Multiple sequence alignment - TraesCS2A01G227000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G227000 chr2A 100.000 7167 0 0 1 7167 236833332 236840498 0.000000e+00 13236.0
1 TraesCS2A01G227000 chr2A 95.905 928 28 2 6250 7167 319017051 319017978 0.000000e+00 1495.0
2 TraesCS2A01G227000 chr2A 90.512 664 62 1 6505 7167 711744389 711743726 0.000000e+00 876.0
3 TraesCS2A01G227000 chr2A 98.936 94 0 1 5917 6010 693209887 693209979 4.450000e-37 167.0
4 TraesCS2A01G227000 chr2A 80.198 202 35 4 3976 4172 161954840 161954639 5.790000e-31 147.0
5 TraesCS2A01G227000 chr2A 94.915 59 1 2 6195 6253 382625058 382625114 2.750000e-14 91.6
6 TraesCS2A01G227000 chr2D 97.032 5087 87 18 916 5944 255622059 255616979 0.000000e+00 8499.0
7 TraesCS2A01G227000 chr2D 96.474 397 11 2 1 396 255682486 255682092 0.000000e+00 652.0
8 TraesCS2A01G227000 chr2D 98.016 252 5 0 486 737 255682087 255681836 8.540000e-119 438.0
9 TraesCS2A01G227000 chr2D 96.759 216 7 0 5989 6204 255616857 255616642 1.900000e-95 361.0
10 TraesCS2A01G227000 chr2D 93.443 61 3 1 5013 5073 461076358 461076417 9.900000e-14 89.8
11 TraesCS2A01G227000 chr2D 96.000 50 2 0 847 896 255624524 255624475 1.660000e-11 82.4
12 TraesCS2A01G227000 chr2B 94.141 3294 77 44 426 3661 280482589 280485824 0.000000e+00 4907.0
13 TraesCS2A01G227000 chr2B 95.989 698 15 2 4119 4805 280493557 280494252 0.000000e+00 1122.0
14 TraesCS2A01G227000 chr2B 95.000 620 22 5 5314 5927 280495794 280496410 0.000000e+00 965.0
15 TraesCS2A01G227000 chr2B 92.578 512 15 12 3645 4136 280492692 280493200 0.000000e+00 713.0
16 TraesCS2A01G227000 chr2B 93.830 389 15 5 1 387 280475889 280476270 1.730000e-160 577.0
17 TraesCS2A01G227000 chr2B 97.329 337 9 0 4981 5317 280495377 280495713 2.240000e-159 573.0
18 TraesCS2A01G227000 chr2B 96.311 244 6 2 4791 5034 280495130 280495370 1.450000e-106 398.0
19 TraesCS2A01G227000 chr2B 91.912 136 9 1 6069 6204 280497080 280497213 9.490000e-44 189.0
20 TraesCS2A01G227000 chr2B 91.912 136 9 1 6069 6204 280497682 280497815 9.490000e-44 189.0
21 TraesCS2A01G227000 chr2B 97.895 95 2 0 5923 6017 785216423 785216329 1.600000e-36 165.0
22 TraesCS2A01G227000 chr2B 90.625 64 4 2 6190 6253 38339726 38339787 4.610000e-12 84.2
23 TraesCS2A01G227000 chr4A 95.797 928 28 3 6250 7167 137171652 137172578 0.000000e+00 1487.0
24 TraesCS2A01G227000 chr4A 85.681 866 90 6 6311 7167 733003848 733003008 0.000000e+00 881.0
25 TraesCS2A01G227000 chr4A 85.486 875 93 6 6302 7167 733003964 733004813 0.000000e+00 881.0
26 TraesCS2A01G227000 chr4A 94.828 58 3 0 6196 6253 137171543 137171600 2.750000e-14 91.6
27 TraesCS2A01G227000 chr4A 92.982 57 3 1 5013 5069 211051169 211051114 1.660000e-11 82.4
28 TraesCS2A01G227000 chr5A 95.788 926 29 2 6252 7167 485378965 485378040 0.000000e+00 1485.0
29 TraesCS2A01G227000 chr5A 95.259 928 34 2 6250 7167 10834808 10833881 0.000000e+00 1461.0
30 TraesCS2A01G227000 chr5A 96.364 55 1 1 6199 6253 47959557 47959610 9.900000e-14 89.8
31 TraesCS2A01G227000 chr5A 96.364 55 1 1 6199 6253 476672296 476672243 9.900000e-14 89.8
32 TraesCS2A01G227000 chr7A 95.464 926 32 2 6252 7167 276127740 276128665 0.000000e+00 1469.0
33 TraesCS2A01G227000 chr7A 91.046 927 59 13 6250 7167 40788670 40787759 0.000000e+00 1230.0
34 TraesCS2A01G227000 chr7A 95.345 666 20 3 6250 6905 41434989 41434325 0.000000e+00 1048.0
35 TraesCS2A01G227000 chr7A 94.915 59 3 0 6195 6253 686660036 686660094 7.660000e-15 93.5
36 TraesCS2A01G227000 chr6A 95.469 927 31 3 6250 7167 23490949 23491873 0.000000e+00 1469.0
37 TraesCS2A01G227000 chr6A 94.289 823 43 4 6346 7167 6439213 6440032 0.000000e+00 1256.0
38 TraesCS2A01G227000 chr1A 95.259 928 34 2 6250 7167 11560890 11561817 0.000000e+00 1461.0
39 TraesCS2A01G227000 chr1A 93.450 916 28 10 6262 7167 562897783 562896890 0.000000e+00 1330.0
40 TraesCS2A01G227000 chr1A 93.846 65 3 1 5013 5077 66895587 66895524 5.920000e-16 97.1
41 TraesCS2A01G227000 chr7B 92.654 599 44 0 6569 7167 541235080 541234482 0.000000e+00 863.0
42 TraesCS2A01G227000 chr7B 93.519 108 5 2 5906 6011 709505018 709504911 7.440000e-35 159.0
43 TraesCS2A01G227000 chr7B 96.364 55 1 1 6199 6253 706157409 706157462 9.900000e-14 89.8
44 TraesCS2A01G227000 chr5B 85.836 586 78 2 6587 7167 56689697 56689112 1.020000e-172 617.0
45 TraesCS2A01G227000 chr5B 82.667 225 25 10 3964 4175 485912058 485912281 3.410000e-43 187.0
46 TraesCS2A01G227000 chr5B 79.798 198 36 4 3979 4173 284003711 284003515 2.700000e-29 141.0
47 TraesCS2A01G227000 chr5B 100.000 28 0 0 1 28 699434885 699434858 1.300000e-02 52.8
48 TraesCS2A01G227000 chr4D 82.564 195 30 4 3981 4173 294346465 294346273 1.240000e-37 169.0
49 TraesCS2A01G227000 chr4D 92.373 118 6 3 5911 6026 58583611 58583495 1.600000e-36 165.0
50 TraesCS2A01G227000 chr4D 97.917 96 1 1 5918 6012 216743556 216743461 1.600000e-36 165.0
51 TraesCS2A01G227000 chr4D 79.227 207 38 2 3976 4177 452549865 452549659 9.690000e-29 139.0
52 TraesCS2A01G227000 chr4D 80.124 161 20 11 3979 4130 22952581 22952424 7.600000e-20 110.0
53 TraesCS2A01G227000 chr4D 86.667 90 11 1 3976 4064 486932222 486932133 1.650000e-16 99.0
54 TraesCS2A01G227000 chr4D 94.737 57 2 1 5013 5069 284782711 284782656 3.560000e-13 87.9
55 TraesCS2A01G227000 chr4D 94.643 56 2 1 5014 5069 7759930 7759876 1.280000e-12 86.1
56 TraesCS2A01G227000 chr4B 100.000 91 0 0 5922 6012 255382697 255382787 1.240000e-37 169.0
57 TraesCS2A01G227000 chr4B 83.060 183 28 3 3992 4173 362144214 362144034 5.750000e-36 163.0
58 TraesCS2A01G227000 chr4B 81.250 208 32 6 3975 4177 565735392 565735187 2.070000e-35 161.0
59 TraesCS2A01G227000 chr4B 92.523 107 7 1 5904 6009 142696558 142696664 1.250000e-32 152.0
60 TraesCS2A01G227000 chr4B 79.512 205 36 5 3975 4173 376157971 376157767 2.700000e-29 141.0
61 TraesCS2A01G227000 chr4B 80.745 161 25 5 3976 4130 34729973 34729813 3.510000e-23 121.0
62 TraesCS2A01G227000 chr4B 93.443 61 2 2 5013 5072 23660820 23660879 9.900000e-14 89.8
63 TraesCS2A01G227000 chr7D 81.773 203 33 3 3975 4173 71339575 71339777 4.450000e-37 167.0
64 TraesCS2A01G227000 chr7D 89.600 125 8 5 5896 6020 64274244 64274125 3.460000e-33 154.0
65 TraesCS2A01G227000 chr7D 96.226 53 1 1 5013 5065 490322088 490322139 1.280000e-12 86.1
66 TraesCS2A01G227000 chr7D 91.803 61 3 2 5013 5072 485090914 485090973 4.610000e-12 84.2
67 TraesCS2A01G227000 chr3B 98.925 93 0 1 5917 6009 42629630 42629539 1.600000e-36 165.0
68 TraesCS2A01G227000 chr3B 96.364 55 2 0 6199 6253 765834105 765834159 2.750000e-14 91.6
69 TraesCS2A01G227000 chr3B 93.220 59 4 0 6195 6253 775440307 775440365 3.560000e-13 87.9
70 TraesCS2A01G227000 chr3B 88.571 70 5 3 5013 5082 820445961 820446027 1.660000e-11 82.4
71 TraesCS2A01G227000 chr6D 80.296 203 33 4 3981 4177 310399525 310399726 5.790000e-31 147.0
72 TraesCS2A01G227000 chr6D 78.824 170 22 8 3976 4140 386222296 386222136 1.270000e-17 102.0
73 TraesCS2A01G227000 chr6D 98.148 54 0 1 5013 5066 433443783 433443731 7.660000e-15 93.5
74 TraesCS2A01G227000 chr6D 96.154 52 1 1 5013 5064 316232333 316232383 4.610000e-12 84.2
75 TraesCS2A01G227000 chr6D 96.154 52 1 1 5013 5064 389608144 389608094 4.610000e-12 84.2
76 TraesCS2A01G227000 chr6D 92.982 57 3 1 5013 5069 168293803 168293748 1.660000e-11 82.4
77 TraesCS2A01G227000 chr6D 94.340 53 2 1 5013 5065 85081832 85081781 5.960000e-11 80.5
78 TraesCS2A01G227000 chr6D 92.857 56 3 1 5013 5068 146072871 146072817 5.960000e-11 80.5
79 TraesCS2A01G227000 chr6D 90.323 62 5 1 5013 5074 317490528 317490468 5.960000e-11 80.5
80 TraesCS2A01G227000 chr6D 92.593 54 2 2 3976 4028 52703149 52703201 7.710000e-10 76.8
81 TraesCS2A01G227000 chr6D 82.418 91 13 2 3947 4037 157977105 157977018 7.710000e-10 76.8
82 TraesCS2A01G227000 chr6D 83.133 83 12 2 3992 4074 310517975 310517895 2.770000e-09 75.0
83 TraesCS2A01G227000 chr3D 90.123 81 8 0 3992 4072 39928154 39928074 9.830000e-19 106.0
84 TraesCS2A01G227000 chr3D 80.000 120 24 0 3995 4114 2993106 2992987 9.900000e-14 89.8
85 TraesCS2A01G227000 chr3D 96.296 54 0 2 5013 5066 26654164 26654215 3.560000e-13 87.9
86 TraesCS2A01G227000 chr3D 94.737 57 1 2 5013 5069 277573933 277573879 3.560000e-13 87.9
87 TraesCS2A01G227000 chrUn 82.353 119 19 2 3997 4114 32128760 32128643 1.270000e-17 102.0
88 TraesCS2A01G227000 chrUn 96.000 50 1 1 5013 5062 27944032 27943984 5.960000e-11 80.5
89 TraesCS2A01G227000 chrUn 90.323 62 4 2 5013 5073 336469345 336469285 5.960000e-11 80.5
90 TraesCS2A01G227000 chrUn 90.323 62 4 2 5013 5073 397152020 397151960 5.960000e-11 80.5
91 TraesCS2A01G227000 chrUn 92.727 55 1 3 5013 5066 104668844 104668896 7.710000e-10 76.8
92 TraesCS2A01G227000 chrUn 97.778 45 0 1 5019 5062 257127073 257127029 7.710000e-10 76.8
93 TraesCS2A01G227000 chrUn 97.778 45 0 1 5019 5062 266754836 266754792 7.710000e-10 76.8
94 TraesCS2A01G227000 chrUn 92.453 53 2 2 5013 5064 84435429 84435378 2.770000e-09 75.0
95 TraesCS2A01G227000 chrUn 93.878 49 3 0 5022 5070 273925314 273925266 2.770000e-09 75.0
96 TraesCS2A01G227000 chrUn 94.000 50 2 1 5013 5062 461112332 461112284 2.770000e-09 75.0
97 TraesCS2A01G227000 chrUn 90.909 55 4 1 5015 5069 67782835 67782782 9.970000e-09 73.1
98 TraesCS2A01G227000 chrUn 93.878 49 1 2 5014 5062 153386196 153386242 9.970000e-09 73.1
99 TraesCS2A01G227000 chrUn 94.872 39 2 0 3986 4024 36511335 36511297 2.160000e-05 62.1
100 TraesCS2A01G227000 chrUn 100.000 29 0 0 4017 4045 459025102 459025130 4.000000e-03 54.7
101 TraesCS2A01G227000 chr5D 87.952 83 10 0 3986 4068 8541088 8541170 1.650000e-16 99.0
102 TraesCS2A01G227000 chr5D 98.077 52 0 1 5013 5064 111788680 111788730 9.900000e-14 89.8
103 TraesCS2A01G227000 chr1D 84.694 98 12 3 3986 4082 435755374 435755279 2.130000e-15 95.3
104 TraesCS2A01G227000 chr1D 98.000 50 0 1 5013 5062 90207994 90207946 1.280000e-12 86.1
105 TraesCS2A01G227000 chr1D 96.226 53 1 1 5013 5065 106843256 106843205 1.280000e-12 86.1
106 TraesCS2A01G227000 chr1D 96.226 53 1 1 5014 5066 255500461 255500512 1.280000e-12 86.1
107 TraesCS2A01G227000 chr1D 93.103 58 2 2 5013 5069 115989959 115990015 4.610000e-12 84.2
108 TraesCS2A01G227000 chr1D 91.489 47 4 0 3998 4044 62422177 62422131 1.670000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G227000 chr2A 236833332 236840498 7166 False 13236.000000 13236 100.0000 1 7167 1 chr2A.!!$F1 7166
1 TraesCS2A01G227000 chr2A 319017051 319017978 927 False 1495.000000 1495 95.9050 6250 7167 1 chr2A.!!$F2 917
2 TraesCS2A01G227000 chr2A 711743726 711744389 663 True 876.000000 876 90.5120 6505 7167 1 chr2A.!!$R2 662
3 TraesCS2A01G227000 chr2D 255616642 255624524 7882 True 2980.800000 8499 96.5970 847 6204 3 chr2D.!!$R1 5357
4 TraesCS2A01G227000 chr2D 255681836 255682486 650 True 545.000000 652 97.2450 1 737 2 chr2D.!!$R2 736
5 TraesCS2A01G227000 chr2B 280482589 280485824 3235 False 4907.000000 4907 94.1410 426 3661 1 chr2B.!!$F3 3235
6 TraesCS2A01G227000 chr2B 280492692 280497815 5123 False 592.714286 1122 94.4330 3645 6204 7 chr2B.!!$F4 2559
7 TraesCS2A01G227000 chr4A 733003008 733003848 840 True 881.000000 881 85.6810 6311 7167 1 chr4A.!!$R2 856
8 TraesCS2A01G227000 chr4A 733003964 733004813 849 False 881.000000 881 85.4860 6302 7167 1 chr4A.!!$F1 865
9 TraesCS2A01G227000 chr4A 137171543 137172578 1035 False 789.300000 1487 95.3125 6196 7167 2 chr4A.!!$F2 971
10 TraesCS2A01G227000 chr5A 485378040 485378965 925 True 1485.000000 1485 95.7880 6252 7167 1 chr5A.!!$R3 915
11 TraesCS2A01G227000 chr5A 10833881 10834808 927 True 1461.000000 1461 95.2590 6250 7167 1 chr5A.!!$R1 917
12 TraesCS2A01G227000 chr7A 276127740 276128665 925 False 1469.000000 1469 95.4640 6252 7167 1 chr7A.!!$F1 915
13 TraesCS2A01G227000 chr7A 40787759 40788670 911 True 1230.000000 1230 91.0460 6250 7167 1 chr7A.!!$R1 917
14 TraesCS2A01G227000 chr7A 41434325 41434989 664 True 1048.000000 1048 95.3450 6250 6905 1 chr7A.!!$R2 655
15 TraesCS2A01G227000 chr6A 23490949 23491873 924 False 1469.000000 1469 95.4690 6250 7167 1 chr6A.!!$F2 917
16 TraesCS2A01G227000 chr6A 6439213 6440032 819 False 1256.000000 1256 94.2890 6346 7167 1 chr6A.!!$F1 821
17 TraesCS2A01G227000 chr1A 11560890 11561817 927 False 1461.000000 1461 95.2590 6250 7167 1 chr1A.!!$F1 917
18 TraesCS2A01G227000 chr1A 562896890 562897783 893 True 1330.000000 1330 93.4500 6262 7167 1 chr1A.!!$R2 905
19 TraesCS2A01G227000 chr7B 541234482 541235080 598 True 863.000000 863 92.6540 6569 7167 1 chr7B.!!$R1 598
20 TraesCS2A01G227000 chr5B 56689112 56689697 585 True 617.000000 617 85.8360 6587 7167 1 chr5B.!!$R1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 410 0.096281 CGACCAACACACACACACAC 59.904 55.000 0.00 0.0 0.00 3.82 F
745 747 0.314935 CAATCCCACGCACTTGCTTT 59.685 50.000 0.00 0.0 39.32 3.51 F
746 748 0.314935 AATCCCACGCACTTGCTTTG 59.685 50.000 0.00 0.0 39.32 2.77 F
747 749 0.537143 ATCCCACGCACTTGCTTTGA 60.537 50.000 0.00 0.0 39.32 2.69 F
828 830 1.073923 GCACAAGGAAGGAAGGAAGGA 59.926 52.381 0.00 0.0 0.00 3.36 F
925 3323 1.451927 CGCCCAGCCATACACACAT 60.452 57.895 0.00 0.0 0.00 3.21 F
2052 4494 1.807139 TTAAGCGCTTGATGCTCACA 58.193 45.000 32.23 6.1 43.14 3.58 F
2101 4543 1.980765 AGTCCATCAGAGGAGCAAACA 59.019 47.619 0.00 0.0 38.64 2.83 F
3463 5912 2.548057 CTGGTTGAACGCAAGAAGCTAA 59.452 45.455 0.00 0.0 42.61 3.09 F
3806 6259 2.793288 ATGATGTGAGTGGTGATGCA 57.207 45.000 0.00 0.0 0.00 3.96 F
5070 8876 3.255395 GGACGGAGGGAGTATTAGTTAGC 59.745 52.174 0.00 0.0 0.00 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 3705 0.108709 GCGGCAAAAATGGCATCTCA 60.109 50.000 0.00 0.0 0.00 3.27 R
1984 4426 1.792115 AGAGGAGAATCAGGAGGCAG 58.208 55.000 0.00 0.0 36.25 4.85 R
2101 4543 3.334583 AGTGATGCGGTGATAAACAGT 57.665 42.857 0.00 0.0 0.00 3.55 R
2495 4940 4.449131 TCAATGGCAAAGCAAAAACATGA 58.551 34.783 0.00 0.0 0.00 3.07 R
2857 5304 7.284489 AGTGTTTATTGACAGAAAGCCTTAACA 59.716 33.333 0.00 0.0 0.00 2.41 R
2944 5391 2.031682 GCAAATGACACGATATCCCAGC 60.032 50.000 0.00 0.0 0.00 4.85 R
3440 5889 0.662619 CTTCTTGCGTTCAACCAGCA 59.337 50.000 0.00 0.0 39.33 4.41 R
4028 6498 6.228258 TCGCTAGACTTGGTCAAACTTAAAT 58.772 36.000 0.00 0.0 34.60 1.40 R
5070 8876 4.754372 TTGATGTTAGAAAGCTGCAGTG 57.246 40.909 16.64 0.0 0.00 3.66 R
5658 9576 5.827797 GGAATACTGATCTACCAATGCCAAA 59.172 40.000 0.00 0.0 0.00 3.28 R
6325 11585 0.394352 CCAGGCGTGCTTTTCCCTAT 60.394 55.000 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 0.609131 CACGGTTGGCTTCCTGGATT 60.609 55.000 0.00 0.00 0.00 3.01
133 134 0.588252 GCTGAAGCAAGCGTCTTTCA 59.412 50.000 9.26 2.55 41.59 2.69
175 176 4.257654 TTGGCGTGGGCGGAGAAA 62.258 61.111 0.00 0.00 41.24 2.52
187 188 0.605589 CGGAGAAAGGCAGTGAGAGT 59.394 55.000 0.00 0.00 0.00 3.24
215 216 1.002868 GCCAGGAGCAGAGCAAGAA 60.003 57.895 0.00 0.00 42.97 2.52
240 241 1.068921 GCCTCCCGATCTTGAGCTC 59.931 63.158 6.82 6.82 0.00 4.09
242 243 1.047002 CCTCCCGATCTTGAGCTCAT 58.953 55.000 19.04 1.77 0.00 2.90
337 338 5.545658 ACGATGAAATGTGCGTATTTTCT 57.454 34.783 11.22 1.14 34.93 2.52
338 339 5.938322 ACGATGAAATGTGCGTATTTTCTT 58.062 33.333 11.22 6.68 34.93 2.52
339 340 6.378582 ACGATGAAATGTGCGTATTTTCTTT 58.621 32.000 11.22 2.52 34.93 2.52
396 398 2.399356 GGCAAGGCTAGCGACCAAC 61.399 63.158 9.00 0.00 0.00 3.77
398 400 1.912371 GCAAGGCTAGCGACCAACAC 61.912 60.000 9.00 0.00 0.00 3.32
400 402 0.602905 AAGGCTAGCGACCAACACAC 60.603 55.000 9.00 0.00 0.00 3.82
401 403 1.301401 GGCTAGCGACCAACACACA 60.301 57.895 9.00 0.00 0.00 3.72
402 404 1.566018 GGCTAGCGACCAACACACAC 61.566 60.000 9.00 0.00 0.00 3.82
403 405 0.878523 GCTAGCGACCAACACACACA 60.879 55.000 0.00 0.00 0.00 3.72
404 406 0.859232 CTAGCGACCAACACACACAC 59.141 55.000 0.00 0.00 0.00 3.82
405 407 0.175989 TAGCGACCAACACACACACA 59.824 50.000 0.00 0.00 0.00 3.72
406 408 1.061887 GCGACCAACACACACACAC 59.938 57.895 0.00 0.00 0.00 3.82
407 409 1.640210 GCGACCAACACACACACACA 61.640 55.000 0.00 0.00 0.00 3.72
408 410 0.096281 CGACCAACACACACACACAC 59.904 55.000 0.00 0.00 0.00 3.82
409 411 1.160989 GACCAACACACACACACACA 58.839 50.000 0.00 0.00 0.00 3.72
410 412 0.878416 ACCAACACACACACACACAC 59.122 50.000 0.00 0.00 0.00 3.82
411 413 0.877743 CCAACACACACACACACACA 59.122 50.000 0.00 0.00 0.00 3.72
412 414 1.400888 CCAACACACACACACACACAC 60.401 52.381 0.00 0.00 0.00 3.82
413 415 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
414 416 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
415 417 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
416 418 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
417 419 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
418 420 2.935849 ACACACACACACACACACATAG 59.064 45.455 0.00 0.00 0.00 2.23
419 421 2.287644 CACACACACACACACACATAGG 59.712 50.000 0.00 0.00 0.00 2.57
420 422 1.872952 CACACACACACACACATAGGG 59.127 52.381 0.00 0.00 0.00 3.53
421 423 1.765904 ACACACACACACACATAGGGA 59.234 47.619 0.00 0.00 0.00 4.20
422 424 2.371841 ACACACACACACACATAGGGAT 59.628 45.455 0.00 0.00 0.00 3.85
423 425 3.580895 ACACACACACACACATAGGGATA 59.419 43.478 0.00 0.00 0.00 2.59
424 426 3.932710 CACACACACACACATAGGGATAC 59.067 47.826 0.00 0.00 0.00 2.24
425 427 3.580895 ACACACACACACATAGGGATACA 59.419 43.478 0.00 0.00 39.74 2.29
426 428 4.225042 ACACACACACACATAGGGATACAT 59.775 41.667 0.00 0.00 39.74 2.29
427 429 5.423931 ACACACACACACATAGGGATACATA 59.576 40.000 0.00 0.00 37.19 2.29
428 430 5.753438 CACACACACACATAGGGATACATAC 59.247 44.000 0.00 0.00 34.47 2.39
429 431 5.423931 ACACACACACATAGGGATACATACA 59.576 40.000 0.00 0.00 34.47 2.29
430 432 6.099701 ACACACACACATAGGGATACATACAT 59.900 38.462 0.00 0.00 34.47 2.29
431 433 6.424812 CACACACACATAGGGATACATACATG 59.575 42.308 0.00 0.00 34.47 3.21
480 482 5.515008 GGAGGGTCTAAATTTGTTGAGAGGT 60.515 44.000 0.00 0.00 0.00 3.85
646 648 1.539929 GCTCGTTCATGGAGATGGAGG 60.540 57.143 2.03 0.00 33.27 4.30
742 744 1.926511 CTCCAATCCCACGCACTTGC 61.927 60.000 0.00 0.00 37.78 4.01
743 745 1.973281 CCAATCCCACGCACTTGCT 60.973 57.895 0.00 0.00 39.32 3.91
744 746 1.526575 CCAATCCCACGCACTTGCTT 61.527 55.000 0.00 0.00 39.32 3.91
745 747 0.314935 CAATCCCACGCACTTGCTTT 59.685 50.000 0.00 0.00 39.32 3.51
746 748 0.314935 AATCCCACGCACTTGCTTTG 59.685 50.000 0.00 0.00 39.32 2.77
747 749 0.537143 ATCCCACGCACTTGCTTTGA 60.537 50.000 0.00 0.00 39.32 2.69
748 750 1.165907 TCCCACGCACTTGCTTTGAG 61.166 55.000 0.00 0.00 39.32 3.02
749 751 1.370900 CCACGCACTTGCTTTGAGC 60.371 57.895 0.00 0.00 42.82 4.26
818 820 4.320788 GGTGAATGAAGAAGCACAAGGAAG 60.321 45.833 0.00 0.00 33.09 3.46
819 821 3.822735 TGAATGAAGAAGCACAAGGAAGG 59.177 43.478 0.00 0.00 0.00 3.46
820 822 3.795688 ATGAAGAAGCACAAGGAAGGA 57.204 42.857 0.00 0.00 0.00 3.36
821 823 3.576078 TGAAGAAGCACAAGGAAGGAA 57.424 42.857 0.00 0.00 0.00 3.36
822 824 3.480470 TGAAGAAGCACAAGGAAGGAAG 58.520 45.455 0.00 0.00 0.00 3.46
823 825 2.575805 AGAAGCACAAGGAAGGAAGG 57.424 50.000 0.00 0.00 0.00 3.46
824 826 2.057922 AGAAGCACAAGGAAGGAAGGA 58.942 47.619 0.00 0.00 0.00 3.36
825 827 2.443255 AGAAGCACAAGGAAGGAAGGAA 59.557 45.455 0.00 0.00 0.00 3.36
826 828 2.575805 AGCACAAGGAAGGAAGGAAG 57.424 50.000 0.00 0.00 0.00 3.46
827 829 1.074566 AGCACAAGGAAGGAAGGAAGG 59.925 52.381 0.00 0.00 0.00 3.46
828 830 1.073923 GCACAAGGAAGGAAGGAAGGA 59.926 52.381 0.00 0.00 0.00 3.36
829 831 2.489073 GCACAAGGAAGGAAGGAAGGAA 60.489 50.000 0.00 0.00 0.00 3.36
830 832 3.416156 CACAAGGAAGGAAGGAAGGAAG 58.584 50.000 0.00 0.00 0.00 3.46
925 3323 1.451927 CGCCCAGCCATACACACAT 60.452 57.895 0.00 0.00 0.00 3.21
1006 3405 2.816083 CGTGTCCGCGGCCATAAA 60.816 61.111 23.51 0.00 0.00 1.40
1028 3427 2.295909 CCATCTCTCGATTCTCCTCACC 59.704 54.545 0.00 0.00 0.00 4.02
1281 3705 2.790791 CCGAAGCTCTCGCATCCCT 61.791 63.158 11.33 0.00 46.71 4.20
1877 4319 8.674607 ACATGCTACAAAGGCTTAACTAATAAC 58.325 33.333 0.00 0.00 0.00 1.89
1971 4413 2.551270 TCTATGTTCCTGTCCAAGCCT 58.449 47.619 0.00 0.00 0.00 4.58
2052 4494 1.807139 TTAAGCGCTTGATGCTCACA 58.193 45.000 32.23 6.10 43.14 3.58
2101 4543 1.980765 AGTCCATCAGAGGAGCAAACA 59.019 47.619 0.00 0.00 38.64 2.83
2233 4676 9.211485 CTTGATCATTTCCTATTTGCTGTTTTT 57.789 29.630 0.00 0.00 0.00 1.94
2314 4759 6.636454 AAAAGATACCTCTGGTTGTCCATA 57.364 37.500 0.00 0.00 43.43 2.74
2347 4792 9.941325 TGCATGGTTGATCTTAACATTAATTTT 57.059 25.926 0.00 0.00 32.22 1.82
2495 4940 3.051803 TGGTGAGAACCAGATAGGAGGAT 60.052 47.826 0.00 0.00 41.22 3.24
2724 5169 6.088824 CCAAATTGCATCACTGAACTACTTC 58.911 40.000 0.00 0.00 0.00 3.01
2857 5304 5.787953 TCCATTTGAATGTCATGTTGTGT 57.212 34.783 3.30 0.00 34.60 3.72
2944 5391 7.785033 AGCCTCTTATTGTTAATGAAATTGGG 58.215 34.615 0.00 0.00 36.99 4.12
2968 5415 2.612212 GGGATATCGTGTCATTTGCGTT 59.388 45.455 0.00 0.00 0.00 4.84
3370 5819 3.444742 AGCAACACACCATTACCATCATG 59.555 43.478 0.00 0.00 0.00 3.07
3463 5912 2.548057 CTGGTTGAACGCAAGAAGCTAA 59.452 45.455 0.00 0.00 42.61 3.09
3759 6212 5.124036 TGTTATTCCTAGTTCCCATTGGG 57.876 43.478 16.26 16.26 46.11 4.12
3806 6259 2.793288 ATGATGTGAGTGGTGATGCA 57.207 45.000 0.00 0.00 0.00 3.96
4028 6498 8.253867 TCTAGGTTTGTCCTAAGTCAAACTTA 57.746 34.615 16.44 13.35 46.81 2.24
4183 7027 7.595311 ACTTGGTCAAACTTCAAATGTTTTC 57.405 32.000 0.00 0.00 35.71 2.29
4759 7603 8.662781 TCTCTTGTGGCTTTGTGATATAATAC 57.337 34.615 0.00 0.00 0.00 1.89
5070 8876 3.255395 GGACGGAGGGAGTATTAGTTAGC 59.745 52.174 0.00 0.00 0.00 3.09
5153 8959 5.411361 GTGATGTAGCTGTGTAAATTGTGGA 59.589 40.000 0.00 0.00 0.00 4.02
5516 9411 6.635239 TCTCGCTTTCCTTAAATTGAAAAACG 59.365 34.615 0.00 0.00 34.24 3.60
5658 9576 1.226435 GAAGCGACGTCGATGAGCT 60.226 57.895 39.74 23.96 43.02 4.09
5934 9853 1.207329 GAATGCTTGTACTCCCTCCGT 59.793 52.381 0.00 0.00 0.00 4.69
5938 9857 1.263356 CTTGTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
5944 9863 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5945 9864 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5947 9866 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5948 9867 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5949 9868 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5952 9871 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
5954 9873 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
5955 9874 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
5956 9875 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
5957 9876 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
5958 9877 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
5984 9903 9.716531 ATACTAACTTTAGTACAAAGTTGGGTC 57.283 33.333 28.62 0.00 46.38 4.46
5986 9905 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
5987 9906 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
5993 9989 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
6030 10026 9.516314 GAGTAGTATTTTACCATTTTCATTGCC 57.484 33.333 0.00 0.00 0.00 4.52
6052 10048 4.025396 CCGATTTGGACTTGAGATCATTCG 60.025 45.833 0.00 0.00 42.00 3.34
6388 11648 2.956333 CAAGGTTTTCTTTCCCCGACTT 59.044 45.455 0.00 0.00 32.41 3.01
6400 11660 4.379243 CGACTTGCCTCGCACCCT 62.379 66.667 0.00 0.00 38.71 4.34
6528 11792 2.519302 ACAGCAGCTGGGCGTTTT 60.519 55.556 26.38 0.00 39.27 2.43
6915 12190 3.199727 TCAGGATTGTGAATTCCATCCGA 59.800 43.478 16.89 14.84 33.67 4.55
7037 12312 0.460987 GCTCCCAGTGATTCACTCGG 60.461 60.000 20.77 20.77 43.43 4.63
7141 12416 5.943416 CCACAATACTTGAGAACACCCAATA 59.057 40.000 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 8.050316 AGACCAAGACCATAAATCCTTATGAT 57.950 34.615 6.47 0.00 44.99 2.45
175 176 2.888447 GCCCACACTCTCACTGCCT 61.888 63.158 0.00 0.00 0.00 4.75
224 225 1.685517 TGATGAGCTCAAGATCGGGAG 59.314 52.381 22.50 11.09 32.18 4.30
240 241 1.561076 TGGGTGGAGACAGGAATGATG 59.439 52.381 0.00 0.00 44.46 3.07
242 243 1.630369 CTTGGGTGGAGACAGGAATGA 59.370 52.381 0.00 0.00 44.46 2.57
289 290 9.952030 TTATATCTTGTGTTGTATTTGACCTGA 57.048 29.630 0.00 0.00 0.00 3.86
396 398 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
398 400 2.287644 CCTATGTGTGTGTGTGTGTGTG 59.712 50.000 0.00 0.00 0.00 3.82
400 402 1.872952 CCCTATGTGTGTGTGTGTGTG 59.127 52.381 0.00 0.00 0.00 3.82
401 403 1.765904 TCCCTATGTGTGTGTGTGTGT 59.234 47.619 0.00 0.00 0.00 3.72
402 404 2.542020 TCCCTATGTGTGTGTGTGTG 57.458 50.000 0.00 0.00 0.00 3.82
403 405 3.580895 TGTATCCCTATGTGTGTGTGTGT 59.419 43.478 0.00 0.00 0.00 3.72
404 406 4.200838 TGTATCCCTATGTGTGTGTGTG 57.799 45.455 0.00 0.00 0.00 3.82
405 407 5.423931 TGTATGTATCCCTATGTGTGTGTGT 59.576 40.000 0.00 0.00 0.00 3.72
406 408 5.912892 TGTATGTATCCCTATGTGTGTGTG 58.087 41.667 0.00 0.00 0.00 3.82
407 409 6.326323 TCATGTATGTATCCCTATGTGTGTGT 59.674 38.462 0.00 0.00 0.00 3.72
408 410 6.758254 TCATGTATGTATCCCTATGTGTGTG 58.242 40.000 0.00 0.00 0.00 3.82
409 411 6.994421 TCATGTATGTATCCCTATGTGTGT 57.006 37.500 0.00 0.00 0.00 3.72
410 412 8.675705 TTTTCATGTATGTATCCCTATGTGTG 57.324 34.615 0.00 0.00 0.00 3.82
480 482 9.959749 GTAAATCATCAACTTTGTTTTACCTCA 57.040 29.630 0.00 0.00 0.00 3.86
742 744 0.961753 GGTGGGTCAAAGGCTCAAAG 59.038 55.000 0.00 0.00 0.00 2.77
743 745 0.469144 GGGTGGGTCAAAGGCTCAAA 60.469 55.000 0.00 0.00 0.00 2.69
744 746 1.152830 GGGTGGGTCAAAGGCTCAA 59.847 57.895 0.00 0.00 0.00 3.02
745 747 2.840753 GGGGTGGGTCAAAGGCTCA 61.841 63.158 0.00 0.00 0.00 4.26
746 748 2.035783 GGGGTGGGTCAAAGGCTC 59.964 66.667 0.00 0.00 0.00 4.70
747 749 3.966543 CGGGGTGGGTCAAAGGCT 61.967 66.667 0.00 0.00 0.00 4.58
749 751 4.278513 TGCGGGGTGGGTCAAAGG 62.279 66.667 0.00 0.00 0.00 3.11
772 774 2.256764 CTGCGAGTGAGTGCGAGT 59.743 61.111 0.00 0.00 0.00 4.18
773 775 1.799519 GACTGCGAGTGAGTGCGAG 60.800 63.158 0.00 0.00 0.00 5.03
774 776 2.255554 GACTGCGAGTGAGTGCGA 59.744 61.111 0.00 0.00 0.00 5.10
775 777 3.168604 CGACTGCGAGTGAGTGCG 61.169 66.667 0.00 0.00 40.82 5.34
776 778 3.474034 GCGACTGCGAGTGAGTGC 61.474 66.667 0.00 0.00 40.82 4.40
818 820 0.626382 CCCCTTCCTTCCTTCCTTCC 59.374 60.000 0.00 0.00 0.00 3.46
819 821 1.670059 TCCCCTTCCTTCCTTCCTTC 58.330 55.000 0.00 0.00 0.00 3.46
820 822 2.385263 ATCCCCTTCCTTCCTTCCTT 57.615 50.000 0.00 0.00 0.00 3.36
821 823 3.526360 TTATCCCCTTCCTTCCTTCCT 57.474 47.619 0.00 0.00 0.00 3.36
822 824 4.168088 TCAATTATCCCCTTCCTTCCTTCC 59.832 45.833 0.00 0.00 0.00 3.46
823 825 5.380900 CTCAATTATCCCCTTCCTTCCTTC 58.619 45.833 0.00 0.00 0.00 3.46
824 826 4.386873 GCTCAATTATCCCCTTCCTTCCTT 60.387 45.833 0.00 0.00 0.00 3.36
825 827 3.139211 GCTCAATTATCCCCTTCCTTCCT 59.861 47.826 0.00 0.00 0.00 3.36
826 828 3.491342 GCTCAATTATCCCCTTCCTTCC 58.509 50.000 0.00 0.00 0.00 3.46
827 829 3.117512 TGGCTCAATTATCCCCTTCCTTC 60.118 47.826 0.00 0.00 0.00 3.46
828 830 2.858768 TGGCTCAATTATCCCCTTCCTT 59.141 45.455 0.00 0.00 0.00 3.36
829 831 2.502745 TGGCTCAATTATCCCCTTCCT 58.497 47.619 0.00 0.00 0.00 3.36
830 832 3.312736 TTGGCTCAATTATCCCCTTCC 57.687 47.619 0.00 0.00 0.00 3.46
1281 3705 0.108709 GCGGCAAAAATGGCATCTCA 60.109 50.000 0.00 0.00 0.00 3.27
1510 3936 8.895737 AGACGACATTTAGAAAACCTTACAAAA 58.104 29.630 0.00 0.00 0.00 2.44
1984 4426 1.792115 AGAGGAGAATCAGGAGGCAG 58.208 55.000 0.00 0.00 36.25 4.85
2101 4543 3.334583 AGTGATGCGGTGATAAACAGT 57.665 42.857 0.00 0.00 0.00 3.55
2233 4676 8.575589 TCTTATTGCAGCAGAAATACAGAAAAA 58.424 29.630 0.00 0.00 0.00 1.94
2314 4759 7.669427 TGTTAAGATCAACCATGCAGAAAATT 58.331 30.769 0.00 0.00 0.00 1.82
2495 4940 4.449131 TCAATGGCAAAGCAAAAACATGA 58.551 34.783 0.00 0.00 0.00 3.07
2857 5304 7.284489 AGTGTTTATTGACAGAAAGCCTTAACA 59.716 33.333 0.00 0.00 0.00 2.41
2944 5391 2.031682 GCAAATGACACGATATCCCAGC 60.032 50.000 0.00 0.00 0.00 4.85
3257 5704 6.017934 CAGGATGTGTGGATAATTTAACCTCG 60.018 42.308 4.57 0.00 0.00 4.63
3370 5819 5.886960 AAGAAGTCTGGCATCAAATGTAC 57.113 39.130 0.00 0.00 0.00 2.90
3440 5889 0.662619 CTTCTTGCGTTCAACCAGCA 59.337 50.000 0.00 0.00 39.33 4.41
3463 5912 9.726438 ACAAAGAAAGCACAATCTAGTACTATT 57.274 29.630 2.33 0.00 0.00 1.73
3759 6212 9.754382 AAACATCCAAACATTTGCTGATATATC 57.246 29.630 5.73 5.73 36.86 1.63
3773 6226 7.369607 CACTCACATCATAAAACATCCAAACA 58.630 34.615 0.00 0.00 0.00 2.83
4028 6498 6.228258 TCGCTAGACTTGGTCAAACTTAAAT 58.772 36.000 0.00 0.00 34.60 1.40
4183 7027 2.932614 CAATCTAGCACTCCCTCGTTTG 59.067 50.000 0.00 0.00 0.00 2.93
4917 8663 5.128205 CCTCATAAGAACAATGGCTGATCA 58.872 41.667 0.00 0.00 29.33 2.92
4995 8741 5.405873 GTGTAGTGAACTACTGCTTTCCTTC 59.594 44.000 18.74 0.00 46.74 3.46
5070 8876 4.754372 TTGATGTTAGAAAGCTGCAGTG 57.246 40.909 16.64 0.00 0.00 3.66
5552 9447 9.463443 CTTTATCTGTTGTTGAAAAGTTTAGGG 57.537 33.333 0.00 0.00 0.00 3.53
5658 9576 5.827797 GGAATACTGATCTACCAATGCCAAA 59.172 40.000 0.00 0.00 0.00 3.28
5958 9877 9.716531 GACCCAACTTTGTACTAAAGTTAGTAT 57.283 33.333 23.56 15.20 45.57 2.12
5960 9879 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
5961 9880 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
5962 9881 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
5964 9883 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
5965 9884 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
5966 9885 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
5967 9886 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
5969 9888 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
5970 9889 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
5971 9890 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
5972 9891 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
5973 9892 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
5974 9893 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
5976 9895 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5977 9896 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5978 9897 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5979 9898 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5981 9900 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5983 9902 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5984 9903 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5986 9905 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5987 9906 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5993 9989 3.393426 AATACTACTCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
6030 10026 4.551603 GCGAATGATCTCAAGTCCAAATCG 60.552 45.833 0.00 0.00 0.00 3.34
6052 10048 1.712401 TACACCGTTACCGACATTGC 58.288 50.000 0.00 0.00 35.63 3.56
6067 10063 2.029728 GCTCGTGATGCAGACAATACAC 59.970 50.000 0.00 0.00 0.00 2.90
6236 11441 0.536460 GAACCGGAAAAGTGGCCTGA 60.536 55.000 9.46 0.00 0.00 3.86
6325 11585 0.394352 CCAGGCGTGCTTTTCCCTAT 60.394 55.000 0.00 0.00 0.00 2.57
6416 11676 1.003928 TCGCCGGGATATAGCTAGTGA 59.996 52.381 2.18 0.00 0.00 3.41
6614 11880 1.114627 CTCATCCGAGTCCATCACCA 58.885 55.000 0.00 0.00 34.29 4.17
6915 12190 5.294552 GCACTTGAAGTAGTTGTCAAACTCT 59.705 40.000 0.00 0.00 43.34 3.24
7141 12416 1.251527 ATCCGAGCAGTGTCTTCCGT 61.252 55.000 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.