Multiple sequence alignment - TraesCS2A01G226800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G226800 chr2A 100.000 5137 0 0 1 5137 236835045 236829909 0.000000e+00 9487.0
1 TraesCS2A01G226800 chr2A 100.000 3203 0 0 5517 8719 236829529 236826327 0.000000e+00 5915.0
2 TraesCS2A01G226800 chr2A 87.953 938 90 12 7795 8717 57321272 57322201 0.000000e+00 1085.0
3 TraesCS2A01G226800 chr2A 85.291 945 111 11 7792 8719 404919650 404920583 0.000000e+00 950.0
4 TraesCS2A01G226800 chr4A 90.993 1621 118 8 2007 3611 724743414 724745022 0.000000e+00 2159.0
5 TraesCS2A01G226800 chr4A 92.361 1296 82 3 2332 3611 479619648 479618354 0.000000e+00 1829.0
6 TraesCS2A01G226800 chr4A 95.294 510 20 2 3606 4114 513336311 513335805 0.000000e+00 806.0
7 TraesCS2A01G226800 chr4A 87.687 268 29 4 1760 2024 724743060 724743326 8.500000e-80 309.0
8 TraesCS2A01G226800 chr4A 91.262 206 18 0 1763 1968 479620370 479620165 1.850000e-71 281.0
9 TraesCS2A01G226800 chr4A 95.495 111 3 2 5517 5625 513330378 513330268 9.000000e-40 176.0
10 TraesCS2A01G226800 chr4A 94.495 109 6 0 5517 5625 479620356 479620248 1.510000e-37 169.0
11 TraesCS2A01G226800 chr2D 92.621 1423 54 17 7335 8717 255684501 255685912 0.000000e+00 1999.0
12 TraesCS2A01G226800 chr2D 93.405 1122 59 1 2331 3437 28065325 28064204 0.000000e+00 1648.0
13 TraesCS2A01G226800 chr2D 98.316 772 10 1 5914 6682 255682528 255683299 0.000000e+00 1351.0
14 TraesCS2A01G226800 chr2D 96.059 812 14 3 1 799 255621253 255622059 0.000000e+00 1306.0
15 TraesCS2A01G226800 chr2D 90.562 943 66 10 7790 8717 131459110 131460044 0.000000e+00 1227.0
16 TraesCS2A01G226800 chr2D 98.689 610 7 1 6730 7339 255683302 255683910 0.000000e+00 1081.0
17 TraesCS2A01G226800 chr2D 92.624 583 25 6 7791 8371 495781926 495781360 0.000000e+00 822.0
18 TraesCS2A01G226800 chr2D 96.629 445 12 2 1319 1762 255682092 255682534 0.000000e+00 736.0
19 TraesCS2A01G226800 chr2D 98.016 252 5 0 978 1229 255681836 255682087 1.040000e-118 438.0
20 TraesCS2A01G226800 chr2D 91.085 258 18 4 5659 5912 20424784 20424528 2.330000e-90 344.0
21 TraesCS2A01G226800 chr2D 84.483 232 33 3 1762 1991 635814722 635814492 8.810000e-55 226.0
22 TraesCS2A01G226800 chr2D 89.888 178 13 4 1763 1937 627149549 627149724 3.170000e-54 224.0
23 TraesCS2A01G226800 chr2D 96.296 135 5 0 7792 7926 273007710 273007576 1.140000e-53 222.0
24 TraesCS2A01G226800 chr2D 95.455 110 4 1 5517 5625 627149563 627149672 3.240000e-39 174.0
25 TraesCS2A01G226800 chr2D 96.000 50 2 0 819 868 255624475 255624524 2.020000e-11 82.4
26 TraesCS2A01G226800 chr2D 94.000 50 3 0 6403 6452 327614814 327614863 9.390000e-10 76.8
27 TraesCS2A01G226800 chr2D 100.000 40 0 0 6411 6450 531937056 531937017 3.380000e-09 75.0
28 TraesCS2A01G226800 chr2D 88.889 54 4 1 6416 6469 10869122 10869071 2.030000e-06 65.8
29 TraesCS2A01G226800 chr1D 91.341 1432 86 16 2201 3611 326162585 326163999 0.000000e+00 1923.0
30 TraesCS2A01G226800 chr1D 84.653 202 27 4 1756 1955 205499257 205499058 1.920000e-46 198.0
31 TraesCS2A01G226800 chr1D 84.831 178 21 5 1763 1937 211633705 211633879 3.240000e-39 174.0
32 TraesCS2A01G226800 chr1D 82.297 209 28 9 1763 1965 275603224 275603019 1.160000e-38 172.0
33 TraesCS2A01G226800 chr1D 87.313 134 9 4 5781 5912 318585594 318585467 7.050000e-31 147.0
34 TraesCS2A01G226800 chr1D 90.385 104 9 1 5526 5628 205494172 205494069 1.530000e-27 135.0
35 TraesCS2A01G226800 chr1D 91.000 100 9 0 5526 5625 205499227 205499128 1.530000e-27 135.0
36 TraesCS2A01G226800 chr1D 84.058 138 17 4 5779 5912 17702928 17702792 2.550000e-25 128.0
37 TraesCS2A01G226800 chr1D 90.323 93 8 1 5820 5912 17726605 17726514 4.280000e-23 121.0
38 TraesCS2A01G226800 chr1D 84.211 114 12 4 5640 5748 132214641 132214529 1.200000e-18 106.0
39 TraesCS2A01G226800 chr1D 97.619 42 1 0 6411 6452 277349019 277349060 1.210000e-08 73.1
40 TraesCS2A01G226800 chr1D 97.561 41 1 0 6412 6452 128608836 128608876 4.370000e-08 71.3
41 TraesCS2A01G226800 chr1D 97.561 41 1 0 6412 6452 128978386 128978346 4.370000e-08 71.3
42 TraesCS2A01G226800 chr1D 95.556 45 1 1 6408 6452 263868015 263867972 4.370000e-08 71.3
43 TraesCS2A01G226800 chr1D 91.837 49 4 0 6401 6449 432215231 432215279 1.570000e-07 69.4
44 TraesCS2A01G226800 chr7D 93.446 1297 69 2 2331 3611 566460074 566458778 0.000000e+00 1910.0
45 TraesCS2A01G226800 chr7D 91.488 1351 92 9 2282 3611 58799480 58798132 0.000000e+00 1836.0
46 TraesCS2A01G226800 chr7D 91.016 1280 100 6 2347 3611 292263601 292264880 0.000000e+00 1712.0
47 TraesCS2A01G226800 chr7D 95.481 509 22 1 3607 4114 2892955 2893463 0.000000e+00 811.0
48 TraesCS2A01G226800 chr7D 95.098 510 24 1 3606 4114 20293511 20293002 0.000000e+00 802.0
49 TraesCS2A01G226800 chr7D 90.182 275 24 3 5640 5913 633367168 633366896 1.080000e-93 355.0
50 TraesCS2A01G226800 chr7D 85.870 276 31 7 5640 5912 107266919 107266649 3.980000e-73 287.0
51 TraesCS2A01G226800 chr7D 86.893 206 27 0 1758 1963 555211689 555211484 1.890000e-56 231.0
52 TraesCS2A01G226800 chr7D 82.564 195 32 2 1782 1976 179986264 179986456 4.190000e-38 171.0
53 TraesCS2A01G226800 chr7D 95.652 46 2 0 6407 6452 543637933 543637888 3.380000e-09 75.0
54 TraesCS2A01G226800 chr2B 87.924 1623 164 13 2008 3612 51109396 51111004 0.000000e+00 1882.0
55 TraesCS2A01G226800 chr2B 92.117 1332 21 23 1 1289 280483879 280482589 0.000000e+00 1801.0
56 TraesCS2A01G226800 chr2B 95.657 898 20 3 6458 7339 280475346 280474452 0.000000e+00 1424.0
57 TraesCS2A01G226800 chr2B 95.635 504 21 1 5914 6417 280475847 280475345 0.000000e+00 808.0
58 TraesCS2A01G226800 chr2B 97.835 462 9 1 7335 7796 280473705 280473245 0.000000e+00 797.0
59 TraesCS2A01G226800 chr2B 94.050 437 17 5 1328 1762 280476270 280475841 0.000000e+00 654.0
60 TraesCS2A01G226800 chr2B 91.636 275 16 3 5640 5912 306906184 306906453 2.970000e-99 374.0
61 TraesCS2A01G226800 chr2B 86.567 268 30 5 1762 2024 51109030 51109296 3.080000e-74 291.0
62 TraesCS2A01G226800 chr2B 94.444 108 5 1 5519 5625 791395158 791395265 1.950000e-36 165.0
63 TraesCS2A01G226800 chr2B 94.000 50 3 0 6403 6452 396927373 396927422 9.390000e-10 76.8
64 TraesCS2A01G226800 chr2B 100.000 41 0 0 6412 6452 790113030 790112990 9.390000e-10 76.8
65 TraesCS2A01G226800 chr2B 92.157 51 3 1 6403 6452 693093554 693093504 4.370000e-08 71.3
66 TraesCS2A01G226800 chr4D 91.908 1347 86 12 2281 3611 504006812 504005473 0.000000e+00 1862.0
67 TraesCS2A01G226800 chr4D 92.326 1290 83 2 2337 3611 64353996 64352708 0.000000e+00 1820.0
68 TraesCS2A01G226800 chr4D 79.449 944 168 12 7795 8719 235500093 235499157 0.000000e+00 645.0
69 TraesCS2A01G226800 chr4D 93.727 271 16 1 5643 5912 215464733 215464463 1.050000e-108 405.0
70 TraesCS2A01G226800 chr4D 86.477 281 26 10 5640 5916 73247783 73248055 1.840000e-76 298.0
71 TraesCS2A01G226800 chr4D 84.000 275 32 10 5640 5910 374514575 374514841 4.040000e-63 254.0
72 TraesCS2A01G226800 chr4D 82.119 151 19 5 5764 5912 302691290 302691434 1.190000e-23 122.0
73 TraesCS2A01G226800 chr4D 95.455 44 2 0 6409 6452 460563165 460563122 4.370000e-08 71.3
74 TraesCS2A01G226800 chr4D 95.455 44 0 1 6416 6459 397158975 397158934 1.570000e-07 69.4
75 TraesCS2A01G226800 chr3D 92.084 1339 77 16 2281 3602 3345221 3343895 0.000000e+00 1858.0
76 TraesCS2A01G226800 chr3D 92.662 1281 73 3 2347 3611 92863835 92862560 0.000000e+00 1825.0
77 TraesCS2A01G226800 chr3D 91.927 1313 84 12 2320 3611 609640199 609638888 0.000000e+00 1818.0
78 TraesCS2A01G226800 chr3D 90.491 936 67 10 7795 8715 443355382 443354454 0.000000e+00 1216.0
79 TraesCS2A01G226800 chr3D 89.714 943 73 11 7790 8717 67479955 67479022 0.000000e+00 1182.0
80 TraesCS2A01G226800 chr3D 89.077 943 78 15 7795 8719 237831444 237832379 0.000000e+00 1147.0
81 TraesCS2A01G226800 chr3D 96.071 509 19 1 3607 4114 443417217 443417725 0.000000e+00 828.0
82 TraesCS2A01G226800 chr3D 83.404 235 33 5 1761 1991 514900760 514900992 6.860000e-51 213.0
83 TraesCS2A01G226800 chr3D 97.674 43 1 0 6410 6452 569116169 569116127 3.380000e-09 75.0
84 TraesCS2A01G226800 chr3A 97.366 1025 25 2 4114 5137 721575359 721576382 0.000000e+00 1742.0
85 TraesCS2A01G226800 chr3A 87.155 942 97 12 7791 8717 380875092 380874160 0.000000e+00 1048.0
86 TraesCS2A01G226800 chr7A 96.098 1025 35 3 4114 5137 679848544 679849564 0.000000e+00 1666.0
87 TraesCS2A01G226800 chr7A 88.743 915 81 8 7791 8690 213820348 213821255 0.000000e+00 1099.0
88 TraesCS2A01G226800 chr7A 94.561 239 13 0 7795 8033 409257548 409257310 3.840000e-98 370.0
89 TraesCS2A01G226800 chr7A 90.155 193 15 4 1763 1953 679844583 679844773 1.880000e-61 248.0
90 TraesCS2A01G226800 chr6B 96.000 1025 39 2 4114 5137 174587928 174588951 0.000000e+00 1664.0
91 TraesCS2A01G226800 chr6B 95.610 1025 43 2 4114 5137 29987915 29988938 0.000000e+00 1642.0
92 TraesCS2A01G226800 chr5B 95.902 1025 40 2 4114 5137 102596794 102595771 0.000000e+00 1659.0
93 TraesCS2A01G226800 chr5B 91.945 658 43 4 7795 8450 531823037 531822388 0.000000e+00 913.0
94 TraesCS2A01G226800 chr5B 95.499 511 22 1 3605 4114 686545545 686545035 0.000000e+00 815.0
95 TraesCS2A01G226800 chr5B 87.923 207 20 5 1763 1965 102601288 102601083 1.130000e-58 239.0
96 TraesCS2A01G226800 chr5B 93.103 116 5 2 5517 5629 11463111 11462996 5.410000e-37 167.0
97 TraesCS2A01G226800 chr5B 93.694 111 5 2 5517 5625 102595751 102595641 1.950000e-36 165.0
98 TraesCS2A01G226800 chr5B 95.349 43 2 0 1687 1729 699434858 699434900 1.570000e-07 69.4
99 TraesCS2A01G226800 chr5B 84.848 66 6 3 6390 6452 602247029 602247093 7.310000e-06 63.9
100 TraesCS2A01G226800 chr4B 95.805 1025 41 2 4114 5137 35243050 35242027 0.000000e+00 1653.0
101 TraesCS2A01G226800 chr4B 89.855 276 26 1 5640 5913 57172070 57172345 3.870000e-93 353.0
102 TraesCS2A01G226800 chr4B 86.909 275 32 3 5640 5912 68407041 68406769 1.100000e-78 305.0
103 TraesCS2A01G226800 chr4B 92.793 111 6 2 5517 5625 667429981 667429871 9.060000e-35 159.0
104 TraesCS2A01G226800 chr4B 100.000 39 0 0 6414 6452 12501305 12501343 1.210000e-08 73.1
105 TraesCS2A01G226800 chr4B 97.619 42 0 1 6411 6452 447451798 447451758 4.370000e-08 71.3
106 TraesCS2A01G226800 chr4B 92.308 52 0 3 6414 6462 579410632 579410682 4.370000e-08 71.3
107 TraesCS2A01G226800 chr3B 95.707 1025 42 2 4114 5137 727147031 727146008 0.000000e+00 1648.0
108 TraesCS2A01G226800 chr3B 87.706 1033 105 9 2007 3035 814779139 814780153 0.000000e+00 1184.0
109 TraesCS2A01G226800 chr3B 85.019 267 34 5 1763 2024 814778775 814779040 5.190000e-67 267.0
110 TraesCS2A01G226800 chr3B 94.495 109 6 0 5517 5625 223525587 223525695 1.510000e-37 169.0
111 TraesCS2A01G226800 chr3B 95.652 46 2 0 6414 6459 766825803 766825848 3.380000e-09 75.0
112 TraesCS2A01G226800 chr1B 95.610 1025 43 2 4114 5137 133438572 133439595 0.000000e+00 1642.0
113 TraesCS2A01G226800 chr1B 96.086 511 19 1 3605 4114 262089236 262089746 0.000000e+00 832.0
114 TraesCS2A01G226800 chr1B 90.226 266 23 2 5640 5903 16765040 16765304 2.330000e-90 344.0
115 TraesCS2A01G226800 chr1B 86.957 207 22 5 1763 1965 133434589 133434794 2.450000e-55 228.0
116 TraesCS2A01G226800 chr1B 100.000 42 0 0 6411 6452 406341851 406341810 2.610000e-10 78.7
117 TraesCS2A01G226800 chr1A 95.610 1025 43 2 4114 5137 257563579 257564602 0.000000e+00 1642.0
118 TraesCS2A01G226800 chr1A 88.603 272 30 1 5640 5910 506269277 506269548 6.530000e-86 329.0
119 TraesCS2A01G226800 chr1A 90.234 256 18 5 5661 5912 547416740 547416992 2.350000e-85 327.0
120 TraesCS2A01G226800 chr1A 87.273 275 29 4 5640 5912 175175910 175176180 8.500000e-80 309.0
121 TraesCS2A01G226800 chr1A 86.282 277 29 6 5640 5913 337681524 337681794 8.560000e-75 292.0
122 TraesCS2A01G226800 chr1A 92.574 202 14 1 7792 7993 517097531 517097731 1.110000e-73 289.0
123 TraesCS2A01G226800 chr1A 87.923 207 20 5 1763 1965 534100205 534100410 1.130000e-58 239.0
124 TraesCS2A01G226800 chr1A 88.525 183 16 5 1763 1942 438664406 438664586 5.300000e-52 217.0
125 TraesCS2A01G226800 chr1A 96.078 102 3 1 5517 5617 257564626 257564727 1.950000e-36 165.0
126 TraesCS2A01G226800 chr1A 93.694 111 5 2 5517 5625 534139615 534139725 1.950000e-36 165.0
127 TraesCS2A01G226800 chr1A 93.694 111 5 2 5517 5625 534140434 534140544 1.950000e-36 165.0
128 TraesCS2A01G226800 chr1A 92.793 111 6 1 5517 5625 487684647 487684537 9.060000e-35 159.0
129 TraesCS2A01G226800 chr5D 88.820 1297 117 8 2332 3612 4351052 4352336 0.000000e+00 1567.0
130 TraesCS2A01G226800 chr5D 93.756 993 47 1 2634 3611 514936497 514937489 0.000000e+00 1476.0
131 TraesCS2A01G226800 chr5D 95.285 509 23 1 3607 4114 250593203 250593711 0.000000e+00 806.0
132 TraesCS2A01G226800 chr5D 95.088 509 24 1 3607 4114 544686441 544685933 0.000000e+00 800.0
133 TraesCS2A01G226800 chr5D 93.791 306 16 3 8195 8498 7593129 7593433 2.870000e-124 457.0
134 TraesCS2A01G226800 chr5D 92.632 285 20 1 7784 8068 7592846 7593129 8.150000e-110 409.0
135 TraesCS2A01G226800 chr5D 91.321 265 20 2 5640 5902 42233399 42233136 8.320000e-95 359.0
136 TraesCS2A01G226800 chr5D 86.594 276 31 5 5640 5912 293160697 293160425 5.120000e-77 300.0
137 TraesCS2A01G226800 chr5D 85.606 264 34 3 5640 5901 556926150 556926411 3.100000e-69 274.0
138 TraesCS2A01G226800 chr5D 84.420 276 38 4 5640 5912 55834292 55834565 5.190000e-67 267.0
139 TraesCS2A01G226800 chr5D 84.559 272 30 10 5640 5907 21991438 21991175 8.680000e-65 259.0
140 TraesCS2A01G226800 chr5D 83.883 273 34 8 5643 5912 451709564 451709299 1.450000e-62 252.0
141 TraesCS2A01G226800 chr5D 87.215 219 23 5 1763 1979 275606489 275606704 2.430000e-60 244.0
142 TraesCS2A01G226800 chr5D 86.598 194 25 1 1763 1955 393870115 393869922 6.860000e-51 213.0
143 TraesCS2A01G226800 chr5D 93.519 108 5 2 5519 5625 393815131 393815025 9.060000e-35 159.0
144 TraesCS2A01G226800 chr5D 92.593 108 6 2 5519 5625 393849457 393849351 4.220000e-33 154.0
145 TraesCS2A01G226800 chr5D 92.308 104 7 1 5523 5625 393870095 393869992 7.050000e-31 147.0
146 TraesCS2A01G226800 chr5D 91.379 58 2 3 6397 6452 256744011 256743955 9.390000e-10 76.8
147 TraesCS2A01G226800 chr5D 97.674 43 0 1 6410 6452 174010664 174010623 1.210000e-08 73.1
148 TraesCS2A01G226800 chr5D 95.455 44 2 0 6409 6452 240087169 240087212 4.370000e-08 71.3
149 TraesCS2A01G226800 chr5D 97.619 42 0 1 6411 6452 248589496 248589456 4.370000e-08 71.3
150 TraesCS2A01G226800 chr5D 97.297 37 1 0 1691 1727 543223184 543223148 7.310000e-06 63.9
151 TraesCS2A01G226800 chr7B 88.423 1287 140 6 2332 3612 60425524 60426807 0.000000e+00 1543.0
152 TraesCS2A01G226800 chr7B 89.944 179 13 4 1763 1937 559016016 559015839 8.810000e-55 226.0
153 TraesCS2A01G226800 chr7B 90.303 165 14 1 7795 7957 472241637 472241473 1.910000e-51 215.0
154 TraesCS2A01G226800 chr5A 95.686 510 21 1 3606 4114 475317321 475316812 0.000000e+00 819.0
155 TraesCS2A01G226800 chr5A 93.636 110 6 1 5517 5625 688268419 688268528 7.000000e-36 163.0
156 TraesCS2A01G226800 chr5A 93.878 49 2 1 6411 6459 119216150 119216197 1.210000e-08 73.1
157 TraesCS2A01G226800 chr6A 91.288 264 21 2 5640 5902 191240910 191241172 8.320000e-95 359.0
158 TraesCS2A01G226800 chr6A 92.157 51 1 3 6402 6452 93285693 93285740 1.570000e-07 69.4
159 TraesCS2A01G226800 chr6D 87.636 275 30 3 5640 5912 156559540 156559812 5.080000e-82 316.0
160 TraesCS2A01G226800 chr6D 89.062 192 19 2 1763 1953 291787255 291787445 4.070000e-58 237.0
161 TraesCS2A01G226800 chr6D 81.967 244 26 14 5677 5914 108554266 108554035 3.210000e-44 191.0
162 TraesCS2A01G226800 chr6D 89.516 124 12 1 1763 1885 21027722 21027845 1.170000e-33 156.0
163 TraesCS2A01G226800 chr6D 78.229 271 38 13 5640 5908 140221503 140221754 4.220000e-33 154.0
164 TraesCS2A01G226800 chr6D 88.618 123 14 0 1763 1885 291792283 291792405 5.450000e-32 150.0
165 TraesCS2A01G226800 chr6D 77.091 275 40 11 5640 5912 434181532 434181785 4.250000e-28 137.0
166 TraesCS2A01G226800 chr6D 88.182 110 12 1 5517 5625 21027736 21027845 7.100000e-26 130.0
167 TraesCS2A01G226800 chr6D 85.321 109 14 2 5804 5911 190570473 190570366 2.570000e-20 111.0
168 TraesCS2A01G226800 chr6D 100.000 39 0 0 6414 6452 20553667 20553705 1.210000e-08 73.1
169 TraesCS2A01G226800 chr6D 100.000 38 0 0 6415 6452 9406691 9406728 4.370000e-08 71.3
170 TraesCS2A01G226800 chr6D 100.000 38 0 0 6415 6452 299191262 299191299 4.370000e-08 71.3
171 TraesCS2A01G226800 chr6D 100.000 38 0 0 6415 6452 377341741 377341704 4.370000e-08 71.3
172 TraesCS2A01G226800 chrUn 87.293 181 17 4 1760 1937 83944871 83945048 1.480000e-47 202.0
173 TraesCS2A01G226800 chrUn 80.287 279 33 10 5640 5912 132062060 132061798 3.210000e-44 191.0
174 TraesCS2A01G226800 chrUn 79.926 269 32 9 5646 5912 108274589 108274837 2.500000e-40 178.0
175 TraesCS2A01G226800 chrUn 91.935 124 9 1 1764 1886 47387321 47387198 1.160000e-38 172.0
176 TraesCS2A01G226800 chrUn 91.935 124 9 1 1764 1886 240790195 240790318 1.160000e-38 172.0
177 TraesCS2A01G226800 chrUn 91.935 124 9 1 1764 1886 347256394 347256517 1.160000e-38 172.0
178 TraesCS2A01G226800 chrUn 91.935 124 9 1 1764 1886 408076132 408076255 1.160000e-38 172.0
179 TraesCS2A01G226800 chrUn 91.935 124 9 1 1764 1886 454713306 454713429 1.160000e-38 172.0
180 TraesCS2A01G226800 chrUn 93.103 116 7 1 5517 5631 47387308 47387193 1.510000e-37 169.0
181 TraesCS2A01G226800 chrUn 93.103 116 7 1 5517 5631 240790208 240790323 1.510000e-37 169.0
182 TraesCS2A01G226800 chrUn 93.103 116 7 1 5517 5631 347256407 347256522 1.510000e-37 169.0
183 TraesCS2A01G226800 chrUn 93.103 116 7 1 5517 5631 408076145 408076260 1.510000e-37 169.0
184 TraesCS2A01G226800 chrUn 93.103 116 7 1 5517 5631 454713319 454713434 1.510000e-37 169.0
185 TraesCS2A01G226800 chrUn 90.991 111 8 1 5517 5625 83944888 83944998 1.960000e-31 148.0
186 TraesCS2A01G226800 chrUn 90.991 111 9 1 5517 5626 300552368 300552258 1.960000e-31 148.0
187 TraesCS2A01G226800 chrUn 88.095 126 10 4 1763 1885 300552382 300552259 2.540000e-30 145.0
188 TraesCS2A01G226800 chrUn 83.333 138 18 4 5779 5912 330529751 330529615 1.190000e-23 122.0
189 TraesCS2A01G226800 chrUn 90.323 93 8 1 5820 5912 353360207 353360116 4.280000e-23 121.0
190 TraesCS2A01G226800 chrUn 90.323 93 8 1 5820 5912 353362425 353362334 4.280000e-23 121.0
191 TraesCS2A01G226800 chrUn 95.652 46 1 1 5847 5891 27609200 27609155 1.210000e-08 73.1
192 TraesCS2A01G226800 chrUn 100.000 39 0 0 6414 6452 88110429 88110467 1.210000e-08 73.1
193 TraesCS2A01G226800 chrUn 95.556 45 2 0 6408 6452 122074164 122074208 1.210000e-08 73.1
194 TraesCS2A01G226800 chrUn 100.000 38 0 0 6415 6452 41223909 41223872 4.370000e-08 71.3
195 TraesCS2A01G226800 chrUn 100.000 38 0 0 6415 6452 380168717 380168680 4.370000e-08 71.3
196 TraesCS2A01G226800 chrUn 100.000 38 0 0 6415 6452 442634267 442634230 4.370000e-08 71.3
197 TraesCS2A01G226800 chrUn 100.000 37 0 0 6416 6452 3346398 3346434 1.570000e-07 69.4
198 TraesCS2A01G226800 chrUn 97.561 41 0 1 6413 6452 10254804 10254764 1.570000e-07 69.4
199 TraesCS2A01G226800 chrUn 100.000 37 0 0 6416 6452 36436975 36436939 1.570000e-07 69.4
200 TraesCS2A01G226800 chrUn 97.561 41 0 1 6413 6452 46240435 46240395 1.570000e-07 69.4
201 TraesCS2A01G226800 chrUn 100.000 37 0 0 6416 6452 101630800 101630836 1.570000e-07 69.4
202 TraesCS2A01G226800 chrUn 90.566 53 3 1 5864 5914 132070683 132070631 1.570000e-07 69.4
203 TraesCS2A01G226800 chrUn 97.561 41 0 1 6413 6452 253929077 253929117 1.570000e-07 69.4
204 TraesCS2A01G226800 chrUn 97.297 37 1 0 6416 6452 88589974 88589938 7.310000e-06 63.9
205 TraesCS2A01G226800 chrUn 91.111 45 3 1 5848 5891 29808549 29808505 9.450000e-05 60.2
206 TraesCS2A01G226800 chrUn 88.235 51 5 1 5863 5912 339830474 339830524 9.450000e-05 60.2
207 TraesCS2A01G226800 chrUn 81.690 71 11 2 5844 5912 50231668 50231738 3.400000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G226800 chr2A 236826327 236835045 8718 True 7701.000000 9487 100.00000 1 8719 2 chr2A.!!$R1 8718
1 TraesCS2A01G226800 chr2A 57321272 57322201 929 False 1085.000000 1085 87.95300 7795 8717 1 chr2A.!!$F1 922
2 TraesCS2A01G226800 chr2A 404919650 404920583 933 False 950.000000 950 85.29100 7792 8719 1 chr2A.!!$F2 927
3 TraesCS2A01G226800 chr4A 724743060 724745022 1962 False 1234.000000 2159 89.34000 1760 3611 2 chr4A.!!$F1 1851
4 TraesCS2A01G226800 chr4A 513335805 513336311 506 True 806.000000 806 95.29400 3606 4114 1 chr4A.!!$R2 508
5 TraesCS2A01G226800 chr4A 479618354 479620370 2016 True 759.666667 1829 92.70600 1763 5625 3 chr4A.!!$R3 3862
6 TraesCS2A01G226800 chr2D 28064204 28065325 1121 True 1648.000000 1648 93.40500 2331 3437 1 chr2D.!!$R3 1106
7 TraesCS2A01G226800 chr2D 131459110 131460044 934 False 1227.000000 1227 90.56200 7790 8717 1 chr2D.!!$F1 927
8 TraesCS2A01G226800 chr2D 255681836 255685912 4076 False 1121.000000 1999 96.85420 978 8717 5 chr2D.!!$F4 7739
9 TraesCS2A01G226800 chr2D 495781360 495781926 566 True 822.000000 822 92.62400 7791 8371 1 chr2D.!!$R5 580
10 TraesCS2A01G226800 chr2D 255621253 255624524 3271 False 694.200000 1306 96.02950 1 868 2 chr2D.!!$F3 867
11 TraesCS2A01G226800 chr1D 326162585 326163999 1414 False 1923.000000 1923 91.34100 2201 3611 1 chr1D.!!$F4 1410
12 TraesCS2A01G226800 chr7D 566458778 566460074 1296 True 1910.000000 1910 93.44600 2331 3611 1 chr7D.!!$R6 1280
13 TraesCS2A01G226800 chr7D 58798132 58799480 1348 True 1836.000000 1836 91.48800 2282 3611 1 chr7D.!!$R2 1329
14 TraesCS2A01G226800 chr7D 292263601 292264880 1279 False 1712.000000 1712 91.01600 2347 3611 1 chr7D.!!$F3 1264
15 TraesCS2A01G226800 chr7D 2892955 2893463 508 False 811.000000 811 95.48100 3607 4114 1 chr7D.!!$F1 507
16 TraesCS2A01G226800 chr7D 20293002 20293511 509 True 802.000000 802 95.09800 3606 4114 1 chr7D.!!$R1 508
17 TraesCS2A01G226800 chr2B 280482589 280483879 1290 True 1801.000000 1801 92.11700 1 1289 1 chr2B.!!$R1 1288
18 TraesCS2A01G226800 chr2B 51109030 51111004 1974 False 1086.500000 1882 87.24550 1762 3612 2 chr2B.!!$F4 1850
19 TraesCS2A01G226800 chr2B 280473245 280476270 3025 True 920.750000 1424 95.79425 1328 7796 4 chr2B.!!$R4 6468
20 TraesCS2A01G226800 chr4D 504005473 504006812 1339 True 1862.000000 1862 91.90800 2281 3611 1 chr4D.!!$R6 1330
21 TraesCS2A01G226800 chr4D 64352708 64353996 1288 True 1820.000000 1820 92.32600 2337 3611 1 chr4D.!!$R1 1274
22 TraesCS2A01G226800 chr4D 235499157 235500093 936 True 645.000000 645 79.44900 7795 8719 1 chr4D.!!$R3 924
23 TraesCS2A01G226800 chr3D 3343895 3345221 1326 True 1858.000000 1858 92.08400 2281 3602 1 chr3D.!!$R1 1321
24 TraesCS2A01G226800 chr3D 92862560 92863835 1275 True 1825.000000 1825 92.66200 2347 3611 1 chr3D.!!$R3 1264
25 TraesCS2A01G226800 chr3D 609638888 609640199 1311 True 1818.000000 1818 91.92700 2320 3611 1 chr3D.!!$R6 1291
26 TraesCS2A01G226800 chr3D 443354454 443355382 928 True 1216.000000 1216 90.49100 7795 8715 1 chr3D.!!$R4 920
27 TraesCS2A01G226800 chr3D 67479022 67479955 933 True 1182.000000 1182 89.71400 7790 8717 1 chr3D.!!$R2 927
28 TraesCS2A01G226800 chr3D 237831444 237832379 935 False 1147.000000 1147 89.07700 7795 8719 1 chr3D.!!$F1 924
29 TraesCS2A01G226800 chr3D 443417217 443417725 508 False 828.000000 828 96.07100 3607 4114 1 chr3D.!!$F2 507
30 TraesCS2A01G226800 chr3A 721575359 721576382 1023 False 1742.000000 1742 97.36600 4114 5137 1 chr3A.!!$F1 1023
31 TraesCS2A01G226800 chr3A 380874160 380875092 932 True 1048.000000 1048 87.15500 7791 8717 1 chr3A.!!$R1 926
32 TraesCS2A01G226800 chr7A 213820348 213821255 907 False 1099.000000 1099 88.74300 7791 8690 1 chr7A.!!$F1 899
33 TraesCS2A01G226800 chr7A 679844583 679849564 4981 False 957.000000 1666 93.12650 1763 5137 2 chr7A.!!$F2 3374
34 TraesCS2A01G226800 chr6B 174587928 174588951 1023 False 1664.000000 1664 96.00000 4114 5137 1 chr6B.!!$F2 1023
35 TraesCS2A01G226800 chr6B 29987915 29988938 1023 False 1642.000000 1642 95.61000 4114 5137 1 chr6B.!!$F1 1023
36 TraesCS2A01G226800 chr5B 531822388 531823037 649 True 913.000000 913 91.94500 7795 8450 1 chr5B.!!$R3 655
37 TraesCS2A01G226800 chr5B 102595641 102596794 1153 True 912.000000 1659 94.79800 4114 5625 2 chr5B.!!$R5 1511
38 TraesCS2A01G226800 chr5B 686545035 686545545 510 True 815.000000 815 95.49900 3605 4114 1 chr5B.!!$R4 509
39 TraesCS2A01G226800 chr4B 35242027 35243050 1023 True 1653.000000 1653 95.80500 4114 5137 1 chr4B.!!$R1 1023
40 TraesCS2A01G226800 chr3B 727146008 727147031 1023 True 1648.000000 1648 95.70700 4114 5137 1 chr3B.!!$R1 1023
41 TraesCS2A01G226800 chr3B 814778775 814780153 1378 False 725.500000 1184 86.36250 1763 3035 2 chr3B.!!$F3 1272
42 TraesCS2A01G226800 chr1B 133434589 133439595 5006 False 935.000000 1642 91.28350 1763 5137 2 chr1B.!!$F3 3374
43 TraesCS2A01G226800 chr1B 262089236 262089746 510 False 832.000000 832 96.08600 3605 4114 1 chr1B.!!$F2 509
44 TraesCS2A01G226800 chr1A 257563579 257564727 1148 False 903.500000 1642 95.84400 4114 5617 2 chr1A.!!$F8 1503
45 TraesCS2A01G226800 chr5D 4351052 4352336 1284 False 1567.000000 1567 88.82000 2332 3612 1 chr5D.!!$F1 1280
46 TraesCS2A01G226800 chr5D 514936497 514937489 992 False 1476.000000 1476 93.75600 2634 3611 1 chr5D.!!$F6 977
47 TraesCS2A01G226800 chr5D 250593203 250593711 508 False 806.000000 806 95.28500 3607 4114 1 chr5D.!!$F4 507
48 TraesCS2A01G226800 chr5D 544685933 544686441 508 True 800.000000 800 95.08800 3607 4114 1 chr5D.!!$R11 507
49 TraesCS2A01G226800 chr5D 7592846 7593433 587 False 433.000000 457 93.21150 7784 8498 2 chr5D.!!$F8 714
50 TraesCS2A01G226800 chr7B 60425524 60426807 1283 False 1543.000000 1543 88.42300 2332 3612 1 chr7B.!!$F1 1280
51 TraesCS2A01G226800 chr5A 475316812 475317321 509 True 819.000000 819 95.68600 3606 4114 1 chr5A.!!$R1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 436 0.108709 GCGGCAAAAATGGCATCTCA 60.109 50.0 0.00 0.00 0.00 3.27 F
970 3395 0.469144 GGGTGGGTCAAAGGCTCAAA 60.469 55.0 0.00 0.00 0.00 2.69 F
2205 5103 0.323908 CTCTCTCCAACTCCTCCCGT 60.324 60.0 0.00 0.00 0.00 5.28 F
3188 6205 0.114364 TCACTGCTCCACCACTCCTA 59.886 55.0 0.00 0.00 0.00 2.94 F
4094 8758 0.033894 GGTCGGACTCTTCTCCTCCT 60.034 60.0 8.23 0.00 0.00 3.69 F
5661 10413 0.103572 GGTAGCGCGGGTTATCTTCA 59.896 55.0 8.83 0.00 0.00 3.02 F
5781 10533 0.102300 GTGTGGCGCTTTCCAGTTTT 59.898 50.0 7.64 0.00 36.67 2.43 F
5873 10625 0.313987 ATGGCTGCATGCATCGATTG 59.686 50.0 22.97 9.56 45.15 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1305 3735 0.096281 CGACCAACACACACACACAC 59.904 55.000 0.00 0.00 0.00 3.82 R
2887 5889 1.072806 AGATGGCAGAGCACTGTGAAA 59.927 47.619 12.86 0.00 45.04 2.69 R
4075 8739 0.033894 AGGAGGAGAAGAGTCCGACC 60.034 60.000 0.00 0.00 42.05 4.79 R
4113 8777 0.037882 CGGGATCATGATCACTCGGG 60.038 60.000 30.30 14.74 39.06 5.14 R
5762 10514 0.102300 AAAACTGGAAAGCGCCACAC 59.898 50.000 2.29 0.00 33.52 3.82 R
7188 11957 4.082895 CCTCTTCAAAACCTGCATCAAGAG 60.083 45.833 0.00 0.00 36.62 2.85 R
7512 13043 6.876257 GGTACTCTATTCTTATGCCAAGGATG 59.124 42.308 0.00 0.00 0.00 3.51 R
7801 13332 2.075355 ATGGGTCCCCTGCGTTTTCA 62.075 55.000 5.13 0.00 36.94 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
203 205 8.895737 AGACGACATTTAGAAAACCTTACAAAA 58.104 29.630 0.00 0.00 0.00 2.44
432 436 0.108709 GCGGCAAAAATGGCATCTCA 60.109 50.000 0.00 0.00 0.00 3.27
883 3308 3.312736 TTGGCTCAATTATCCCCTTCC 57.687 47.619 0.00 0.00 0.00 3.46
884 3309 2.502745 TGGCTCAATTATCCCCTTCCT 58.497 47.619 0.00 0.00 0.00 3.36
885 3310 2.858768 TGGCTCAATTATCCCCTTCCTT 59.141 45.455 0.00 0.00 0.00 3.36
886 3311 3.117512 TGGCTCAATTATCCCCTTCCTTC 60.118 47.826 0.00 0.00 0.00 3.46
887 3312 3.491342 GCTCAATTATCCCCTTCCTTCC 58.509 50.000 0.00 0.00 0.00 3.46
888 3313 3.139211 GCTCAATTATCCCCTTCCTTCCT 59.861 47.826 0.00 0.00 0.00 3.36
889 3314 4.386873 GCTCAATTATCCCCTTCCTTCCTT 60.387 45.833 0.00 0.00 0.00 3.36
890 3315 5.380900 CTCAATTATCCCCTTCCTTCCTTC 58.619 45.833 0.00 0.00 0.00 3.46
891 3316 4.168088 TCAATTATCCCCTTCCTTCCTTCC 59.832 45.833 0.00 0.00 0.00 3.46
892 3317 3.526360 TTATCCCCTTCCTTCCTTCCT 57.474 47.619 0.00 0.00 0.00 3.36
893 3318 2.385263 ATCCCCTTCCTTCCTTCCTT 57.615 50.000 0.00 0.00 0.00 3.36
894 3319 1.670059 TCCCCTTCCTTCCTTCCTTC 58.330 55.000 0.00 0.00 0.00 3.46
895 3320 0.626382 CCCCTTCCTTCCTTCCTTCC 59.374 60.000 0.00 0.00 0.00 3.46
937 3362 3.474034 GCGACTGCGAGTGAGTGC 61.474 66.667 0.00 0.00 40.82 4.40
938 3363 3.168604 CGACTGCGAGTGAGTGCG 61.169 66.667 0.00 0.00 40.82 5.34
939 3364 2.255554 GACTGCGAGTGAGTGCGA 59.744 61.111 0.00 0.00 0.00 5.10
940 3365 1.799519 GACTGCGAGTGAGTGCGAG 60.800 63.158 0.00 0.00 0.00 5.03
941 3366 2.256764 CTGCGAGTGAGTGCGAGT 59.743 61.111 0.00 0.00 0.00 4.18
964 3389 4.278513 TGCGGGGTGGGTCAAAGG 62.279 66.667 0.00 0.00 0.00 3.11
966 3391 3.966543 CGGGGTGGGTCAAAGGCT 61.967 66.667 0.00 0.00 0.00 4.58
967 3392 2.035783 GGGGTGGGTCAAAGGCTC 59.964 66.667 0.00 0.00 0.00 4.70
968 3393 2.840753 GGGGTGGGTCAAAGGCTCA 61.841 63.158 0.00 0.00 0.00 4.26
969 3394 1.152830 GGGTGGGTCAAAGGCTCAA 59.847 57.895 0.00 0.00 0.00 3.02
970 3395 0.469144 GGGTGGGTCAAAGGCTCAAA 60.469 55.000 0.00 0.00 0.00 2.69
971 3396 0.961753 GGTGGGTCAAAGGCTCAAAG 59.038 55.000 0.00 0.00 0.00 2.77
1119 3549 2.670414 CTCATTTCTCTCGCGCTTCTTT 59.330 45.455 5.56 0.00 0.00 2.52
1120 3550 3.067106 TCATTTCTCTCGCGCTTCTTTT 58.933 40.909 5.56 0.00 0.00 2.27
1121 3551 3.123621 TCATTTCTCTCGCGCTTCTTTTC 59.876 43.478 5.56 0.00 0.00 2.29
1122 3552 2.440539 TTCTCTCGCGCTTCTTTTCT 57.559 45.000 5.56 0.00 0.00 2.52
1123 3553 2.440539 TCTCTCGCGCTTCTTTTCTT 57.559 45.000 5.56 0.00 0.00 2.52
1233 3663 9.959749 GTAAATCATCAACTTTGTTTTACCTCA 57.040 29.630 0.00 0.00 0.00 3.86
1303 3733 8.675705 TTTTCATGTATGTATCCCTATGTGTG 57.324 34.615 0.00 0.00 0.00 3.82
1304 3734 6.994421 TCATGTATGTATCCCTATGTGTGT 57.006 37.500 0.00 0.00 0.00 3.72
1305 3735 6.758254 TCATGTATGTATCCCTATGTGTGTG 58.242 40.000 0.00 0.00 0.00 3.82
1306 3736 6.326323 TCATGTATGTATCCCTATGTGTGTGT 59.674 38.462 0.00 0.00 0.00 3.72
1307 3737 5.912892 TGTATGTATCCCTATGTGTGTGTG 58.087 41.667 0.00 0.00 0.00 3.82
1308 3738 5.423931 TGTATGTATCCCTATGTGTGTGTGT 59.576 40.000 0.00 0.00 0.00 3.72
1309 3739 4.200838 TGTATCCCTATGTGTGTGTGTG 57.799 45.455 0.00 0.00 0.00 3.82
1310 3740 3.580895 TGTATCCCTATGTGTGTGTGTGT 59.419 43.478 0.00 0.00 0.00 3.72
1311 3741 2.542020 TCCCTATGTGTGTGTGTGTG 57.458 50.000 0.00 0.00 0.00 3.82
1312 3742 1.765904 TCCCTATGTGTGTGTGTGTGT 59.234 47.619 0.00 0.00 0.00 3.72
1313 3743 1.872952 CCCTATGTGTGTGTGTGTGTG 59.127 52.381 0.00 0.00 0.00 3.82
1314 3744 2.560504 CCTATGTGTGTGTGTGTGTGT 58.439 47.619 0.00 0.00 0.00 3.72
1315 3745 2.287644 CCTATGTGTGTGTGTGTGTGTG 59.712 50.000 0.00 0.00 0.00 3.82
1316 3746 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
1317 3747 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1424 3856 9.952030 TTATATCTTGTGTTGTATTTGACCTGA 57.048 29.630 0.00 0.00 0.00 3.86
1471 3903 1.630369 CTTGGGTGGAGACAGGAATGA 59.370 52.381 0.00 0.00 44.46 2.57
1489 3921 1.685517 TGATGAGCTCAAGATCGGGAG 59.314 52.381 22.50 11.09 32.18 4.30
1538 3970 2.888447 GCCCACACTCTCACTGCCT 61.888 63.158 0.00 0.00 0.00 4.75
1580 4012 8.050316 AGACCAAGACCATAAATCCTTATGAT 57.950 34.615 6.47 0.00 44.99 2.45
1714 4146 5.735766 AGTACTCCCTCTGCAAAGAAATAC 58.264 41.667 0.00 0.00 0.00 1.89
1854 4290 4.410555 TGTATATGTACTGGTCATTGGCCA 59.589 41.667 10.11 10.11 34.42 5.36
1965 4404 1.001248 TAGCCTACTTGCCTCCGGT 59.999 57.895 0.00 0.00 0.00 5.28
2075 4946 2.607750 TGCCCTTCTCGCCTCCTT 60.608 61.111 0.00 0.00 0.00 3.36
2152 5023 0.464554 GGCTCTCGATCCCCTTTTGG 60.465 60.000 0.00 0.00 39.97 3.28
2153 5024 0.541863 GCTCTCGATCCCCTTTTGGA 59.458 55.000 0.00 0.00 44.07 3.53
2205 5103 0.323908 CTCTCTCCAACTCCTCCCGT 60.324 60.000 0.00 0.00 0.00 5.28
2426 5427 1.708341 ATGCTGAGTTTGTGGGCTTT 58.292 45.000 0.00 0.00 0.00 3.51
2523 5525 2.691732 CAGTGGCCCCAATCCCAT 59.308 61.111 0.00 0.00 32.95 4.00
2624 5626 6.043590 TGGATGCTTATGATCAACAGGTATCT 59.956 38.462 15.19 0.00 0.00 1.98
2709 5711 0.532115 TGATGCTCGAGCTGCTGTTA 59.468 50.000 35.27 16.07 42.66 2.41
3010 6012 6.627087 TCAGAGGGTTCATGAGTTCTTATT 57.373 37.500 0.00 0.00 0.00 1.40
3021 6023 3.057104 TGAGTTCTTATTTCGTCTCCGCA 60.057 43.478 0.00 0.00 0.00 5.69
3058 6060 1.601759 GGGCTCACTTGCTTGCTCA 60.602 57.895 0.00 0.00 0.00 4.26
3188 6205 0.114364 TCACTGCTCCACCACTCCTA 59.886 55.000 0.00 0.00 0.00 2.94
3259 6278 2.292916 GCGCCGTGACACTTTTTGC 61.293 57.895 3.68 0.00 0.00 3.68
3702 8365 1.205655 CTCCGATGGTTCTCTTGAGCA 59.794 52.381 0.00 0.00 0.00 4.26
3761 8424 1.639298 GCAGGGGCGCGATTATGATC 61.639 60.000 12.10 0.00 0.00 2.92
3975 8639 3.456277 CCCTCTATGGTCTTAAACAGGCT 59.544 47.826 0.00 0.00 0.00 4.58
3980 8644 2.334977 TGGTCTTAAACAGGCTCCTCA 58.665 47.619 0.00 0.00 0.00 3.86
4037 8701 3.419793 CTGGTTTCTTGCCCAGTGA 57.580 52.632 0.00 0.00 42.72 3.41
4038 8702 1.915141 CTGGTTTCTTGCCCAGTGAT 58.085 50.000 0.00 0.00 42.72 3.06
4039 8703 1.815003 CTGGTTTCTTGCCCAGTGATC 59.185 52.381 0.00 0.00 42.72 2.92
4040 8704 1.144708 TGGTTTCTTGCCCAGTGATCA 59.855 47.619 0.00 0.00 0.00 2.92
4041 8705 2.225091 TGGTTTCTTGCCCAGTGATCAT 60.225 45.455 0.00 0.00 0.00 2.45
4042 8706 2.165030 GGTTTCTTGCCCAGTGATCATG 59.835 50.000 0.00 0.00 0.00 3.07
4043 8707 3.084039 GTTTCTTGCCCAGTGATCATGA 58.916 45.455 0.00 0.00 0.00 3.07
4044 8708 3.657398 TTCTTGCCCAGTGATCATGAT 57.343 42.857 8.25 8.25 0.00 2.45
4045 8709 3.204306 TCTTGCCCAGTGATCATGATC 57.796 47.619 25.91 25.91 38.29 2.92
4046 8710 2.158711 TCTTGCCCAGTGATCATGATCC 60.159 50.000 28.61 20.44 37.02 3.36
4047 8711 0.475475 TGCCCAGTGATCATGATCCC 59.525 55.000 28.61 19.95 37.02 3.85
4048 8712 0.604780 GCCCAGTGATCATGATCCCG 60.605 60.000 28.61 17.87 37.02 5.14
4049 8713 1.051008 CCCAGTGATCATGATCCCGA 58.949 55.000 28.61 11.19 37.02 5.14
4050 8714 1.001746 CCCAGTGATCATGATCCCGAG 59.998 57.143 28.61 16.88 37.02 4.63
4051 8715 1.690893 CCAGTGATCATGATCCCGAGT 59.309 52.381 28.61 13.35 37.02 4.18
4052 8716 2.103771 CCAGTGATCATGATCCCGAGTT 59.896 50.000 28.61 8.58 37.02 3.01
4053 8717 3.129109 CAGTGATCATGATCCCGAGTTG 58.871 50.000 28.61 15.27 37.02 3.16
4054 8718 2.768527 AGTGATCATGATCCCGAGTTGT 59.231 45.455 28.61 1.76 37.02 3.32
4055 8719 3.198635 AGTGATCATGATCCCGAGTTGTT 59.801 43.478 28.61 1.07 37.02 2.83
4056 8720 3.941483 GTGATCATGATCCCGAGTTGTTT 59.059 43.478 28.61 0.00 37.02 2.83
4057 8721 3.940852 TGATCATGATCCCGAGTTGTTTG 59.059 43.478 28.61 0.00 37.02 2.93
4058 8722 3.417069 TCATGATCCCGAGTTGTTTGT 57.583 42.857 0.00 0.00 0.00 2.83
4059 8723 3.750371 TCATGATCCCGAGTTGTTTGTT 58.250 40.909 0.00 0.00 0.00 2.83
4060 8724 3.751175 TCATGATCCCGAGTTGTTTGTTC 59.249 43.478 0.00 0.00 0.00 3.18
4061 8725 3.201353 TGATCCCGAGTTGTTTGTTCA 57.799 42.857 0.00 0.00 0.00 3.18
4062 8726 2.875933 TGATCCCGAGTTGTTTGTTCAC 59.124 45.455 0.00 0.00 0.00 3.18
4063 8727 2.404923 TCCCGAGTTGTTTGTTCACA 57.595 45.000 0.00 0.00 0.00 3.58
4064 8728 2.011222 TCCCGAGTTGTTTGTTCACAC 58.989 47.619 0.00 0.00 0.00 3.82
4065 8729 1.267832 CCCGAGTTGTTTGTTCACACG 60.268 52.381 0.00 0.00 0.00 4.49
4066 8730 1.395608 CCGAGTTGTTTGTTCACACGT 59.604 47.619 0.00 0.00 0.00 4.49
4067 8731 2.536130 CCGAGTTGTTTGTTCACACGTC 60.536 50.000 0.00 0.00 0.00 4.34
4068 8732 2.347452 CGAGTTGTTTGTTCACACGTCT 59.653 45.455 0.00 0.00 0.00 4.18
4069 8733 3.541516 CGAGTTGTTTGTTCACACGTCTC 60.542 47.826 0.00 0.00 0.00 3.36
4070 8734 2.676342 AGTTGTTTGTTCACACGTCTCC 59.324 45.455 0.00 0.00 0.00 3.71
4071 8735 2.676342 GTTGTTTGTTCACACGTCTCCT 59.324 45.455 0.00 0.00 0.00 3.69
4072 8736 2.546778 TGTTTGTTCACACGTCTCCTC 58.453 47.619 0.00 0.00 0.00 3.71
4073 8737 1.521423 GTTTGTTCACACGTCTCCTCG 59.479 52.381 0.00 0.00 0.00 4.63
4074 8738 0.742505 TTGTTCACACGTCTCCTCGT 59.257 50.000 0.00 0.00 45.10 4.18
4080 8744 3.054503 ACGTCTCCTCGTGGTCGG 61.055 66.667 16.91 5.85 42.56 4.79
4081 8745 2.745100 CGTCTCCTCGTGGTCGGA 60.745 66.667 2.99 0.00 37.69 4.55
4082 8746 2.876219 GTCTCCTCGTGGTCGGAC 59.124 66.667 2.99 0.00 37.69 4.79
4083 8747 1.674980 GTCTCCTCGTGGTCGGACT 60.675 63.158 8.23 0.00 37.69 3.85
4084 8748 1.376942 TCTCCTCGTGGTCGGACTC 60.377 63.158 8.23 0.00 37.69 3.36
4085 8749 1.377463 CTCCTCGTGGTCGGACTCT 60.377 63.158 8.23 0.00 37.69 3.24
4086 8750 0.961358 CTCCTCGTGGTCGGACTCTT 60.961 60.000 8.23 0.00 37.69 2.85
4087 8751 0.959372 TCCTCGTGGTCGGACTCTTC 60.959 60.000 8.23 0.00 37.69 2.87
4088 8752 0.961358 CCTCGTGGTCGGACTCTTCT 60.961 60.000 8.23 0.00 37.69 2.85
4089 8753 0.448593 CTCGTGGTCGGACTCTTCTC 59.551 60.000 8.23 0.00 37.69 2.87
4090 8754 0.959372 TCGTGGTCGGACTCTTCTCC 60.959 60.000 8.23 0.00 37.69 3.71
4091 8755 0.961358 CGTGGTCGGACTCTTCTCCT 60.961 60.000 8.23 0.00 0.00 3.69
4092 8756 0.812549 GTGGTCGGACTCTTCTCCTC 59.187 60.000 8.23 0.00 0.00 3.71
4093 8757 0.323542 TGGTCGGACTCTTCTCCTCC 60.324 60.000 8.23 0.00 0.00 4.30
4094 8758 0.033894 GGTCGGACTCTTCTCCTCCT 60.034 60.000 8.23 0.00 0.00 3.69
4095 8759 1.385528 GTCGGACTCTTCTCCTCCTC 58.614 60.000 0.00 0.00 0.00 3.71
4096 8760 1.064979 GTCGGACTCTTCTCCTCCTCT 60.065 57.143 0.00 0.00 0.00 3.69
4097 8761 2.171027 GTCGGACTCTTCTCCTCCTCTA 59.829 54.545 0.00 0.00 0.00 2.43
4098 8762 3.050089 TCGGACTCTTCTCCTCCTCTAT 58.950 50.000 0.00 0.00 0.00 1.98
4099 8763 3.146066 CGGACTCTTCTCCTCCTCTATG 58.854 54.545 0.00 0.00 0.00 2.23
4100 8764 3.434453 CGGACTCTTCTCCTCCTCTATGT 60.434 52.174 0.00 0.00 0.00 2.29
4101 8765 4.542697 GGACTCTTCTCCTCCTCTATGTT 58.457 47.826 0.00 0.00 0.00 2.71
4102 8766 4.340950 GGACTCTTCTCCTCCTCTATGTTG 59.659 50.000 0.00 0.00 0.00 3.33
4103 8767 5.197451 GACTCTTCTCCTCCTCTATGTTGA 58.803 45.833 0.00 0.00 0.00 3.18
4104 8768 5.776358 ACTCTTCTCCTCCTCTATGTTGAT 58.224 41.667 0.00 0.00 0.00 2.57
4105 8769 5.598005 ACTCTTCTCCTCCTCTATGTTGATG 59.402 44.000 0.00 0.00 0.00 3.07
4106 8770 5.770919 TCTTCTCCTCCTCTATGTTGATGA 58.229 41.667 0.00 0.00 0.00 2.92
4107 8771 5.596361 TCTTCTCCTCCTCTATGTTGATGAC 59.404 44.000 0.00 0.00 0.00 3.06
4108 8772 4.871822 TCTCCTCCTCTATGTTGATGACA 58.128 43.478 0.00 0.00 43.71 3.58
4118 8782 3.183793 TGTTGATGACATGATCCCGAG 57.816 47.619 0.00 0.00 32.00 4.63
4133 8797 0.961753 CCGAGTGATCATGATCCCGA 59.038 55.000 28.61 11.19 37.02 5.14
4214 8962 2.094545 TGATCATCACTGGTGACGACTG 60.095 50.000 5.52 1.16 43.11 3.51
4622 9372 2.263153 TCGTGGCACGATCTCTCAA 58.737 52.632 36.29 14.10 46.73 3.02
4787 9537 0.676184 AGACTGCAGTTTCTCGCTCA 59.324 50.000 22.65 0.00 0.00 4.26
4798 9548 0.895559 TCTCGCTCAAGCACAGAGGA 60.896 55.000 2.50 0.00 42.21 3.71
4898 9648 3.937778 ACTACCTCCACTCCTCTACTC 57.062 52.381 0.00 0.00 0.00 2.59
5563 10313 1.043022 AGGGGCTTTTCTGCACTTTG 58.957 50.000 0.00 0.00 36.45 2.77
5604 10354 1.616994 GCCATTGGCCCTCAGTAAAGT 60.617 52.381 17.28 0.00 44.06 2.66
5605 10355 2.369394 CCATTGGCCCTCAGTAAAGTC 58.631 52.381 0.00 0.00 0.00 3.01
5625 10377 4.697352 AGTCAGTTGCTCATTATCCAACAC 59.303 41.667 5.66 0.00 40.85 3.32
5626 10378 4.455533 GTCAGTTGCTCATTATCCAACACA 59.544 41.667 5.66 0.00 40.85 3.72
5627 10379 5.124457 GTCAGTTGCTCATTATCCAACACAT 59.876 40.000 5.66 0.00 40.85 3.21
5628 10380 6.316140 GTCAGTTGCTCATTATCCAACACATA 59.684 38.462 5.66 0.00 40.85 2.29
5629 10381 7.012704 GTCAGTTGCTCATTATCCAACACATAT 59.987 37.037 5.66 0.00 40.85 1.78
5630 10382 8.210265 TCAGTTGCTCATTATCCAACACATATA 58.790 33.333 5.66 0.00 40.85 0.86
5631 10383 8.285394 CAGTTGCTCATTATCCAACACATATAC 58.715 37.037 5.66 0.00 40.85 1.47
5632 10384 7.445402 AGTTGCTCATTATCCAACACATATACC 59.555 37.037 5.66 0.00 40.85 2.73
5633 10385 7.078249 TGCTCATTATCCAACACATATACCT 57.922 36.000 0.00 0.00 0.00 3.08
5634 10386 8.201242 TGCTCATTATCCAACACATATACCTA 57.799 34.615 0.00 0.00 0.00 3.08
5635 10387 8.314021 TGCTCATTATCCAACACATATACCTAG 58.686 37.037 0.00 0.00 0.00 3.02
5636 10388 7.278868 GCTCATTATCCAACACATATACCTAGC 59.721 40.741 0.00 0.00 0.00 3.42
5637 10389 7.620880 TCATTATCCAACACATATACCTAGCC 58.379 38.462 0.00 0.00 0.00 3.93
5638 10390 7.457852 TCATTATCCAACACATATACCTAGCCT 59.542 37.037 0.00 0.00 0.00 4.58
5639 10391 4.955811 TCCAACACATATACCTAGCCTG 57.044 45.455 0.00 0.00 0.00 4.85
5640 10392 4.552674 TCCAACACATATACCTAGCCTGA 58.447 43.478 0.00 0.00 0.00 3.86
5641 10393 4.344102 TCCAACACATATACCTAGCCTGAC 59.656 45.833 0.00 0.00 0.00 3.51
5642 10394 4.299155 CAACACATATACCTAGCCTGACG 58.701 47.826 0.00 0.00 0.00 4.35
5643 10395 2.891580 ACACATATACCTAGCCTGACGG 59.108 50.000 0.00 0.00 0.00 4.79
5644 10396 2.891580 CACATATACCTAGCCTGACGGT 59.108 50.000 0.00 0.00 34.86 4.83
5645 10397 4.077108 CACATATACCTAGCCTGACGGTA 58.923 47.826 0.00 0.00 37.66 4.02
5646 10398 4.156190 CACATATACCTAGCCTGACGGTAG 59.844 50.000 0.00 0.00 41.43 3.18
5647 10399 1.618487 ATACCTAGCCTGACGGTAGC 58.382 55.000 0.00 0.00 40.60 3.58
5648 10400 0.816825 TACCTAGCCTGACGGTAGCG 60.817 60.000 13.69 13.69 40.60 4.26
5649 10401 2.026301 CTAGCCTGACGGTAGCGC 59.974 66.667 15.35 0.00 35.85 5.92
5650 10402 3.808771 CTAGCCTGACGGTAGCGCG 62.809 68.421 15.35 0.00 35.85 6.86
5654 10406 4.430765 CTGACGGTAGCGCGGGTT 62.431 66.667 15.35 0.00 0.00 4.11
5655 10407 3.055080 CTGACGGTAGCGCGGGTTA 62.055 63.158 15.35 0.00 0.00 2.85
5656 10408 2.345880 CTGACGGTAGCGCGGGTTAT 62.346 60.000 15.35 0.00 0.00 1.89
5657 10409 1.659644 GACGGTAGCGCGGGTTATC 60.660 63.158 15.35 0.00 0.00 1.75
5658 10410 2.068277 GACGGTAGCGCGGGTTATCT 62.068 60.000 15.35 0.00 0.00 1.98
5659 10411 1.066918 CGGTAGCGCGGGTTATCTT 59.933 57.895 8.83 0.00 0.00 2.40
5660 10412 0.938168 CGGTAGCGCGGGTTATCTTC 60.938 60.000 8.83 0.00 0.00 2.87
5661 10413 0.103572 GGTAGCGCGGGTTATCTTCA 59.896 55.000 8.83 0.00 0.00 3.02
5662 10414 1.488527 GTAGCGCGGGTTATCTTCAG 58.511 55.000 8.83 0.00 0.00 3.02
5663 10415 0.249322 TAGCGCGGGTTATCTTCAGC 60.249 55.000 8.83 0.00 0.00 4.26
5664 10416 2.534903 GCGCGGGTTATCTTCAGCC 61.535 63.158 8.83 0.00 0.00 4.85
5670 10422 3.971032 GGGTTATCTTCAGCCGATTTG 57.029 47.619 0.00 0.00 0.00 2.32
5671 10423 2.618709 GGGTTATCTTCAGCCGATTTGG 59.381 50.000 0.00 0.00 42.50 3.28
5672 10424 2.618709 GGTTATCTTCAGCCGATTTGGG 59.381 50.000 0.00 0.00 38.63 4.12
5679 10431 3.508840 GCCGATTTGGGTGGCGAG 61.509 66.667 0.00 0.00 39.30 5.03
5680 10432 3.508840 CCGATTTGGGTGGCGAGC 61.509 66.667 0.00 0.00 0.00 5.03
5681 10433 2.436646 CGATTTGGGTGGCGAGCT 60.437 61.111 0.00 0.00 0.00 4.09
5682 10434 1.153449 CGATTTGGGTGGCGAGCTA 60.153 57.895 0.00 0.00 0.00 3.32
5683 10435 0.742990 CGATTTGGGTGGCGAGCTAA 60.743 55.000 0.00 0.00 0.00 3.09
5684 10436 1.680338 GATTTGGGTGGCGAGCTAAT 58.320 50.000 0.00 0.00 0.00 1.73
5685 10437 2.805295 CGATTTGGGTGGCGAGCTAATA 60.805 50.000 0.00 0.00 0.00 0.98
5686 10438 2.791347 TTTGGGTGGCGAGCTAATAA 57.209 45.000 0.00 0.00 0.00 1.40
5687 10439 3.290948 TTTGGGTGGCGAGCTAATAAT 57.709 42.857 0.00 0.00 0.00 1.28
5688 10440 4.425180 TTTGGGTGGCGAGCTAATAATA 57.575 40.909 0.00 0.00 0.00 0.98
5689 10441 3.678056 TGGGTGGCGAGCTAATAATAG 57.322 47.619 0.00 0.00 0.00 1.73
5690 10442 2.301870 TGGGTGGCGAGCTAATAATAGG 59.698 50.000 0.00 0.00 0.00 2.57
5691 10443 2.347731 GGTGGCGAGCTAATAATAGGC 58.652 52.381 0.00 0.00 0.00 3.93
5692 10444 2.028020 GGTGGCGAGCTAATAATAGGCT 60.028 50.000 0.00 0.00 39.16 4.58
5693 10445 3.194968 GGTGGCGAGCTAATAATAGGCTA 59.805 47.826 0.00 0.00 36.37 3.93
5694 10446 4.322499 GGTGGCGAGCTAATAATAGGCTAA 60.322 45.833 0.00 0.00 36.37 3.09
5695 10447 4.865365 GTGGCGAGCTAATAATAGGCTAAG 59.135 45.833 0.00 0.00 36.37 2.18
5696 10448 4.527038 TGGCGAGCTAATAATAGGCTAAGT 59.473 41.667 0.00 0.00 36.37 2.24
5697 10449 4.865365 GGCGAGCTAATAATAGGCTAAGTG 59.135 45.833 0.00 0.00 36.37 3.16
5698 10450 5.471257 GCGAGCTAATAATAGGCTAAGTGT 58.529 41.667 0.00 0.00 36.37 3.55
5699 10451 5.346281 GCGAGCTAATAATAGGCTAAGTGTG 59.654 44.000 0.00 0.00 36.37 3.82
5700 10452 6.448006 CGAGCTAATAATAGGCTAAGTGTGT 58.552 40.000 0.00 0.00 36.37 3.72
5701 10453 7.591165 CGAGCTAATAATAGGCTAAGTGTGTA 58.409 38.462 0.00 0.00 36.37 2.90
5702 10454 7.751348 CGAGCTAATAATAGGCTAAGTGTGTAG 59.249 40.741 0.00 0.00 36.37 2.74
5703 10455 7.897864 AGCTAATAATAGGCTAAGTGTGTAGG 58.102 38.462 0.00 0.00 34.31 3.18
5704 10456 6.590677 GCTAATAATAGGCTAAGTGTGTAGGC 59.409 42.308 0.00 0.00 44.83 3.93
5705 10457 6.494666 AATAATAGGCTAAGTGTGTAGGCA 57.505 37.500 0.00 0.00 46.43 4.75
5706 10458 6.688073 ATAATAGGCTAAGTGTGTAGGCAT 57.312 37.500 0.00 0.00 46.43 4.40
5707 10459 2.990066 AGGCTAAGTGTGTAGGCATC 57.010 50.000 8.29 0.00 46.43 3.91
5708 10460 1.137086 AGGCTAAGTGTGTAGGCATCG 59.863 52.381 8.29 0.00 46.43 3.84
5709 10461 1.134788 GGCTAAGTGTGTAGGCATCGT 60.135 52.381 1.29 0.00 44.12 3.73
5710 10462 2.100252 GGCTAAGTGTGTAGGCATCGTA 59.900 50.000 1.29 0.00 44.12 3.43
5711 10463 3.372954 GCTAAGTGTGTAGGCATCGTAG 58.627 50.000 0.00 0.00 0.00 3.51
5712 10464 2.295253 AAGTGTGTAGGCATCGTAGC 57.705 50.000 0.00 0.00 0.00 3.58
5713 10465 1.475403 AGTGTGTAGGCATCGTAGCT 58.525 50.000 0.00 0.00 34.17 3.32
5714 10466 1.825474 AGTGTGTAGGCATCGTAGCTT 59.175 47.619 0.00 0.00 34.17 3.74
5715 10467 3.021695 AGTGTGTAGGCATCGTAGCTTA 58.978 45.455 0.00 0.00 34.17 3.09
5716 10468 3.637229 AGTGTGTAGGCATCGTAGCTTAT 59.363 43.478 0.00 0.00 34.17 1.73
5717 10469 4.099573 AGTGTGTAGGCATCGTAGCTTATT 59.900 41.667 0.00 0.00 34.17 1.40
5718 10470 4.809426 GTGTGTAGGCATCGTAGCTTATTT 59.191 41.667 0.00 0.00 34.17 1.40
5719 10471 5.293569 GTGTGTAGGCATCGTAGCTTATTTT 59.706 40.000 0.00 0.00 34.17 1.82
5720 10472 5.878116 TGTGTAGGCATCGTAGCTTATTTTT 59.122 36.000 0.00 0.00 34.17 1.94
5721 10473 7.010738 GTGTGTAGGCATCGTAGCTTATTTTTA 59.989 37.037 0.00 0.00 34.17 1.52
5722 10474 7.713507 TGTGTAGGCATCGTAGCTTATTTTTAT 59.286 33.333 0.00 0.00 34.17 1.40
5723 10475 9.199982 GTGTAGGCATCGTAGCTTATTTTTATA 57.800 33.333 0.00 0.00 34.17 0.98
5724 10476 9.938280 TGTAGGCATCGTAGCTTATTTTTATAT 57.062 29.630 0.00 0.00 34.17 0.86
5727 10479 8.237267 AGGCATCGTAGCTTATTTTTATATTGC 58.763 33.333 0.00 0.00 34.17 3.56
5728 10480 7.484959 GGCATCGTAGCTTATTTTTATATTGCC 59.515 37.037 0.00 0.00 36.05 4.52
5729 10481 7.216317 GCATCGTAGCTTATTTTTATATTGCCG 59.784 37.037 0.00 0.00 0.00 5.69
5730 10482 7.124347 TCGTAGCTTATTTTTATATTGCCGG 57.876 36.000 0.00 0.00 0.00 6.13
5731 10483 6.930164 TCGTAGCTTATTTTTATATTGCCGGA 59.070 34.615 5.05 0.00 0.00 5.14
5732 10484 7.604927 TCGTAGCTTATTTTTATATTGCCGGAT 59.395 33.333 5.05 0.00 0.00 4.18
5733 10485 7.692291 CGTAGCTTATTTTTATATTGCCGGATG 59.308 37.037 5.05 0.00 0.00 3.51
5734 10486 7.524717 AGCTTATTTTTATATTGCCGGATGT 57.475 32.000 5.05 0.00 0.00 3.06
5735 10487 7.370383 AGCTTATTTTTATATTGCCGGATGTG 58.630 34.615 5.05 0.00 0.00 3.21
5736 10488 6.586082 GCTTATTTTTATATTGCCGGATGTGG 59.414 38.462 5.05 0.00 0.00 4.17
5745 10497 3.792716 CCGGATGTGGCACTTTTTC 57.207 52.632 19.83 10.06 0.00 2.29
5746 10498 0.958091 CCGGATGTGGCACTTTTTCA 59.042 50.000 19.83 0.00 0.00 2.69
5747 10499 1.068333 CCGGATGTGGCACTTTTTCAG 60.068 52.381 19.83 10.55 0.00 3.02
5748 10500 1.608590 CGGATGTGGCACTTTTTCAGT 59.391 47.619 19.83 0.00 35.35 3.41
5749 10501 2.350772 CGGATGTGGCACTTTTTCAGTC 60.351 50.000 19.83 4.19 30.92 3.51
5750 10502 2.887152 GGATGTGGCACTTTTTCAGTCT 59.113 45.455 19.83 0.00 30.92 3.24
5751 10503 3.319122 GGATGTGGCACTTTTTCAGTCTT 59.681 43.478 19.83 0.00 30.92 3.01
5752 10504 4.518970 GGATGTGGCACTTTTTCAGTCTTA 59.481 41.667 19.83 0.00 30.92 2.10
5753 10505 5.183904 GGATGTGGCACTTTTTCAGTCTTAT 59.816 40.000 19.83 0.00 30.92 1.73
5754 10506 6.374333 GGATGTGGCACTTTTTCAGTCTTATA 59.626 38.462 19.83 0.00 30.92 0.98
5755 10507 7.067494 GGATGTGGCACTTTTTCAGTCTTATAT 59.933 37.037 19.83 0.00 30.92 0.86
5756 10508 7.377766 TGTGGCACTTTTTCAGTCTTATATC 57.622 36.000 19.83 0.00 30.92 1.63
5757 10509 6.939730 TGTGGCACTTTTTCAGTCTTATATCA 59.060 34.615 19.83 0.00 30.92 2.15
5758 10510 7.094805 TGTGGCACTTTTTCAGTCTTATATCAC 60.095 37.037 19.83 0.00 30.92 3.06
5759 10511 6.374333 TGGCACTTTTTCAGTCTTATATCACC 59.626 38.462 0.00 0.00 30.92 4.02
5760 10512 6.374333 GGCACTTTTTCAGTCTTATATCACCA 59.626 38.462 0.00 0.00 30.92 4.17
5761 10513 7.414540 GGCACTTTTTCAGTCTTATATCACCAG 60.415 40.741 0.00 0.00 30.92 4.00
5762 10514 7.414540 GCACTTTTTCAGTCTTATATCACCAGG 60.415 40.741 0.00 0.00 30.92 4.45
5763 10515 7.607991 CACTTTTTCAGTCTTATATCACCAGGT 59.392 37.037 0.00 0.00 30.92 4.00
5764 10516 7.607991 ACTTTTTCAGTCTTATATCACCAGGTG 59.392 37.037 14.19 14.19 34.45 4.00
5765 10517 6.620877 TTTCAGTCTTATATCACCAGGTGT 57.379 37.500 19.65 9.43 34.79 4.16
5766 10518 5.598416 TCAGTCTTATATCACCAGGTGTG 57.402 43.478 19.65 7.07 46.88 3.82
5775 10527 3.365265 CCAGGTGTGGCGCTTTCC 61.365 66.667 7.64 5.33 36.89 3.13
5776 10528 2.594303 CAGGTGTGGCGCTTTCCA 60.594 61.111 7.64 0.00 0.00 3.53
5777 10529 2.281761 AGGTGTGGCGCTTTCCAG 60.282 61.111 7.64 0.00 36.67 3.86
5778 10530 2.594592 GGTGTGGCGCTTTCCAGT 60.595 61.111 7.64 0.00 36.67 4.00
5779 10531 2.193536 GGTGTGGCGCTTTCCAGTT 61.194 57.895 7.64 0.00 36.67 3.16
5780 10532 1.733526 GTGTGGCGCTTTCCAGTTT 59.266 52.632 7.64 0.00 36.67 2.66
5781 10533 0.102300 GTGTGGCGCTTTCCAGTTTT 59.898 50.000 7.64 0.00 36.67 2.43
5782 10534 1.335496 GTGTGGCGCTTTCCAGTTTTA 59.665 47.619 7.64 0.00 36.67 1.52
5783 10535 2.030274 GTGTGGCGCTTTCCAGTTTTAT 60.030 45.455 7.64 0.00 36.67 1.40
5784 10536 2.625790 TGTGGCGCTTTCCAGTTTTATT 59.374 40.909 7.64 0.00 36.67 1.40
5785 10537 3.068873 TGTGGCGCTTTCCAGTTTTATTT 59.931 39.130 7.64 0.00 36.67 1.40
5786 10538 4.278669 TGTGGCGCTTTCCAGTTTTATTTA 59.721 37.500 7.64 0.00 36.67 1.40
5787 10539 4.619760 GTGGCGCTTTCCAGTTTTATTTAC 59.380 41.667 7.64 0.00 36.67 2.01
5788 10540 4.521256 TGGCGCTTTCCAGTTTTATTTACT 59.479 37.500 7.64 0.00 0.00 2.24
5789 10541 5.010213 TGGCGCTTTCCAGTTTTATTTACTT 59.990 36.000 7.64 0.00 0.00 2.24
5790 10542 5.924254 GGCGCTTTCCAGTTTTATTTACTTT 59.076 36.000 7.64 0.00 0.00 2.66
5791 10543 6.089016 GGCGCTTTCCAGTTTTATTTACTTTC 59.911 38.462 7.64 0.00 0.00 2.62
5792 10544 6.183359 GCGCTTTCCAGTTTTATTTACTTTCG 60.183 38.462 0.00 0.00 0.00 3.46
5793 10545 7.073265 CGCTTTCCAGTTTTATTTACTTTCGA 58.927 34.615 0.00 0.00 0.00 3.71
5794 10546 7.059147 CGCTTTCCAGTTTTATTTACTTTCGAC 59.941 37.037 0.00 0.00 0.00 4.20
5795 10547 8.074370 GCTTTCCAGTTTTATTTACTTTCGACT 58.926 33.333 0.00 0.00 0.00 4.18
5798 10550 9.768662 TTCCAGTTTTATTTACTTTCGACTACT 57.231 29.630 0.00 0.00 0.00 2.57
5799 10551 9.199982 TCCAGTTTTATTTACTTTCGACTACTG 57.800 33.333 0.00 0.00 0.00 2.74
5800 10552 7.955864 CCAGTTTTATTTACTTTCGACTACTGC 59.044 37.037 0.00 0.00 0.00 4.40
5801 10553 8.709646 CAGTTTTATTTACTTTCGACTACTGCT 58.290 33.333 0.00 0.00 0.00 4.24
5802 10554 8.923683 AGTTTTATTTACTTTCGACTACTGCTC 58.076 33.333 0.00 0.00 0.00 4.26
5803 10555 8.706035 GTTTTATTTACTTTCGACTACTGCTCA 58.294 33.333 0.00 0.00 0.00 4.26
5804 10556 7.807687 TTATTTACTTTCGACTACTGCTCAC 57.192 36.000 0.00 0.00 0.00 3.51
5805 10557 5.449107 TTTACTTTCGACTACTGCTCACT 57.551 39.130 0.00 0.00 0.00 3.41
5806 10558 6.564709 TTTACTTTCGACTACTGCTCACTA 57.435 37.500 0.00 0.00 0.00 2.74
5807 10559 6.754702 TTACTTTCGACTACTGCTCACTAT 57.245 37.500 0.00 0.00 0.00 2.12
5808 10560 4.987832 ACTTTCGACTACTGCTCACTATG 58.012 43.478 0.00 0.00 0.00 2.23
5809 10561 4.700692 ACTTTCGACTACTGCTCACTATGA 59.299 41.667 0.00 0.00 0.00 2.15
5810 10562 4.884458 TTCGACTACTGCTCACTATGAG 57.116 45.455 1.29 1.29 46.90 2.90
5822 10574 4.125703 CTCACTATGAGCATCTTTGGACC 58.874 47.826 0.00 0.00 37.72 4.46
5823 10575 3.776969 TCACTATGAGCATCTTTGGACCT 59.223 43.478 0.00 0.00 34.92 3.85
5824 10576 4.225942 TCACTATGAGCATCTTTGGACCTT 59.774 41.667 0.00 0.00 34.92 3.50
5825 10577 5.425217 TCACTATGAGCATCTTTGGACCTTA 59.575 40.000 0.00 0.00 34.92 2.69
5826 10578 6.100279 TCACTATGAGCATCTTTGGACCTTAT 59.900 38.462 0.00 0.00 34.92 1.73
5827 10579 6.204301 CACTATGAGCATCTTTGGACCTTATG 59.796 42.308 0.00 0.00 34.92 1.90
5828 10580 4.842531 TGAGCATCTTTGGACCTTATGA 57.157 40.909 0.00 0.00 34.92 2.15
5829 10581 4.517285 TGAGCATCTTTGGACCTTATGAC 58.483 43.478 0.00 0.00 34.92 3.06
5830 10582 3.879892 GAGCATCTTTGGACCTTATGACC 59.120 47.826 0.00 0.00 0.00 4.02
5831 10583 3.525199 AGCATCTTTGGACCTTATGACCT 59.475 43.478 0.00 0.00 0.00 3.85
5832 10584 4.018050 AGCATCTTTGGACCTTATGACCTT 60.018 41.667 0.00 0.00 0.00 3.50
5833 10585 5.191722 AGCATCTTTGGACCTTATGACCTTA 59.808 40.000 0.00 0.00 0.00 2.69
5834 10586 6.064717 GCATCTTTGGACCTTATGACCTTAT 58.935 40.000 0.00 0.00 0.00 1.73
5835 10587 6.547510 GCATCTTTGGACCTTATGACCTTATT 59.452 38.462 0.00 0.00 0.00 1.40
5836 10588 7.719633 GCATCTTTGGACCTTATGACCTTATTA 59.280 37.037 0.00 0.00 0.00 0.98
5837 10589 9.057089 CATCTTTGGACCTTATGACCTTATTAC 57.943 37.037 0.00 0.00 0.00 1.89
5838 10590 7.270047 TCTTTGGACCTTATGACCTTATTACG 58.730 38.462 0.00 0.00 0.00 3.18
5839 10591 6.549433 TTGGACCTTATGACCTTATTACGT 57.451 37.500 0.00 0.00 0.00 3.57
5840 10592 6.549433 TGGACCTTATGACCTTATTACGTT 57.451 37.500 0.00 0.00 0.00 3.99
5841 10593 6.949715 TGGACCTTATGACCTTATTACGTTT 58.050 36.000 0.00 0.00 0.00 3.60
5842 10594 7.396418 TGGACCTTATGACCTTATTACGTTTT 58.604 34.615 0.00 0.00 0.00 2.43
5843 10595 7.884354 TGGACCTTATGACCTTATTACGTTTTT 59.116 33.333 0.00 0.00 0.00 1.94
5844 10596 9.382275 GGACCTTATGACCTTATTACGTTTTTA 57.618 33.333 0.00 0.00 0.00 1.52
5866 10618 9.993454 TTTTATTTAATAATATGGCTGCATGCA 57.007 25.926 21.29 21.29 45.15 3.96
5868 10620 9.806203 TTATTTAATAATATGGCTGCATGCATC 57.194 29.630 22.97 17.75 45.15 3.91
5869 10621 4.365899 AATAATATGGCTGCATGCATCG 57.634 40.909 22.97 12.00 45.15 3.84
5870 10622 1.900245 AATATGGCTGCATGCATCGA 58.100 45.000 22.97 15.35 45.15 3.59
5871 10623 2.124277 ATATGGCTGCATGCATCGAT 57.876 45.000 22.97 21.43 45.15 3.59
5872 10624 1.900245 TATGGCTGCATGCATCGATT 58.100 45.000 22.97 7.71 45.15 3.34
5873 10625 0.313987 ATGGCTGCATGCATCGATTG 59.686 50.000 22.97 9.56 45.15 2.67
5874 10626 0.748729 TGGCTGCATGCATCGATTGA 60.749 50.000 22.97 0.00 45.15 2.57
5875 10627 0.596577 GGCTGCATGCATCGATTGAT 59.403 50.000 22.97 0.00 45.15 2.57
5884 10636 0.873054 CATCGATTGATGCAGAGGCC 59.127 55.000 10.05 0.00 45.06 5.19
5885 10637 0.602106 ATCGATTGATGCAGAGGCCG 60.602 55.000 0.00 0.00 40.13 6.13
5886 10638 2.249535 CGATTGATGCAGAGGCCGG 61.250 63.158 0.00 0.00 40.13 6.13
5887 10639 1.895707 GATTGATGCAGAGGCCGGG 60.896 63.158 2.18 0.00 40.13 5.73
5888 10640 3.426309 ATTGATGCAGAGGCCGGGG 62.426 63.158 2.18 0.00 40.13 5.73
5891 10643 4.815973 ATGCAGAGGCCGGGGGTA 62.816 66.667 2.18 0.00 40.13 3.69
5894 10646 3.155167 CAGAGGCCGGGGGTACTC 61.155 72.222 2.18 0.00 32.07 2.59
5895 10647 4.477119 AGAGGCCGGGGGTACTCC 62.477 72.222 1.90 1.90 32.22 3.85
5896 10648 4.477119 GAGGCCGGGGGTACTCCT 62.477 72.222 12.68 0.00 35.33 3.69
5897 10649 3.997756 GAGGCCGGGGGTACTCCTT 62.998 68.421 12.68 0.00 35.33 3.36
5898 10650 3.477346 GGCCGGGGGTACTCCTTC 61.477 72.222 12.68 0.70 35.33 3.46
5899 10651 2.365237 GCCGGGGGTACTCCTTCT 60.365 66.667 12.68 0.00 35.33 2.85
5900 10652 1.993948 GCCGGGGGTACTCCTTCTT 60.994 63.158 12.68 0.00 35.33 2.52
5901 10653 1.559965 GCCGGGGGTACTCCTTCTTT 61.560 60.000 12.68 0.00 35.33 2.52
5902 10654 0.989602 CCGGGGGTACTCCTTCTTTT 59.010 55.000 12.68 0.00 35.33 2.27
5903 10655 1.065636 CCGGGGGTACTCCTTCTTTTC 60.066 57.143 12.68 0.00 35.33 2.29
5904 10656 1.065636 CGGGGGTACTCCTTCTTTTCC 60.066 57.143 12.68 0.00 35.33 3.13
5905 10657 1.990327 GGGGGTACTCCTTCTTTTCCA 59.010 52.381 12.68 0.00 35.33 3.53
5906 10658 2.377531 GGGGGTACTCCTTCTTTTCCAA 59.622 50.000 12.68 0.00 35.33 3.53
5907 10659 3.181426 GGGGGTACTCCTTCTTTTCCAAA 60.181 47.826 12.68 0.00 35.33 3.28
5908 10660 4.476297 GGGGTACTCCTTCTTTTCCAAAA 58.524 43.478 3.84 0.00 35.33 2.44
5909 10661 4.897076 GGGGTACTCCTTCTTTTCCAAAAA 59.103 41.667 3.84 0.00 35.33 1.94
6235 10987 8.854312 GTTTTTGTTTCTATCTGCTAATTCTGC 58.146 33.333 0.00 0.00 0.00 4.26
6460 11212 3.066481 AGAGCGTTTAGATCGGGAGTAAC 59.934 47.826 0.00 0.00 40.85 2.50
6587 11340 9.033481 CATGTTTATTTTCTTGTGTGTGAACAT 57.967 29.630 0.00 0.00 35.19 2.71
6643 11396 3.658757 TTTTGTTAAGCATGGACCAGC 57.341 42.857 0.00 4.04 0.00 4.85
6712 11465 7.248237 AGGGATATTGGGTAATAATGTTGCAT 58.752 34.615 0.00 0.00 32.80 3.96
7156 11925 2.288518 ACTTCTCGCCTTCTCAAGACAC 60.289 50.000 0.00 0.00 0.00 3.67
7188 11957 3.821033 ACACCACAACTTATTTCAGGCTC 59.179 43.478 0.00 0.00 0.00 4.70
7396 12927 5.005107 AGACGACTGTTTACGAAGAAACAAC 59.995 40.000 13.25 10.32 45.98 3.32
7397 12928 4.626604 ACGACTGTTTACGAAGAAACAACA 59.373 37.500 13.25 0.00 45.98 3.33
7398 12929 5.120519 ACGACTGTTTACGAAGAAACAACAA 59.879 36.000 13.25 0.00 45.98 2.83
7399 12930 5.671140 CGACTGTTTACGAAGAAACAACAAG 59.329 40.000 13.25 6.95 45.98 3.16
7407 12938 5.972935 ACGAAGAAACAACAAGGGAAAAAT 58.027 33.333 0.00 0.00 0.00 1.82
7449 12980 9.492730 AACCAAAATAATTTCATAGATCCCACT 57.507 29.630 0.00 0.00 0.00 4.00
7512 13043 0.941463 CGATGCTGCCTCATACGGAC 60.941 60.000 5.78 0.00 0.00 4.79
8079 13644 3.257561 CAGAAGCGTCGCGGATGG 61.258 66.667 12.30 0.00 0.00 3.51
8108 13673 4.052518 GCATCAGCTGGGGGTGGT 62.053 66.667 15.13 0.00 40.89 4.16
8109 13674 2.044650 CATCAGCTGGGGGTGGTG 60.045 66.667 15.13 0.00 44.02 4.17
8110 13675 2.532715 ATCAGCTGGGGGTGGTGT 60.533 61.111 15.13 0.00 40.89 4.16
8208 13773 2.025887 AGGAAAGGATCTCGTGCCAAAT 60.026 45.455 0.00 0.00 0.00 2.32
8272 13837 4.966787 GGGGCCTGGTCGCACAAA 62.967 66.667 10.82 0.00 32.07 2.83
8298 13863 2.281070 CGTGTGGTGCTGAAGCCT 60.281 61.111 0.00 0.00 41.18 4.58
8302 13867 0.677731 TGTGGTGCTGAAGCCTATGC 60.678 55.000 0.00 0.00 41.18 3.14
8304 13869 1.077501 GGTGCTGAAGCCTATGCCA 60.078 57.895 0.00 0.00 41.18 4.92
8464 14030 0.970640 TTTAGCAGTGTAGGTGCCGA 59.029 50.000 0.00 0.00 42.24 5.54
8498 14064 1.891150 CCAAATCAGCTTGTCAGGCTT 59.109 47.619 6.74 0.00 38.03 4.35
8516 14082 1.558167 TTGGCGGAGAGGGCAATACA 61.558 55.000 0.00 0.00 46.04 2.29
8518 14084 1.523938 GCGGAGAGGGCAATACACC 60.524 63.158 0.00 0.00 0.00 4.16
8519 14085 1.904771 CGGAGAGGGCAATACACCA 59.095 57.895 0.00 0.00 0.00 4.17
8520 14086 0.469917 CGGAGAGGGCAATACACCAT 59.530 55.000 0.00 0.00 0.00 3.55
8550 14116 2.948979 CCAAAGCAACAAGTACTGACCA 59.051 45.455 0.00 0.00 0.00 4.02
8568 14143 1.006825 CAATCTCGTGAACGCCGTGA 61.007 55.000 0.00 0.00 39.60 4.35
8606 14181 3.404773 GGCTTGTAGGCCCTCAGT 58.595 61.111 0.00 0.00 45.92 3.41
8664 14243 2.044946 GCAAGGGGGCAATCTCGT 60.045 61.111 0.00 0.00 0.00 4.18
8682 14261 1.303236 TGAACGGAGTGCCCATTGG 60.303 57.895 0.00 0.00 45.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
432 436 2.790791 CCGAAGCTCTCGCATCCCT 61.791 63.158 11.33 0.00 46.71 4.20
685 714 2.295909 CCATCTCTCGATTCTCCTCACC 59.704 54.545 0.00 0.00 0.00 4.02
788 817 1.451927 CGCCCAGCCATACACACAT 60.452 57.895 0.00 0.00 0.00 3.21
883 3308 3.416156 CACAAGGAAGGAAGGAAGGAAG 58.584 50.000 0.00 0.00 0.00 3.46
884 3309 2.489073 GCACAAGGAAGGAAGGAAGGAA 60.489 50.000 0.00 0.00 0.00 3.36
885 3310 1.073923 GCACAAGGAAGGAAGGAAGGA 59.926 52.381 0.00 0.00 0.00 3.36
886 3311 1.074566 AGCACAAGGAAGGAAGGAAGG 59.925 52.381 0.00 0.00 0.00 3.46
887 3312 2.575805 AGCACAAGGAAGGAAGGAAG 57.424 50.000 0.00 0.00 0.00 3.46
888 3313 2.443255 AGAAGCACAAGGAAGGAAGGAA 59.557 45.455 0.00 0.00 0.00 3.36
889 3314 2.057922 AGAAGCACAAGGAAGGAAGGA 58.942 47.619 0.00 0.00 0.00 3.36
890 3315 2.575805 AGAAGCACAAGGAAGGAAGG 57.424 50.000 0.00 0.00 0.00 3.46
891 3316 3.480470 TGAAGAAGCACAAGGAAGGAAG 58.520 45.455 0.00 0.00 0.00 3.46
892 3317 3.576078 TGAAGAAGCACAAGGAAGGAA 57.424 42.857 0.00 0.00 0.00 3.36
893 3318 3.795688 ATGAAGAAGCACAAGGAAGGA 57.204 42.857 0.00 0.00 0.00 3.36
894 3319 3.822735 TGAATGAAGAAGCACAAGGAAGG 59.177 43.478 0.00 0.00 0.00 3.46
895 3320 4.320788 GGTGAATGAAGAAGCACAAGGAAG 60.321 45.833 0.00 0.00 33.09 3.46
964 3389 1.370900 CCACGCACTTGCTTTGAGC 60.371 57.895 0.00 0.00 42.82 4.26
965 3390 1.165907 TCCCACGCACTTGCTTTGAG 61.166 55.000 0.00 0.00 39.32 3.02
966 3391 0.537143 ATCCCACGCACTTGCTTTGA 60.537 50.000 0.00 0.00 39.32 2.69
967 3392 0.314935 AATCCCACGCACTTGCTTTG 59.685 50.000 0.00 0.00 39.32 2.77
968 3393 0.314935 CAATCCCACGCACTTGCTTT 59.685 50.000 0.00 0.00 39.32 3.51
969 3394 1.526575 CCAATCCCACGCACTTGCTT 61.527 55.000 0.00 0.00 39.32 3.91
970 3395 1.973281 CCAATCCCACGCACTTGCT 60.973 57.895 0.00 0.00 39.32 3.91
971 3396 1.926511 CTCCAATCCCACGCACTTGC 61.927 60.000 0.00 0.00 37.78 4.01
1067 3492 1.539929 GCTCGTTCATGGAGATGGAGG 60.540 57.143 2.03 0.00 33.27 4.30
1119 3549 0.183492 AGCAACCAGTCCTGCAAGAA 59.817 50.000 0.00 0.00 41.17 2.52
1120 3550 0.250467 GAGCAACCAGTCCTGCAAGA 60.250 55.000 0.00 0.00 41.17 3.02
1121 3551 1.239968 GGAGCAACCAGTCCTGCAAG 61.240 60.000 0.00 0.00 41.17 4.01
1122 3552 1.228245 GGAGCAACCAGTCCTGCAA 60.228 57.895 0.00 0.00 41.17 4.08
1123 3553 2.431683 GGAGCAACCAGTCCTGCA 59.568 61.111 0.00 0.00 41.17 4.41
1233 3663 5.515008 GGAGGGTCTAAATTTGTTGAGAGGT 60.515 44.000 0.00 0.00 0.00 3.85
1282 3712 6.424812 CACACACACATAGGGATACATACATG 59.575 42.308 0.00 0.00 34.47 3.21
1283 3713 6.099701 ACACACACACATAGGGATACATACAT 59.900 38.462 0.00 0.00 34.47 2.29
1284 3714 5.423931 ACACACACACATAGGGATACATACA 59.576 40.000 0.00 0.00 34.47 2.29
1285 3715 5.753438 CACACACACACATAGGGATACATAC 59.247 44.000 0.00 0.00 34.47 2.39
1286 3716 5.423931 ACACACACACACATAGGGATACATA 59.576 40.000 0.00 0.00 37.19 2.29
1287 3717 4.225042 ACACACACACACATAGGGATACAT 59.775 41.667 0.00 0.00 39.74 2.29
1288 3718 3.580895 ACACACACACACATAGGGATACA 59.419 43.478 0.00 0.00 39.74 2.29
1289 3719 3.932710 CACACACACACACATAGGGATAC 59.067 47.826 0.00 0.00 0.00 2.24
1290 3720 3.580895 ACACACACACACACATAGGGATA 59.419 43.478 0.00 0.00 0.00 2.59
1291 3721 2.371841 ACACACACACACACATAGGGAT 59.628 45.455 0.00 0.00 0.00 3.85
1292 3722 1.765904 ACACACACACACACATAGGGA 59.234 47.619 0.00 0.00 0.00 4.20
1293 3723 1.872952 CACACACACACACACATAGGG 59.127 52.381 0.00 0.00 0.00 3.53
1294 3724 2.287644 CACACACACACACACACATAGG 59.712 50.000 0.00 0.00 0.00 2.57
1295 3725 2.935849 ACACACACACACACACACATAG 59.064 45.455 0.00 0.00 0.00 2.23
1296 3726 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
1297 3727 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
1298 3728 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1299 3729 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1300 3730 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
1301 3731 1.400888 CCAACACACACACACACACAC 60.401 52.381 0.00 0.00 0.00 3.82
1302 3732 0.877743 CCAACACACACACACACACA 59.122 50.000 0.00 0.00 0.00 3.72
1303 3733 0.878416 ACCAACACACACACACACAC 59.122 50.000 0.00 0.00 0.00 3.82
1304 3734 1.160989 GACCAACACACACACACACA 58.839 50.000 0.00 0.00 0.00 3.72
1305 3735 0.096281 CGACCAACACACACACACAC 59.904 55.000 0.00 0.00 0.00 3.82
1306 3736 1.640210 GCGACCAACACACACACACA 61.640 55.000 0.00 0.00 0.00 3.72
1307 3737 1.061887 GCGACCAACACACACACAC 59.938 57.895 0.00 0.00 0.00 3.82
1308 3738 0.175989 TAGCGACCAACACACACACA 59.824 50.000 0.00 0.00 0.00 3.72
1309 3739 0.859232 CTAGCGACCAACACACACAC 59.141 55.000 0.00 0.00 0.00 3.82
1310 3740 0.878523 GCTAGCGACCAACACACACA 60.879 55.000 0.00 0.00 0.00 3.72
1311 3741 1.566018 GGCTAGCGACCAACACACAC 61.566 60.000 9.00 0.00 0.00 3.82
1312 3742 1.301401 GGCTAGCGACCAACACACA 60.301 57.895 9.00 0.00 0.00 3.72
1313 3743 0.602905 AAGGCTAGCGACCAACACAC 60.603 55.000 9.00 0.00 0.00 3.82
1314 3744 0.602638 CAAGGCTAGCGACCAACACA 60.603 55.000 9.00 0.00 0.00 3.72
1315 3745 1.912371 GCAAGGCTAGCGACCAACAC 61.912 60.000 9.00 0.00 0.00 3.32
1316 3746 1.671054 GCAAGGCTAGCGACCAACA 60.671 57.895 9.00 0.00 0.00 3.33
1317 3747 2.399356 GGCAAGGCTAGCGACCAAC 61.399 63.158 9.00 0.00 0.00 3.77
1375 3806 5.938322 ACGATGAAATGTGCGTATTTTCTT 58.062 33.333 11.22 6.68 34.93 2.52
1471 3903 1.047002 CCTCCCGATCTTGAGCTCAT 58.953 55.000 19.04 1.77 0.00 2.90
1498 3930 1.002868 GCCAGGAGCAGAGCAAGAA 60.003 57.895 0.00 0.00 42.97 2.52
1526 3958 0.605589 CGGAGAAAGGCAGTGAGAGT 59.394 55.000 0.00 0.00 0.00 3.24
1538 3970 4.257654 TTGGCGTGGGCGGAGAAA 62.258 61.111 0.00 0.00 41.24 2.52
1580 4012 0.588252 GCTGAAGCAAGCGTCTTTCA 59.412 50.000 9.26 2.55 41.59 2.69
1610 4042 0.609131 CACGGTTGGCTTCCTGGATT 60.609 55.000 0.00 0.00 0.00 3.01
1702 4134 5.789643 AAAGGCTCTTGTATTTCTTTGCA 57.210 34.783 0.00 0.00 0.00 4.08
1714 4146 4.703379 ATCCCTGATCTAAAGGCTCTTG 57.297 45.455 0.00 0.00 33.07 3.02
2205 5103 2.357034 GAAAGTCCCACGCGCTCA 60.357 61.111 5.73 0.00 0.00 4.26
2504 5506 3.672503 GGGATTGGGGCCACTGGT 61.673 66.667 6.53 0.00 0.00 4.00
2523 5525 3.936203 AAGAACCGGCGGCACTGA 61.936 61.111 28.71 0.00 0.00 3.41
2580 5582 2.102757 CCACTGCAGCATCATCTAGAGT 59.897 50.000 15.27 0.00 0.00 3.24
2887 5889 1.072806 AGATGGCAGAGCACTGTGAAA 59.927 47.619 12.86 0.00 45.04 2.69
3021 6023 3.236003 GACGGGGCTCAAACTCGGT 62.236 63.158 0.00 0.00 0.00 4.69
3058 6060 1.681793 CCGAGATAGGAACACGACCAT 59.318 52.381 0.00 0.00 0.00 3.55
3188 6205 2.204151 CCCCCTGAAGGAGTGGGT 60.204 66.667 0.00 0.00 39.31 4.51
3216 6235 6.268825 ACGTACTCTTCTCAGCATAAAGAA 57.731 37.500 0.00 0.00 0.00 2.52
3259 6278 2.183555 GACCGGGAGCAGTAACCG 59.816 66.667 6.32 0.00 46.79 4.44
3702 8365 2.755650 CCACAAGACGAGCTTTGTAGT 58.244 47.619 1.31 0.00 33.60 2.73
3761 8424 1.364626 GCCACAGGAGCGAATGTCTG 61.365 60.000 0.00 0.00 0.00 3.51
3975 8639 0.322816 GCTCAAACCAGGCATGAGGA 60.323 55.000 19.11 0.00 40.68 3.71
3980 8644 1.589716 GAAGCGCTCAAACCAGGCAT 61.590 55.000 12.06 0.00 0.00 4.40
4035 8699 3.912496 AACAACTCGGGATCATGATCA 57.088 42.857 31.49 14.54 39.54 2.92
4036 8700 3.941483 ACAAACAACTCGGGATCATGATC 59.059 43.478 24.90 24.90 37.11 2.92
4037 8701 3.955471 ACAAACAACTCGGGATCATGAT 58.045 40.909 8.25 8.25 0.00 2.45
4038 8702 3.417069 ACAAACAACTCGGGATCATGA 57.583 42.857 0.00 0.00 0.00 3.07
4039 8703 3.501828 TGAACAAACAACTCGGGATCATG 59.498 43.478 0.00 0.00 0.00 3.07
4040 8704 3.502211 GTGAACAAACAACTCGGGATCAT 59.498 43.478 0.00 0.00 0.00 2.45
4041 8705 2.875933 GTGAACAAACAACTCGGGATCA 59.124 45.455 0.00 0.00 0.00 2.92
4042 8706 2.875933 TGTGAACAAACAACTCGGGATC 59.124 45.455 0.00 0.00 0.00 3.36
4043 8707 2.616842 GTGTGAACAAACAACTCGGGAT 59.383 45.455 0.00 0.00 0.00 3.85
4044 8708 2.011222 GTGTGAACAAACAACTCGGGA 58.989 47.619 0.00 0.00 0.00 5.14
4045 8709 1.267832 CGTGTGAACAAACAACTCGGG 60.268 52.381 0.00 0.00 0.00 5.14
4046 8710 1.395608 ACGTGTGAACAAACAACTCGG 59.604 47.619 0.00 0.00 0.00 4.63
4047 8711 2.347452 AGACGTGTGAACAAACAACTCG 59.653 45.455 0.00 0.00 0.00 4.18
4048 8712 3.242316 GGAGACGTGTGAACAAACAACTC 60.242 47.826 0.00 0.00 0.00 3.01
4049 8713 2.676342 GGAGACGTGTGAACAAACAACT 59.324 45.455 0.00 0.00 0.00 3.16
4050 8714 2.676342 AGGAGACGTGTGAACAAACAAC 59.324 45.455 0.00 0.00 0.00 3.32
4051 8715 2.933906 GAGGAGACGTGTGAACAAACAA 59.066 45.455 0.00 0.00 0.00 2.83
4052 8716 2.546778 GAGGAGACGTGTGAACAAACA 58.453 47.619 0.00 0.00 0.00 2.83
4053 8717 1.521423 CGAGGAGACGTGTGAACAAAC 59.479 52.381 0.00 0.00 0.00 2.93
4054 8718 1.135527 ACGAGGAGACGTGTGAACAAA 59.864 47.619 0.00 0.00 44.84 2.83
4055 8719 0.742505 ACGAGGAGACGTGTGAACAA 59.257 50.000 0.00 0.00 44.84 2.83
4056 8720 2.411535 ACGAGGAGACGTGTGAACA 58.588 52.632 0.00 0.00 44.84 3.18
4064 8728 2.745100 TCCGACCACGAGGAGACG 60.745 66.667 5.68 8.23 42.66 4.18
4065 8729 1.646624 GAGTCCGACCACGAGGAGAC 61.647 65.000 5.68 9.35 42.66 3.36
4066 8730 1.376942 GAGTCCGACCACGAGGAGA 60.377 63.158 5.68 0.00 42.66 3.71
4067 8731 0.961358 AAGAGTCCGACCACGAGGAG 60.961 60.000 5.68 0.00 42.66 3.69
4068 8732 0.959372 GAAGAGTCCGACCACGAGGA 60.959 60.000 5.68 0.00 42.66 3.71
4069 8733 0.961358 AGAAGAGTCCGACCACGAGG 60.961 60.000 0.00 0.00 42.66 4.63
4070 8734 0.448593 GAGAAGAGTCCGACCACGAG 59.551 60.000 0.00 0.00 42.66 4.18
4071 8735 0.959372 GGAGAAGAGTCCGACCACGA 60.959 60.000 0.00 0.00 42.66 4.35
4072 8736 0.961358 AGGAGAAGAGTCCGACCACG 60.961 60.000 0.00 0.00 42.05 4.94
4073 8737 0.812549 GAGGAGAAGAGTCCGACCAC 59.187 60.000 0.00 0.00 42.05 4.16
4074 8738 0.323542 GGAGGAGAAGAGTCCGACCA 60.324 60.000 0.00 0.00 42.05 4.02
4075 8739 0.033894 AGGAGGAGAAGAGTCCGACC 60.034 60.000 0.00 0.00 42.05 4.79
4076 8740 1.064979 AGAGGAGGAGAAGAGTCCGAC 60.065 57.143 0.00 0.00 42.05 4.79
4077 8741 1.291109 AGAGGAGGAGAAGAGTCCGA 58.709 55.000 0.00 0.00 42.05 4.55
4078 8742 3.146066 CATAGAGGAGGAGAAGAGTCCG 58.854 54.545 0.00 0.00 42.05 4.79
4079 8743 4.178956 ACATAGAGGAGGAGAAGAGTCC 57.821 50.000 0.00 0.00 36.79 3.85
4080 8744 5.197451 TCAACATAGAGGAGGAGAAGAGTC 58.803 45.833 0.00 0.00 0.00 3.36
4081 8745 5.199982 TCAACATAGAGGAGGAGAAGAGT 57.800 43.478 0.00 0.00 0.00 3.24
4082 8746 5.832595 TCATCAACATAGAGGAGGAGAAGAG 59.167 44.000 0.00 0.00 0.00 2.85
4083 8747 5.596361 GTCATCAACATAGAGGAGGAGAAGA 59.404 44.000 0.00 0.00 0.00 2.87
4084 8748 5.362143 TGTCATCAACATAGAGGAGGAGAAG 59.638 44.000 0.00 0.00 31.20 2.85
4085 8749 5.272402 TGTCATCAACATAGAGGAGGAGAA 58.728 41.667 0.00 0.00 31.20 2.87
4086 8750 4.871822 TGTCATCAACATAGAGGAGGAGA 58.128 43.478 0.00 0.00 31.20 3.71
4087 8751 5.804944 ATGTCATCAACATAGAGGAGGAG 57.195 43.478 0.00 0.00 46.95 3.69
4098 8762 2.501316 ACTCGGGATCATGTCATCAACA 59.499 45.455 0.00 0.00 43.51 3.33
4099 8763 2.868583 CACTCGGGATCATGTCATCAAC 59.131 50.000 0.00 0.00 0.00 3.18
4100 8764 2.765699 TCACTCGGGATCATGTCATCAA 59.234 45.455 0.00 0.00 0.00 2.57
4101 8765 2.387757 TCACTCGGGATCATGTCATCA 58.612 47.619 0.00 0.00 0.00 3.07
4102 8766 3.006217 TGATCACTCGGGATCATGTCATC 59.994 47.826 7.73 0.00 46.46 2.92
4103 8767 2.967887 TGATCACTCGGGATCATGTCAT 59.032 45.455 7.73 0.00 46.46 3.06
4104 8768 2.387757 TGATCACTCGGGATCATGTCA 58.612 47.619 7.73 0.00 46.46 3.58
4110 8774 2.093764 GGGATCATGATCACTCGGGATC 60.094 54.545 31.49 14.23 43.19 3.36
4111 8775 1.905215 GGGATCATGATCACTCGGGAT 59.095 52.381 31.49 0.00 38.20 3.85
4112 8776 1.342074 GGGATCATGATCACTCGGGA 58.658 55.000 31.49 0.00 38.20 5.14
4113 8777 0.037882 CGGGATCATGATCACTCGGG 60.038 60.000 30.30 14.74 39.06 5.14
4114 8778 0.961753 TCGGGATCATGATCACTCGG 59.038 55.000 30.30 18.02 39.06 4.63
4115 8779 1.611006 ACTCGGGATCATGATCACTCG 59.389 52.381 30.30 27.67 39.06 4.18
4116 8780 3.181471 ACAACTCGGGATCATGATCACTC 60.181 47.826 30.30 19.83 39.06 3.51
4117 8781 2.768527 ACAACTCGGGATCATGATCACT 59.231 45.455 30.30 13.49 39.06 3.41
4118 8782 3.185246 ACAACTCGGGATCATGATCAC 57.815 47.619 31.49 28.64 39.54 3.06
4133 8797 2.676342 GGAGACGTGTGAACAAACAACT 59.324 45.455 0.00 0.00 0.00 3.16
4622 9372 2.265904 GCGGGGAAAGAAAAGGCGT 61.266 57.895 0.00 0.00 0.00 5.68
4787 9537 1.818642 GCAACTCATCCTCTGTGCTT 58.181 50.000 0.00 0.00 0.00 3.91
4798 9548 2.117156 GCCATGGCTCGCAACTCAT 61.117 57.895 29.98 0.00 38.26 2.90
5006 9756 3.433709 CACATAGTGAAGAGCGAGAGTG 58.566 50.000 0.00 0.00 35.23 3.51
5563 10313 4.396166 GGCCAATACATATACAGATGTGGC 59.604 45.833 0.00 7.90 42.00 5.01
5604 10354 4.650734 TGTGTTGGATAATGAGCAACTGA 58.349 39.130 0.00 0.00 0.00 3.41
5605 10355 5.571784 ATGTGTTGGATAATGAGCAACTG 57.428 39.130 0.00 0.00 0.00 3.16
5625 10377 3.128938 GCTACCGTCAGGCTAGGTATATG 59.871 52.174 13.68 6.37 42.76 1.78
5626 10378 3.354467 GCTACCGTCAGGCTAGGTATAT 58.646 50.000 13.68 0.00 42.76 0.86
5627 10379 2.787994 GCTACCGTCAGGCTAGGTATA 58.212 52.381 13.68 0.00 42.76 1.47
5628 10380 1.618487 GCTACCGTCAGGCTAGGTAT 58.382 55.000 13.68 0.00 42.76 2.73
5629 10381 0.816825 CGCTACCGTCAGGCTAGGTA 60.817 60.000 12.95 12.95 42.76 3.08
5630 10382 2.119655 CGCTACCGTCAGGCTAGGT 61.120 63.158 12.17 12.17 42.76 3.08
5631 10383 2.722487 CGCTACCGTCAGGCTAGG 59.278 66.667 0.00 0.00 42.76 3.02
5632 10384 2.026301 GCGCTACCGTCAGGCTAG 59.974 66.667 0.00 0.00 42.76 3.42
5633 10385 3.884350 CGCGCTACCGTCAGGCTA 61.884 66.667 5.56 0.00 42.76 3.93
5637 10389 2.345880 ATAACCCGCGCTACCGTCAG 62.346 60.000 5.56 0.00 36.67 3.51
5638 10390 2.340453 GATAACCCGCGCTACCGTCA 62.340 60.000 5.56 0.00 36.67 4.35
5639 10391 1.659644 GATAACCCGCGCTACCGTC 60.660 63.158 5.56 0.00 36.67 4.79
5640 10392 1.669999 AAGATAACCCGCGCTACCGT 61.670 55.000 5.56 0.00 36.67 4.83
5641 10393 0.938168 GAAGATAACCCGCGCTACCG 60.938 60.000 5.56 0.00 37.57 4.02
5642 10394 0.103572 TGAAGATAACCCGCGCTACC 59.896 55.000 5.56 0.00 0.00 3.18
5643 10395 1.488527 CTGAAGATAACCCGCGCTAC 58.511 55.000 5.56 0.00 0.00 3.58
5644 10396 0.249322 GCTGAAGATAACCCGCGCTA 60.249 55.000 5.56 0.00 0.00 4.26
5645 10397 1.521681 GCTGAAGATAACCCGCGCT 60.522 57.895 5.56 0.00 0.00 5.92
5646 10398 2.534903 GGCTGAAGATAACCCGCGC 61.535 63.158 0.00 0.00 0.00 6.86
5647 10399 2.237751 CGGCTGAAGATAACCCGCG 61.238 63.158 0.00 0.00 31.87 6.46
5648 10400 0.249911 ATCGGCTGAAGATAACCCGC 60.250 55.000 0.00 0.00 38.85 6.13
5649 10401 2.240493 AATCGGCTGAAGATAACCCG 57.760 50.000 0.00 0.00 40.25 5.28
5650 10402 2.618709 CCAAATCGGCTGAAGATAACCC 59.381 50.000 0.00 0.00 0.00 4.11
5651 10403 2.618709 CCCAAATCGGCTGAAGATAACC 59.381 50.000 0.00 0.00 0.00 2.85
5652 10404 3.065371 CACCCAAATCGGCTGAAGATAAC 59.935 47.826 0.00 0.00 0.00 1.89
5653 10405 3.278574 CACCCAAATCGGCTGAAGATAA 58.721 45.455 0.00 0.00 0.00 1.75
5654 10406 2.421388 CCACCCAAATCGGCTGAAGATA 60.421 50.000 0.00 0.00 0.00 1.98
5655 10407 1.683011 CCACCCAAATCGGCTGAAGAT 60.683 52.381 0.00 0.00 0.00 2.40
5656 10408 0.322456 CCACCCAAATCGGCTGAAGA 60.322 55.000 0.00 0.00 0.00 2.87
5657 10409 1.937546 GCCACCCAAATCGGCTGAAG 61.938 60.000 0.00 0.00 42.78 3.02
5658 10410 1.976474 GCCACCCAAATCGGCTGAA 60.976 57.895 0.00 0.00 42.78 3.02
5659 10411 2.361104 GCCACCCAAATCGGCTGA 60.361 61.111 0.00 0.00 42.78 4.26
5660 10412 3.814268 CGCCACCCAAATCGGCTG 61.814 66.667 0.00 0.00 43.95 4.85
5661 10413 3.976701 CTCGCCACCCAAATCGGCT 62.977 63.158 0.00 0.00 43.95 5.52
5662 10414 3.508840 CTCGCCACCCAAATCGGC 61.509 66.667 0.00 0.00 42.64 5.54
5663 10415 2.587322 TAGCTCGCCACCCAAATCGG 62.587 60.000 0.00 0.00 0.00 4.18
5664 10416 0.742990 TTAGCTCGCCACCCAAATCG 60.743 55.000 0.00 0.00 0.00 3.34
5665 10417 1.680338 ATTAGCTCGCCACCCAAATC 58.320 50.000 0.00 0.00 0.00 2.17
5666 10418 3.290948 TTATTAGCTCGCCACCCAAAT 57.709 42.857 0.00 0.00 0.00 2.32
5667 10419 2.791347 TTATTAGCTCGCCACCCAAA 57.209 45.000 0.00 0.00 0.00 3.28
5668 10420 3.244422 CCTATTATTAGCTCGCCACCCAA 60.244 47.826 0.00 0.00 0.00 4.12
5669 10421 2.301870 CCTATTATTAGCTCGCCACCCA 59.698 50.000 0.00 0.00 0.00 4.51
5670 10422 2.935676 GCCTATTATTAGCTCGCCACCC 60.936 54.545 0.00 0.00 0.00 4.61
5671 10423 2.028020 AGCCTATTATTAGCTCGCCACC 60.028 50.000 0.00 0.00 0.00 4.61
5672 10424 3.320673 AGCCTATTATTAGCTCGCCAC 57.679 47.619 0.00 0.00 0.00 5.01
5673 10425 4.527038 ACTTAGCCTATTATTAGCTCGCCA 59.473 41.667 0.00 0.00 0.00 5.69
5674 10426 4.865365 CACTTAGCCTATTATTAGCTCGCC 59.135 45.833 0.00 0.00 0.00 5.54
5675 10427 5.346281 CACACTTAGCCTATTATTAGCTCGC 59.654 44.000 0.00 0.00 0.00 5.03
5676 10428 6.448006 ACACACTTAGCCTATTATTAGCTCG 58.552 40.000 0.00 0.00 0.00 5.03
5677 10429 8.030106 CCTACACACTTAGCCTATTATTAGCTC 58.970 40.741 0.00 0.00 0.00 4.09
5678 10430 7.525692 GCCTACACACTTAGCCTATTATTAGCT 60.526 40.741 0.00 0.00 0.00 3.32
5679 10431 6.590677 GCCTACACACTTAGCCTATTATTAGC 59.409 42.308 0.00 0.00 0.00 3.09
5680 10432 7.667557 TGCCTACACACTTAGCCTATTATTAG 58.332 38.462 0.00 0.00 0.00 1.73
5681 10433 7.606135 TGCCTACACACTTAGCCTATTATTA 57.394 36.000 0.00 0.00 0.00 0.98
5682 10434 6.494666 TGCCTACACACTTAGCCTATTATT 57.505 37.500 0.00 0.00 0.00 1.40
5683 10435 6.572509 CGATGCCTACACACTTAGCCTATTAT 60.573 42.308 0.00 0.00 0.00 1.28
5684 10436 5.278808 CGATGCCTACACACTTAGCCTATTA 60.279 44.000 0.00 0.00 0.00 0.98
5685 10437 4.501571 CGATGCCTACACACTTAGCCTATT 60.502 45.833 0.00 0.00 0.00 1.73
5686 10438 3.005897 CGATGCCTACACACTTAGCCTAT 59.994 47.826 0.00 0.00 0.00 2.57
5687 10439 2.361119 CGATGCCTACACACTTAGCCTA 59.639 50.000 0.00 0.00 0.00 3.93
5688 10440 1.137086 CGATGCCTACACACTTAGCCT 59.863 52.381 0.00 0.00 0.00 4.58
5689 10441 1.134788 ACGATGCCTACACACTTAGCC 60.135 52.381 0.00 0.00 0.00 3.93
5690 10442 2.295253 ACGATGCCTACACACTTAGC 57.705 50.000 0.00 0.00 0.00 3.09
5691 10443 3.066900 AGCTACGATGCCTACACACTTAG 59.933 47.826 0.00 0.00 0.00 2.18
5692 10444 3.021695 AGCTACGATGCCTACACACTTA 58.978 45.455 0.00 0.00 0.00 2.24
5693 10445 1.825474 AGCTACGATGCCTACACACTT 59.175 47.619 0.00 0.00 0.00 3.16
5694 10446 1.475403 AGCTACGATGCCTACACACT 58.525 50.000 0.00 0.00 0.00 3.55
5695 10447 2.295253 AAGCTACGATGCCTACACAC 57.705 50.000 0.00 0.00 0.00 3.82
5696 10448 4.665833 AATAAGCTACGATGCCTACACA 57.334 40.909 0.00 0.00 0.00 3.72
5697 10449 5.986004 AAAATAAGCTACGATGCCTACAC 57.014 39.130 0.00 0.00 0.00 2.90
5698 10450 9.938280 ATATAAAAATAAGCTACGATGCCTACA 57.062 29.630 0.00 0.00 0.00 2.74
5701 10453 8.237267 GCAATATAAAAATAAGCTACGATGCCT 58.763 33.333 0.00 0.00 0.00 4.75
5702 10454 7.484959 GGCAATATAAAAATAAGCTACGATGCC 59.515 37.037 0.00 0.00 39.21 4.40
5703 10455 7.216317 CGGCAATATAAAAATAAGCTACGATGC 59.784 37.037 0.00 0.00 0.00 3.91
5704 10456 7.692291 CCGGCAATATAAAAATAAGCTACGATG 59.308 37.037 0.00 0.00 0.00 3.84
5705 10457 7.604927 TCCGGCAATATAAAAATAAGCTACGAT 59.395 33.333 0.00 0.00 0.00 3.73
5706 10458 6.930164 TCCGGCAATATAAAAATAAGCTACGA 59.070 34.615 0.00 0.00 0.00 3.43
5707 10459 7.124347 TCCGGCAATATAAAAATAAGCTACG 57.876 36.000 0.00 0.00 0.00 3.51
5708 10460 8.512138 ACATCCGGCAATATAAAAATAAGCTAC 58.488 33.333 0.00 0.00 0.00 3.58
5709 10461 8.511321 CACATCCGGCAATATAAAAATAAGCTA 58.489 33.333 0.00 0.00 0.00 3.32
5710 10462 7.370383 CACATCCGGCAATATAAAAATAAGCT 58.630 34.615 0.00 0.00 0.00 3.74
5711 10463 6.586082 CCACATCCGGCAATATAAAAATAAGC 59.414 38.462 0.00 0.00 0.00 3.09
5727 10479 0.958091 TGAAAAAGTGCCACATCCGG 59.042 50.000 0.00 0.00 0.00 5.14
5728 10480 1.608590 ACTGAAAAAGTGCCACATCCG 59.391 47.619 0.00 0.00 37.88 4.18
5729 10481 2.887152 AGACTGAAAAAGTGCCACATCC 59.113 45.455 0.00 0.00 40.07 3.51
5730 10482 4.574599 AAGACTGAAAAAGTGCCACATC 57.425 40.909 0.00 0.00 40.07 3.06
5731 10483 7.611467 TGATATAAGACTGAAAAAGTGCCACAT 59.389 33.333 0.00 0.00 40.07 3.21
5732 10484 6.939730 TGATATAAGACTGAAAAAGTGCCACA 59.060 34.615 0.00 0.00 40.07 4.17
5733 10485 7.244192 GTGATATAAGACTGAAAAAGTGCCAC 58.756 38.462 0.00 0.00 40.07 5.01
5734 10486 6.374333 GGTGATATAAGACTGAAAAAGTGCCA 59.626 38.462 0.00 0.00 40.07 4.92
5735 10487 6.374333 TGGTGATATAAGACTGAAAAAGTGCC 59.626 38.462 0.00 0.00 40.07 5.01
5736 10488 7.377766 TGGTGATATAAGACTGAAAAAGTGC 57.622 36.000 0.00 0.00 40.07 4.40
5737 10489 7.607991 ACCTGGTGATATAAGACTGAAAAAGTG 59.392 37.037 0.00 0.00 40.07 3.16
5738 10490 7.607991 CACCTGGTGATATAAGACTGAAAAAGT 59.392 37.037 22.33 0.00 37.53 2.66
5739 10491 7.607991 ACACCTGGTGATATAAGACTGAAAAAG 59.392 37.037 32.30 0.00 36.96 2.27
5740 10492 7.458397 ACACCTGGTGATATAAGACTGAAAAA 58.542 34.615 32.30 0.00 36.96 1.94
5741 10493 7.016153 ACACCTGGTGATATAAGACTGAAAA 57.984 36.000 32.30 0.00 36.96 2.29
5742 10494 6.620877 ACACCTGGTGATATAAGACTGAAA 57.379 37.500 32.30 0.00 36.96 2.69
5750 10502 5.263593 AAGCGCCACACCTGGTGATATAA 62.264 47.826 32.30 0.00 46.24 0.98
5751 10503 3.807458 AAGCGCCACACCTGGTGATATA 61.807 50.000 32.30 0.00 46.24 0.86
5752 10504 3.133353 AAGCGCCACACCTGGTGATAT 62.133 52.381 32.30 8.29 46.24 1.63
5753 10505 1.836999 AAGCGCCACACCTGGTGATA 61.837 55.000 32.30 0.00 46.24 2.15
5757 10509 2.594592 GAAAGCGCCACACCTGGT 60.595 61.111 2.29 0.00 40.17 4.00
5758 10510 3.365265 GGAAAGCGCCACACCTGG 61.365 66.667 2.29 0.00 41.13 4.45
5759 10511 2.594303 TGGAAAGCGCCACACCTG 60.594 61.111 2.29 0.00 31.66 4.00
5760 10512 2.281761 CTGGAAAGCGCCACACCT 60.282 61.111 2.29 0.00 33.52 4.00
5761 10513 1.734388 AAACTGGAAAGCGCCACACC 61.734 55.000 2.29 3.41 33.52 4.16
5762 10514 0.102300 AAAACTGGAAAGCGCCACAC 59.898 50.000 2.29 0.00 33.52 3.82
5763 10515 1.681538 TAAAACTGGAAAGCGCCACA 58.318 45.000 2.29 0.00 33.52 4.17
5764 10516 3.297830 AATAAAACTGGAAAGCGCCAC 57.702 42.857 2.29 0.00 33.52 5.01
5765 10517 4.521256 AGTAAATAAAACTGGAAAGCGCCA 59.479 37.500 2.29 0.00 36.30 5.69
5766 10518 5.055642 AGTAAATAAAACTGGAAAGCGCC 57.944 39.130 2.29 0.00 0.00 6.53
5767 10519 6.183359 CGAAAGTAAATAAAACTGGAAAGCGC 60.183 38.462 0.00 0.00 0.00 5.92
5768 10520 7.059147 GTCGAAAGTAAATAAAACTGGAAAGCG 59.941 37.037 0.00 0.00 0.00 4.68
5769 10521 8.074370 AGTCGAAAGTAAATAAAACTGGAAAGC 58.926 33.333 0.00 0.00 0.00 3.51
5772 10524 9.768662 AGTAGTCGAAAGTAAATAAAACTGGAA 57.231 29.630 0.00 0.00 0.00 3.53
5773 10525 9.199982 CAGTAGTCGAAAGTAAATAAAACTGGA 57.800 33.333 0.00 0.00 0.00 3.86
5774 10526 7.955864 GCAGTAGTCGAAAGTAAATAAAACTGG 59.044 37.037 0.00 0.00 32.21 4.00
5775 10527 8.709646 AGCAGTAGTCGAAAGTAAATAAAACTG 58.290 33.333 0.00 0.00 34.14 3.16
5776 10528 8.828688 AGCAGTAGTCGAAAGTAAATAAAACT 57.171 30.769 0.00 0.00 0.00 2.66
5777 10529 8.706035 TGAGCAGTAGTCGAAAGTAAATAAAAC 58.294 33.333 0.00 0.00 0.00 2.43
5778 10530 8.706035 GTGAGCAGTAGTCGAAAGTAAATAAAA 58.294 33.333 0.00 0.00 0.00 1.52
5779 10531 8.086522 AGTGAGCAGTAGTCGAAAGTAAATAAA 58.913 33.333 0.00 0.00 0.00 1.40
5780 10532 7.600065 AGTGAGCAGTAGTCGAAAGTAAATAA 58.400 34.615 0.00 0.00 0.00 1.40
5781 10533 7.154435 AGTGAGCAGTAGTCGAAAGTAAATA 57.846 36.000 0.00 0.00 0.00 1.40
5782 10534 6.026947 AGTGAGCAGTAGTCGAAAGTAAAT 57.973 37.500 0.00 0.00 0.00 1.40
5783 10535 5.449107 AGTGAGCAGTAGTCGAAAGTAAA 57.551 39.130 0.00 0.00 0.00 2.01
5784 10536 6.373495 TCATAGTGAGCAGTAGTCGAAAGTAA 59.627 38.462 0.00 0.00 0.00 2.24
5785 10537 5.878669 TCATAGTGAGCAGTAGTCGAAAGTA 59.121 40.000 0.00 0.00 0.00 2.24
5786 10538 4.700692 TCATAGTGAGCAGTAGTCGAAAGT 59.299 41.667 0.00 0.00 0.00 2.66
5787 10539 5.236655 TCATAGTGAGCAGTAGTCGAAAG 57.763 43.478 0.00 0.00 0.00 2.62
5788 10540 5.236655 CTCATAGTGAGCAGTAGTCGAAA 57.763 43.478 0.00 0.00 37.72 3.46
5789 10541 4.884458 CTCATAGTGAGCAGTAGTCGAA 57.116 45.455 0.00 0.00 37.72 3.71
5800 10552 4.125703 GGTCCAAAGATGCTCATAGTGAG 58.874 47.826 2.65 2.65 46.90 3.51
5801 10553 3.776969 AGGTCCAAAGATGCTCATAGTGA 59.223 43.478 0.00 0.00 0.00 3.41
5802 10554 4.148128 AGGTCCAAAGATGCTCATAGTG 57.852 45.455 0.00 0.00 0.00 2.74
5803 10555 4.851639 AAGGTCCAAAGATGCTCATAGT 57.148 40.909 0.00 0.00 0.00 2.12
5804 10556 6.426328 GTCATAAGGTCCAAAGATGCTCATAG 59.574 42.308 0.00 0.00 0.00 2.23
5805 10557 6.291377 GTCATAAGGTCCAAAGATGCTCATA 58.709 40.000 0.00 0.00 0.00 2.15
5806 10558 5.128919 GTCATAAGGTCCAAAGATGCTCAT 58.871 41.667 0.00 0.00 0.00 2.90
5807 10559 4.517285 GTCATAAGGTCCAAAGATGCTCA 58.483 43.478 0.00 0.00 0.00 4.26
5808 10560 3.879892 GGTCATAAGGTCCAAAGATGCTC 59.120 47.826 0.00 0.00 0.00 4.26
5809 10561 3.525199 AGGTCATAAGGTCCAAAGATGCT 59.475 43.478 0.00 0.00 0.00 3.79
5810 10562 3.891049 AGGTCATAAGGTCCAAAGATGC 58.109 45.455 0.00 0.00 0.00 3.91
5811 10563 9.057089 GTAATAAGGTCATAAGGTCCAAAGATG 57.943 37.037 0.00 0.00 0.00 2.90
5812 10564 7.931948 CGTAATAAGGTCATAAGGTCCAAAGAT 59.068 37.037 0.00 0.00 0.00 2.40
5813 10565 7.093201 ACGTAATAAGGTCATAAGGTCCAAAGA 60.093 37.037 0.00 0.00 0.00 2.52
5814 10566 7.046033 ACGTAATAAGGTCATAAGGTCCAAAG 58.954 38.462 0.00 0.00 0.00 2.77
5815 10567 6.949715 ACGTAATAAGGTCATAAGGTCCAAA 58.050 36.000 0.00 0.00 0.00 3.28
5816 10568 6.549433 ACGTAATAAGGTCATAAGGTCCAA 57.451 37.500 0.00 0.00 0.00 3.53
5817 10569 6.549433 AACGTAATAAGGTCATAAGGTCCA 57.451 37.500 0.00 0.00 0.00 4.02
5818 10570 7.854557 AAAACGTAATAAGGTCATAAGGTCC 57.145 36.000 0.00 0.00 0.00 4.46
5840 10592 9.993454 TGCATGCAGCCATATTATTAAATAAAA 57.007 25.926 18.46 0.00 44.83 1.52
5842 10594 9.806203 GATGCATGCAGCCATATTATTAAATAA 57.194 29.630 25.21 0.00 44.83 1.40
5843 10595 8.130469 CGATGCATGCAGCCATATTATTAAATA 58.870 33.333 28.76 0.00 44.83 1.40
5844 10596 6.976349 CGATGCATGCAGCCATATTATTAAAT 59.024 34.615 28.76 4.60 44.83 1.40
5845 10597 6.150809 TCGATGCATGCAGCCATATTATTAAA 59.849 34.615 28.76 0.00 44.83 1.52
5846 10598 5.647225 TCGATGCATGCAGCCATATTATTAA 59.353 36.000 28.76 0.00 44.83 1.40
5847 10599 5.184711 TCGATGCATGCAGCCATATTATTA 58.815 37.500 28.76 0.00 44.83 0.98
5848 10600 4.011698 TCGATGCATGCAGCCATATTATT 58.988 39.130 28.76 6.59 44.83 1.40
5849 10601 3.613030 TCGATGCATGCAGCCATATTAT 58.387 40.909 28.76 7.39 44.83 1.28
5850 10602 3.056588 TCGATGCATGCAGCCATATTA 57.943 42.857 28.76 6.06 44.83 0.98
5851 10603 1.900245 TCGATGCATGCAGCCATATT 58.100 45.000 28.76 9.02 44.83 1.28
5852 10604 2.124277 ATCGATGCATGCAGCCATAT 57.876 45.000 28.76 17.14 44.83 1.78
5853 10605 1.538075 CAATCGATGCATGCAGCCATA 59.462 47.619 28.76 15.64 44.83 2.74
5854 10606 0.313987 CAATCGATGCATGCAGCCAT 59.686 50.000 28.76 20.10 44.83 4.40
5855 10607 0.748729 TCAATCGATGCATGCAGCCA 60.749 50.000 28.76 18.55 44.83 4.75
5856 10608 0.596577 ATCAATCGATGCATGCAGCC 59.403 50.000 28.76 19.54 44.83 4.85
5857 10609 1.686464 CATCAATCGATGCATGCAGC 58.314 50.000 25.69 25.69 42.54 5.25
5866 10618 0.602106 CGGCCTCTGCATCAATCGAT 60.602 55.000 0.00 0.00 40.13 3.59
5867 10619 1.227350 CGGCCTCTGCATCAATCGA 60.227 57.895 0.00 0.00 40.13 3.59
5868 10620 2.249535 CCGGCCTCTGCATCAATCG 61.250 63.158 0.00 0.00 40.13 3.34
5869 10621 1.895707 CCCGGCCTCTGCATCAATC 60.896 63.158 0.00 0.00 40.13 2.67
5870 10622 2.194056 CCCGGCCTCTGCATCAAT 59.806 61.111 0.00 0.00 40.13 2.57
5871 10623 4.113815 CCCCGGCCTCTGCATCAA 62.114 66.667 0.00 0.00 40.13 2.57
5874 10626 4.815973 TACCCCCGGCCTCTGCAT 62.816 66.667 0.00 0.00 40.13 3.96
5877 10629 3.155167 GAGTACCCCCGGCCTCTG 61.155 72.222 0.00 0.00 0.00 3.35
5878 10630 4.477119 GGAGTACCCCCGGCCTCT 62.477 72.222 0.00 0.00 0.00 3.69
5879 10631 3.997756 AAGGAGTACCCCCGGCCTC 62.998 68.421 0.00 0.00 36.73 4.70
5880 10632 3.997756 GAAGGAGTACCCCCGGCCT 62.998 68.421 0.00 0.00 36.73 5.19
5881 10633 3.477346 GAAGGAGTACCCCCGGCC 61.477 72.222 0.00 0.00 36.73 6.13
5882 10634 1.559965 AAAGAAGGAGTACCCCCGGC 61.560 60.000 0.00 0.00 36.73 6.13
5883 10635 0.989602 AAAAGAAGGAGTACCCCCGG 59.010 55.000 0.00 0.00 36.73 5.73
5884 10636 1.065636 GGAAAAGAAGGAGTACCCCCG 60.066 57.143 0.00 0.00 36.73 5.73
5885 10637 1.990327 TGGAAAAGAAGGAGTACCCCC 59.010 52.381 0.00 0.00 36.73 5.40
5886 10638 3.801307 TTGGAAAAGAAGGAGTACCCC 57.199 47.619 0.00 0.00 36.73 4.95
5907 10659 4.580580 GCAGGCTAGGTATATGCACTTTTT 59.419 41.667 0.00 0.00 36.88 1.94
5908 10660 4.137543 GCAGGCTAGGTATATGCACTTTT 58.862 43.478 0.00 0.00 36.88 2.27
5909 10661 3.496870 GGCAGGCTAGGTATATGCACTTT 60.497 47.826 0.00 0.00 38.63 2.66
5910 10662 2.039084 GGCAGGCTAGGTATATGCACTT 59.961 50.000 0.00 0.00 38.63 3.16
5911 10663 1.625818 GGCAGGCTAGGTATATGCACT 59.374 52.381 0.00 0.00 38.63 4.40
5912 10664 1.625818 AGGCAGGCTAGGTATATGCAC 59.374 52.381 0.00 0.00 38.63 4.57
5913 10665 1.902508 GAGGCAGGCTAGGTATATGCA 59.097 52.381 0.00 0.00 38.63 3.96
5914 10666 1.902508 TGAGGCAGGCTAGGTATATGC 59.097 52.381 0.00 0.00 36.16 3.14
5915 10667 3.580458 AGTTGAGGCAGGCTAGGTATATG 59.420 47.826 0.00 0.00 0.00 1.78
5916 10668 3.580458 CAGTTGAGGCAGGCTAGGTATAT 59.420 47.826 0.00 0.00 0.00 0.86
5917 10669 2.965831 CAGTTGAGGCAGGCTAGGTATA 59.034 50.000 0.00 0.00 0.00 1.47
5918 10670 1.765314 CAGTTGAGGCAGGCTAGGTAT 59.235 52.381 0.00 0.00 0.00 2.73
5919 10671 1.195115 CAGTTGAGGCAGGCTAGGTA 58.805 55.000 0.00 0.00 0.00 3.08
6225 10977 1.334869 CATCCGGGTTGCAGAATTAGC 59.665 52.381 0.00 0.00 0.00 3.09
6235 10987 8.504005 GTGATATTTAATTAGTCATCCGGGTTG 58.496 37.037 0.00 0.00 0.00 3.77
6569 11322 6.364706 GTGAAACATGTTCACACACAAGAAAA 59.635 34.615 28.11 3.81 45.89 2.29
6587 11340 6.018588 ACGAGATTGACAAATTACGTGAAACA 60.019 34.615 0.00 0.00 36.89 2.83
7188 11957 4.082895 CCTCTTCAAAACCTGCATCAAGAG 60.083 45.833 0.00 0.00 36.62 2.85
7512 13043 6.876257 GGTACTCTATTCTTATGCCAAGGATG 59.124 42.308 0.00 0.00 0.00 3.51
7801 13332 2.075355 ATGGGTCCCCTGCGTTTTCA 62.075 55.000 5.13 0.00 36.94 2.69
7830 13361 5.444663 ACAAACTCTCTCTTTTCAATGGC 57.555 39.130 0.00 0.00 0.00 4.40
8079 13644 2.751436 TGATGCGCAAGGGGCTTC 60.751 61.111 17.11 5.99 42.73 3.86
8105 13670 1.152984 CCAGGCAAGACACACACCA 60.153 57.895 0.00 0.00 0.00 4.17
8106 13671 2.555547 GCCAGGCAAGACACACACC 61.556 63.158 6.55 0.00 0.00 4.16
8107 13672 2.896801 CGCCAGGCAAGACACACAC 61.897 63.158 13.30 0.00 0.00 3.82
8108 13673 2.591429 CGCCAGGCAAGACACACA 60.591 61.111 13.30 0.00 0.00 3.72
8109 13674 2.186826 AACGCCAGGCAAGACACAC 61.187 57.895 13.30 0.00 0.00 3.82
8110 13675 2.186160 CAACGCCAGGCAAGACACA 61.186 57.895 13.30 0.00 0.00 3.72
8272 13837 4.602259 CACCACACGGCGTGTCCT 62.602 66.667 39.67 25.28 43.92 3.85
8372 13938 2.437359 CTTGGAAGAGCTGGGCGG 60.437 66.667 0.00 0.00 0.00 6.13
8464 14030 2.711009 TGATTTGGAAGTGGACTGAGGT 59.289 45.455 0.00 0.00 0.00 3.85
8498 14064 1.992834 TGTATTGCCCTCTCCGCCA 60.993 57.895 0.00 0.00 0.00 5.69
8516 14082 1.985159 TGCTTTGGTGACTCCTATGGT 59.015 47.619 0.00 0.00 37.07 3.55
8518 14084 3.411446 TGTTGCTTTGGTGACTCCTATG 58.589 45.455 0.00 0.00 37.07 2.23
8519 14085 3.788227 TGTTGCTTTGGTGACTCCTAT 57.212 42.857 0.00 0.00 37.07 2.57
8520 14086 3.118038 ACTTGTTGCTTTGGTGACTCCTA 60.118 43.478 0.00 0.00 37.07 2.94
8550 14116 0.319211 TTCACGGCGTTCACGAGATT 60.319 50.000 11.19 0.00 43.02 2.40
8568 14143 2.034879 CCTCTGCGTGCGGAACATT 61.035 57.895 4.73 0.00 0.00 2.71
8580 14155 1.078143 CCTACAAGCCCACCTCTGC 60.078 63.158 0.00 0.00 0.00 4.26
8606 14181 1.343465 GAAGGAAGAACAGGACGGTCA 59.657 52.381 10.76 0.00 0.00 4.02
8664 14243 1.303236 CCAATGGGCACTCCGTTCA 60.303 57.895 0.00 0.00 42.63 3.18
8673 14252 4.358841 CCGGTGGACCAATGGGCA 62.359 66.667 7.73 0.00 37.90 5.36
8682 14261 0.179012 TTTTGGGAAGACCGGTGGAC 60.179 55.000 14.63 0.00 44.64 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.