 0.00 0.00 0.00 3.49
1438 6440 5.669164 AGAGAGACTGCTAGTTTAAAGGG 57.331 43.478 0.00 0.00 0.00 3.95
1442 6444 7.620094 AGAGAGACTGCTAGTTTAAAGGGAATA 59.380 37.037 0.00 0.00 0.00 1.75
1478 6480 7.172019 ACATGATTTCTTCCAATTCAACAAAGC 59.828 33.333 0.00 0.00 0.00 3.51
1579 6581 6.049790 CCCCAATACTGTTAGCTTTCTAGAC 58.950 44.000 0.00 0.00 0.00 2.59
1584 6586 9.209175 CAATACTGTTAGCTTTCTAGACAAGTT 57.791 33.333 0.00 10.67 0.00 2.66
1585 6587 8.989653 ATACTGTTAGCTTTCTAGACAAGTTC 57.010 34.615 0.00 2.52 0.00 3.01
1586 6588 6.817184 ACTGTTAGCTTTCTAGACAAGTTCA 58.183 36.000 0.00 5.40 0.00 3.18
1588 6590 7.050970 TGTTAGCTTTCTAGACAAGTTCAGA 57.949 36.000 0.00 0.49 0.00 3.27
1589 6591 7.497595 TGTTAGCTTTCTAGACAAGTTCAGAA 58.502 34.615 0.00 0.00 0.00 3.02
1590 6592 8.150945 TGTTAGCTTTCTAGACAAGTTCAGAAT 58.849 33.333 0.00 0.00 0.00 2.40
1591 6593 8.994170 GTTAGCTTTCTAGACAAGTTCAGAATT 58.006 33.333 0.00 0.00 0.00 2.17
1592 6594 7.665561 AGCTTTCTAGACAAGTTCAGAATTC 57.334 36.000 0.00 0.00 0.00 2.17
1593 6595 7.220030 AGCTTTCTAGACAAGTTCAGAATTCA 58.780 34.615 8.44 0.00 0.00 2.57
1594 6596 7.172361 AGCTTTCTAGACAAGTTCAGAATTCAC 59.828 37.037 8.44 0.00 0.00 3.18
1595 6597 7.172361 GCTTTCTAGACAAGTTCAGAATTCACT 59.828 37.037 8.44 0.00 0.00 3.41
1597 6599 7.290110 TCTAGACAAGTTCAGAATTCACTGA 57.710 36.000 8.44 0.43 43.83 3.41
1598 6600 7.148641 TCTAGACAAGTTCAGAATTCACTGAC 58.851 38.462 8.44 1.04 44.94 3.51
1599 6601 4.747108 AGACAAGTTCAGAATTCACTGACG 59.253 41.667 8.44 0.00 44.94 4.35
1601 6603 4.271049 ACAAGTTCAGAATTCACTGACGTG 59.729 41.667 8.44 10.84 44.94 4.49
1602 6604 3.393800 AGTTCAGAATTCACTGACGTGG 58.606 45.455 8.44 0.00 44.94 4.94
1603 6605 3.069586 AGTTCAGAATTCACTGACGTGGA 59.930 43.478 8.44 0.00 44.94 4.02
1604 6606 3.303881 TCAGAATTCACTGACGTGGAG 57.696 47.619 8.44 0.00 41.21 3.86
1605 6607 2.890945 TCAGAATTCACTGACGTGGAGA 59.109 45.455 8.44 0.00 41.21 3.71
1606 6608 3.511540 TCAGAATTCACTGACGTGGAGAT 59.488 43.478 8.44 0.00 41.21 2.75
1607 6609 3.862267 CAGAATTCACTGACGTGGAGATC 59.138 47.826 8.44 0.00 41.53 2.75
1608 6610 3.766591 AGAATTCACTGACGTGGAGATCT 59.233 43.478 8.44 0.00 41.53 2.75
1609 6611 3.791973 ATTCACTGACGTGGAGATCTC 57.208 47.619 14.75 14.75 41.53 2.75
1611 6613 2.360844 TCACTGACGTGGAGATCTCTC 58.639 52.381 21.81 12.06 41.53 3.20
1612 6614 2.087646 CACTGACGTGGAGATCTCTCA 58.912 52.381 21.81 15.75 44.60 3.27
1613 6615 2.489722 CACTGACGTGGAGATCTCTCAA 59.510 50.000 21.81 6.00 44.60 3.02
1614 6616 3.130164 CACTGACGTGGAGATCTCTCAAT 59.870 47.826 21.81 5.33 44.60 2.57
1615 6617 3.766591 ACTGACGTGGAGATCTCTCAATT 59.233 43.478 21.81 8.61 44.60 2.32
1616 6618 4.950475 ACTGACGTGGAGATCTCTCAATTA 59.050 41.667 21.81 5.12 44.60 1.40
1622 6729 7.957002 ACGTGGAGATCTCTCAATTAATATGT 58.043 34.615 21.81 6.60 44.60 2.29
1648 6755 1.739049 GAGCTACTCGAGGCAGCAT 59.261 57.895 30.91 20.72 37.78 3.79
1751 6865 2.344203 CGGCTCCAACGACCTCTCT 61.344 63.158 0.00 0.00 0.00 3.10
1822 6936 1.002134 CCACACCCGGAAGCAAGAT 60.002 57.895 0.73 0.00 0.00 2.40
1825 6939 1.299648 CACCCGGAAGCAAGATGGA 59.700 57.895 0.73 0.00 0.00 3.41
1838 6952 3.087031 CAAGATGGACAAGGTGCTCATT 58.913 45.455 0.00 0.00 0.00 2.57
1843 6957 2.229792 GGACAAGGTGCTCATTGACAA 58.770 47.619 18.84 0.00 38.49 3.18
1857 6971 0.036022 TGACAACGATGGTGGCATGA 59.964 50.000 0.00 0.00 0.00 3.07
1973 7087 9.420551 GTTTAATGCTACACTTCTACTAACACT 57.579 33.333 0.00 0.00 0.00 3.55
1986 7100 8.528044 TTCTACTAACACTTTGGACCAAATTT 57.472 30.769 19.87 14.79 32.70 1.82
2042 7156 1.212616 GCATGGACGACTATCTGCAC 58.787 55.000 0.00 0.00 0.00 4.57
2217 7333 7.281999 GCTTATGATGTTTAGGAAAGAAGAGCT 59.718 37.037 0.00 0.00 0.00 4.09
2220 7336 7.246171 TGATGTTTAGGAAAGAAGAGCTAGT 57.754 36.000 0.00 0.00 0.00 2.57
2229 7345 8.028652 AGGAAAGAAGAGCTAGTAATAGCAAT 57.971 34.615 22.97 8.92 45.11 3.56
2231 7347 9.765795 GGAAAGAAGAGCTAGTAATAGCAATAA 57.234 33.333 22.97 0.00 45.11 1.40
2310 7808 0.879839 TGATGCACACTGTGTCACCG 60.880 55.000 11.12 0.79 35.75 4.94
2510 8019 6.433404 TCGATGACTCAGACCTTAGTTACTTT 59.567 38.462 0.00 0.00 0.00 2.66
2607 8125 6.223138 TCTTGAATACGTAGCAAACAACTG 57.777 37.500 12.79 3.49 0.00 3.16
2609 8127 3.810386 TGAATACGTAGCAAACAACTGCA 59.190 39.130 0.08 0.00 45.18 4.41
2624 8142 5.798132 ACAACTGCATCAGACAAAGATCTA 58.202 37.500 0.00 0.00 35.18 1.98
2871 8400 2.027192 TGAATCGAACAAGGAGGAAGGG 60.027 50.000 0.00 0.00 0.00 3.95
2876 8405 1.128188 AACAAGGAGGAAGGGCGACT 61.128 55.000 0.00 0.00 0.00 4.18
3032 8563 1.280998 ACCCAAGTTAGGATTGTCCCG 59.719 52.381 0.00 0.00 37.19 5.14
3056 8587 6.292973 CGTGTTAAATGTGTGCTTGTACCTAA 60.293 38.462 0.00 0.00 0.00 2.69
3071 8602 9.665264 GCTTGTACCTAATGCTAAATTAATCAC 57.335 33.333 0.00 0.00 0.00 3.06
3092 8623 2.559440 GCACTTCCATTTTGGTTGCAA 58.441 42.857 0.00 0.00 38.14 4.08
3370 8947 3.906720 ACTGACGGGCACACTAATATT 57.093 42.857 0.00 0.00 0.00 1.28
3371 8948 4.216411 ACTGACGGGCACACTAATATTT 57.784 40.909 0.00 0.00 0.00 1.40
3372 8949 4.585879 ACTGACGGGCACACTAATATTTT 58.414 39.130 0.00 0.00 0.00 1.82
3373 8950 5.007682 ACTGACGGGCACACTAATATTTTT 58.992 37.500 0.00 0.00 0.00 1.94
3391 8968 2.810439 TTTTTGGAAATGGAGGCGTG 57.190 45.000 0.00 0.00 0.00 5.34
3392 8969 0.316841 TTTTGGAAATGGAGGCGTGC 59.683 50.000 0.00 0.00 0.00 5.34
3393 8970 1.531739 TTTGGAAATGGAGGCGTGCC 61.532 55.000 1.67 1.67 0.00 5.01
3394 8971 3.140814 GGAAATGGAGGCGTGCCC 61.141 66.667 7.39 0.00 36.58 5.36
3404 8981 4.400961 GCGTGCCCTCTGCCTCTT 62.401 66.667 0.00 0.00 40.16 2.85
3405 8982 2.125350 CGTGCCCTCTGCCTCTTC 60.125 66.667 0.00 0.00 40.16 2.87
3406 8983 2.947532 CGTGCCCTCTGCCTCTTCA 61.948 63.158 0.00 0.00 40.16 3.02
3407 8984 1.606531 GTGCCCTCTGCCTCTTCAT 59.393 57.895 0.00 0.00 40.16 2.57
3408 8985 0.833287 GTGCCCTCTGCCTCTTCATA 59.167 55.000 0.00 0.00 40.16 2.15
3409 8986 1.210478 GTGCCCTCTGCCTCTTCATAA 59.790 52.381 0.00 0.00 40.16 1.90
3410 8987 2.130193 TGCCCTCTGCCTCTTCATAAT 58.870 47.619 0.00 0.00 40.16 1.28
3411 8988 3.071602 GTGCCCTCTGCCTCTTCATAATA 59.928 47.826 0.00 0.00 40.16 0.98
3412 8989 3.716353 TGCCCTCTGCCTCTTCATAATAA 59.284 43.478 0.00 0.00 40.16 1.40
3413 8990 4.352001 TGCCCTCTGCCTCTTCATAATAAT 59.648 41.667 0.00 0.00 40.16 1.28
3414 8991 4.699257 GCCCTCTGCCTCTTCATAATAATG 59.301 45.833 0.00 0.00 0.00 1.90
3415 8992 5.513788 GCCCTCTGCCTCTTCATAATAATGA 60.514 44.000 0.00 0.00 40.43 2.57
3416 8993 6.719301 CCCTCTGCCTCTTCATAATAATGAT 58.281 40.000 0.00 0.00 41.73 2.45
3417 8994 6.598457 CCCTCTGCCTCTTCATAATAATGATG 59.402 42.308 0.00 0.00 41.73 3.07
3418 8995 6.093771 CCTCTGCCTCTTCATAATAATGATGC 59.906 42.308 0.00 0.00 41.73 3.91
3419 8996 6.536447 TCTGCCTCTTCATAATAATGATGCA 58.464 36.000 0.00 0.00 41.73 3.96
3420 8997 7.173032 TCTGCCTCTTCATAATAATGATGCAT 58.827 34.615 0.00 0.00 41.73 3.96
3421 8998 7.120726 TCTGCCTCTTCATAATAATGATGCATG 59.879 37.037 2.46 0.00 41.73 4.06
3422 8999 6.034591 GCCTCTTCATAATAATGATGCATGC 58.965 40.000 11.82 11.82 41.73 4.06
3423 9000 6.349860 GCCTCTTCATAATAATGATGCATGCA 60.350 38.462 25.04 25.04 41.73 3.96
3424 9001 7.630728 GCCTCTTCATAATAATGATGCATGCAT 60.631 37.037 32.66 32.66 41.73 3.96
3439 9016 8.821147 GATGCATGCATCCATCTTATTAAAAA 57.179 30.769 39.28 6.77 45.06 1.94
3440 9017 8.827177 ATGCATGCATCCATCTTATTAAAAAG 57.173 30.769 27.46 0.00 29.42 2.27
3441 9018 7.784037 TGCATGCATCCATCTTATTAAAAAGT 58.216 30.769 18.46 0.00 0.00 2.66
3442 9019 7.922278 TGCATGCATCCATCTTATTAAAAAGTC 59.078 33.333 18.46 0.00 0.00 3.01
3443 9020 8.139989 GCATGCATCCATCTTATTAAAAAGTCT 58.860 33.333 14.21 0.00 0.00 3.24
3444 9021 9.674824 CATGCATCCATCTTATTAAAAAGTCTC 57.325 33.333 0.00 0.00 0.00 3.36
3445 9022 7.919690 TGCATCCATCTTATTAAAAAGTCTCG 58.080 34.615 0.00 0.00 0.00 4.04
3446 9023 7.768582 TGCATCCATCTTATTAAAAAGTCTCGA 59.231 33.333 0.00 0.00 0.00 4.04
3447 9024 8.612619 GCATCCATCTTATTAAAAAGTCTCGAA 58.387 33.333 0.00 0.00 0.00 3.71
3449 9026 9.892130 ATCCATCTTATTAAAAAGTCTCGAAGT 57.108 29.630 0.00 0.00 0.00 3.01
3454 9031 9.813446 TCTTATTAAAAAGTCTCGAAGTATCCC 57.187 33.333 0.00 0.00 0.00 3.85
3455 9032 9.595823 CTTATTAAAAAGTCTCGAAGTATCCCA 57.404 33.333 0.00 0.00 0.00 4.37
3456 9033 9.947433 TTATTAAAAAGTCTCGAAGTATCCCAA 57.053 29.630 0.00 0.00 0.00 4.12
3457 9034 8.857694 ATTAAAAAGTCTCGAAGTATCCCAAA 57.142 30.769 0.00 0.00 0.00 3.28
3458 9035 6.803154 AAAAAGTCTCGAAGTATCCCAAAG 57.197 37.500 0.00 0.00 0.00 2.77
3459 9036 5.485209 AAAGTCTCGAAGTATCCCAAAGT 57.515 39.130 0.00 0.00 0.00 2.66
3460 9037 4.722361 AGTCTCGAAGTATCCCAAAGTC 57.278 45.455 0.00 0.00 0.00 3.01
3461 9038 4.087182 AGTCTCGAAGTATCCCAAAGTCA 58.913 43.478 0.00 0.00 0.00 3.41
3462 9039 4.712337 AGTCTCGAAGTATCCCAAAGTCAT 59.288 41.667 0.00 0.00 0.00 3.06
3463 9040 4.806247 GTCTCGAAGTATCCCAAAGTCATG 59.194 45.833 0.00 0.00 0.00 3.07
3464 9041 4.709886 TCTCGAAGTATCCCAAAGTCATGA 59.290 41.667 0.00 0.00 0.00 3.07
3465 9042 5.186992 TCTCGAAGTATCCCAAAGTCATGAA 59.813 40.000 0.00 0.00 0.00 2.57
3466 9043 5.419542 TCGAAGTATCCCAAAGTCATGAAG 58.580 41.667 0.00 0.00 0.00 3.02
3467 9044 4.572389 CGAAGTATCCCAAAGTCATGAAGG 59.428 45.833 0.00 0.00 0.00 3.46
3468 9045 5.501156 GAAGTATCCCAAAGTCATGAAGGT 58.499 41.667 0.00 0.00 0.00 3.50
3469 9046 6.629515 CGAAGTATCCCAAAGTCATGAAGGTA 60.630 42.308 0.00 0.00 0.00 3.08
3470 9047 6.831664 AGTATCCCAAAGTCATGAAGGTAT 57.168 37.500 0.00 0.00 0.00 2.73
3471 9048 7.213178 AGTATCCCAAAGTCATGAAGGTATT 57.787 36.000 0.00 0.00 0.00 1.89
3472 9049 8.331931 AGTATCCCAAAGTCATGAAGGTATTA 57.668 34.615 0.00 0.00 0.00 0.98
3473 9050 8.211629 AGTATCCCAAAGTCATGAAGGTATTAC 58.788 37.037 0.00 0.33 0.00 1.89
3474 9051 6.381498 TCCCAAAGTCATGAAGGTATTACA 57.619 37.500 0.00 0.00 0.00 2.41
3475 9052 6.414732 TCCCAAAGTCATGAAGGTATTACAG 58.585 40.000 0.00 0.00 0.00 2.74
3476 9053 5.066505 CCCAAAGTCATGAAGGTATTACAGC 59.933 44.000 0.00 0.00 0.00 4.40
3477 9054 5.882557 CCAAAGTCATGAAGGTATTACAGCT 59.117 40.000 0.00 0.00 36.21 4.24
3478 9055 6.037610 CCAAAGTCATGAAGGTATTACAGCTC 59.962 42.308 0.00 0.00 32.46 4.09
3479 9056 4.938080 AGTCATGAAGGTATTACAGCTCG 58.062 43.478 0.00 0.00 32.46 5.03
3480 9057 3.491267 GTCATGAAGGTATTACAGCTCGC 59.509 47.826 0.00 0.00 32.46 5.03
3481 9058 3.132111 TCATGAAGGTATTACAGCTCGCA 59.868 43.478 0.00 0.00 32.46 5.10
3482 9059 3.603158 TGAAGGTATTACAGCTCGCAA 57.397 42.857 0.00 0.00 32.46 4.85
3483 9060 3.521560 TGAAGGTATTACAGCTCGCAAG 58.478 45.455 0.00 0.00 32.46 4.01
3527 9104 7.558161 AATAAATAAGTACAACCGGTAAGGC 57.442 36.000 8.00 0.00 46.52 4.35
3528 9105 4.556592 AATAAGTACAACCGGTAAGGCA 57.443 40.909 8.00 0.00 46.52 4.75
3529 9106 2.934886 AAGTACAACCGGTAAGGCAA 57.065 45.000 8.00 0.00 46.52 4.52
3530 9107 2.934886 AGTACAACCGGTAAGGCAAA 57.065 45.000 8.00 0.00 46.52 3.68
3531 9108 3.211718 AGTACAACCGGTAAGGCAAAA 57.788 42.857 8.00 0.00 46.52 2.44
3532 9109 3.553904 AGTACAACCGGTAAGGCAAAAA 58.446 40.909 8.00 0.00 46.52 1.94
3552 9129 5.880164 AAAAGAGGATAAGCTCCCTAGAC 57.120 43.478 2.66 0.00 46.27 2.59
3553 9130 4.825199 AAGAGGATAAGCTCCCTAGACT 57.175 45.455 2.66 0.00 46.27 3.24
3554 9131 4.382386 AGAGGATAAGCTCCCTAGACTC 57.618 50.000 2.66 0.00 46.27 3.36
3555 9132 3.075432 AGAGGATAAGCTCCCTAGACTCC 59.925 52.174 2.66 0.00 46.27 3.85
3556 9133 3.068237 AGGATAAGCTCCCTAGACTCCT 58.932 50.000 0.00 0.00 46.27 3.69
3557 9134 4.252853 AGGATAAGCTCCCTAGACTCCTA 58.747 47.826 0.00 0.00 46.27 2.94
3558 9135 4.861454 AGGATAAGCTCCCTAGACTCCTAT 59.139 45.833 0.00 0.00 46.27 2.57
3559 9136 5.044402 AGGATAAGCTCCCTAGACTCCTATC 60.044 48.000 0.00 0.00 46.27 2.08
3560 9137 3.536075 AAGCTCCCTAGACTCCTATCC 57.464 52.381 0.00 0.00 0.00 2.59
3561 9138 2.725795 AGCTCCCTAGACTCCTATCCT 58.274 52.381 0.00 0.00 0.00 3.24
3562 9139 2.378547 AGCTCCCTAGACTCCTATCCTG 59.621 54.545 0.00 0.00 0.00 3.86
3563 9140 2.109304 GCTCCCTAGACTCCTATCCTGT 59.891 54.545 0.00 0.00 0.00 4.00
3564 9141 3.437344 GCTCCCTAGACTCCTATCCTGTT 60.437 52.174 0.00 0.00 0.00 3.16
3565 9142 4.202588 GCTCCCTAGACTCCTATCCTGTTA 60.203 50.000 0.00 0.00 0.00 2.41
3566 9143 5.517655 GCTCCCTAGACTCCTATCCTGTTAT 60.518 48.000 0.00 0.00 0.00 1.89
3567 9144 5.893500 TCCCTAGACTCCTATCCTGTTATG 58.106 45.833 0.00 0.00 0.00 1.90
3568 9145 4.464597 CCCTAGACTCCTATCCTGTTATGC 59.535 50.000 0.00 0.00 0.00 3.14
3569 9146 4.156922 CCTAGACTCCTATCCTGTTATGCG 59.843 50.000 0.00 0.00 0.00 4.73
3570 9147 3.833732 AGACTCCTATCCTGTTATGCGA 58.166 45.455 0.00 0.00 0.00 5.10
3571 9148 3.570550 AGACTCCTATCCTGTTATGCGAC 59.429 47.826 0.00 0.00 0.00 5.19
3572 9149 2.628657 ACTCCTATCCTGTTATGCGACC 59.371 50.000 0.00 0.00 0.00 4.79
3573 9150 1.611977 TCCTATCCTGTTATGCGACCG 59.388 52.381 0.00 0.00 0.00 4.79
3574 9151 1.419374 CTATCCTGTTATGCGACCGC 58.581 55.000 7.53 7.53 42.35 5.68
3575 9152 0.032952 TATCCTGTTATGCGACCGCC 59.967 55.000 12.08 0.00 41.09 6.13
3576 9153 1.966901 ATCCTGTTATGCGACCGCCA 61.967 55.000 12.08 1.69 41.09 5.69
3577 9154 1.523711 CCTGTTATGCGACCGCCAT 60.524 57.895 12.08 8.00 41.09 4.40
3578 9155 1.498865 CCTGTTATGCGACCGCCATC 61.499 60.000 12.08 1.22 41.09 3.51
3579 9156 1.498865 CTGTTATGCGACCGCCATCC 61.499 60.000 12.08 0.00 41.09 3.51
3580 9157 2.279851 TTATGCGACCGCCATCCG 60.280 61.111 12.08 0.00 41.09 4.18
3581 9158 2.787567 TTATGCGACCGCCATCCGA 61.788 57.895 12.08 0.00 41.09 4.55
3582 9159 2.299503 TTATGCGACCGCCATCCGAA 62.300 55.000 12.08 0.00 41.09 4.30
3583 9160 2.964438 TATGCGACCGCCATCCGAAC 62.964 60.000 12.08 0.00 41.09 3.95
3590 9167 2.046700 GCCATCCGAACCGGTTGA 60.047 61.111 27.87 17.58 46.01 3.18
3591 9168 1.673009 GCCATCCGAACCGGTTGAA 60.673 57.895 27.87 10.11 46.01 2.69
3592 9169 1.029947 GCCATCCGAACCGGTTGAAT 61.030 55.000 27.87 12.13 46.01 2.57
3593 9170 1.744456 GCCATCCGAACCGGTTGAATA 60.744 52.381 27.87 7.68 46.01 1.75
3594 9171 2.846193 CCATCCGAACCGGTTGAATAT 58.154 47.619 27.87 9.83 46.01 1.28
3595 9172 3.804411 GCCATCCGAACCGGTTGAATATA 60.804 47.826 27.87 4.15 46.01 0.86
3596 9173 3.744426 CCATCCGAACCGGTTGAATATAC 59.256 47.826 27.87 7.26 46.01 1.47
3597 9174 3.744426 CATCCGAACCGGTTGAATATACC 59.256 47.826 27.87 6.43 46.01 2.73
3598 9175 2.486918 CCGAACCGGTTGAATATACCC 58.513 52.381 27.87 5.62 42.73 3.69
3599 9176 2.486918 CGAACCGGTTGAATATACCCC 58.513 52.381 27.87 4.79 31.75 4.95
3600 9177 2.486918 GAACCGGTTGAATATACCCCG 58.513 52.381 27.87 0.00 38.39 5.73
3601 9178 1.499368 ACCGGTTGAATATACCCCGT 58.501 50.000 0.00 0.00 36.98 5.28
3602 9179 1.139455 ACCGGTTGAATATACCCCGTG 59.861 52.381 0.00 0.00 36.98 4.94
3603 9180 1.223187 CGGTTGAATATACCCCGTGC 58.777 55.000 0.00 0.00 34.10 5.34
3604 9181 1.202604 CGGTTGAATATACCCCGTGCT 60.203 52.381 0.00 0.00 34.10 4.40
3605 9182 2.036217 CGGTTGAATATACCCCGTGCTA 59.964 50.000 0.00 0.00 34.10 3.49
3606 9183 3.396560 GGTTGAATATACCCCGTGCTAC 58.603 50.000 0.00 0.00 0.00 3.58
3607 9184 3.396560 GTTGAATATACCCCGTGCTACC 58.603 50.000 0.00 0.00 0.00 3.18
3608 9185 2.680251 TGAATATACCCCGTGCTACCA 58.320 47.619 0.00 0.00 0.00 3.25
3609 9186 3.244582 TGAATATACCCCGTGCTACCAT 58.755 45.455 0.00 0.00 0.00 3.55
3610 9187 3.259876 TGAATATACCCCGTGCTACCATC 59.740 47.826 0.00 0.00 0.00 3.51
3611 9188 2.688902 TATACCCCGTGCTACCATCT 57.311 50.000 0.00 0.00 0.00 2.90
3612 9189 1.339097 ATACCCCGTGCTACCATCTC 58.661 55.000 0.00 0.00 0.00 2.75
3613 9190 0.757935 TACCCCGTGCTACCATCTCC 60.758 60.000 0.00 0.00 0.00 3.71
3614 9191 2.808206 CCCCGTGCTACCATCTCCC 61.808 68.421 0.00 0.00 0.00 4.30
3615 9192 2.063979 CCCGTGCTACCATCTCCCA 61.064 63.158 0.00 0.00 0.00 4.37
3616 9193 1.410850 CCCGTGCTACCATCTCCCAT 61.411 60.000 0.00 0.00 0.00 4.00
3617 9194 0.469917 CCGTGCTACCATCTCCCATT 59.530 55.000 0.00 0.00 0.00 3.16
3618 9195 1.586422 CGTGCTACCATCTCCCATTG 58.414 55.000 0.00 0.00 0.00 2.82
3619 9196 1.811558 CGTGCTACCATCTCCCATTGG 60.812 57.143 0.00 0.00 39.02 3.16
3621 9198 1.922447 TGCTACCATCTCCCATTGGTT 59.078 47.619 1.20 0.00 43.73 3.67
3622 9199 2.301346 GCTACCATCTCCCATTGGTTG 58.699 52.381 1.20 0.00 43.73 3.77
3623 9200 2.301346 CTACCATCTCCCATTGGTTGC 58.699 52.381 1.20 0.00 43.73 4.17
3624 9201 0.409092 ACCATCTCCCATTGGTTGCA 59.591 50.000 1.20 0.00 43.73 4.08
3625 9202 0.819582 CCATCTCCCATTGGTTGCAC 59.180 55.000 1.20 0.00 0.00 4.57
3626 9203 0.819582 CATCTCCCATTGGTTGCACC 59.180 55.000 1.20 0.00 39.22 5.01
3627 9204 0.324645 ATCTCCCATTGGTTGCACCC 60.325 55.000 1.20 0.00 37.50 4.61
3628 9205 1.228831 CTCCCATTGGTTGCACCCA 60.229 57.895 0.00 0.00 37.50 4.51
3629 9206 1.228831 TCCCATTGGTTGCACCCAG 60.229 57.895 2.20 0.00 37.50 4.45
3630 9207 1.533753 CCCATTGGTTGCACCCAGT 60.534 57.895 2.20 0.00 37.50 4.00
3631 9208 0.251564 CCCATTGGTTGCACCCAGTA 60.252 55.000 2.20 0.00 37.50 2.74
3632 9209 0.887933 CCATTGGTTGCACCCAGTAC 59.112 55.000 2.20 0.00 37.50 2.73
3633 9210 0.887933 CATTGGTTGCACCCAGTACC 59.112 55.000 2.20 0.00 37.50 3.34
3634 9211 0.251608 ATTGGTTGCACCCAGTACCC 60.252 55.000 2.20 0.00 37.50 3.69
3635 9212 1.646367 TTGGTTGCACCCAGTACCCA 61.646 55.000 2.20 0.00 37.50 4.51
3636 9213 1.151908 GGTTGCACCCAGTACCCAA 59.848 57.895 0.00 0.00 30.04 4.12
3637 9214 0.468400 GGTTGCACCCAGTACCCAAA 60.468 55.000 0.00 0.00 30.04 3.28
3638 9215 0.958822 GTTGCACCCAGTACCCAAAG 59.041 55.000 0.00 0.00 0.00 2.77
3639 9216 0.178975 TTGCACCCAGTACCCAAAGG 60.179 55.000 0.00 0.00 40.04 3.11
3640 9217 1.977009 GCACCCAGTACCCAAAGGC 60.977 63.158 0.00 0.00 36.11 4.35
3641 9218 1.767692 CACCCAGTACCCAAAGGCT 59.232 57.895 0.00 0.00 36.11 4.58
3642 9219 0.322546 CACCCAGTACCCAAAGGCTC 60.323 60.000 0.00 0.00 36.11 4.70
3643 9220 1.303282 CCCAGTACCCAAAGGCTCC 59.697 63.158 0.00 0.00 36.11 4.70
3644 9221 1.303282 CCAGTACCCAAAGGCTCCC 59.697 63.158 0.00 0.00 36.11 4.30
3645 9222 1.208165 CCAGTACCCAAAGGCTCCCT 61.208 60.000 0.00 0.00 36.11 4.20
3646 9223 0.035056 CAGTACCCAAAGGCTCCCTG 60.035 60.000 0.00 0.00 36.11 4.45
3647 9224 1.208165 AGTACCCAAAGGCTCCCTGG 61.208 60.000 3.80 3.80 36.11 4.45
3648 9225 1.162329 TACCCAAAGGCTCCCTGGA 59.838 57.895 10.86 0.00 36.11 3.86
3649 9226 0.914417 TACCCAAAGGCTCCCTGGAG 60.914 60.000 8.91 8.91 44.56 3.86
3650 9227 2.234296 CCCAAAGGCTCCCTGGAGT 61.234 63.158 14.45 0.00 43.70 3.85
3651 9228 1.301293 CCAAAGGCTCCCTGGAGTC 59.699 63.158 9.84 9.84 46.35 3.36
3656 9233 4.154347 GCTCCCTGGAGTCCGCAG 62.154 72.222 14.45 0.00 43.70 5.18
3657 9234 3.465403 CTCCCTGGAGTCCGCAGG 61.465 72.222 8.36 8.36 40.79 4.85
3670 9247 3.723554 CGCAGGAGTGAGTAAGGAC 57.276 57.895 0.00 0.00 0.00 3.85
3671 9248 0.173708 CGCAGGAGTGAGTAAGGACC 59.826 60.000 0.00 0.00 0.00 4.46
3672 9249 1.267121 GCAGGAGTGAGTAAGGACCA 58.733 55.000 0.00 0.00 0.00 4.02
3673 9250 1.066787 GCAGGAGTGAGTAAGGACCAC 60.067 57.143 0.00 0.00 0.00 4.16
3674 9251 2.248248 CAGGAGTGAGTAAGGACCACA 58.752 52.381 0.00 0.00 32.33 4.17
3675 9252 2.834549 CAGGAGTGAGTAAGGACCACAT 59.165 50.000 0.00 0.00 32.33 3.21
3676 9253 4.023980 CAGGAGTGAGTAAGGACCACATA 58.976 47.826 0.00 0.00 32.33 2.29
3677 9254 4.024670 AGGAGTGAGTAAGGACCACATAC 58.975 47.826 0.00 0.00 32.33 2.39
3678 9255 3.181489 GGAGTGAGTAAGGACCACATACG 60.181 52.174 0.00 0.00 32.33 3.06
3679 9256 2.758979 AGTGAGTAAGGACCACATACGG 59.241 50.000 0.00 0.00 32.33 4.02
3680 9257 2.756760 GTGAGTAAGGACCACATACGGA 59.243 50.000 0.00 0.00 31.06 4.69
3681 9258 3.383825 GTGAGTAAGGACCACATACGGAT 59.616 47.826 0.00 0.00 31.06 4.18
3682 9259 3.635373 TGAGTAAGGACCACATACGGATC 59.365 47.826 0.00 0.00 0.00 3.36
3683 9260 2.963782 AGTAAGGACCACATACGGATCC 59.036 50.000 0.00 0.00 0.00 3.36
3684 9261 1.874129 AAGGACCACATACGGATCCA 58.126 50.000 13.41 0.00 31.41 3.41
3685 9262 1.874129 AGGACCACATACGGATCCAA 58.126 50.000 13.41 0.00 31.41 3.53
3686 9263 1.762957 AGGACCACATACGGATCCAAG 59.237 52.381 13.41 0.00 31.41 3.61
3687 9264 1.583054 GACCACATACGGATCCAAGC 58.417 55.000 13.41 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 146 7.712205 GGAGTACTAGTTTGTTTTGGTGTTCTA 59.288 37.037 0.00 0.00 0.00 2.10
221 234 1.751924 GCTCAGATAGGAAGGACACGT 59.248 52.381 0.00 0.00 0.00 4.49
291 317 3.119602 CGTCTTCCAGTCGGATCAAACTA 60.120 47.826 0.00 0.00 42.41 2.24
301 327 1.135632 GGAGAGTTCGTCTTCCAGTCG 60.136 57.143 0.00 0.00 34.71 4.18
539 2646 8.050778 TCTATTTTATTGTCTTGCGGTGAAAT 57.949 30.769 0.00 0.00 0.00 2.17
677 2786 1.308998 CTGCGGAGGTTCTTGTGTTT 58.691 50.000 0.00 0.00 0.00 2.83
964 5935 1.663739 CACGACGGAGGAGGTGAAA 59.336 57.895 0.00 0.00 32.23 2.69
990 5961 6.272953 TCTCTCAGGATCATTCTCCTTCTA 57.727 41.667 0.00 0.00 43.33 2.10
1004 5975 0.326904 ATGGTGGCCATCTCTCAGGA 60.327 55.000 18.94 0.00 40.74 3.86
1032 6004 3.123621 CGATGTGTGTGCTAAAGAAGGTC 59.876 47.826 0.00 0.00 0.00 3.85
1085 6057 2.742589 GACTTTCTCGTTCCCCAATGTC 59.257 50.000 0.00 0.00 0.00 3.06
1154 6126 0.887836 GGGAAACACGAACCTGGGAC 60.888 60.000 0.00 0.00 0.00 4.46
1172 6144 7.012799 GCAAGAAAATTCAGAGAACTATAGGGG 59.987 40.741 4.43 0.00 0.00 4.79
1195 6167 5.423015 TGCAAACCTAAGAAAATTGTGCAA 58.577 33.333 0.00 0.00 36.60 4.08
1370 6369 2.196595 CCTTTCCCCTCCTATGTGACA 58.803 52.381 0.00 0.00 0.00 3.58
1379 6378 4.475381 AGAGAGTAAATTCCTTTCCCCTCC 59.525 45.833 0.00 0.00 0.00 4.30
1409 6410 3.773560 ACTAGCAGTCTCTCTTCACCTT 58.226 45.455 0.00 0.00 0.00 3.50
1478 6480 1.198713 AGGACATGAGTAGCACCTGG 58.801 55.000 0.00 0.00 0.00 4.45
1593 6595 2.498644 TGAGAGATCTCCACGTCAGT 57.501 50.000 19.30 0.00 42.20 3.41
1594 6596 4.383850 AATTGAGAGATCTCCACGTCAG 57.616 45.455 19.30 0.00 42.20 3.51
1595 6597 5.914898 TTAATTGAGAGATCTCCACGTCA 57.085 39.130 19.30 13.09 42.20 4.35
1597 6599 7.957002 ACATATTAATTGAGAGATCTCCACGT 58.043 34.615 19.30 0.00 42.20 4.49
1598 6600 9.566530 CTACATATTAATTGAGAGATCTCCACG 57.433 37.037 19.30 1.51 42.20 4.94
1599 6601 9.868277 CCTACATATTAATTGAGAGATCTCCAC 57.132 37.037 19.30 13.82 42.20 4.02
1601 6603 9.868277 CACCTACATATTAATTGAGAGATCTCC 57.132 37.037 19.30 11.17 42.20 3.71
1604 6606 9.429359 CCACACCTACATATTAATTGAGAGATC 57.571 37.037 0.00 0.00 0.00 2.75
1605 6607 9.159254 TCCACACCTACATATTAATTGAGAGAT 57.841 33.333 0.00 0.00 0.00 2.75
1606 6608 8.547481 TCCACACCTACATATTAATTGAGAGA 57.453 34.615 0.00 0.00 0.00 3.10
1607 6609 7.386299 GCTCCACACCTACATATTAATTGAGAG 59.614 40.741 0.00 0.00 0.00 3.20
1608 6610 7.071196 AGCTCCACACCTACATATTAATTGAGA 59.929 37.037 0.00 0.00 0.00 3.27
1609 6611 7.220030 AGCTCCACACCTACATATTAATTGAG 58.780 38.462 0.00 0.00 0.00 3.02
1611 6613 8.150945 AGTAGCTCCACACCTACATATTAATTG 58.849 37.037 0.00 0.00 37.09 2.32
1612 6614 8.263854 AGTAGCTCCACACCTACATATTAATT 57.736 34.615 0.00 0.00 37.09 1.40
1613 6615 7.309255 CGAGTAGCTCCACACCTACATATTAAT 60.309 40.741 0.00 0.00 37.09 1.40
1614 6616 6.016527 CGAGTAGCTCCACACCTACATATTAA 60.017 42.308 0.00 0.00 37.09 1.40
1615 6617 5.472478 CGAGTAGCTCCACACCTACATATTA 59.528 44.000 0.00 0.00 37.09 0.98
1616 6618 4.278669 CGAGTAGCTCCACACCTACATATT 59.721 45.833 0.00 0.00 37.09 1.28
1622 6729 1.408405 CCTCGAGTAGCTCCACACCTA 60.408 57.143 12.31 0.00 0.00 3.08
1648 6755 3.929955 TCTCCATGTGGCATAATGTCA 57.070 42.857 10.93 0.00 34.44 3.58
1663 6775 1.387781 ATGGCCATCCCCATCTCCA 60.388 57.895 14.09 0.00 41.75 3.86
1691 6805 4.373116 ACGTCGGCCGACAGCATT 62.373 61.111 46.26 27.38 46.50 3.56
1822 6936 1.142667 TGTCAATGAGCACCTTGTCCA 59.857 47.619 0.00 0.00 0.00 4.02
1825 6939 1.603802 CGTTGTCAATGAGCACCTTGT 59.396 47.619 0.00 0.00 0.00 3.16
1838 6952 0.036022 TCATGCCACCATCGTTGTCA 59.964 50.000 0.00 0.00 0.00 3.58
1843 6957 3.085208 GTGATCATGCCACCATCGT 57.915 52.632 0.00 0.00 0.00 3.73
1857 6971 2.489329 CGATTTTGCTGAGGTTGGTGAT 59.511 45.455 0.00 0.00 0.00 3.06
1864 6978 2.290896 TGGGATTCGATTTTGCTGAGGT 60.291 45.455 0.00 0.00 0.00 3.85
1986 7100 1.803334 GTGGTCGACATGCCAAACTA 58.197 50.000 18.91 0.00 36.41 2.24
2097 7212 0.818938 TAAGCGATGCTTCGTGGGTA 59.181 50.000 21.31 7.63 46.77 3.69
2115 7231 5.088730 TGCAGGAAACTAACTAACCCTCTA 58.911 41.667 0.00 0.00 40.21 2.43
2229 7345 2.093447 GTCTTGCAGCCTCCTTAGCTTA 60.093 50.000 0.00 0.00 38.95 3.09
2231 7347 0.251634 GTCTTGCAGCCTCCTTAGCT 59.748 55.000 0.00 0.00 42.70 3.32
2457 7966 6.940298 CCTACCAAGGTTCTGAATTTCTGTAA 59.060 38.462 0.00 0.00 38.19 2.41
2510 8019 4.873817 CACAAATGCAATTCTGAAGTCCA 58.126 39.130 0.00 0.00 33.67 4.02
2595 8113 3.475575 TGTCTGATGCAGTTGTTTGCTA 58.524 40.909 0.00 0.00 44.38 3.49
2607 8125 6.040391 AGGTACTCTAGATCTTTGTCTGATGC 59.960 42.308 0.00 0.00 0.00 3.91
2609 8127 6.040391 GCAGGTACTCTAGATCTTTGTCTGAT 59.960 42.308 0.00 0.00 34.60 2.90
2624 8142 3.894427 CACCAGATATGAGCAGGTACTCT 59.106 47.826 0.00 0.00 34.60 3.24
2871 8400 3.105937 GGTTGAAGAACAAACAAGTCGC 58.894 45.455 0.00 0.00 44.72 5.19
2919 8448 3.202151 ACCACATACTTAACAGGGGATGG 59.798 47.826 0.00 0.00 0.00 3.51
2920 8449 4.503714 ACCACATACTTAACAGGGGATG 57.496 45.455 0.00 0.00 0.00 3.51
2921 8450 4.291249 ACAACCACATACTTAACAGGGGAT 59.709 41.667 0.00 0.00 0.00 3.85
3032 8563 5.432885 AGGTACAAGCACACATTTAACAC 57.567 39.130 0.00 0.00 0.00 3.32
3056 8587 5.356751 TGGAAGTGCGTGATTAATTTAGCAT 59.643 36.000 13.21 2.40 36.96 3.79
3071 8602 1.139163 GCAACCAAAATGGAAGTGCG 58.861 50.000 2.85 0.00 40.96 5.34
3092 8623 6.902416 TCCAGATATGATTCACCCCAATTTTT 59.098 34.615 0.00 0.00 0.00 1.94
3103 8634 7.248743 TCACATATGCTCCAGATATGATTCA 57.751 36.000 1.58 0.00 37.27 2.57
3111 8642 4.458397 CCAAGTTCACATATGCTCCAGAT 58.542 43.478 1.58 0.00 0.00 2.90
3112 8643 3.877559 CCAAGTTCACATATGCTCCAGA 58.122 45.455 1.58 0.00 0.00 3.86
3372 8949 1.270041 GCACGCCTCCATTTCCAAAAA 60.270 47.619 0.00 0.00 0.00 1.94
3373 8950 0.316841 GCACGCCTCCATTTCCAAAA 59.683 50.000 0.00 0.00 0.00 2.44
3374 8951 1.531739 GGCACGCCTCCATTTCCAAA 61.532 55.000 0.00 0.00 0.00 3.28
3375 8952 1.976474 GGCACGCCTCCATTTCCAA 60.976 57.895 0.00 0.00 0.00 3.53
3376 8953 2.361104 GGCACGCCTCCATTTCCA 60.361 61.111 0.00 0.00 0.00 3.53
3377 8954 3.140814 GGGCACGCCTCCATTTCC 61.141 66.667 8.20 0.00 36.10 3.13
3378 8955 2.044946 AGGGCACGCCTCCATTTC 60.045 61.111 8.20 0.00 36.10 2.17
3379 8956 2.044946 GAGGGCACGCCTCCATTT 60.045 61.111 8.20 0.00 36.10 2.32
3380 8957 3.011517 AGAGGGCACGCCTCCATT 61.012 61.111 8.20 0.00 35.11 3.16
3381 8958 3.790437 CAGAGGGCACGCCTCCAT 61.790 66.667 8.20 0.00 35.11 3.41
3389 8966 7.736069 CATTATTATGAAGAGGCAGAGGGCAC 61.736 46.154 0.00 0.00 37.93 5.01
3390 8967 5.746952 CATTATTATGAAGAGGCAGAGGGCA 60.747 44.000 0.00 0.00 37.93 5.36
3391 8968 2.947127 ATTATGAAGAGGCAGAGGGC 57.053 50.000 0.00 0.00 43.74 5.19
3392 8969 6.119240 TCATTATTATGAAGAGGCAGAGGG 57.881 41.667 0.00 0.00 37.83 4.30
3393 8970 6.093771 GCATCATTATTATGAAGAGGCAGAGG 59.906 42.308 0.00 0.00 43.67 3.69
3394 8971 6.653740 TGCATCATTATTATGAAGAGGCAGAG 59.346 38.462 0.00 0.00 43.67 3.35
3395 8972 6.536447 TGCATCATTATTATGAAGAGGCAGA 58.464 36.000 0.00 0.00 43.67 4.26
3396 8973 6.812879 TGCATCATTATTATGAAGAGGCAG 57.187 37.500 0.00 0.00 43.67 4.85
3397 8974 6.349860 GCATGCATCATTATTATGAAGAGGCA 60.350 38.462 14.21 4.28 43.67 4.75
3398 8975 6.034591 GCATGCATCATTATTATGAAGAGGC 58.965 40.000 14.21 2.11 43.67 4.70
3399 8976 7.153217 TGCATGCATCATTATTATGAAGAGG 57.847 36.000 18.46 0.00 43.67 3.69
3415 8992 8.426489 ACTTTTTAATAAGATGGATGCATGCAT 58.574 29.630 32.66 32.66 41.76 3.96
3416 8993 7.784037 ACTTTTTAATAAGATGGATGCATGCA 58.216 30.769 25.04 25.04 0.00 3.96
3417 8994 8.139989 AGACTTTTTAATAAGATGGATGCATGC 58.860 33.333 11.82 11.82 0.00 4.06
3418 8995 9.674824 GAGACTTTTTAATAAGATGGATGCATG 57.325 33.333 2.46 0.00 0.00 4.06
3419 8996 8.562892 CGAGACTTTTTAATAAGATGGATGCAT 58.437 33.333 11.97 0.00 0.00 3.96
3420 8997 7.768582 TCGAGACTTTTTAATAAGATGGATGCA 59.231 33.333 11.97 0.00 0.00 3.96
3421 8998 8.142994 TCGAGACTTTTTAATAAGATGGATGC 57.857 34.615 11.97 0.00 0.00 3.91
3423 9000 9.892130 ACTTCGAGACTTTTTAATAAGATGGAT 57.108 29.630 11.97 0.00 0.00 3.41
3428 9005 9.813446 GGGATACTTCGAGACTTTTTAATAAGA 57.187 33.333 11.97 0.00 0.00 2.10
3429 9006 9.595823 TGGGATACTTCGAGACTTTTTAATAAG 57.404 33.333 4.33 4.33 0.00 1.73
3430 9007 9.947433 TTGGGATACTTCGAGACTTTTTAATAA 57.053 29.630 0.00 0.00 0.00 1.40
3431 9008 9.947433 TTTGGGATACTTCGAGACTTTTTAATA 57.053 29.630 0.00 0.00 0.00 0.98
3432 9009 8.857694 TTTGGGATACTTCGAGACTTTTTAAT 57.142 30.769 0.00 0.00 0.00 1.40
3433 9010 7.935210 ACTTTGGGATACTTCGAGACTTTTTAA 59.065 33.333 0.00 0.00 0.00 1.52
3434 9011 7.447594 ACTTTGGGATACTTCGAGACTTTTTA 58.552 34.615 0.00 0.00 0.00 1.52
3435 9012 6.296803 ACTTTGGGATACTTCGAGACTTTTT 58.703 36.000 0.00 0.00 0.00 1.94
3436 9013 5.866207 ACTTTGGGATACTTCGAGACTTTT 58.134 37.500 0.00 0.00 0.00 2.27
3437 9014 5.011738 TGACTTTGGGATACTTCGAGACTTT 59.988 40.000 0.00 0.00 0.00 2.66
3438 9015 4.527038 TGACTTTGGGATACTTCGAGACTT 59.473 41.667 0.00 0.00 0.00 3.01
3439 9016 4.087182 TGACTTTGGGATACTTCGAGACT 58.913 43.478 0.00 0.00 0.00 3.24
3440 9017 4.451629 TGACTTTGGGATACTTCGAGAC 57.548 45.455 0.00 0.00 0.00 3.36
3441 9018 4.709886 TCATGACTTTGGGATACTTCGAGA 59.290 41.667 0.00 0.00 0.00 4.04
3442 9019 5.011090 TCATGACTTTGGGATACTTCGAG 57.989 43.478 0.00 0.00 0.00 4.04
3443 9020 5.414789 TTCATGACTTTGGGATACTTCGA 57.585 39.130 0.00 0.00 0.00 3.71
3444 9021 4.572389 CCTTCATGACTTTGGGATACTTCG 59.428 45.833 0.00 0.00 0.00 3.79
3445 9022 5.501156 ACCTTCATGACTTTGGGATACTTC 58.499 41.667 0.00 0.00 0.00 3.01
3446 9023 5.520748 ACCTTCATGACTTTGGGATACTT 57.479 39.130 0.00 0.00 0.00 2.24
3447 9024 6.831664 ATACCTTCATGACTTTGGGATACT 57.168 37.500 0.00 0.00 0.00 2.12
3448 9025 7.990886 TGTAATACCTTCATGACTTTGGGATAC 59.009 37.037 0.00 2.68 0.00 2.24
3449 9026 8.096621 TGTAATACCTTCATGACTTTGGGATA 57.903 34.615 0.00 0.00 0.00 2.59
3450 9027 6.969043 TGTAATACCTTCATGACTTTGGGAT 58.031 36.000 0.00 0.00 0.00 3.85
3451 9028 6.381498 TGTAATACCTTCATGACTTTGGGA 57.619 37.500 0.00 0.00 0.00 4.37
3452 9029 5.066505 GCTGTAATACCTTCATGACTTTGGG 59.933 44.000 0.00 0.00 0.00 4.12
3453 9030 5.882557 AGCTGTAATACCTTCATGACTTTGG 59.117 40.000 0.00 0.00 0.00 3.28
3454 9031 6.237942 CGAGCTGTAATACCTTCATGACTTTG 60.238 42.308 0.00 0.00 0.00 2.77
3455 9032 5.812642 CGAGCTGTAATACCTTCATGACTTT 59.187 40.000 0.00 0.00 0.00 2.66
3456 9033 5.352284 CGAGCTGTAATACCTTCATGACTT 58.648 41.667 0.00 0.00 0.00 3.01
3457 9034 4.737946 GCGAGCTGTAATACCTTCATGACT 60.738 45.833 0.00 0.00 0.00 3.41
3458 9035 3.491267 GCGAGCTGTAATACCTTCATGAC 59.509 47.826 0.00 0.00 0.00 3.06
3459 9036 3.132111 TGCGAGCTGTAATACCTTCATGA 59.868 43.478 0.00 0.00 0.00 3.07
3460 9037 3.457234 TGCGAGCTGTAATACCTTCATG 58.543 45.455 0.00 0.00 0.00 3.07
3461 9038 3.819564 TGCGAGCTGTAATACCTTCAT 57.180 42.857 0.00 0.00 0.00 2.57
3462 9039 3.521560 CTTGCGAGCTGTAATACCTTCA 58.478 45.455 0.00 0.00 0.00 3.02
3463 9040 2.285488 GCTTGCGAGCTGTAATACCTTC 59.715 50.000 19.25 0.00 45.65 3.46
3464 9041 2.280628 GCTTGCGAGCTGTAATACCTT 58.719 47.619 19.25 0.00 45.65 3.50
3465 9042 1.802880 CGCTTGCGAGCTGTAATACCT 60.803 52.381 23.42 0.00 46.96 3.08
3466 9043 0.577269 CGCTTGCGAGCTGTAATACC 59.423 55.000 23.42 0.00 46.96 2.73
3467 9044 0.577269 CCGCTTGCGAGCTGTAATAC 59.423 55.000 23.42 0.00 46.96 1.89
3468 9045 0.458260 TCCGCTTGCGAGCTGTAATA 59.542 50.000 23.42 0.00 46.96 0.98
3469 9046 0.807667 CTCCGCTTGCGAGCTGTAAT 60.808 55.000 23.42 0.00 46.96 1.89
3470 9047 1.446099 CTCCGCTTGCGAGCTGTAA 60.446 57.895 23.42 5.45 46.96 2.41
3471 9048 2.181777 CTCCGCTTGCGAGCTGTA 59.818 61.111 23.42 7.85 46.96 2.74
3476 9053 1.154338 CTTTTGCTCCGCTTGCGAG 60.154 57.895 16.99 12.25 0.00 5.03
3477 9054 2.945984 CTTTTGCTCCGCTTGCGA 59.054 55.556 16.99 2.09 0.00 5.10
3478 9055 2.802414 GCTTTTGCTCCGCTTGCG 60.802 61.111 8.14 8.14 43.35 4.85
3501 9078 9.108284 GCCTTACCGGTTGTACTTATTTATTTA 57.892 33.333 15.04 0.00 34.25 1.40
3502 9079 7.611079 TGCCTTACCGGTTGTACTTATTTATTT 59.389 33.333 15.04 0.00 34.25 1.40
3503 9080 7.111466 TGCCTTACCGGTTGTACTTATTTATT 58.889 34.615 15.04 0.00 34.25 1.40
3504 9081 6.652053 TGCCTTACCGGTTGTACTTATTTAT 58.348 36.000 15.04 0.00 34.25 1.40
3505 9082 6.047511 TGCCTTACCGGTTGTACTTATTTA 57.952 37.500 15.04 0.00 34.25 1.40
3506 9083 4.909001 TGCCTTACCGGTTGTACTTATTT 58.091 39.130 15.04 0.00 34.25 1.40
3507 9084 4.556592 TGCCTTACCGGTTGTACTTATT 57.443 40.909 15.04 0.00 34.25 1.40
3508 9085 4.556592 TTGCCTTACCGGTTGTACTTAT 57.443 40.909 15.04 0.00 34.25 1.73
3509 9086 4.348863 TTTGCCTTACCGGTTGTACTTA 57.651 40.909 15.04 0.00 34.25 2.24
3510 9087 2.934886 TTGCCTTACCGGTTGTACTT 57.065 45.000 15.04 0.00 34.25 2.24
3511 9088 2.934886 TTTGCCTTACCGGTTGTACT 57.065 45.000 15.04 0.00 34.25 2.73
3512 9089 3.986442 TTTTTGCCTTACCGGTTGTAC 57.014 42.857 15.04 0.65 34.25 2.90
3537 9114 5.044402 AGGATAGGAGTCTAGGGAGCTTATC 60.044 48.000 0.00 0.00 0.00 1.75
3538 9115 4.861454 AGGATAGGAGTCTAGGGAGCTTAT 59.139 45.833 0.00 0.00 0.00 1.73
3539 9116 4.043561 CAGGATAGGAGTCTAGGGAGCTTA 59.956 50.000 0.00 0.00 0.00 3.09
3540 9117 3.068237 AGGATAGGAGTCTAGGGAGCTT 58.932 50.000 0.00 0.00 0.00 3.74
3541 9118 2.378547 CAGGATAGGAGTCTAGGGAGCT 59.621 54.545 0.00 0.00 0.00 4.09
3542 9119 2.109304 ACAGGATAGGAGTCTAGGGAGC 59.891 54.545 0.00 0.00 0.00 4.70
3543 9120 4.463050 AACAGGATAGGAGTCTAGGGAG 57.537 50.000 0.00 0.00 0.00 4.30
3544 9121 5.752332 GCATAACAGGATAGGAGTCTAGGGA 60.752 48.000 0.00 0.00 0.00 4.20
3545 9122 4.464597 GCATAACAGGATAGGAGTCTAGGG 59.535 50.000 0.00 0.00 0.00 3.53
3546 9123 4.156922 CGCATAACAGGATAGGAGTCTAGG 59.843 50.000 0.00 0.00 0.00 3.02
3547 9124 5.004448 TCGCATAACAGGATAGGAGTCTAG 58.996 45.833 0.00 0.00 0.00 2.43
3548 9125 4.760715 GTCGCATAACAGGATAGGAGTCTA 59.239 45.833 0.00 0.00 0.00 2.59
3549 9126 3.570550 GTCGCATAACAGGATAGGAGTCT 59.429 47.826 0.00 0.00 0.00 3.24
3550 9127 3.305471 GGTCGCATAACAGGATAGGAGTC 60.305 52.174 0.00 0.00 0.00 3.36
3551 9128 2.628657 GGTCGCATAACAGGATAGGAGT 59.371 50.000 0.00 0.00 0.00 3.85
3552 9129 2.351835 CGGTCGCATAACAGGATAGGAG 60.352 54.545 0.00 0.00 0.00 3.69
3553 9130 1.611977 CGGTCGCATAACAGGATAGGA 59.388 52.381 0.00 0.00 0.00 2.94
3554 9131 1.935300 GCGGTCGCATAACAGGATAGG 60.935 57.143 10.67 0.00 41.49 2.57
3555 9132 1.419374 GCGGTCGCATAACAGGATAG 58.581 55.000 10.67 0.00 41.49 2.08
3556 9133 0.032952 GGCGGTCGCATAACAGGATA 59.967 55.000 17.21 0.00 44.11 2.59
3557 9134 1.227556 GGCGGTCGCATAACAGGAT 60.228 57.895 17.21 0.00 44.11 3.24
3558 9135 1.966901 ATGGCGGTCGCATAACAGGA 61.967 55.000 17.21 0.00 44.11 3.86
3559 9136 1.498865 GATGGCGGTCGCATAACAGG 61.499 60.000 17.21 0.00 44.11 4.00
3560 9137 1.498865 GGATGGCGGTCGCATAACAG 61.499 60.000 17.21 0.00 44.11 3.16
3561 9138 1.522806 GGATGGCGGTCGCATAACA 60.523 57.895 17.21 6.12 44.11 2.41
3562 9139 2.594962 CGGATGGCGGTCGCATAAC 61.595 63.158 17.21 4.44 44.11 1.89
3563 9140 2.279851 CGGATGGCGGTCGCATAA 60.280 61.111 17.21 2.61 44.11 1.90
3564 9141 2.787567 TTCGGATGGCGGTCGCATA 61.788 57.895 17.21 5.89 44.11 3.14
3565 9142 4.155733 TTCGGATGGCGGTCGCAT 62.156 61.111 17.21 8.55 44.11 4.73
3579 9156 2.486918 GGGGTATATTCAACCGGTTCG 58.513 52.381 19.24 13.41 37.93 3.95
3580 9157 2.486918 CGGGGTATATTCAACCGGTTC 58.513 52.381 19.24 3.86 40.79 3.62
3581 9158 2.625695 CGGGGTATATTCAACCGGTT 57.374 50.000 15.86 15.86 40.79 4.44
3585 9162 2.632987 AGCACGGGGTATATTCAACC 57.367 50.000 0.00 0.00 36.19 3.77
3586 9163 3.181463 TGGTAGCACGGGGTATATTCAAC 60.181 47.826 0.00 0.00 0.00 3.18
3587 9164 3.039743 TGGTAGCACGGGGTATATTCAA 58.960 45.455 0.00 0.00 0.00 2.69
3588 9165 2.680251 TGGTAGCACGGGGTATATTCA 58.320 47.619 0.00 0.00 0.00 2.57
3589 9166 3.514309 AGATGGTAGCACGGGGTATATTC 59.486 47.826 0.00 0.00 0.00 1.75
3590 9167 3.514309 GAGATGGTAGCACGGGGTATATT 59.486 47.826 0.00 0.00 0.00 1.28
3591 9168 3.097614 GAGATGGTAGCACGGGGTATAT 58.902 50.000 0.00 0.00 0.00 0.86
3592 9169 2.522185 GAGATGGTAGCACGGGGTATA 58.478 52.381 0.00 0.00 0.00 1.47
3593 9170 1.339097 GAGATGGTAGCACGGGGTAT 58.661 55.000 0.00 0.00 0.00 2.73
3594 9171 0.757935 GGAGATGGTAGCACGGGGTA 60.758 60.000 0.00 0.00 0.00 3.69
3595 9172 2.064581 GGAGATGGTAGCACGGGGT 61.065 63.158 0.00 0.00 0.00 4.95
3596 9173 2.808206 GGGAGATGGTAGCACGGGG 61.808 68.421 0.00 0.00 0.00 5.73
3597 9174 1.410850 ATGGGAGATGGTAGCACGGG 61.411 60.000 0.00 0.00 0.00 5.28
3598 9175 0.469917 AATGGGAGATGGTAGCACGG 59.530 55.000 0.00 0.00 0.00 4.94
3599 9176 1.586422 CAATGGGAGATGGTAGCACG 58.414 55.000 0.00 0.00 0.00 5.34
3600 9177 1.972872 CCAATGGGAGATGGTAGCAC 58.027 55.000 0.00 0.00 35.59 4.40
3606 9183 0.819582 GTGCAACCAATGGGAGATGG 59.180 55.000 3.55 0.00 42.60 3.51
3619 9196 0.958822 CTTTGGGTACTGGGTGCAAC 59.041 55.000 0.00 0.00 0.00 4.17
3620 9197 0.178975 CCTTTGGGTACTGGGTGCAA 60.179 55.000 0.00 0.00 0.00 4.08
3621 9198 1.458486 CCTTTGGGTACTGGGTGCA 59.542 57.895 0.00 0.00 0.00 4.57
3622 9199 1.977009 GCCTTTGGGTACTGGGTGC 60.977 63.158 0.00 0.00 34.45 5.01
3623 9200 0.322546 GAGCCTTTGGGTACTGGGTG 60.323 60.000 0.00 0.00 31.55 4.61
3624 9201 1.498176 GGAGCCTTTGGGTACTGGGT 61.498 60.000 0.00 0.00 31.55 4.51
3625 9202 1.303282 GGAGCCTTTGGGTACTGGG 59.697 63.158 0.00 0.00 31.55 4.45
3626 9203 1.208165 AGGGAGCCTTTGGGTACTGG 61.208 60.000 0.00 0.00 33.90 4.00
3627 9204 0.035056 CAGGGAGCCTTTGGGTACTG 60.035 60.000 0.00 2.53 33.90 2.74
3628 9205 1.208165 CCAGGGAGCCTTTGGGTACT 61.208 60.000 0.00 0.00 33.90 2.73
3629 9206 1.205460 TCCAGGGAGCCTTTGGGTAC 61.205 60.000 9.60 0.00 31.55 3.34
3630 9207 0.914417 CTCCAGGGAGCCTTTGGGTA 60.914 60.000 1.73 0.00 35.31 3.69
3631 9208 2.121506 TCCAGGGAGCCTTTGGGT 60.122 61.111 9.60 0.00 35.46 4.51
3632 9209 2.203549 GACTCCAGGGAGCCTTTGGG 62.204 65.000 15.18 0.00 45.54 4.12
3633 9210 1.301293 GACTCCAGGGAGCCTTTGG 59.699 63.158 15.18 4.80 45.54 3.28
3634 9211 1.301293 GGACTCCAGGGAGCCTTTG 59.699 63.158 15.18 0.00 45.54 2.77
3635 9212 2.294078 CGGACTCCAGGGAGCCTTT 61.294 63.158 15.18 0.00 45.54 3.11
3636 9213 2.685380 CGGACTCCAGGGAGCCTT 60.685 66.667 15.18 0.00 45.54 4.35
3639 9216 4.154347 CTGCGGACTCCAGGGAGC 62.154 72.222 15.18 8.03 45.54 4.70
3640 9217 3.465403 CCTGCGGACTCCAGGGAG 61.465 72.222 13.74 13.74 44.87 4.30
3644 9221 1.943116 CTCACTCCTGCGGACTCCAG 61.943 65.000 0.00 0.00 0.00 3.86
3645 9222 1.979155 CTCACTCCTGCGGACTCCA 60.979 63.158 0.00 0.00 0.00 3.86
3646 9223 0.680280 TACTCACTCCTGCGGACTCC 60.680 60.000 0.00 0.00 0.00 3.85
3647 9224 1.133407 CTTACTCACTCCTGCGGACTC 59.867 57.143 0.00 0.00 0.00 3.36
3648 9225 1.178276 CTTACTCACTCCTGCGGACT 58.822 55.000 0.00 0.00 0.00 3.85
3649 9226 0.173708 CCTTACTCACTCCTGCGGAC 59.826 60.000 0.00 0.00 0.00 4.79
3650 9227 0.039180 TCCTTACTCACTCCTGCGGA 59.961 55.000 0.00 0.00 0.00 5.54
3651 9228 0.173708 GTCCTTACTCACTCCTGCGG 59.826 60.000 0.00 0.00 0.00 5.69
3652 9229 0.173708 GGTCCTTACTCACTCCTGCG 59.826 60.000 0.00 0.00 0.00 5.18
3653 9230 1.066787 GTGGTCCTTACTCACTCCTGC 60.067 57.143 0.00 0.00 0.00 4.85
3654 9231 2.248248 TGTGGTCCTTACTCACTCCTG 58.752 52.381 0.00 0.00 31.73 3.86
3655 9232 2.696526 TGTGGTCCTTACTCACTCCT 57.303 50.000 0.00 0.00 31.73 3.69
3656 9233 3.181489 CGTATGTGGTCCTTACTCACTCC 60.181 52.174 0.00 0.00 31.73 3.85
3657 9234 3.181489 CCGTATGTGGTCCTTACTCACTC 60.181 52.174 0.00 0.00 31.73 3.51
3658 9235 2.758979 CCGTATGTGGTCCTTACTCACT 59.241 50.000 0.00 0.00 31.73 3.41
3659 9236 2.756760 TCCGTATGTGGTCCTTACTCAC 59.243 50.000 0.00 0.00 0.00 3.51
3660 9237 3.090210 TCCGTATGTGGTCCTTACTCA 57.910 47.619 0.00 0.00 0.00 3.41
3661 9238 3.005578 GGATCCGTATGTGGTCCTTACTC 59.994 52.174 0.00 0.00 0.00 2.59
3662 9239 2.963782 GGATCCGTATGTGGTCCTTACT 59.036 50.000 0.00 0.00 0.00 2.24
3663 9240 2.696707 TGGATCCGTATGTGGTCCTTAC 59.303 50.000 7.39 0.00 33.17 2.34
3664 9241 3.035055 TGGATCCGTATGTGGTCCTTA 57.965 47.619 7.39 0.00 33.17 2.69
3665 9242 1.874129 TGGATCCGTATGTGGTCCTT 58.126 50.000 7.39 0.00 33.17 3.36
3666 9243 1.762957 CTTGGATCCGTATGTGGTCCT 59.237 52.381 7.39 0.00 33.17 3.85
3667 9244 1.810412 GCTTGGATCCGTATGTGGTCC 60.810 57.143 7.39 0.00 32.83 4.46
3668 9245 1.583054 GCTTGGATCCGTATGTGGTC 58.417 55.000 7.39 0.00 0.00 4.02
3669 9246 3.780624 GCTTGGATCCGTATGTGGT 57.219 52.632 7.39 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.