Multiple sequence alignment - TraesCS2A01G225200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G225200 chr2A 100.000 6143 0 0 1 6143 228852944 228859086 0.000000e+00 11345.0
1 TraesCS2A01G225200 chr2A 99.075 973 9 0 3290 4262 740038141 740039113 0.000000e+00 1748.0
2 TraesCS2A01G225200 chr2A 90.557 413 38 1 5577 5988 657446074 657446486 4.190000e-151 545.0
3 TraesCS2A01G225200 chr2B 94.180 1615 66 10 716 2322 379784977 379786571 0.000000e+00 2436.0
4 TraesCS2A01G225200 chr2B 91.581 1354 52 28 4262 5576 379787671 379789001 0.000000e+00 1812.0
5 TraesCS2A01G225200 chr2B 95.256 801 32 2 2489 3289 379786885 379787679 0.000000e+00 1264.0
6 TraesCS2A01G225200 chr2B 93.890 491 29 1 3289 3778 775582915 775582425 0.000000e+00 739.0
7 TraesCS2A01G225200 chr2B 90.909 506 39 6 3761 4262 775582489 775581987 0.000000e+00 673.0
8 TraesCS2A01G225200 chr2B 84.726 419 51 8 30 446 379776035 379776442 2.060000e-109 407.0
9 TraesCS2A01G225200 chr2D 92.627 1709 54 24 645 2322 202435641 202437308 0.000000e+00 2392.0
10 TraesCS2A01G225200 chr2D 94.647 934 27 4 4263 5177 202438389 202439318 0.000000e+00 1426.0
11 TraesCS2A01G225200 chr2D 95.771 804 31 2 2489 3289 202437593 202438396 0.000000e+00 1293.0
12 TraesCS2A01G225200 chr2D 96.774 527 17 0 3289 3815 102566853 102566327 0.000000e+00 880.0
13 TraesCS2A01G225200 chr2D 94.107 560 23 3 3713 4264 102566337 102565780 0.000000e+00 843.0
14 TraesCS2A01G225200 chr2D 84.281 598 63 14 5577 6143 69500245 69499648 6.960000e-154 555.0
15 TraesCS2A01G225200 chr2D 90.511 411 38 1 5577 5986 614652008 614652418 5.420000e-150 542.0
16 TraesCS2A01G225200 chr2D 90.315 413 39 1 5577 5988 388514543 388514131 1.950000e-149 540.0
17 TraesCS2A01G225200 chr2D 93.388 363 18 2 2 364 202434455 202434811 3.260000e-147 532.0
18 TraesCS2A01G225200 chr2D 88.215 297 27 5 5287 5576 587269303 587269598 1.270000e-91 348.0
19 TraesCS2A01G225200 chr2D 86.195 297 33 5 5287 5576 614651763 614652058 1.290000e-81 315.0
20 TraesCS2A01G225200 chr2D 84.899 298 36 5 5287 5576 485647300 485647004 6.020000e-75 292.0
21 TraesCS2A01G225200 chr2D 84.797 296 36 5 5287 5574 485604080 485603786 7.790000e-74 289.0
22 TraesCS2A01G225200 chr2D 94.839 155 8 0 5989 6143 587783911 587783757 6.150000e-60 243.0
23 TraesCS2A01G225200 chr2D 97.115 104 3 0 561 664 202434843 202434946 6.330000e-40 176.0
24 TraesCS2A01G225200 chr2D 87.050 139 17 1 424 562 619268207 619268070 8.240000e-34 156.0
25 TraesCS2A01G225200 chr2D 93.617 47 2 1 400 445 202434807 202434853 1.100000e-07 69.4
26 TraesCS2A01G225200 chr7A 93.731 973 59 2 3290 4262 14289043 14290013 0.000000e+00 1458.0
27 TraesCS2A01G225200 chr6D 96.276 537 19 1 3289 3825 430012660 430013195 0.000000e+00 880.0
28 TraesCS2A01G225200 chr6D 96.578 526 17 1 3290 3815 408894038 408894562 0.000000e+00 870.0
29 TraesCS2A01G225200 chr6D 93.918 559 24 3 3713 4263 408894552 408895108 0.000000e+00 835.0
30 TraesCS2A01G225200 chr6D 93.011 558 31 2 3713 4262 430013130 430013687 0.000000e+00 808.0
31 TraesCS2A01G225200 chr6D 89.831 413 41 1 5577 5988 59741133 59741545 4.220000e-146 529.0
32 TraesCS2A01G225200 chr6D 95.570 158 7 0 5986 6143 93632151 93631994 2.840000e-63 254.0
33 TraesCS2A01G225200 chr6D 94.304 158 9 0 5986 6143 362237613 362237456 6.150000e-60 243.0
34 TraesCS2A01G225200 chr6D 89.764 127 13 0 436 562 271601220 271601094 4.930000e-36 163.0
35 TraesCS2A01G225200 chr6D 89.062 128 14 0 436 563 161074636 161074509 6.370000e-35 159.0
36 TraesCS2A01G225200 chr6D 88.462 130 15 0 433 562 160470643 160470772 2.290000e-34 158.0
37 TraesCS2A01G225200 chr6D 88.281 128 15 0 436 563 25090782 25090655 2.970000e-33 154.0
38 TraesCS2A01G225200 chr6D 85.034 147 20 2 416 562 176737355 176737499 1.380000e-31 148.0
39 TraesCS2A01G225200 chr3D 96.571 525 17 1 3291 3815 597411754 597411231 0.000000e+00 869.0
40 TraesCS2A01G225200 chr3D 94.265 558 22 3 3713 4262 597411241 597410686 0.000000e+00 845.0
41 TraesCS2A01G225200 chr3D 85.762 597 51 16 5577 6143 340907589 340908181 8.810000e-168 601.0
42 TraesCS2A01G225200 chr3D 81.633 294 35 6 5287 5572 505054921 505055203 6.200000e-55 226.0
43 TraesCS2A01G225200 chr3D 88.235 136 15 1 435 570 343453309 343453443 1.770000e-35 161.0
44 TraesCS2A01G225200 chr1D 86.242 596 53 16 5577 6143 479223474 479222879 2.430000e-173 619.0
45 TraesCS2A01G225200 chr1D 89.600 125 13 0 432 556 466072221 466072345 6.370000e-35 159.0
46 TraesCS2A01G225200 chr1D 88.060 134 14 2 431 563 36777256 36777388 2.290000e-34 158.0
47 TraesCS2A01G225200 chr1D 88.976 127 14 0 436 562 194139771 194139897 2.290000e-34 158.0
48 TraesCS2A01G225200 chr1D 88.976 127 14 0 436 562 478911800 478911674 2.290000e-34 158.0
49 TraesCS2A01G225200 chrUn 92.718 412 30 0 3287 3698 222073621 222074032 4.100000e-166 595.0
50 TraesCS2A01G225200 chrUn 92.718 412 30 0 3287 3698 311116021 311116432 4.100000e-166 595.0
51 TraesCS2A01G225200 chrUn 86.986 146 18 1 418 562 33215664 33215519 4.930000e-36 163.0
52 TraesCS2A01G225200 chrUn 89.844 128 11 1 435 562 87776356 87776481 4.930000e-36 163.0
53 TraesCS2A01G225200 chrUn 88.281 128 15 0 436 563 24072726 24072599 2.970000e-33 154.0
54 TraesCS2A01G225200 chrUn 88.281 128 15 0 436 563 30636809 30636682 2.970000e-33 154.0
55 TraesCS2A01G225200 chrUn 87.786 131 16 0 433 563 102887795 102887925 2.970000e-33 154.0
56 TraesCS2A01G225200 chrUn 86.765 136 17 1 432 566 396962997 396963132 3.840000e-32 150.0
57 TraesCS2A01G225200 chrUn 87.023 131 17 0 433 563 19647154 19647284 1.380000e-31 148.0
58 TraesCS2A01G225200 chrUn 87.023 131 17 0 433 563 59655745 59655875 1.380000e-31 148.0
59 TraesCS2A01G225200 chrUn 87.023 131 17 0 433 563 103216807 103216937 1.380000e-31 148.0
60 TraesCS2A01G225200 chr7D 84.925 597 59 17 5577 6143 538933819 538933224 5.340000e-160 575.0
61 TraesCS2A01G225200 chr7D 88.722 133 15 0 431 563 229784759 229784891 4.930000e-36 163.0
62 TraesCS2A01G225200 chr5D 90.315 413 39 1 5577 5988 458001051 458001463 1.950000e-149 540.0
63 TraesCS2A01G225200 chr5D 89.831 413 39 2 5577 5988 497817564 497817974 1.520000e-145 527.0
64 TraesCS2A01G225200 chr5D 89.062 128 14 0 436 563 382507970 382508097 6.370000e-35 159.0
65 TraesCS2A01G225200 chr3B 90.073 413 39 2 5577 5988 370939559 370939970 9.060000e-148 534.0
66 TraesCS2A01G225200 chr3B 88.276 145 14 3 3832 3976 764097547 764097406 2.940000e-38 171.0
67 TraesCS2A01G225200 chr7B 87.413 286 29 4 5298 5576 322491695 322491980 7.680000e-84 322.0
68 TraesCS2A01G225200 chr7B 84.848 297 38 4 5287 5576 559564822 559565118 6.020000e-75 292.0
69 TraesCS2A01G225200 chr7B 88.971 136 15 0 430 565 657866014 657866149 1.060000e-37 169.0
70 TraesCS2A01G225200 chr7B 86.577 149 18 2 419 565 46022805 46022953 4.930000e-36 163.0
71 TraesCS2A01G225200 chr5B 86.824 296 29 5 5287 5576 108838741 108839032 7.680000e-84 322.0
72 TraesCS2A01G225200 chr5B 85.522 297 36 5 5287 5576 490104663 490104959 2.780000e-78 303.0
73 TraesCS2A01G225200 chr5B 88.235 136 14 2 431 565 638913293 638913427 1.770000e-35 161.0
74 TraesCS2A01G225200 chr4D 86.532 297 30 6 5287 5576 447929780 447929487 9.940000e-83 318.0
75 TraesCS2A01G225200 chr4D 94.194 155 9 0 5989 6143 440824371 440824217 2.860000e-58 237.0
76 TraesCS2A01G225200 chr4D 88.148 135 14 2 435 568 380445724 380445857 6.370000e-35 159.0
77 TraesCS2A01G225200 chr3A 95.541 157 7 0 5985 6141 127170488 127170644 1.020000e-62 252.0
78 TraesCS2A01G225200 chr6A 93.671 158 10 0 5986 6143 115035886 115036043 2.860000e-58 237.0
79 TraesCS2A01G225200 chr6A 89.313 131 14 0 433 563 564663482 564663612 1.370000e-36 165.0
80 TraesCS2A01G225200 chr1B 88.732 142 13 3 3832 3973 593227659 593227797 2.940000e-38 171.0
81 TraesCS2A01G225200 chr1A 89.231 130 14 0 433 562 205120282 205120153 4.930000e-36 163.0
82 TraesCS2A01G225200 chr1A 89.062 128 14 0 436 563 39211648 39211521 6.370000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G225200 chr2A 228852944 228859086 6142 False 11345.000000 11345 100.000000 1 6143 1 chr2A.!!$F1 6142
1 TraesCS2A01G225200 chr2A 740038141 740039113 972 False 1748.000000 1748 99.075000 3290 4262 1 chr2A.!!$F3 972
2 TraesCS2A01G225200 chr2B 379784977 379789001 4024 False 1837.333333 2436 93.672333 716 5576 3 chr2B.!!$F2 4860
3 TraesCS2A01G225200 chr2B 775581987 775582915 928 True 706.000000 739 92.399500 3289 4262 2 chr2B.!!$R1 973
4 TraesCS2A01G225200 chr2D 202434455 202439318 4863 False 981.400000 2392 94.527500 2 5177 6 chr2D.!!$F2 5175
5 TraesCS2A01G225200 chr2D 102565780 102566853 1073 True 861.500000 880 95.440500 3289 4264 2 chr2D.!!$R7 975
6 TraesCS2A01G225200 chr2D 69499648 69500245 597 True 555.000000 555 84.281000 5577 6143 1 chr2D.!!$R1 566
7 TraesCS2A01G225200 chr2D 614651763 614652418 655 False 428.500000 542 88.353000 5287 5986 2 chr2D.!!$F3 699
8 TraesCS2A01G225200 chr7A 14289043 14290013 970 False 1458.000000 1458 93.731000 3290 4262 1 chr7A.!!$F1 972
9 TraesCS2A01G225200 chr6D 408894038 408895108 1070 False 852.500000 870 95.248000 3290 4263 2 chr6D.!!$F4 973
10 TraesCS2A01G225200 chr6D 430012660 430013687 1027 False 844.000000 880 94.643500 3289 4262 2 chr6D.!!$F5 973
11 TraesCS2A01G225200 chr3D 597410686 597411754 1068 True 857.000000 869 95.418000 3291 4262 2 chr3D.!!$R1 971
12 TraesCS2A01G225200 chr3D 340907589 340908181 592 False 601.000000 601 85.762000 5577 6143 1 chr3D.!!$F1 566
13 TraesCS2A01G225200 chr1D 479222879 479223474 595 True 619.000000 619 86.242000 5577 6143 1 chr1D.!!$R2 566
14 TraesCS2A01G225200 chr7D 538933224 538933819 595 True 575.000000 575 84.925000 5577 6143 1 chr7D.!!$R1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 1.090052 GTCTGCGTTGTAGATGCCCC 61.090 60.0 0.00 0.00 39.64 5.80 F
1979 2720 0.106708 GTGATCTCATTGCCGGGCTA 59.893 55.0 21.46 13.84 0.00 3.93 F
2437 3400 0.035317 TTGGTCTCGTGCAAGCATCT 59.965 50.0 0.00 0.00 0.00 2.90 F
2483 3446 0.635009 TCCCATAAGACGGAGGGAGT 59.365 55.0 0.00 0.00 45.15 3.85 F
3214 4180 1.133809 TGCTCAAGTAAGTGCCCCCT 61.134 55.0 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 2805 0.543277 ATCGCCTCAAGCCTCATGAA 59.457 50.000 0.00 0.0 38.78 2.57 R
2903 3869 0.610232 GAACAACAGGGATGCTGGCT 60.610 55.000 0.00 0.0 0.00 4.75 R
3986 5100 1.677966 CCACGACCTCCTCCTCGAA 60.678 63.158 0.00 0.0 33.96 3.71 R
4384 5500 1.803334 TGTCGATGTTACCCTTGTGC 58.197 50.000 0.00 0.0 0.00 4.57 R
5201 6351 0.109723 TTTTTCGGGTAGCTGCCTGT 59.890 50.000 26.72 0.0 36.33 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.937111 TGCTTAGTCAAGAAAAGGGTAGTT 58.063 37.500 0.00 0.00 33.20 2.24
113 114 1.670791 GATCGGGCGGGATTTTAACA 58.329 50.000 0.00 0.00 0.00 2.41
116 117 3.278668 TCGGGCGGGATTTTAACATAA 57.721 42.857 0.00 0.00 0.00 1.90
117 118 3.822940 TCGGGCGGGATTTTAACATAAT 58.177 40.909 0.00 0.00 0.00 1.28
118 119 4.208746 TCGGGCGGGATTTTAACATAATT 58.791 39.130 0.00 0.00 0.00 1.40
140 141 1.659022 TACCAGGAATCAAACCCCGA 58.341 50.000 0.00 0.00 0.00 5.14
153 154 1.147376 CCCCGACGCCCATCATAAA 59.853 57.895 0.00 0.00 0.00 1.40
174 175 1.090052 GTCTGCGTTGTAGATGCCCC 61.090 60.000 0.00 0.00 39.64 5.80
196 197 9.740710 GCCCCTAGATTGTTTAGATACATTATT 57.259 33.333 0.00 0.00 0.00 1.40
290 291 3.492313 CGTGCTGAGTTAAATTGCCTTC 58.508 45.455 0.00 0.00 0.00 3.46
304 305 7.835634 AAATTGCCTTCGTTTTGTTTTTCTA 57.164 28.000 0.00 0.00 0.00 2.10
343 344 6.553476 ACTTAACCTTAATTGGGCAGAGTTTT 59.447 34.615 0.00 0.00 0.00 2.43
379 380 8.352942 ACTTTTTCAAAATCATGTACTCTGTCC 58.647 33.333 0.00 0.00 0.00 4.02
380 381 7.815840 TTTTCAAAATCATGTACTCTGTCCA 57.184 32.000 0.00 0.00 0.00 4.02
381 382 7.439157 TTTCAAAATCATGTACTCTGTCCAG 57.561 36.000 0.00 0.00 0.00 3.86
382 383 6.114187 TCAAAATCATGTACTCTGTCCAGT 57.886 37.500 0.00 0.00 0.00 4.00
383 384 6.533730 TCAAAATCATGTACTCTGTCCAGTT 58.466 36.000 0.00 0.00 0.00 3.16
384 385 6.650807 TCAAAATCATGTACTCTGTCCAGTTC 59.349 38.462 0.00 0.00 0.00 3.01
385 386 5.745312 AATCATGTACTCTGTCCAGTTCA 57.255 39.130 0.00 0.00 0.00 3.18
386 387 5.946942 ATCATGTACTCTGTCCAGTTCAT 57.053 39.130 0.00 0.00 35.43 2.57
387 388 7.423844 AATCATGTACTCTGTCCAGTTCATA 57.576 36.000 0.00 0.00 33.85 2.15
388 389 6.208988 TCATGTACTCTGTCCAGTTCATAC 57.791 41.667 0.00 0.00 33.85 2.39
389 390 5.952347 TCATGTACTCTGTCCAGTTCATACT 59.048 40.000 0.00 0.00 33.85 2.12
390 391 7.116736 TCATGTACTCTGTCCAGTTCATACTA 58.883 38.462 0.00 0.00 33.85 1.82
391 392 6.754702 TGTACTCTGTCCAGTTCATACTAC 57.245 41.667 0.00 0.00 31.96 2.73
392 393 6.482524 TGTACTCTGTCCAGTTCATACTACT 58.517 40.000 0.00 0.00 31.96 2.57
393 394 6.946583 TGTACTCTGTCCAGTTCATACTACTT 59.053 38.462 0.00 0.00 31.96 2.24
394 395 8.105197 TGTACTCTGTCCAGTTCATACTACTTA 58.895 37.037 0.00 0.00 31.96 2.24
395 396 9.122779 GTACTCTGTCCAGTTCATACTACTTAT 57.877 37.037 0.00 0.00 31.96 1.73
396 397 8.596781 ACTCTGTCCAGTTCATACTACTTATT 57.403 34.615 0.00 0.00 31.96 1.40
397 398 8.470805 ACTCTGTCCAGTTCATACTACTTATTG 58.529 37.037 0.00 0.00 31.96 1.90
398 399 8.589701 TCTGTCCAGTTCATACTACTTATTGA 57.410 34.615 0.00 0.00 31.96 2.57
441 442 9.174166 ACACATATTTCAGTGTTAAATACTCCC 57.826 33.333 0.00 0.00 46.04 4.30
442 443 9.396022 CACATATTTCAGTGTTAAATACTCCCT 57.604 33.333 0.45 0.00 33.00 4.20
443 444 9.975218 ACATATTTCAGTGTTAAATACTCCCTT 57.025 29.630 0.45 0.00 33.00 3.95
446 447 8.706322 ATTTCAGTGTTAAATACTCCCTTTGT 57.294 30.769 0.00 0.00 0.00 2.83
447 448 7.739498 TTCAGTGTTAAATACTCCCTTTGTC 57.261 36.000 0.00 0.00 0.00 3.18
448 449 7.074653 TCAGTGTTAAATACTCCCTTTGTCT 57.925 36.000 0.00 0.00 0.00 3.41
449 450 7.514721 TCAGTGTTAAATACTCCCTTTGTCTT 58.485 34.615 0.00 0.00 0.00 3.01
450 451 8.653191 TCAGTGTTAAATACTCCCTTTGTCTTA 58.347 33.333 0.00 0.00 0.00 2.10
451 452 9.280174 CAGTGTTAAATACTCCCTTTGTCTTAA 57.720 33.333 0.00 0.00 0.00 1.85
452 453 9.856162 AGTGTTAAATACTCCCTTTGTCTTAAA 57.144 29.630 0.00 0.00 0.00 1.52
488 489 9.754382 TTAGATTTGTCTAAATACGGATGTACC 57.246 33.333 0.00 0.00 36.66 3.34
489 490 8.019656 AGATTTGTCTAAATACGGATGTACCT 57.980 34.615 0.00 0.00 36.66 3.08
490 491 9.139734 AGATTTGTCTAAATACGGATGTACCTA 57.860 33.333 0.00 0.00 36.66 3.08
491 492 9.754382 GATTTGTCTAAATACGGATGTACCTAA 57.246 33.333 0.00 0.00 36.66 2.69
495 496 9.578576 TGTCTAAATACGGATGTACCTAATACT 57.421 33.333 0.00 0.00 34.56 2.12
503 504 8.882415 ACGGATGTACCTAATACTAAAATGTG 57.118 34.615 0.00 0.00 34.56 3.21
504 505 8.698210 ACGGATGTACCTAATACTAAAATGTGA 58.302 33.333 0.00 0.00 34.56 3.58
505 506 8.975439 CGGATGTACCTAATACTAAAATGTGAC 58.025 37.037 0.00 0.00 34.56 3.67
556 557 8.780249 TCTAAGACAAAAATTTTAAGACGGAGG 58.220 33.333 3.34 0.00 0.00 4.30
557 558 6.327279 AGACAAAAATTTTAAGACGGAGGG 57.673 37.500 3.34 0.00 0.00 4.30
558 559 6.066032 AGACAAAAATTTTAAGACGGAGGGA 58.934 36.000 3.34 0.00 0.00 4.20
559 560 6.206829 AGACAAAAATTTTAAGACGGAGGGAG 59.793 38.462 3.34 0.00 0.00 4.30
560 561 5.831525 ACAAAAATTTTAAGACGGAGGGAGT 59.168 36.000 3.34 0.00 0.00 3.85
561 562 6.999871 ACAAAAATTTTAAGACGGAGGGAGTA 59.000 34.615 3.34 0.00 0.00 2.59
562 563 7.040892 ACAAAAATTTTAAGACGGAGGGAGTAC 60.041 37.037 3.34 0.00 0.00 2.73
609 610 6.698008 TTGGCATTGTAAGGATATGAACAG 57.302 37.500 0.00 0.00 0.00 3.16
644 645 6.591448 TGCAGGTACGATATGATGATCAAATC 59.409 38.462 0.00 0.00 0.00 2.17
691 1407 1.294780 CCAGAGACCTCACCTGTGC 59.705 63.158 0.00 0.00 0.00 4.57
694 1410 2.122413 AGACCTCACCTGTGCCCA 60.122 61.111 0.00 0.00 0.00 5.36
698 1414 1.379916 CCTCACCTGTGCCCATGAA 59.620 57.895 0.00 0.00 0.00 2.57
707 1423 2.045926 GCCCATGAAGCAGACGGT 60.046 61.111 0.00 0.00 0.00 4.83
714 1430 3.181465 CCATGAAGCAGACGGTTATAGGT 60.181 47.826 0.00 0.00 31.57 3.08
853 1582 2.419198 CTTCGATCGGCCAGGGAG 59.581 66.667 16.41 0.00 0.00 4.30
862 1591 2.771762 GCCAGGGAGCCCTCTCAT 60.772 66.667 4.74 0.00 46.28 2.90
870 1599 2.771762 GCCCTCTCATGGCCCTCT 60.772 66.667 0.00 0.00 43.33 3.69
871 1600 2.817056 GCCCTCTCATGGCCCTCTC 61.817 68.421 0.00 0.00 43.33 3.20
872 1601 1.383664 CCCTCTCATGGCCCTCTCA 60.384 63.158 0.00 0.00 0.00 3.27
873 1602 1.694133 CCCTCTCATGGCCCTCTCAC 61.694 65.000 0.00 0.00 0.00 3.51
874 1603 1.440893 CTCTCATGGCCCTCTCACG 59.559 63.158 0.00 0.00 0.00 4.35
875 1604 2.025767 CTCTCATGGCCCTCTCACGG 62.026 65.000 0.00 0.00 0.00 4.94
876 1605 3.746949 CTCATGGCCCTCTCACGGC 62.747 68.421 0.00 0.00 46.29 5.68
896 1625 2.180204 CCGGCCAATAGAAGCACGG 61.180 63.158 2.24 0.00 36.81 4.94
1005 1734 3.646715 TTTCCCCCGCCACAGAGG 61.647 66.667 0.00 0.00 41.84 3.69
1072 1801 1.628340 TGCGAATTTGAGAGGGAGGAA 59.372 47.619 0.00 0.00 0.00 3.36
1075 1804 2.420687 CGAATTTGAGAGGGAGGAAGGG 60.421 54.545 0.00 0.00 0.00 3.95
1166 1895 3.993535 CTCAAAGGTGAGCCTGGC 58.006 61.111 11.65 11.65 46.33 4.85
1234 1963 0.811616 CCTTGGCGCATCTACTGGTC 60.812 60.000 10.83 0.00 0.00 4.02
1289 2020 2.125673 ACGGTCGCATTTCCTCCG 60.126 61.111 0.00 0.00 45.53 4.63
1351 2087 1.948834 CATCTGTTGGCGCATTCCATA 59.051 47.619 10.83 0.00 35.77 2.74
1437 2173 7.865385 CGTCTAAATTTGTTCCCTGATTTTTCA 59.135 33.333 0.00 0.00 0.00 2.69
1490 2226 3.953775 CAGGTGGCCGTGGTTCCT 61.954 66.667 0.00 0.00 0.00 3.36
1660 2396 2.363925 GGACTACGAGGCCCTGGT 60.364 66.667 3.21 3.21 37.46 4.00
1785 2521 3.263425 TCTTGGCTCTTTACGATCCCTTT 59.737 43.478 0.00 0.00 0.00 3.11
1786 2522 2.985896 TGGCTCTTTACGATCCCTTTG 58.014 47.619 0.00 0.00 0.00 2.77
1789 2525 3.374367 GGCTCTTTACGATCCCTTTGTTC 59.626 47.826 0.00 0.00 0.00 3.18
1790 2526 4.000988 GCTCTTTACGATCCCTTTGTTCA 58.999 43.478 0.00 0.00 0.00 3.18
1791 2527 4.454504 GCTCTTTACGATCCCTTTGTTCAA 59.545 41.667 0.00 0.00 0.00 2.69
1838 2579 2.554893 TGGATTAGAAACACCCGTTTGC 59.445 45.455 0.00 0.00 45.40 3.68
1937 2678 0.745845 CCAAGCCAACCTGATCCTCG 60.746 60.000 0.00 0.00 0.00 4.63
1979 2720 0.106708 GTGATCTCATTGCCGGGCTA 59.893 55.000 21.46 13.84 0.00 3.93
2051 2798 8.352942 GTTTTCAAAGTACTCTGGTTTCATGAT 58.647 33.333 0.00 0.00 0.00 2.45
2052 2799 8.463930 TTTCAAAGTACTCTGGTTTCATGATT 57.536 30.769 0.00 0.00 0.00 2.57
2092 2842 5.185454 TGAGGCGATGTACTCAAATCAAAT 58.815 37.500 0.00 0.00 40.51 2.32
2093 2843 6.345298 TGAGGCGATGTACTCAAATCAAATA 58.655 36.000 0.00 0.00 40.51 1.40
2094 2844 6.257849 TGAGGCGATGTACTCAAATCAAATAC 59.742 38.462 0.00 0.00 40.51 1.89
2095 2845 6.112734 AGGCGATGTACTCAAATCAAATACA 58.887 36.000 0.00 0.00 0.00 2.29
2096 2846 6.258727 AGGCGATGTACTCAAATCAAATACAG 59.741 38.462 0.00 0.00 0.00 2.74
2205 2955 3.596214 GCGTCTAGGTTCATTTTCTCCA 58.404 45.455 0.00 0.00 0.00 3.86
2218 2968 4.360951 TTTTCTCCATTGTACGGGACTT 57.639 40.909 0.00 0.00 0.00 3.01
2351 3311 0.246360 GCCACCCACTTATTTGTGCC 59.754 55.000 0.00 0.00 36.68 5.01
2376 3339 6.183360 CGTATGTATGTATATCACGGACCCAT 60.183 42.308 0.00 0.00 0.00 4.00
2377 3340 6.620877 ATGTATGTATATCACGGACCCATT 57.379 37.500 0.00 0.00 0.00 3.16
2380 3343 5.560722 ATGTATATCACGGACCCATTGAA 57.439 39.130 0.00 0.00 0.00 2.69
2384 3347 6.831353 TGTATATCACGGACCCATTGAAAAAT 59.169 34.615 0.00 0.00 0.00 1.82
2385 3348 6.790232 ATATCACGGACCCATTGAAAAATT 57.210 33.333 0.00 0.00 0.00 1.82
2388 3351 5.960113 TCACGGACCCATTGAAAAATTATG 58.040 37.500 0.00 0.00 0.00 1.90
2391 3354 7.340743 TCACGGACCCATTGAAAAATTATGTAT 59.659 33.333 0.00 0.00 0.00 2.29
2392 3355 7.434897 CACGGACCCATTGAAAAATTATGTATG 59.565 37.037 0.00 0.00 0.00 2.39
2393 3356 6.922957 CGGACCCATTGAAAAATTATGTATGG 59.077 38.462 0.00 0.00 0.00 2.74
2394 3357 7.417342 CGGACCCATTGAAAAATTATGTATGGT 60.417 37.037 0.00 0.00 31.34 3.55
2398 3361 9.927668 CCCATTGAAAAATTATGTATGGTATCC 57.072 33.333 0.00 0.00 31.34 2.59
2403 3366 9.928618 TGAAAAATTATGTATGGTATCCAAGGA 57.071 29.630 0.00 0.00 36.95 3.36
2412 3375 7.506114 TGTATGGTATCCAAGGATAAAGACAC 58.494 38.462 10.27 6.36 38.63 3.67
2413 3376 6.575244 ATGGTATCCAAGGATAAAGACACA 57.425 37.500 10.27 4.49 38.63 3.72
2414 3377 6.575244 TGGTATCCAAGGATAAAGACACAT 57.425 37.500 10.27 0.00 38.63 3.21
2416 3379 5.765182 GGTATCCAAGGATAAAGACACATGG 59.235 44.000 10.27 0.00 38.63 3.66
2417 3380 4.927267 TCCAAGGATAAAGACACATGGT 57.073 40.909 0.00 0.00 0.00 3.55
2418 3381 5.255397 TCCAAGGATAAAGACACATGGTT 57.745 39.130 0.00 0.00 0.00 3.67
2419 3382 5.640147 TCCAAGGATAAAGACACATGGTTT 58.360 37.500 0.00 0.00 0.00 3.27
2420 3383 5.476599 TCCAAGGATAAAGACACATGGTTTG 59.523 40.000 0.00 0.00 0.00 2.93
2422 3385 4.998051 AGGATAAAGACACATGGTTTGGT 58.002 39.130 0.00 0.00 0.00 3.67
2423 3386 5.010282 AGGATAAAGACACATGGTTTGGTC 58.990 41.667 0.00 0.00 0.00 4.02
2424 3387 5.010282 GGATAAAGACACATGGTTTGGTCT 58.990 41.667 0.00 0.00 37.42 3.85
2425 3388 5.123979 GGATAAAGACACATGGTTTGGTCTC 59.876 44.000 0.00 0.00 35.86 3.36
2426 3389 2.169832 AGACACATGGTTTGGTCTCG 57.830 50.000 0.00 0.00 33.30 4.04
2427 3390 1.416401 AGACACATGGTTTGGTCTCGT 59.584 47.619 0.00 0.00 33.30 4.18
2428 3391 1.531149 GACACATGGTTTGGTCTCGTG 59.469 52.381 0.00 0.00 0.00 4.35
2429 3392 0.238289 CACATGGTTTGGTCTCGTGC 59.762 55.000 0.00 0.00 0.00 5.34
2430 3393 0.179032 ACATGGTTTGGTCTCGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
2431 3394 0.950836 CATGGTTTGGTCTCGTGCAA 59.049 50.000 0.00 0.00 0.00 4.08
2432 3395 1.069022 CATGGTTTGGTCTCGTGCAAG 60.069 52.381 0.00 0.00 0.00 4.01
2433 3396 1.282875 GGTTTGGTCTCGTGCAAGC 59.717 57.895 0.00 0.00 0.00 4.01
2434 3397 1.444119 GGTTTGGTCTCGTGCAAGCA 61.444 55.000 0.00 0.00 0.00 3.91
2435 3398 0.593128 GTTTGGTCTCGTGCAAGCAT 59.407 50.000 0.00 0.00 0.00 3.79
2436 3399 0.874390 TTTGGTCTCGTGCAAGCATC 59.126 50.000 0.00 0.00 0.00 3.91
2437 3400 0.035317 TTGGTCTCGTGCAAGCATCT 59.965 50.000 0.00 0.00 0.00 2.90
2438 3401 0.671472 TGGTCTCGTGCAAGCATCTG 60.671 55.000 0.00 0.00 0.00 2.90
2439 3402 1.423056 GTCTCGTGCAAGCATCTGC 59.577 57.895 0.00 0.00 42.95 4.26
2440 3403 2.096442 TCTCGTGCAAGCATCTGCG 61.096 57.895 0.00 0.00 45.74 5.18
2441 3404 2.048316 TCGTGCAAGCATCTGCGA 60.048 55.556 0.00 0.00 45.74 5.10
2442 3405 1.426816 CTCGTGCAAGCATCTGCGAT 61.427 55.000 0.00 0.00 45.74 4.58
2443 3406 1.011463 CGTGCAAGCATCTGCGATC 60.011 57.895 0.00 0.00 45.74 3.69
2444 3407 1.698714 CGTGCAAGCATCTGCGATCA 61.699 55.000 0.00 0.00 45.74 2.92
2445 3408 0.661552 GTGCAAGCATCTGCGATCAT 59.338 50.000 0.00 0.00 45.74 2.45
2446 3409 1.065102 GTGCAAGCATCTGCGATCATT 59.935 47.619 0.00 0.00 45.74 2.57
2447 3410 1.332686 TGCAAGCATCTGCGATCATTC 59.667 47.619 0.00 0.00 45.74 2.67
2448 3411 3.259632 TGCAAGCATCTGCGATCATTCA 61.260 45.455 0.00 0.00 45.74 2.57
2449 3412 5.082754 TGCAAGCATCTGCGATCATTCAG 62.083 47.826 0.00 0.00 45.74 3.02
2451 3414 2.665056 GCATCTGCGATCATTCAGTG 57.335 50.000 0.00 0.00 0.00 3.66
2452 3415 1.263484 GCATCTGCGATCATTCAGTGG 59.737 52.381 0.00 0.00 0.00 4.00
2453 3416 2.558378 CATCTGCGATCATTCAGTGGT 58.442 47.619 0.00 0.00 0.00 4.16
2454 3417 3.721035 CATCTGCGATCATTCAGTGGTA 58.279 45.455 0.00 0.00 0.00 3.25
2455 3418 3.165058 TCTGCGATCATTCAGTGGTAC 57.835 47.619 0.00 0.00 0.00 3.34
2456 3419 2.760650 TCTGCGATCATTCAGTGGTACT 59.239 45.455 0.00 0.00 0.00 2.73
2457 3420 3.195610 TCTGCGATCATTCAGTGGTACTT 59.804 43.478 0.00 0.00 0.00 2.24
2458 3421 3.521560 TGCGATCATTCAGTGGTACTTC 58.478 45.455 0.00 0.00 0.00 3.01
2459 3422 2.866762 GCGATCATTCAGTGGTACTTCC 59.133 50.000 0.00 0.00 0.00 3.46
2460 3423 3.430929 GCGATCATTCAGTGGTACTTCCT 60.431 47.826 0.00 0.00 37.07 3.36
2461 3424 4.363999 CGATCATTCAGTGGTACTTCCTC 58.636 47.826 0.00 0.00 37.07 3.71
2462 3425 4.698575 GATCATTCAGTGGTACTTCCTCC 58.301 47.826 0.00 0.00 37.07 4.30
2463 3426 3.516586 TCATTCAGTGGTACTTCCTCCA 58.483 45.455 0.00 0.00 37.07 3.86
2464 3427 4.104086 TCATTCAGTGGTACTTCCTCCAT 58.896 43.478 0.00 0.00 36.09 3.41
2465 3428 4.162320 TCATTCAGTGGTACTTCCTCCATC 59.838 45.833 0.00 0.00 36.09 3.51
2466 3429 2.467880 TCAGTGGTACTTCCTCCATCC 58.532 52.381 0.00 0.00 36.09 3.51
2467 3430 1.486726 CAGTGGTACTTCCTCCATCCC 59.513 57.143 0.00 0.00 36.09 3.85
2468 3431 1.080498 AGTGGTACTTCCTCCATCCCA 59.920 52.381 0.00 0.00 36.09 4.37
2469 3432 2.127708 GTGGTACTTCCTCCATCCCAT 58.872 52.381 0.00 0.00 36.09 4.00
2470 3433 3.051341 AGTGGTACTTCCTCCATCCCATA 60.051 47.826 0.00 0.00 36.09 2.74
2471 3434 3.714798 GTGGTACTTCCTCCATCCCATAA 59.285 47.826 0.00 0.00 36.09 1.90
2472 3435 3.973973 TGGTACTTCCTCCATCCCATAAG 59.026 47.826 0.00 0.00 37.07 1.73
2473 3436 4.232091 GGTACTTCCTCCATCCCATAAGA 58.768 47.826 0.00 0.00 0.00 2.10
2474 3437 4.040584 GGTACTTCCTCCATCCCATAAGAC 59.959 50.000 0.00 0.00 0.00 3.01
2475 3438 2.700897 ACTTCCTCCATCCCATAAGACG 59.299 50.000 0.00 0.00 0.00 4.18
2476 3439 1.717032 TCCTCCATCCCATAAGACGG 58.283 55.000 0.00 0.00 0.00 4.79
2477 3440 1.219469 TCCTCCATCCCATAAGACGGA 59.781 52.381 0.00 0.00 0.00 4.69
2478 3441 1.620819 CCTCCATCCCATAAGACGGAG 59.379 57.143 0.00 0.00 39.82 4.63
2479 3442 1.620819 CTCCATCCCATAAGACGGAGG 59.379 57.143 0.00 0.00 37.07 4.30
2480 3443 0.687354 CCATCCCATAAGACGGAGGG 59.313 60.000 0.00 0.00 43.22 4.30
2482 3445 3.533697 TCCCATAAGACGGAGGGAG 57.466 57.895 0.00 0.00 45.15 4.30
2483 3446 0.635009 TCCCATAAGACGGAGGGAGT 59.365 55.000 0.00 0.00 45.15 3.85
2484 3447 1.854939 TCCCATAAGACGGAGGGAGTA 59.145 52.381 0.00 0.00 45.15 2.59
2485 3448 1.962100 CCCATAAGACGGAGGGAGTAC 59.038 57.143 0.00 0.00 44.30 2.73
2486 3449 2.662866 CCATAAGACGGAGGGAGTACA 58.337 52.381 0.00 0.00 0.00 2.90
2487 3450 3.028850 CCATAAGACGGAGGGAGTACAA 58.971 50.000 0.00 0.00 0.00 2.41
2566 3532 3.834231 TCACTGATGTGGATTCACTCTGA 59.166 43.478 5.55 0.00 43.94 3.27
2705 3671 2.093973 CGACAAGGTGGAGAAGCACTAT 60.094 50.000 0.00 0.00 0.00 2.12
2795 3761 2.775911 TCTCTTTCTACGAGGACGGA 57.224 50.000 0.00 0.00 44.46 4.69
2885 3851 2.041265 ACCGGGCAGAGGAAGGAT 59.959 61.111 6.32 0.00 0.00 3.24
2903 3869 2.770868 ATCAGTCCCCTGGCACCAGA 62.771 60.000 18.44 0.00 46.30 3.86
2924 3890 1.619654 CCAGCATCCCTGTTGTTCAA 58.380 50.000 0.00 0.00 40.06 2.69
2955 3921 1.371337 CTCCATGCACCATGACACCG 61.371 60.000 6.77 0.00 43.81 4.94
2974 3940 2.539547 CCGCCTGCATTTTTCAGTATCG 60.540 50.000 0.00 0.00 0.00 2.92
3026 3992 6.757897 TGTGTCTTGAACTCTTGATGTTTT 57.242 33.333 0.00 0.00 0.00 2.43
3048 4014 8.915654 GTTTTGACACCTAATGATCATTTGAAC 58.084 33.333 25.26 16.20 32.50 3.18
3214 4180 1.133809 TGCTCAAGTAAGTGCCCCCT 61.134 55.000 0.00 0.00 0.00 4.79
3233 4199 3.117888 CCCTGGTTGCAGAGGTGTAATAT 60.118 47.826 7.51 0.00 30.33 1.28
3281 4247 4.213482 AGGAATTTACACGCACTTGAACTC 59.787 41.667 0.00 0.00 0.00 3.01
3282 4248 4.213482 GGAATTTACACGCACTTGAACTCT 59.787 41.667 0.00 0.00 0.00 3.24
3283 4249 5.277828 GGAATTTACACGCACTTGAACTCTT 60.278 40.000 0.00 0.00 0.00 2.85
3284 4250 4.530094 TTTACACGCACTTGAACTCTTG 57.470 40.909 0.00 0.00 0.00 3.02
3285 4251 2.024176 ACACGCACTTGAACTCTTGT 57.976 45.000 0.00 0.00 0.00 3.16
3286 4252 1.665679 ACACGCACTTGAACTCTTGTG 59.334 47.619 0.00 0.00 0.00 3.33
3287 4253 1.665679 CACGCACTTGAACTCTTGTGT 59.334 47.619 0.00 0.00 32.99 3.72
4661 5788 3.900941 ACATGGTTTGCTGAAACGATTC 58.099 40.909 0.00 0.00 42.20 2.52
4822 5949 1.736586 CTTCCCGACGATCCTCCTG 59.263 63.158 0.00 0.00 0.00 3.86
4971 6098 3.849951 CCGGCGGTGTCTAGGCAT 61.850 66.667 19.97 0.00 0.00 4.40
4989 6116 5.479306 AGGCATTATTATGTAGTGGTAGCG 58.521 41.667 0.00 0.00 34.12 4.26
5023 6158 3.542712 CAACGGAAATGTTGGAGACAG 57.457 47.619 0.00 0.00 44.27 3.51
5037 6172 0.543174 AGACAGAGGAGTGTGGGGAC 60.543 60.000 0.00 0.00 0.00 4.46
5107 6242 5.977489 TGTGTGTAGTTGTAGCTAGATGT 57.023 39.130 0.00 0.00 0.00 3.06
5165 6300 4.644103 ATTTTGATCCAAGGCTTCATCG 57.356 40.909 0.00 0.00 0.00 3.84
5180 6315 4.870426 GCTTCATCGAGAGTTTGGACAATA 59.130 41.667 0.00 0.00 0.00 1.90
5185 6335 7.426410 TCATCGAGAGTTTGGACAATATACTC 58.574 38.462 7.09 7.09 36.38 2.59
5188 6338 5.455849 CGAGAGTTTGGACAATATACTCGTG 59.544 44.000 0.00 8.25 40.03 4.35
5198 6348 3.984508 ATATACTCGTGGTTCACTCGG 57.015 47.619 0.00 0.00 36.76 4.63
5199 6349 1.542492 ATACTCGTGGTTCACTCGGT 58.458 50.000 0.00 0.00 36.76 4.69
5200 6350 0.877071 TACTCGTGGTTCACTCGGTC 59.123 55.000 0.00 0.00 36.76 4.79
5201 6351 1.105167 ACTCGTGGTTCACTCGGTCA 61.105 55.000 0.00 0.00 36.76 4.02
5204 6354 0.939577 CGTGGTTCACTCGGTCACAG 60.940 60.000 0.00 0.00 32.77 3.66
5205 6355 0.600255 GTGGTTCACTCGGTCACAGG 60.600 60.000 0.00 0.00 0.00 4.00
5252 6405 2.899900 AGCAGTCACAGGTCAGTTATCA 59.100 45.455 0.00 0.00 0.00 2.15
5253 6406 2.996621 GCAGTCACAGGTCAGTTATCAC 59.003 50.000 0.00 0.00 0.00 3.06
5264 6417 3.375299 GTCAGTTATCACATTCTGGTGCC 59.625 47.826 0.00 0.00 38.66 5.01
5267 6420 3.053395 AGTTATCACATTCTGGTGCCCAT 60.053 43.478 0.00 0.00 38.66 4.00
5284 6437 3.321111 GCCCATTGATGCTCAATCAGATT 59.679 43.478 8.01 0.00 43.03 2.40
5290 6452 4.851843 TGATGCTCAATCAGATTCTGGTT 58.148 39.130 13.59 10.08 40.50 3.67
5360 6525 4.246712 TCTAGTCCGGAAGTTGGATAGT 57.753 45.455 5.23 0.00 37.93 2.12
5366 6531 4.341520 GTCCGGAAGTTGGATAGTATCACT 59.658 45.833 5.23 5.06 37.93 3.41
5396 6561 1.609208 AATTTCAGAGTTGCGGCAGT 58.391 45.000 1.67 0.00 0.00 4.40
5400 6565 1.186200 TCAGAGTTGCGGCAGTATCT 58.814 50.000 1.67 5.35 0.00 1.98
5413 6582 3.088532 GCAGTATCTCCTCATCCTCGAT 58.911 50.000 0.00 0.00 0.00 3.59
5415 6584 4.331108 CAGTATCTCCTCATCCTCGATGA 58.669 47.826 4.38 4.38 45.35 2.92
5419 6588 4.044946 TCTCCTCATCCTCGATGATCAT 57.955 45.455 8.25 8.25 46.16 2.45
5420 6589 5.184892 TCTCCTCATCCTCGATGATCATA 57.815 43.478 8.54 0.00 46.16 2.15
5426 6595 6.350629 TCATCCTCGATGATCATATTGTGT 57.649 37.500 8.54 0.00 43.11 3.72
5468 6637 1.523758 CCTCTCACAAGGTTTTCGGG 58.476 55.000 0.00 0.00 0.00 5.14
5484 6653 2.302260 TCGGGTCTCATTGTTTTGCAA 58.698 42.857 0.00 0.00 41.89 4.08
5509 6678 2.352342 CACGAACAACTACAAAACGGGT 59.648 45.455 0.00 0.00 0.00 5.28
5532 6701 4.104383 TGAAGAACTTCAAATGCCCTCT 57.896 40.909 13.78 0.00 45.56 3.69
5539 6709 3.508793 ACTTCAAATGCCCTCTTGACATG 59.491 43.478 0.00 0.00 31.41 3.21
5547 6717 2.941720 GCCCTCTTGACATGCTTTCTAG 59.058 50.000 0.00 0.00 0.00 2.43
5566 6736 1.878734 AGCTGCTTCTTGTCTTTGAGC 59.121 47.619 0.00 0.00 0.00 4.26
5580 6750 0.466007 TTGAGCAAAGTGAGCTGCCA 60.466 50.000 0.00 0.00 43.58 4.92
5590 6760 0.179092 TGAGCTGCCATCTCGACATG 60.179 55.000 0.00 0.00 33.41 3.21
5600 6770 3.557595 CCATCTCGACATGCTTTCTAACC 59.442 47.826 0.00 0.00 0.00 2.85
5602 6772 2.230508 TCTCGACATGCTTTCTAACCGT 59.769 45.455 0.00 0.00 0.00 4.83
5615 6785 6.457799 GCTTTCTAACCGTTTCTTGTCTTTGA 60.458 38.462 0.00 0.00 0.00 2.69
5627 6797 2.923121 TGTCTTTGAGCAAAGTGAGCT 58.077 42.857 19.15 0.00 45.88 4.09
5661 6832 1.236616 TGCGTTTGAGATGGTGCTGG 61.237 55.000 0.00 0.00 0.00 4.85
5662 6833 1.237285 GCGTTTGAGATGGTGCTGGT 61.237 55.000 0.00 0.00 0.00 4.00
5671 6842 3.182152 AGATGGTGCTGGTAAAGGTAGT 58.818 45.455 0.00 0.00 0.00 2.73
5755 6926 0.905357 TAGTGGCAAGGAGGAGCTTC 59.095 55.000 0.00 0.00 0.00 3.86
5780 6951 3.213206 TCAGTCAGCCTCACAAACAAT 57.787 42.857 0.00 0.00 0.00 2.71
5784 6955 2.362077 GTCAGCCTCACAAACAATGGTT 59.638 45.455 0.00 0.00 39.43 3.67
5801 6972 3.339141 TGGTTATCGTTGCAGCACATTA 58.661 40.909 0.00 0.00 0.00 1.90
5802 6973 3.373748 TGGTTATCGTTGCAGCACATTAG 59.626 43.478 0.00 0.00 0.00 1.73
5845 7017 1.067915 GCCAAAGAAGCGTGCCAAATA 60.068 47.619 0.00 0.00 0.00 1.40
5887 7062 2.225091 TGCTTCAAGAATGATGGTGGGT 60.225 45.455 0.00 0.00 34.96 4.51
5926 7101 5.022787 TGATATTGCCCTTGTAAAGCCTTT 58.977 37.500 0.00 0.00 44.44 3.11
5956 7131 4.895961 TCTTTCATTTCCAATGCATGCAA 58.104 34.783 26.68 7.30 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.433615 CCCTTTTCTTGACTAAGCAGACG 59.566 47.826 0.00 0.00 33.82 4.18
4 5 5.562298 ACTACCCTTTTCTTGACTAAGCA 57.438 39.130 0.00 0.00 33.82 3.91
10 11 6.289064 TCTTCTGAACTACCCTTTTCTTGAC 58.711 40.000 0.00 0.00 0.00 3.18
11 12 6.494666 TCTTCTGAACTACCCTTTTCTTGA 57.505 37.500 0.00 0.00 0.00 3.02
16 17 8.589701 TTTTTCTTCTTCTGAACTACCCTTTT 57.410 30.769 0.00 0.00 0.00 2.27
89 90 0.763223 AAATCCCGCCCGATCCTAGT 60.763 55.000 0.00 0.00 0.00 2.57
113 114 7.450323 CGGGGTTTGATTCCTGGTAATAATTAT 59.550 37.037 0.00 0.00 0.00 1.28
116 117 5.103855 TCGGGGTTTGATTCCTGGTAATAAT 60.104 40.000 0.00 0.00 0.00 1.28
117 118 4.227754 TCGGGGTTTGATTCCTGGTAATAA 59.772 41.667 0.00 0.00 0.00 1.40
118 119 3.781407 TCGGGGTTTGATTCCTGGTAATA 59.219 43.478 0.00 0.00 0.00 0.98
140 141 1.651987 CAGACGTTTATGATGGGCGT 58.348 50.000 0.00 0.00 38.55 5.68
196 197 8.251721 GGAGCTAAAGACTCAAACTAGAACATA 58.748 37.037 0.00 0.00 35.79 2.29
197 198 7.100409 GGAGCTAAAGACTCAAACTAGAACAT 58.900 38.462 0.00 0.00 35.79 2.71
198 199 6.041637 TGGAGCTAAAGACTCAAACTAGAACA 59.958 38.462 0.00 0.00 35.79 3.18
211 212 5.645497 ACAATTGTCTGATGGAGCTAAAGAC 59.355 40.000 4.92 0.00 38.18 3.01
218 219 5.886960 ACTTAACAATTGTCTGATGGAGC 57.113 39.130 12.39 0.00 0.00 4.70
322 323 4.283467 GGAAAACTCTGCCCAATTAAGGTT 59.717 41.667 0.00 0.00 0.00 3.50
359 360 6.114187 ACTGGACAGAGTACATGATTTTGA 57.886 37.500 6.29 0.00 0.00 2.69
360 361 6.427853 TGAACTGGACAGAGTACATGATTTTG 59.572 38.462 6.29 0.00 0.00 2.44
361 362 6.533730 TGAACTGGACAGAGTACATGATTTT 58.466 36.000 6.29 0.00 0.00 1.82
362 363 6.114187 TGAACTGGACAGAGTACATGATTT 57.886 37.500 6.29 0.00 0.00 2.17
363 364 5.745312 TGAACTGGACAGAGTACATGATT 57.255 39.130 6.29 0.00 0.00 2.57
364 365 5.946942 ATGAACTGGACAGAGTACATGAT 57.053 39.130 6.29 0.00 0.00 2.45
365 366 5.952347 AGTATGAACTGGACAGAGTACATGA 59.048 40.000 6.29 0.00 33.57 3.07
366 367 6.214191 AGTATGAACTGGACAGAGTACATG 57.786 41.667 6.29 0.00 33.57 3.21
367 368 7.120051 AGTAGTATGAACTGGACAGAGTACAT 58.880 38.462 6.29 8.01 37.64 2.29
368 369 6.482524 AGTAGTATGAACTGGACAGAGTACA 58.517 40.000 6.29 1.47 37.64 2.90
369 370 7.393841 AAGTAGTATGAACTGGACAGAGTAC 57.606 40.000 6.29 0.00 36.36 2.73
370 371 9.696572 AATAAGTAGTATGAACTGGACAGAGTA 57.303 33.333 6.29 0.00 36.36 2.59
371 372 8.470805 CAATAAGTAGTATGAACTGGACAGAGT 58.529 37.037 6.29 0.00 36.36 3.24
372 373 8.687242 TCAATAAGTAGTATGAACTGGACAGAG 58.313 37.037 6.29 0.00 36.36 3.35
373 374 8.589701 TCAATAAGTAGTATGAACTGGACAGA 57.410 34.615 6.29 0.00 36.36 3.41
374 375 9.469807 GATCAATAAGTAGTATGAACTGGACAG 57.530 37.037 0.00 0.00 36.36 3.51
375 376 8.977412 TGATCAATAAGTAGTATGAACTGGACA 58.023 33.333 0.00 0.00 36.36 4.02
376 377 9.817809 TTGATCAATAAGTAGTATGAACTGGAC 57.182 33.333 3.38 0.00 36.36 4.02
380 381 9.314321 CCGTTTGATCAATAAGTAGTATGAACT 57.686 33.333 9.40 0.00 39.91 3.01
381 382 9.309516 TCCGTTTGATCAATAAGTAGTATGAAC 57.690 33.333 9.40 0.00 0.00 3.18
462 463 9.754382 GGTACATCCGTATTTAGACAAATCTAA 57.246 33.333 0.00 0.00 44.17 2.10
463 464 9.139734 AGGTACATCCGTATTTAGACAAATCTA 57.860 33.333 0.00 0.00 41.99 1.98
464 465 8.019656 AGGTACATCCGTATTTAGACAAATCT 57.980 34.615 0.00 0.00 41.99 2.40
465 466 9.754382 TTAGGTACATCCGTATTTAGACAAATC 57.246 33.333 0.00 0.00 41.99 2.17
469 470 9.578576 AGTATTAGGTACATCCGTATTTAGACA 57.421 33.333 0.00 0.00 41.99 3.41
477 478 9.970395 CACATTTTAGTATTAGGTACATCCGTA 57.030 33.333 0.00 0.00 41.99 4.02
478 479 8.698210 TCACATTTTAGTATTAGGTACATCCGT 58.302 33.333 0.00 0.00 41.99 4.69
479 480 8.975439 GTCACATTTTAGTATTAGGTACATCCG 58.025 37.037 0.00 0.00 41.99 4.18
530 531 8.780249 CCTCCGTCTTAAAATTTTTGTCTTAGA 58.220 33.333 9.06 1.09 0.00 2.10
531 532 8.021396 CCCTCCGTCTTAAAATTTTTGTCTTAG 58.979 37.037 9.06 0.21 0.00 2.18
532 533 7.720515 TCCCTCCGTCTTAAAATTTTTGTCTTA 59.279 33.333 9.06 0.00 0.00 2.10
533 534 6.548251 TCCCTCCGTCTTAAAATTTTTGTCTT 59.452 34.615 9.06 0.00 0.00 3.01
534 535 6.066032 TCCCTCCGTCTTAAAATTTTTGTCT 58.934 36.000 9.06 0.00 0.00 3.41
535 536 6.016527 ACTCCCTCCGTCTTAAAATTTTTGTC 60.017 38.462 9.06 0.62 0.00 3.18
536 537 5.831525 ACTCCCTCCGTCTTAAAATTTTTGT 59.168 36.000 9.06 0.00 0.00 2.83
537 538 6.327279 ACTCCCTCCGTCTTAAAATTTTTG 57.673 37.500 9.06 3.23 0.00 2.44
538 539 6.999871 TGTACTCCCTCCGTCTTAAAATTTTT 59.000 34.615 9.06 0.00 0.00 1.94
539 540 6.536447 TGTACTCCCTCCGTCTTAAAATTTT 58.464 36.000 8.75 8.75 0.00 1.82
540 541 6.117975 TGTACTCCCTCCGTCTTAAAATTT 57.882 37.500 0.00 0.00 0.00 1.82
541 542 5.750352 TGTACTCCCTCCGTCTTAAAATT 57.250 39.130 0.00 0.00 0.00 1.82
542 543 5.163332 GGATGTACTCCCTCCGTCTTAAAAT 60.163 44.000 0.00 0.00 38.19 1.82
543 544 4.161001 GGATGTACTCCCTCCGTCTTAAAA 59.839 45.833 0.00 0.00 38.19 1.52
544 545 3.703052 GGATGTACTCCCTCCGTCTTAAA 59.297 47.826 0.00 0.00 38.19 1.52
545 546 3.294214 GGATGTACTCCCTCCGTCTTAA 58.706 50.000 0.00 0.00 38.19 1.85
546 547 2.242965 TGGATGTACTCCCTCCGTCTTA 59.757 50.000 8.36 0.00 44.23 2.10
547 548 1.006758 TGGATGTACTCCCTCCGTCTT 59.993 52.381 8.36 0.00 44.23 3.01
548 549 0.629596 TGGATGTACTCCCTCCGTCT 59.370 55.000 8.36 0.00 44.23 4.18
549 550 1.705873 ATGGATGTACTCCCTCCGTC 58.294 55.000 8.36 0.00 44.23 4.79
550 551 2.176247 AATGGATGTACTCCCTCCGT 57.824 50.000 8.36 2.34 44.23 4.69
551 552 4.377897 GTTAAATGGATGTACTCCCTCCG 58.622 47.826 8.36 0.00 44.23 4.63
552 553 4.412528 AGGTTAAATGGATGTACTCCCTCC 59.587 45.833 8.36 3.94 44.23 4.30
553 554 5.104485 ACAGGTTAAATGGATGTACTCCCTC 60.104 44.000 8.36 0.00 44.23 4.30
554 555 4.788617 ACAGGTTAAATGGATGTACTCCCT 59.211 41.667 8.36 0.00 44.23 4.20
555 556 5.112129 ACAGGTTAAATGGATGTACTCCC 57.888 43.478 8.36 3.66 44.23 4.30
556 557 6.935208 GGATACAGGTTAAATGGATGTACTCC 59.065 42.308 0.00 0.00 45.19 3.85
557 558 7.736893 AGGATACAGGTTAAATGGATGTACTC 58.263 38.462 0.00 0.00 41.41 2.59
558 559 7.691993 AGGATACAGGTTAAATGGATGTACT 57.308 36.000 0.00 0.00 41.41 2.73
559 560 9.841295 TTTAGGATACAGGTTAAATGGATGTAC 57.159 33.333 0.00 0.00 41.41 2.90
561 562 9.936329 AATTTAGGATACAGGTTAAATGGATGT 57.064 29.630 0.00 0.00 41.41 3.06
576 577 7.817418 TCCTTACAATGCCAATTTAGGATAC 57.183 36.000 0.00 0.00 0.00 2.24
609 610 3.278367 TCGTACCTGCAGTATTATCGC 57.722 47.619 13.81 0.00 32.28 4.58
644 645 4.058124 TCTAGAATTTTCGCATCCGATGG 58.942 43.478 10.41 1.10 43.97 3.51
691 1407 2.332063 ATAACCGTCTGCTTCATGGG 57.668 50.000 0.00 0.00 0.00 4.00
694 1410 3.243434 CGACCTATAACCGTCTGCTTCAT 60.243 47.826 0.00 0.00 0.00 2.57
698 1414 2.048444 TCGACCTATAACCGTCTGCT 57.952 50.000 0.00 0.00 0.00 4.24
707 1423 2.094700 GCATGCCTCGATCGACCTATAA 60.095 50.000 15.15 0.00 0.00 0.98
714 1430 1.066422 GTCTGCATGCCTCGATCGA 59.934 57.895 18.32 18.32 0.00 3.59
875 1604 1.153168 TGCTTCTATTGGCCGGAGC 60.153 57.895 5.05 2.38 38.76 4.70
876 1605 1.154205 CGTGCTTCTATTGGCCGGAG 61.154 60.000 5.05 0.00 0.00 4.63
879 1608 2.823829 GCCGTGCTTCTATTGGCCG 61.824 63.158 0.00 0.00 39.83 6.13
1005 1734 8.379902 CAAATGTGTTTTAACTCCTGTGTTTTC 58.620 33.333 0.00 0.00 0.00 2.29
1072 1801 2.044946 GGCCGCTGAATGAACCCT 60.045 61.111 0.00 0.00 0.00 4.34
1075 1804 1.022451 TTACCGGCCGCTGAATGAAC 61.022 55.000 22.85 0.00 0.00 3.18
1234 1963 8.503458 TTTGCCCCAAATCATAAACATAAATG 57.497 30.769 0.00 0.00 0.00 2.32
1289 2020 6.262601 TCAAACAGAAACCTGTCGAAATTTC 58.737 36.000 8.20 8.20 43.60 2.17
1306 2037 6.291385 GCGCAAAATACTCAAATTCAAACAG 58.709 36.000 0.30 0.00 0.00 3.16
1351 2087 1.206578 CGCGTCGCCAAACATTCTT 59.793 52.632 12.44 0.00 0.00 2.52
1785 2521 3.399330 GTCGGAAACCTCATCTTGAACA 58.601 45.455 0.00 0.00 0.00 3.18
1786 2522 2.742589 GGTCGGAAACCTCATCTTGAAC 59.257 50.000 0.00 0.00 45.45 3.18
1810 2546 2.934553 GGTGTTTCTAATCCAGTACGCC 59.065 50.000 0.00 0.00 35.21 5.68
1979 2720 4.142004 CCAGCGGTAACTAATCCACTTACT 60.142 45.833 0.00 0.00 0.00 2.24
2058 2805 0.543277 ATCGCCTCAAGCCTCATGAA 59.457 50.000 0.00 0.00 38.78 2.57
2067 2814 4.183865 TGATTTGAGTACATCGCCTCAAG 58.816 43.478 0.00 0.00 45.53 3.02
2092 2842 6.149973 CGATCCGACCCATTTACTATACTGTA 59.850 42.308 0.00 0.00 0.00 2.74
2093 2843 5.048224 CGATCCGACCCATTTACTATACTGT 60.048 44.000 0.00 0.00 0.00 3.55
2094 2844 5.399858 CGATCCGACCCATTTACTATACTG 58.600 45.833 0.00 0.00 0.00 2.74
2095 2845 4.461781 CCGATCCGACCCATTTACTATACT 59.538 45.833 0.00 0.00 0.00 2.12
2096 2846 4.219288 ACCGATCCGACCCATTTACTATAC 59.781 45.833 0.00 0.00 0.00 1.47
2205 2955 4.070009 GTCCAAGAAAAGTCCCGTACAAT 58.930 43.478 0.00 0.00 0.00 2.71
2218 2968 4.532126 TGATTCTAGCTCTGGTCCAAGAAA 59.468 41.667 6.97 0.00 0.00 2.52
2322 3076 1.204146 AGTGGGTGGCGTCAGATTAT 58.796 50.000 0.00 0.00 0.00 1.28
2323 3077 0.981183 AAGTGGGTGGCGTCAGATTA 59.019 50.000 0.00 0.00 0.00 1.75
2333 3293 0.525761 CGGCACAAATAAGTGGGTGG 59.474 55.000 0.00 0.00 39.87 4.61
2351 3311 5.124297 TGGGTCCGTGATATACATACATACG 59.876 44.000 0.00 0.00 0.00 3.06
2377 3340 9.928618 TCCTTGGATACCATACATAATTTTTCA 57.071 29.630 0.00 0.00 31.53 2.69
2385 3348 9.387397 TGTCTTTATCCTTGGATACCATACATA 57.613 33.333 8.74 0.00 31.53 2.29
2388 3351 7.506114 TGTGTCTTTATCCTTGGATACCATAC 58.494 38.462 8.74 6.36 31.53 2.39
2391 3354 6.356556 CATGTGTCTTTATCCTTGGATACCA 58.643 40.000 8.74 0.00 0.00 3.25
2392 3355 5.765182 CCATGTGTCTTTATCCTTGGATACC 59.235 44.000 8.74 0.00 0.00 2.73
2393 3356 6.357367 ACCATGTGTCTTTATCCTTGGATAC 58.643 40.000 8.74 1.76 0.00 2.24
2394 3357 6.575244 ACCATGTGTCTTTATCCTTGGATA 57.425 37.500 5.33 5.33 0.00 2.59
2396 3359 4.927267 ACCATGTGTCTTTATCCTTGGA 57.073 40.909 0.00 0.00 0.00 3.53
2398 3361 5.243730 ACCAAACCATGTGTCTTTATCCTTG 59.756 40.000 0.00 0.00 0.00 3.61
2400 3363 4.998051 ACCAAACCATGTGTCTTTATCCT 58.002 39.130 0.00 0.00 0.00 3.24
2402 3365 5.163854 CGAGACCAAACCATGTGTCTTTATC 60.164 44.000 0.00 0.00 38.72 1.75
2403 3366 4.695455 CGAGACCAAACCATGTGTCTTTAT 59.305 41.667 0.00 0.00 38.72 1.40
2405 3368 2.878406 CGAGACCAAACCATGTGTCTTT 59.122 45.455 0.00 0.00 38.72 2.52
2406 3369 2.158813 ACGAGACCAAACCATGTGTCTT 60.159 45.455 0.00 0.00 38.72 3.01
2407 3370 1.416401 ACGAGACCAAACCATGTGTCT 59.584 47.619 0.00 0.00 40.23 3.41
2408 3371 1.531149 CACGAGACCAAACCATGTGTC 59.469 52.381 0.00 0.00 32.53 3.67
2409 3372 1.593196 CACGAGACCAAACCATGTGT 58.407 50.000 0.00 0.00 0.00 3.72
2410 3373 0.238289 GCACGAGACCAAACCATGTG 59.762 55.000 0.00 0.00 0.00 3.21
2412 3375 0.950836 TTGCACGAGACCAAACCATG 59.049 50.000 0.00 0.00 0.00 3.66
2413 3376 1.238439 CTTGCACGAGACCAAACCAT 58.762 50.000 0.00 0.00 0.00 3.55
2414 3377 1.444119 GCTTGCACGAGACCAAACCA 61.444 55.000 0.00 0.00 0.00 3.67
2416 3379 0.593128 ATGCTTGCACGAGACCAAAC 59.407 50.000 0.00 0.00 0.00 2.93
2417 3380 0.874390 GATGCTTGCACGAGACCAAA 59.126 50.000 0.00 0.00 0.00 3.28
2418 3381 0.035317 AGATGCTTGCACGAGACCAA 59.965 50.000 0.00 0.00 0.00 3.67
2419 3382 0.671472 CAGATGCTTGCACGAGACCA 60.671 55.000 0.00 0.00 0.00 4.02
2420 3383 1.975363 GCAGATGCTTGCACGAGACC 61.975 60.000 0.00 0.00 43.53 3.85
2422 3385 2.096442 CGCAGATGCTTGCACGAGA 61.096 57.895 2.95 0.00 44.28 4.04
2423 3386 1.426816 ATCGCAGATGCTTGCACGAG 61.427 55.000 10.70 0.00 45.12 4.18
2424 3387 1.423721 GATCGCAGATGCTTGCACGA 61.424 55.000 8.12 8.12 45.12 4.35
2425 3388 1.011463 GATCGCAGATGCTTGCACG 60.011 57.895 2.95 0.00 45.12 5.34
2426 3389 0.661552 ATGATCGCAGATGCTTGCAC 59.338 50.000 2.95 0.00 45.12 4.57
2427 3390 1.332686 GAATGATCGCAGATGCTTGCA 59.667 47.619 2.95 0.00 45.12 4.08
2428 3391 1.332686 TGAATGATCGCAGATGCTTGC 59.667 47.619 2.95 0.00 45.12 4.01
2429 3392 2.612672 ACTGAATGATCGCAGATGCTTG 59.387 45.455 14.58 0.00 45.12 4.01
2430 3393 2.612672 CACTGAATGATCGCAGATGCTT 59.387 45.455 14.58 0.00 45.12 3.91
2431 3394 2.210961 CACTGAATGATCGCAGATGCT 58.789 47.619 14.58 0.00 45.12 3.79
2432 3395 1.263484 CCACTGAATGATCGCAGATGC 59.737 52.381 14.58 0.00 45.12 3.91
2433 3396 2.558378 ACCACTGAATGATCGCAGATG 58.442 47.619 14.58 9.71 45.12 2.90
2434 3397 2.996249 ACCACTGAATGATCGCAGAT 57.004 45.000 14.58 0.00 45.12 2.90
2435 3398 2.760650 AGTACCACTGAATGATCGCAGA 59.239 45.455 14.58 0.00 45.75 4.26
2436 3399 3.170791 AGTACCACTGAATGATCGCAG 57.829 47.619 8.09 8.09 38.10 5.18
2437 3400 3.521560 GAAGTACCACTGAATGATCGCA 58.478 45.455 0.00 0.00 0.00 5.10
2438 3401 2.866762 GGAAGTACCACTGAATGATCGC 59.133 50.000 0.00 0.00 38.79 4.58
2439 3402 4.363999 GAGGAAGTACCACTGAATGATCG 58.636 47.826 0.00 0.00 42.04 3.69
2440 3403 4.162320 TGGAGGAAGTACCACTGAATGATC 59.838 45.833 0.00 0.00 42.04 2.92
2441 3404 4.104086 TGGAGGAAGTACCACTGAATGAT 58.896 43.478 0.00 0.00 42.04 2.45
2442 3405 3.516586 TGGAGGAAGTACCACTGAATGA 58.483 45.455 0.00 0.00 42.04 2.57
2443 3406 3.981071 TGGAGGAAGTACCACTGAATG 57.019 47.619 0.00 0.00 42.04 2.67
2444 3407 3.456277 GGATGGAGGAAGTACCACTGAAT 59.544 47.826 0.00 0.00 42.04 2.57
2445 3408 2.838202 GGATGGAGGAAGTACCACTGAA 59.162 50.000 0.00 0.00 42.04 3.02
2446 3409 2.467880 GGATGGAGGAAGTACCACTGA 58.532 52.381 0.00 0.00 42.04 3.41
2447 3410 1.486726 GGGATGGAGGAAGTACCACTG 59.513 57.143 0.00 0.00 42.04 3.66
2448 3411 1.080498 TGGGATGGAGGAAGTACCACT 59.920 52.381 0.00 0.00 42.04 4.00
2449 3412 1.580059 TGGGATGGAGGAAGTACCAC 58.420 55.000 0.00 0.00 42.04 4.16
2450 3413 2.587060 ATGGGATGGAGGAAGTACCA 57.413 50.000 0.00 0.00 42.04 3.25
2451 3414 4.040584 GTCTTATGGGATGGAGGAAGTACC 59.959 50.000 0.00 0.00 39.35 3.34
2452 3415 4.262079 CGTCTTATGGGATGGAGGAAGTAC 60.262 50.000 0.00 0.00 0.00 2.73
2453 3416 3.895656 CGTCTTATGGGATGGAGGAAGTA 59.104 47.826 0.00 0.00 0.00 2.24
2454 3417 2.700897 CGTCTTATGGGATGGAGGAAGT 59.299 50.000 0.00 0.00 0.00 3.01
2455 3418 2.037772 CCGTCTTATGGGATGGAGGAAG 59.962 54.545 0.00 0.00 43.16 3.46
2456 3419 2.047061 CCGTCTTATGGGATGGAGGAA 58.953 52.381 0.00 0.00 43.16 3.36
2457 3420 1.219469 TCCGTCTTATGGGATGGAGGA 59.781 52.381 6.60 0.00 43.90 3.71
2458 3421 1.717032 TCCGTCTTATGGGATGGAGG 58.283 55.000 6.60 0.00 43.90 4.30
2460 3423 1.717032 CCTCCGTCTTATGGGATGGA 58.283 55.000 9.39 9.39 45.81 3.41
2461 3424 0.687354 CCCTCCGTCTTATGGGATGG 59.313 60.000 0.00 0.00 42.11 3.51
2462 3425 1.620819 CTCCCTCCGTCTTATGGGATG 59.379 57.143 0.00 0.00 46.42 3.51
2463 3426 1.220750 ACTCCCTCCGTCTTATGGGAT 59.779 52.381 0.00 0.00 46.42 3.85
2464 3427 0.635009 ACTCCCTCCGTCTTATGGGA 59.365 55.000 0.00 0.00 45.58 4.37
2465 3428 1.962100 GTACTCCCTCCGTCTTATGGG 59.038 57.143 0.00 0.00 40.95 4.00
2466 3429 2.662866 TGTACTCCCTCCGTCTTATGG 58.337 52.381 0.00 0.00 0.00 2.74
2467 3430 4.939052 ATTGTACTCCCTCCGTCTTATG 57.061 45.455 0.00 0.00 0.00 1.90
2468 3431 8.337739 AGATATATTGTACTCCCTCCGTCTTAT 58.662 37.037 0.00 0.00 0.00 1.73
2469 3432 7.610692 CAGATATATTGTACTCCCTCCGTCTTA 59.389 40.741 0.00 0.00 0.00 2.10
2470 3433 6.434652 CAGATATATTGTACTCCCTCCGTCTT 59.565 42.308 0.00 0.00 0.00 3.01
2471 3434 5.946972 CAGATATATTGTACTCCCTCCGTCT 59.053 44.000 0.00 0.00 0.00 4.18
2472 3435 5.944599 TCAGATATATTGTACTCCCTCCGTC 59.055 44.000 0.00 0.00 0.00 4.79
2473 3436 5.888901 TCAGATATATTGTACTCCCTCCGT 58.111 41.667 0.00 0.00 0.00 4.69
2474 3437 6.434652 ACTTCAGATATATTGTACTCCCTCCG 59.565 42.308 0.00 0.00 0.00 4.63
2475 3438 7.784470 ACTTCAGATATATTGTACTCCCTCC 57.216 40.000 0.00 0.00 0.00 4.30
2476 3439 9.523168 AGTACTTCAGATATATTGTACTCCCTC 57.477 37.037 0.00 0.00 36.80 4.30
2477 3440 9.884814 AAGTACTTCAGATATATTGTACTCCCT 57.115 33.333 1.12 0.00 39.40 4.20
2478 3441 9.915629 CAAGTACTTCAGATATATTGTACTCCC 57.084 37.037 4.77 0.00 39.40 4.30
2479 3442 9.413048 GCAAGTACTTCAGATATATTGTACTCC 57.587 37.037 4.77 0.00 39.40 3.85
2480 3443 9.967346 TGCAAGTACTTCAGATATATTGTACTC 57.033 33.333 4.77 0.00 39.40 2.59
2566 3532 1.518056 CTCGGCACCACTGCACAATT 61.518 55.000 0.00 0.00 46.28 2.32
2657 3623 2.803956 TCGTATGTCTCTGGGTTCAGT 58.196 47.619 0.00 0.00 41.59 3.41
2705 3671 3.958147 ACATGTACTCGATGTGGATACCA 59.042 43.478 0.00 0.00 32.68 3.25
2795 3761 2.429058 CTGCAGCACTCCTGGTGT 59.571 61.111 0.00 0.00 46.01 4.16
2903 3869 0.610232 GAACAACAGGGATGCTGGCT 60.610 55.000 0.00 0.00 0.00 4.75
2924 3890 4.594491 TGGTGCATGGAGTATCATCATACT 59.406 41.667 0.00 0.00 46.84 2.12
2955 3921 4.035558 TGATCGATACTGAAAAATGCAGGC 59.964 41.667 0.00 0.00 37.69 4.85
2988 3954 9.571810 GTTCAAGACACAATATCAAAATGCATA 57.428 29.630 0.00 0.00 0.00 3.14
3026 3992 8.408043 AAAGTTCAAATGATCATTAGGTGTCA 57.592 30.769 21.00 5.51 0.00 3.58
3048 4014 4.501400 GGATCAACCTGGACCAACAAAAAG 60.501 45.833 0.00 0.00 35.41 2.27
3214 4180 3.521531 TCCATATTACACCTCTGCAACCA 59.478 43.478 0.00 0.00 0.00 3.67
3233 4199 6.832900 TCTGAAATTACCATATTGCATGTCCA 59.167 34.615 0.00 0.00 0.00 4.02
3281 4247 5.695851 ACCATAAAAGAGCTCAACACAAG 57.304 39.130 17.77 2.06 0.00 3.16
3282 4248 5.472137 GGTACCATAAAAGAGCTCAACACAA 59.528 40.000 17.77 0.00 0.00 3.33
3283 4249 5.001232 GGTACCATAAAAGAGCTCAACACA 58.999 41.667 17.77 0.00 0.00 3.72
3284 4250 5.547181 GGTACCATAAAAGAGCTCAACAC 57.453 43.478 17.77 0.37 0.00 3.32
3986 5100 1.677966 CCACGACCTCCTCCTCGAA 60.678 63.158 0.00 0.00 33.96 3.71
4384 5500 1.803334 TGTCGATGTTACCCTTGTGC 58.197 50.000 0.00 0.00 0.00 4.57
4661 5788 2.585869 GCACGACACGACACACCAG 61.586 63.158 0.00 0.00 0.00 4.00
4795 5922 0.322277 TCGTCGGGAAGCTCTGTAGT 60.322 55.000 0.00 0.00 0.00 2.73
4971 6098 6.430308 CCTCTCTCGCTACCACTACATAATAA 59.570 42.308 0.00 0.00 0.00 1.40
4989 6116 2.311463 TCCGTTGATCCATCCTCTCTC 58.689 52.381 0.00 0.00 0.00 3.20
5023 6158 3.302347 CTGCGTCCCCACACTCCTC 62.302 68.421 0.00 0.00 0.00 3.71
5165 6300 5.749109 CCACGAGTATATTGTCCAAACTCTC 59.251 44.000 0.00 0.00 35.51 3.20
5180 6315 1.471684 GACCGAGTGAACCACGAGTAT 59.528 52.381 0.00 0.00 39.64 2.12
5185 6335 0.939577 CTGTGACCGAGTGAACCACG 60.940 60.000 0.00 0.00 39.64 4.94
5188 6338 1.668151 GCCTGTGACCGAGTGAACC 60.668 63.158 0.00 0.00 0.00 3.62
5198 6348 2.125512 CGGGTAGCTGCCTGTGAC 60.126 66.667 20.81 2.76 0.00 3.67
5199 6349 1.476845 TTTCGGGTAGCTGCCTGTGA 61.477 55.000 26.72 16.30 36.33 3.58
5200 6350 0.605319 TTTTCGGGTAGCTGCCTGTG 60.605 55.000 26.72 14.38 36.33 3.66
5201 6351 0.109723 TTTTTCGGGTAGCTGCCTGT 59.890 50.000 26.72 0.00 36.33 4.00
5204 6354 1.530323 TTCTTTTTCGGGTAGCTGCC 58.470 50.000 13.24 13.24 0.00 4.85
5205 6355 3.636282 TTTTCTTTTTCGGGTAGCTGC 57.364 42.857 0.00 0.00 0.00 5.25
5228 6381 5.187772 TGATAACTGACCTGTGACTGCTATT 59.812 40.000 0.00 0.00 0.00 1.73
5230 6383 4.082190 GTGATAACTGACCTGTGACTGCTA 60.082 45.833 0.00 0.00 0.00 3.49
5231 6384 2.899900 TGATAACTGACCTGTGACTGCT 59.100 45.455 0.00 0.00 0.00 4.24
5232 6385 2.996621 GTGATAACTGACCTGTGACTGC 59.003 50.000 0.00 0.00 0.00 4.40
5233 6386 4.257267 TGTGATAACTGACCTGTGACTG 57.743 45.455 0.00 0.00 0.00 3.51
5234 6387 5.247110 AGAATGTGATAACTGACCTGTGACT 59.753 40.000 0.00 0.00 0.00 3.41
5235 6388 5.349817 CAGAATGTGATAACTGACCTGTGAC 59.650 44.000 0.00 0.00 32.90 3.67
5236 6389 5.482006 CAGAATGTGATAACTGACCTGTGA 58.518 41.667 0.00 0.00 32.90 3.58
5240 6393 4.836825 CACCAGAATGTGATAACTGACCT 58.163 43.478 0.00 0.00 38.55 3.85
5241 6394 3.375299 GCACCAGAATGTGATAACTGACC 59.625 47.826 0.00 0.00 38.55 4.02
5242 6395 3.375299 GGCACCAGAATGTGATAACTGAC 59.625 47.826 0.00 0.00 38.55 3.51
5243 6396 3.609853 GGCACCAGAATGTGATAACTGA 58.390 45.455 0.00 0.00 38.55 3.41
5284 6437 4.583907 TCAACAAATTCAGCATCAACCAGA 59.416 37.500 0.00 0.00 0.00 3.86
5290 6452 4.522722 TGCATCAACAAATTCAGCATCA 57.477 36.364 0.00 0.00 0.00 3.07
5322 6484 2.214376 AGAATCCGGCCACATTTCAA 57.786 45.000 2.24 0.00 0.00 2.69
5324 6486 2.872858 GACTAGAATCCGGCCACATTTC 59.127 50.000 2.24 0.00 0.00 2.17
5360 6525 9.159364 CTCTGAAATTTGAGAACATGAGTGATA 57.841 33.333 8.73 0.00 32.44 2.15
5366 6531 6.441274 GCAACTCTGAAATTTGAGAACATGA 58.559 36.000 8.73 0.00 34.65 3.07
5437 6606 3.599730 TGTGAGAGGTGATGACATGTC 57.400 47.619 19.27 19.27 0.00 3.06
5462 6631 2.690497 TGCAAAACAATGAGACCCGAAA 59.310 40.909 0.00 0.00 0.00 3.46
5468 6637 4.044426 GTGGACTTGCAAAACAATGAGAC 58.956 43.478 0.00 0.00 37.72 3.36
5484 6653 3.307782 CGTTTTGTAGTTGTTCGTGGACT 59.692 43.478 0.00 0.00 0.00 3.85
5509 6678 4.074970 GAGGGCATTTGAAGTTCTTCAGA 58.925 43.478 13.69 10.82 31.87 3.27
5547 6717 1.605710 TGCTCAAAGACAAGAAGCAGC 59.394 47.619 0.00 0.00 0.00 5.25
5566 6736 0.725686 CGAGATGGCAGCTCACTTTG 59.274 55.000 29.78 11.45 32.67 2.77
5580 6750 3.119101 ACGGTTAGAAAGCATGTCGAGAT 60.119 43.478 0.00 0.00 0.00 2.75
5590 6760 5.419760 AAGACAAGAAACGGTTAGAAAGC 57.580 39.130 0.00 0.00 0.00 3.51
5644 6815 2.093306 TACCAGCACCATCTCAAACG 57.907 50.000 0.00 0.00 0.00 3.60
5688 6859 2.099263 TGAGCTACTATCTGGTTGACGC 59.901 50.000 0.00 0.00 0.00 5.19
5755 6926 0.972134 TGTGAGGCTGACTGAAGGAG 59.028 55.000 5.53 0.00 0.00 3.69
5780 6951 1.819928 ATGTGCTGCAACGATAACCA 58.180 45.000 2.77 0.00 0.00 3.67
5801 6972 0.321671 CCGGGTCTCACAATGACACT 59.678 55.000 0.00 0.00 35.83 3.55
5802 6973 0.673644 CCCGGGTCTCACAATGACAC 60.674 60.000 14.18 0.00 36.26 3.67
5845 7017 3.504906 CAGTTGCATCACAGGATCTTTGT 59.495 43.478 0.00 0.00 0.00 2.83
5887 7062 6.321181 GGCAATATCAGGGTCATGTTAAGAAA 59.679 38.462 0.00 0.00 0.00 2.52
5926 7101 4.970860 TTGGAAATGAAAGAATTGCCCA 57.029 36.364 0.00 0.00 34.62 5.36
5956 7131 4.015084 CAGGTTTGCTTGGATCTCTTGAT 58.985 43.478 0.00 0.00 35.26 2.57
6041 7244 1.391157 GGTCAGGTTTGCAACTGCCA 61.391 55.000 17.69 1.84 41.18 4.92
6101 7304 2.264480 CCGCTGATTCGTGGGACA 59.736 61.111 1.64 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.