Multiple sequence alignment - TraesCS2A01G225100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G225100 chr2A 100.000 7743 0 0 1 7743 227836458 227828716 0.000000e+00 14299.0
1 TraesCS2A01G225100 chr2A 94.828 1276 46 7 4016 5271 345483612 345484887 0.000000e+00 1973.0
2 TraesCS2A01G225100 chr2A 82.743 226 32 4 2952 3171 71343228 71343004 2.200000e-45 195.0
3 TraesCS2A01G225100 chr2A 80.916 131 19 6 3703 3830 545801772 545801899 1.780000e-16 99.0
4 TraesCS2A01G225100 chr2B 96.309 2682 74 8 682 3349 379104804 379102134 0.000000e+00 4381.0
5 TraesCS2A01G225100 chr2B 96.362 1017 23 5 5962 6976 379096086 379095082 0.000000e+00 1661.0
6 TraesCS2A01G225100 chr2B 94.488 762 31 6 6992 7743 379095099 379094339 0.000000e+00 1164.0
7 TraesCS2A01G225100 chr2B 95.076 528 24 2 5385 5910 379101594 379101067 0.000000e+00 830.0
8 TraesCS2A01G225100 chr2B 90.763 498 32 1 1848 2345 44910154 44910637 0.000000e+00 652.0
9 TraesCS2A01G225100 chr2B 84.603 617 83 12 9 618 379120135 379119524 3.090000e-168 603.0
10 TraesCS2A01G225100 chr2B 97.444 313 7 1 3394 3706 379101971 379101660 4.110000e-147 532.0
11 TraesCS2A01G225100 chr2B 89.418 189 16 1 1680 1864 44909584 44909772 1.300000e-57 235.0
12 TraesCS2A01G225100 chr2B 88.344 163 15 4 3721 3879 153528871 153529033 7.930000e-45 193.0
13 TraesCS2A01G225100 chr2B 96.552 87 3 0 3930 4016 379101668 379101582 2.250000e-30 145.0
14 TraesCS2A01G225100 chr2B 100.000 41 0 0 3373 3413 379102020 379101980 8.330000e-10 76.8
15 TraesCS2A01G225100 chr2D 95.691 2669 91 12 691 3349 202087862 202085208 0.000000e+00 4270.0
16 TraesCS2A01G225100 chr2D 92.207 2143 88 37 5385 7495 202084722 202082627 0.000000e+00 2959.0
17 TraesCS2A01G225100 chr2D 94.792 960 38 4 4016 4963 618381819 618380860 0.000000e+00 1485.0
18 TraesCS2A01G225100 chr2D 97.710 262 5 1 3398 3659 202085061 202084801 4.260000e-122 449.0
19 TraesCS2A01G225100 chr2D 81.148 488 63 18 22 496 202088342 202087871 1.590000e-96 364.0
20 TraesCS2A01G225100 chr2D 96.552 87 3 0 3930 4016 202084796 202084710 2.250000e-30 145.0
21 TraesCS2A01G225100 chr2D 87.288 118 9 3 7630 7743 161986345 161986460 6.310000e-26 130.0
22 TraesCS2A01G225100 chr2D 81.366 161 20 5 3711 3862 435573769 435573610 1.060000e-23 122.0
23 TraesCS2A01G225100 chr2D 100.000 38 0 0 3373 3410 202085112 202085075 3.880000e-08 71.3
24 TraesCS2A01G225100 chr3A 95.659 1359 46 6 4016 5361 41951301 41949943 0.000000e+00 2170.0
25 TraesCS2A01G225100 chr5B 95.011 1343 59 7 4020 5360 405525586 405524250 0.000000e+00 2102.0
26 TraesCS2A01G225100 chr1D 93.979 1362 67 4 4016 5363 110051774 110050414 0.000000e+00 2047.0
27 TraesCS2A01G225100 chr1D 88.136 177 14 5 499 671 51831756 51831583 3.660000e-48 204.0
28 TraesCS2A01G225100 chr3B 93.608 1361 74 6 4016 5365 436516572 436515214 0.000000e+00 2019.0
29 TraesCS2A01G225100 chr3B 93.451 1359 75 3 4016 5361 43838484 43839841 0.000000e+00 2004.0
30 TraesCS2A01G225100 chr3B 91.758 364 30 0 1982 2345 244793045 244792682 2.490000e-139 507.0
31 TraesCS2A01G225100 chr3B 87.222 180 16 2 3707 3879 610147083 610146904 1.700000e-46 198.0
32 TraesCS2A01G225100 chr1B 91.985 1360 91 11 4016 5361 661570264 661568909 0.000000e+00 1892.0
33 TraesCS2A01G225100 chr1B 92.793 666 48 0 1680 2345 66950269 66950934 0.000000e+00 965.0
34 TraesCS2A01G225100 chr1B 86.339 183 16 6 496 672 633717172 633717351 2.850000e-44 191.0
35 TraesCS2A01G225100 chr4B 91.912 1360 92 11 4016 5361 54040763 54039408 0.000000e+00 1886.0
36 TraesCS2A01G225100 chr4B 82.629 213 36 1 2994 3205 495595241 495595453 3.690000e-43 187.0
37 TraesCS2A01G225100 chr6B 91.838 1360 93 11 4016 5361 337939239 337940594 0.000000e+00 1881.0
38 TraesCS2A01G225100 chr7A 91.697 1361 95 11 4015 5361 736543281 736541925 0.000000e+00 1871.0
39 TraesCS2A01G225100 chr7A 84.733 262 26 7 2955 3203 148483806 148483546 4.640000e-62 250.0
40 TraesCS2A01G225100 chr7A 87.097 186 15 5 3703 3879 11058515 11058330 1.320000e-47 202.0
41 TraesCS2A01G225100 chr7A 87.079 178 15 5 499 671 537841205 537841031 2.200000e-45 195.0
42 TraesCS2A01G225100 chrUn 91.394 1255 90 11 4121 5361 420017104 420015854 0.000000e+00 1703.0
43 TraesCS2A01G225100 chr1A 92.494 1199 74 5 4016 5202 355589241 355590435 0.000000e+00 1701.0
44 TraesCS2A01G225100 chr1A 86.264 182 16 6 496 671 554482212 554482390 1.030000e-43 189.0
45 TraesCS2A01G225100 chr7B 92.342 666 51 0 1680 2345 244283613 244282948 0.000000e+00 948.0
46 TraesCS2A01G225100 chr7B 83.955 268 28 5 2955 3208 109928748 109928482 7.760000e-60 243.0
47 TraesCS2A01G225100 chr7B 86.207 87 9 3 3706 3790 544047973 544047888 2.980000e-14 91.6
48 TraesCS2A01G225100 chr7D 83.955 268 29 5 2955 3208 147003614 147003347 2.160000e-60 244.0
49 TraesCS2A01G225100 chr4A 83.203 256 40 3 2952 3205 58882461 58882715 1.680000e-56 231.0
50 TraesCS2A01G225100 chr5D 86.740 181 16 5 496 671 503313703 503313880 2.200000e-45 195.0
51 TraesCS2A01G225100 chr5D 86.667 180 15 6 499 672 6253072 6252896 2.850000e-44 191.0
52 TraesCS2A01G225100 chr5D 86.592 179 15 5 499 671 299972304 299972129 1.030000e-43 189.0
53 TraesCS2A01G225100 chr5D 86.264 182 16 6 496 671 503339641 503339819 1.030000e-43 189.0
54 TraesCS2A01G225100 chr5A 81.221 213 35 5 2994 3204 548672582 548672373 4.810000e-37 167.0
55 TraesCS2A01G225100 chr4D 88.636 132 8 3 7618 7743 282306726 282306596 3.740000e-33 154.0
56 TraesCS2A01G225100 chr4D 81.212 165 19 10 3707 3862 35666394 35666555 1.060000e-23 122.0
57 TraesCS2A01G225100 chr6D 82.927 164 19 7 3707 3862 62274779 62274617 1.050000e-28 139.0
58 TraesCS2A01G225100 chr6D 78.151 119 20 3 3705 3817 396812862 396812980 3.880000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G225100 chr2A 227828716 227836458 7742 True 14299.000000 14299 100.000000 1 7743 1 chr2A.!!$R2 7742
1 TraesCS2A01G225100 chr2A 345483612 345484887 1275 False 1973.000000 1973 94.828000 4016 5271 1 chr2A.!!$F1 1255
2 TraesCS2A01G225100 chr2B 379094339 379096086 1747 True 1412.500000 1661 95.425000 5962 7743 2 chr2B.!!$R2 1781
3 TraesCS2A01G225100 chr2B 379101067 379104804 3737 True 1192.960000 4381 97.076200 682 5910 5 chr2B.!!$R3 5228
4 TraesCS2A01G225100 chr2B 379119524 379120135 611 True 603.000000 603 84.603000 9 618 1 chr2B.!!$R1 609
5 TraesCS2A01G225100 chr2B 44909584 44910637 1053 False 443.500000 652 90.090500 1680 2345 2 chr2B.!!$F2 665
6 TraesCS2A01G225100 chr2D 618380860 618381819 959 True 1485.000000 1485 94.792000 4016 4963 1 chr2D.!!$R2 947
7 TraesCS2A01G225100 chr2D 202082627 202088342 5715 True 1376.383333 4270 93.884667 22 7495 6 chr2D.!!$R3 7473
8 TraesCS2A01G225100 chr3A 41949943 41951301 1358 True 2170.000000 2170 95.659000 4016 5361 1 chr3A.!!$R1 1345
9 TraesCS2A01G225100 chr5B 405524250 405525586 1336 True 2102.000000 2102 95.011000 4020 5360 1 chr5B.!!$R1 1340
10 TraesCS2A01G225100 chr1D 110050414 110051774 1360 True 2047.000000 2047 93.979000 4016 5363 1 chr1D.!!$R2 1347
11 TraesCS2A01G225100 chr3B 436515214 436516572 1358 True 2019.000000 2019 93.608000 4016 5365 1 chr3B.!!$R2 1349
12 TraesCS2A01G225100 chr3B 43838484 43839841 1357 False 2004.000000 2004 93.451000 4016 5361 1 chr3B.!!$F1 1345
13 TraesCS2A01G225100 chr1B 661568909 661570264 1355 True 1892.000000 1892 91.985000 4016 5361 1 chr1B.!!$R1 1345
14 TraesCS2A01G225100 chr1B 66950269 66950934 665 False 965.000000 965 92.793000 1680 2345 1 chr1B.!!$F1 665
15 TraesCS2A01G225100 chr4B 54039408 54040763 1355 True 1886.000000 1886 91.912000 4016 5361 1 chr4B.!!$R1 1345
16 TraesCS2A01G225100 chr6B 337939239 337940594 1355 False 1881.000000 1881 91.838000 4016 5361 1 chr6B.!!$F1 1345
17 TraesCS2A01G225100 chr7A 736541925 736543281 1356 True 1871.000000 1871 91.697000 4015 5361 1 chr7A.!!$R4 1346
18 TraesCS2A01G225100 chrUn 420015854 420017104 1250 True 1703.000000 1703 91.394000 4121 5361 1 chrUn.!!$R1 1240
19 TraesCS2A01G225100 chr1A 355589241 355590435 1194 False 1701.000000 1701 92.494000 4016 5202 1 chr1A.!!$F1 1186
20 TraesCS2A01G225100 chr7B 244282948 244283613 665 True 948.000000 948 92.342000 1680 2345 1 chr7B.!!$R2 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 202 0.033504 ATGGGTAAGGTGCGCGATAG 59.966 55.000 12.10 0.0 0.00 2.08 F
1100 1121 0.250166 CCCCCGTTCGTCTCAAAGTT 60.250 55.000 0.00 0.0 0.00 2.66 F
1176 1197 1.470458 GCTCAGCTTAATTGCTTGGGC 60.470 52.381 0.00 0.0 41.98 5.36 F
2739 3169 0.733729 CAGGCAGCTGAAGAATGCTC 59.266 55.000 20.43 0.0 39.88 4.26 F
3882 4456 0.039346 TGATCGTACACGCAAACCGA 60.039 50.000 0.00 0.0 41.02 4.69 F
4009 4583 0.106521 GGGTTGTGCTTGTTTGGCAT 59.893 50.000 0.00 0.0 41.86 4.40 F
4013 4587 0.675083 TGTGCTTGTTTGGCATCCAG 59.325 50.000 0.00 0.0 41.86 3.86 F
4637 5229 1.076727 TGCTCGAGGAGAGGGTCAA 59.923 57.895 15.58 0.0 46.91 3.18 F
5668 6312 1.006086 TTTGTGATGCCGCGTATCTG 58.994 50.000 17.77 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1657 1678 1.468914 GGCGGCCTCTTCTTTAACTTG 59.531 52.381 12.87 0.00 0.00 3.16 R
2739 3169 3.786635 CAGACAGAAATACCCTTCTCCG 58.213 50.000 0.00 0.00 33.25 4.63 R
3015 3445 5.299279 ACCTTCATTCTTGTGAAACGAATGT 59.701 36.000 10.03 0.00 41.99 2.71 R
3915 4489 0.034089 AACAGTAGGCCTGGGCATTC 60.034 55.000 23.25 11.57 46.06 2.67 R
5373 6016 0.321919 GGATGCCAACTCACTGCAGA 60.322 55.000 23.35 0.00 38.58 4.26 R
5375 6018 0.607217 CTGGATGCCAACTCACTGCA 60.607 55.000 0.00 0.00 39.68 4.41 R
5376 6019 0.321919 TCTGGATGCCAACTCACTGC 60.322 55.000 0.00 0.00 30.80 4.40 R
5711 6355 0.882042 GCTCCACCACATGATAGCCG 60.882 60.000 0.00 0.00 33.35 5.52 R
6829 7492 0.174845 CGTGGAGATTCGGGTGCTTA 59.825 55.000 0.00 0.00 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.451150 TGATCCTGCACCGCCGTC 62.451 66.667 0.00 0.00 0.00 4.79
47 48 2.820787 GAGTCGGGATATCAAGATCCGT 59.179 50.000 14.48 0.25 45.67 4.69
57 58 3.417275 AAGATCCGTCTGCGAGCCG 62.417 63.158 0.00 0.00 41.33 5.52
69 70 4.699522 GAGCCGTGGACACACCCC 62.700 72.222 3.12 0.00 44.86 4.95
84 85 3.636231 CCCGTGCCTCACCTCCAA 61.636 66.667 0.00 0.00 0.00 3.53
86 87 2.738521 CGTGCCTCACCTCCAACG 60.739 66.667 0.00 0.00 0.00 4.10
87 88 2.426023 GTGCCTCACCTCCAACGT 59.574 61.111 0.00 0.00 0.00 3.99
88 89 1.961277 GTGCCTCACCTCCAACGTG 60.961 63.158 0.00 0.00 0.00 4.49
96 97 2.356313 CTCCAACGTGTCGCTGCT 60.356 61.111 0.00 0.00 0.00 4.24
119 120 2.506962 GGAACCACGACACCACCA 59.493 61.111 0.00 0.00 0.00 4.17
120 121 1.890510 GGAACCACGACACCACCAC 60.891 63.158 0.00 0.00 0.00 4.16
121 122 2.202960 AACCACGACACCACCACG 60.203 61.111 0.00 0.00 0.00 4.94
122 123 3.743534 AACCACGACACCACCACGG 62.744 63.158 0.00 0.00 42.50 4.94
147 148 1.152989 CTGCTCTTCTCCGCATGCTC 61.153 60.000 17.13 0.00 35.32 4.26
174 176 2.675423 CTCCGTCTCCCGTGACCA 60.675 66.667 0.00 0.00 33.70 4.02
190 192 3.506067 GTGACCAAACAGAATGGGTAAGG 59.494 47.826 0.00 0.00 43.62 2.69
191 193 3.139397 TGACCAAACAGAATGGGTAAGGT 59.861 43.478 0.00 0.00 43.62 3.50
193 195 2.231235 CCAAACAGAATGGGTAAGGTGC 59.769 50.000 0.00 0.00 43.62 5.01
194 196 1.821216 AACAGAATGGGTAAGGTGCG 58.179 50.000 0.00 0.00 43.62 5.34
195 197 0.676782 ACAGAATGGGTAAGGTGCGC 60.677 55.000 0.00 0.00 43.62 6.09
196 198 1.449601 AGAATGGGTAAGGTGCGCG 60.450 57.895 0.00 0.00 0.00 6.86
197 199 1.448893 GAATGGGTAAGGTGCGCGA 60.449 57.895 12.10 0.00 0.00 5.87
198 200 0.814010 GAATGGGTAAGGTGCGCGAT 60.814 55.000 12.10 0.00 0.00 4.58
200 202 0.033504 ATGGGTAAGGTGCGCGATAG 59.966 55.000 12.10 0.00 0.00 2.08
213 215 1.214062 CGATAGCTCCTCGATGGCC 59.786 63.158 12.02 0.00 38.38 5.36
217 219 2.298335 TAGCTCCTCGATGGCCTCCA 62.298 60.000 3.32 0.00 38.19 3.86
224 226 3.866582 GATGGCCTCCACCTCCCG 61.867 72.222 3.32 0.00 35.80 5.14
234 236 2.603776 ACCTCCCGTGGTGTCTCC 60.604 66.667 0.00 0.00 39.17 3.71
241 243 0.608130 CCGTGGTGTCTCCTCAATGA 59.392 55.000 0.00 0.00 37.07 2.57
251 264 1.759445 CTCCTCAATGACCTCATCCGT 59.241 52.381 0.00 0.00 35.10 4.69
257 270 1.403814 ATGACCTCATCCGTCGATGT 58.596 50.000 3.52 0.00 45.32 3.06
264 277 1.018752 CATCCGTCGATGTGGCAACA 61.019 55.000 0.00 0.00 40.97 3.33
286 299 7.944729 ACAAATTGAAGCAGAGTACCATTAT 57.055 32.000 0.00 0.00 0.00 1.28
318 331 1.818959 GAGTTGCCATGCTTGCCCAA 61.819 55.000 0.00 0.00 0.00 4.12
328 341 1.002134 CTTGCCCAAGACCGGTGAT 60.002 57.895 14.63 0.00 40.79 3.06
338 351 2.034066 CCGGTGATTGCAGGGTGT 59.966 61.111 0.00 0.00 0.00 4.16
339 352 2.334946 CCGGTGATTGCAGGGTGTG 61.335 63.158 0.00 0.00 0.00 3.82
352 365 3.936203 GTGTGCCGACCTGGTCCA 61.936 66.667 20.68 11.15 41.21 4.02
368 381 2.370445 CCAGAATCCGGTGGCCTCT 61.370 63.158 3.32 0.00 0.00 3.69
371 384 1.452108 GAATCCGGTGGCCTCTTGG 60.452 63.158 3.32 7.31 0.00 3.61
385 398 2.915659 TTGGCCTCGTCACCGACT 60.916 61.111 3.32 0.00 38.40 4.18
393 406 4.357947 GTCACCGACTGGCGCTCA 62.358 66.667 7.64 2.39 39.70 4.26
394 407 3.611674 TCACCGACTGGCGCTCAA 61.612 61.111 7.64 0.00 39.70 3.02
403 416 0.463295 CTGGCGCTCAATCCATCTGT 60.463 55.000 7.64 0.00 0.00 3.41
405 418 0.462581 GGCGCTCAATCCATCTGTGA 60.463 55.000 7.64 0.00 0.00 3.58
416 429 3.544684 TCCATCTGTGACATGTATTGCC 58.455 45.455 0.00 0.00 0.00 4.52
423 436 3.119291 GTGACATGTATTGCCGAGAGAG 58.881 50.000 0.00 0.00 0.00 3.20
424 437 3.023832 TGACATGTATTGCCGAGAGAGA 58.976 45.455 0.00 0.00 0.00 3.10
426 439 2.363680 ACATGTATTGCCGAGAGAGAGG 59.636 50.000 0.00 0.00 0.00 3.69
429 442 1.611491 GTATTGCCGAGAGAGAGGGAG 59.389 57.143 0.00 0.00 0.00 4.30
430 443 0.260230 ATTGCCGAGAGAGAGGGAGA 59.740 55.000 0.00 0.00 0.00 3.71
431 444 0.260230 TTGCCGAGAGAGAGGGAGAT 59.740 55.000 0.00 0.00 0.00 2.75
432 445 0.467106 TGCCGAGAGAGAGGGAGATG 60.467 60.000 0.00 0.00 0.00 2.90
433 446 1.178534 GCCGAGAGAGAGGGAGATGG 61.179 65.000 0.00 0.00 0.00 3.51
434 447 0.476338 CCGAGAGAGAGGGAGATGGA 59.524 60.000 0.00 0.00 0.00 3.41
440 453 1.782752 AGAGAGGGAGATGGAGAGAGG 59.217 57.143 0.00 0.00 0.00 3.69
452 465 2.038659 GGAGAGAGGGTGAGAGGAATG 58.961 57.143 0.00 0.00 0.00 2.67
466 479 2.780010 GAGGAATGGGAGGAGAATGGAA 59.220 50.000 0.00 0.00 0.00 3.53
473 487 1.472376 GGAGGAGAATGGAAGCGACAG 60.472 57.143 0.00 0.00 0.00 3.51
501 515 6.108097 GAAGGATAAGGTCATTCGTGTTTC 57.892 41.667 0.00 0.00 37.81 2.78
502 516 5.160607 AGGATAAGGTCATTCGTGTTTCA 57.839 39.130 0.00 0.00 0.00 2.69
503 517 4.935808 AGGATAAGGTCATTCGTGTTTCAC 59.064 41.667 0.00 0.00 0.00 3.18
504 518 4.094442 GGATAAGGTCATTCGTGTTTCACC 59.906 45.833 0.00 0.00 0.00 4.02
505 519 1.508632 AGGTCATTCGTGTTTCACCG 58.491 50.000 0.00 0.00 0.00 4.94
506 520 0.515564 GGTCATTCGTGTTTCACCGG 59.484 55.000 0.00 0.00 0.00 5.28
507 521 1.223187 GTCATTCGTGTTTCACCGGT 58.777 50.000 0.00 0.00 0.00 5.28
508 522 1.193874 GTCATTCGTGTTTCACCGGTC 59.806 52.381 2.59 0.00 0.00 4.79
509 523 1.202545 TCATTCGTGTTTCACCGGTCA 60.203 47.619 2.59 0.00 0.00 4.02
510 524 1.600013 CATTCGTGTTTCACCGGTCAA 59.400 47.619 2.59 0.00 0.00 3.18
511 525 1.735386 TTCGTGTTTCACCGGTCAAA 58.265 45.000 2.59 0.00 0.00 2.69
512 526 1.008329 TCGTGTTTCACCGGTCAAAC 58.992 50.000 25.40 25.40 33.78 2.93
513 527 0.727970 CGTGTTTCACCGGTCAAACA 59.272 50.000 29.99 29.99 39.61 2.83
514 528 1.130749 CGTGTTTCACCGGTCAAACAA 59.869 47.619 34.15 18.08 42.62 2.83
515 529 2.789779 CGTGTTTCACCGGTCAAACAAG 60.790 50.000 34.15 31.27 42.62 3.16
516 530 2.420722 GTGTTTCACCGGTCAAACAAGA 59.579 45.455 34.15 13.10 42.62 3.02
517 531 2.420722 TGTTTCACCGGTCAAACAAGAC 59.579 45.455 31.24 8.67 39.10 3.01
600 614 4.918810 AAAAGGGTGAGCAAAGTAAGTG 57.081 40.909 0.00 0.00 0.00 3.16
601 615 1.897560 AGGGTGAGCAAAGTAAGTGC 58.102 50.000 0.00 0.00 42.55 4.40
632 646 8.939201 TTTTTGTTCTTTGCTTGTCATATCAA 57.061 26.923 0.00 0.00 0.00 2.57
633 647 7.928908 TTTGTTCTTTGCTTGTCATATCAAC 57.071 32.000 0.00 0.00 0.00 3.18
634 648 6.631971 TGTTCTTTGCTTGTCATATCAACA 57.368 33.333 0.00 0.00 0.00 3.33
635 649 7.036996 TGTTCTTTGCTTGTCATATCAACAA 57.963 32.000 1.38 1.38 35.44 2.83
644 658 5.016051 TGTCATATCAACAAGAGGAGAGC 57.984 43.478 0.00 0.00 0.00 4.09
645 659 4.467438 TGTCATATCAACAAGAGGAGAGCA 59.533 41.667 0.00 0.00 0.00 4.26
646 660 5.129980 TGTCATATCAACAAGAGGAGAGCAT 59.870 40.000 0.00 0.00 0.00 3.79
647 661 6.324770 TGTCATATCAACAAGAGGAGAGCATA 59.675 38.462 0.00 0.00 0.00 3.14
648 662 7.015974 TGTCATATCAACAAGAGGAGAGCATAT 59.984 37.037 0.00 0.00 0.00 1.78
649 663 7.331440 GTCATATCAACAAGAGGAGAGCATATG 59.669 40.741 0.00 0.00 0.00 1.78
650 664 5.883685 ATCAACAAGAGGAGAGCATATGA 57.116 39.130 6.97 0.00 0.00 2.15
651 665 5.682234 TCAACAAGAGGAGAGCATATGAA 57.318 39.130 6.97 0.00 0.00 2.57
652 666 6.053632 TCAACAAGAGGAGAGCATATGAAA 57.946 37.500 6.97 0.00 0.00 2.69
653 667 6.475504 TCAACAAGAGGAGAGCATATGAAAA 58.524 36.000 6.97 0.00 0.00 2.29
654 668 6.942005 TCAACAAGAGGAGAGCATATGAAAAA 59.058 34.615 6.97 0.00 0.00 1.94
655 669 7.613022 TCAACAAGAGGAGAGCATATGAAAAAT 59.387 33.333 6.97 0.00 0.00 1.82
656 670 8.896744 CAACAAGAGGAGAGCATATGAAAAATA 58.103 33.333 6.97 0.00 0.00 1.40
657 671 9.638176 AACAAGAGGAGAGCATATGAAAAATAT 57.362 29.630 6.97 0.00 0.00 1.28
661 675 9.732130 AGAGGAGAGCATATGAAAAATATAACC 57.268 33.333 6.97 0.00 0.00 2.85
662 676 8.870075 AGGAGAGCATATGAAAAATATAACCC 57.130 34.615 6.97 0.00 0.00 4.11
663 677 8.448008 AGGAGAGCATATGAAAAATATAACCCA 58.552 33.333 6.97 0.00 0.00 4.51
664 678 9.247861 GGAGAGCATATGAAAAATATAACCCAT 57.752 33.333 6.97 0.00 0.00 4.00
799 813 2.616842 TGTTCTCTCGGAAAGCCAAAAC 59.383 45.455 0.00 0.00 35.51 2.43
897 918 3.408501 CTCTCCGCTGCACTCCTCG 62.409 68.421 0.00 0.00 0.00 4.63
965 986 2.431942 CCGTTTCCTCGACCACGG 60.432 66.667 5.78 5.78 45.75 4.94
996 1017 4.456806 GCCGTGCGAATCCCTATT 57.543 55.556 0.00 0.00 0.00 1.73
1100 1121 0.250166 CCCCCGTTCGTCTCAAAGTT 60.250 55.000 0.00 0.00 0.00 2.66
1176 1197 1.470458 GCTCAGCTTAATTGCTTGGGC 60.470 52.381 0.00 0.00 41.98 5.36
1211 1232 1.539388 CCAACAGCCGTTTATTGCTCA 59.461 47.619 0.00 0.00 35.12 4.26
1212 1233 2.030363 CCAACAGCCGTTTATTGCTCAA 60.030 45.455 0.00 0.00 35.12 3.02
1491 1512 4.324254 CCATTGGTTTGGAGCTAGGTTCTA 60.324 45.833 1.12 0.00 39.25 2.10
1552 1573 5.264395 TCATCTTGGTGTGACATCTAGAGA 58.736 41.667 14.71 9.72 30.94 3.10
1560 1581 4.390297 GTGTGACATCTAGAGAAAGTTGCC 59.610 45.833 0.00 0.00 0.00 4.52
1561 1582 4.040339 TGTGACATCTAGAGAAAGTTGCCA 59.960 41.667 0.00 0.00 0.00 4.92
1597 1618 5.471456 AGTCAGCCAGTCTGTTTCTTATTTG 59.529 40.000 0.00 0.00 43.32 2.32
1598 1619 5.470098 GTCAGCCAGTCTGTTTCTTATTTGA 59.530 40.000 0.00 0.00 43.32 2.69
1599 1620 6.150140 GTCAGCCAGTCTGTTTCTTATTTGAT 59.850 38.462 0.00 0.00 43.32 2.57
1600 1621 6.149973 TCAGCCAGTCTGTTTCTTATTTGATG 59.850 38.462 0.00 0.00 43.32 3.07
1601 1622 6.149973 CAGCCAGTCTGTTTCTTATTTGATGA 59.850 38.462 0.00 0.00 38.02 2.92
1602 1623 6.888632 AGCCAGTCTGTTTCTTATTTGATGAT 59.111 34.615 0.00 0.00 0.00 2.45
1657 1678 1.678101 ACACAAGAGCAAAGTTCAGGC 59.322 47.619 0.00 0.00 0.00 4.85
2086 2509 5.885912 TGGATTTCCTAAAAGTATCTGCACC 59.114 40.000 0.00 0.00 36.82 5.01
2323 2746 3.945346 TCGTTGGTATGTTTGGCATAGT 58.055 40.909 0.00 0.00 40.42 2.12
2324 2747 3.936453 TCGTTGGTATGTTTGGCATAGTC 59.064 43.478 0.00 0.00 40.42 2.59
2359 2782 5.613329 TGACACATTCCCTAGTTTTAACGT 58.387 37.500 0.00 0.00 0.00 3.99
2365 2788 6.938030 ACATTCCCTAGTTTTAACGTGATTCA 59.062 34.615 0.00 0.00 0.00 2.57
2497 2920 6.097696 TGAGGTATTTCATCCACGAACATAGA 59.902 38.462 0.00 0.00 0.00 1.98
2512 2935 6.095021 ACGAACATAGACATTCAGTAGCAGTA 59.905 38.462 0.00 0.00 0.00 2.74
2651 3080 7.915293 TTTTACAGTTGGGTGATACACTATG 57.085 36.000 0.00 0.00 34.40 2.23
2739 3169 0.733729 CAGGCAGCTGAAGAATGCTC 59.266 55.000 20.43 0.00 39.88 4.26
2845 3275 7.075741 CACTATGTTTGTTACCTGTTAGTTGC 58.924 38.462 0.00 0.00 0.00 4.17
2866 3296 7.554476 AGTTGCTTCTTTCTGAAAACTTAGACT 59.446 33.333 4.18 2.95 34.07 3.24
3120 3550 4.335416 GGTGAGACCTCATGGAAAATTCA 58.665 43.478 2.78 0.00 42.18 2.57
3281 3712 3.403038 TGTGAAGCTAACTTTCAGAGCC 58.597 45.455 0.00 0.00 35.82 4.70
3293 3724 6.959639 ACTTTCAGAGCCAAATCAGTTTTA 57.040 33.333 0.00 0.00 0.00 1.52
3323 3754 8.482128 TCTTACAAAATTTCCATTTCCACACTT 58.518 29.630 0.00 0.00 30.80 3.16
3349 3780 5.192327 CTGAAATGTTGCTTCAGGAGTTT 57.808 39.130 5.04 0.00 44.00 2.66
3350 3781 5.594926 CTGAAATGTTGCTTCAGGAGTTTT 58.405 37.500 5.04 0.00 44.00 2.43
3351 3782 5.591099 TGAAATGTTGCTTCAGGAGTTTTC 58.409 37.500 0.00 0.00 0.00 2.29
3354 3785 7.231317 TGAAATGTTGCTTCAGGAGTTTTCTAT 59.769 33.333 0.00 0.00 0.00 1.98
3355 3786 7.530426 AATGTTGCTTCAGGAGTTTTCTATT 57.470 32.000 0.00 0.00 0.00 1.73
3356 3787 6.560253 TGTTGCTTCAGGAGTTTTCTATTC 57.440 37.500 0.00 0.00 0.00 1.75
3359 3790 7.936847 TGTTGCTTCAGGAGTTTTCTATTCTTA 59.063 33.333 0.00 0.00 0.00 2.10
3360 3791 7.907214 TGCTTCAGGAGTTTTCTATTCTTAC 57.093 36.000 0.00 0.00 0.00 2.34
3362 3793 7.936847 TGCTTCAGGAGTTTTCTATTCTTACAA 59.063 33.333 0.00 0.00 0.00 2.41
3456 4030 9.585099 GGTTTCTTGTTTCATCATATTATTGCA 57.415 29.630 0.00 0.00 0.00 4.08
3535 4109 2.158608 ACCAGCCTCTTATGTATTGGGC 60.159 50.000 0.00 0.00 39.82 5.36
3629 4203 1.608590 ACATGCTTGGAACGTGGAAAG 59.391 47.619 4.44 0.00 0.00 2.62
3708 4282 5.462034 GCATAGAGCAAACTGTTCACTAG 57.538 43.478 0.00 0.00 44.79 2.57
3709 4283 4.331168 GCATAGAGCAAACTGTTCACTAGG 59.669 45.833 0.00 0.00 44.79 3.02
3710 4284 3.409026 AGAGCAAACTGTTCACTAGGG 57.591 47.619 0.00 0.00 29.40 3.53
3711 4285 2.039084 AGAGCAAACTGTTCACTAGGGG 59.961 50.000 0.00 0.00 29.40 4.79
3712 4286 1.774856 AGCAAACTGTTCACTAGGGGT 59.225 47.619 0.00 0.00 0.00 4.95
3713 4287 1.880027 GCAAACTGTTCACTAGGGGTG 59.120 52.381 0.00 0.00 46.60 4.61
3714 4288 2.504367 CAAACTGTTCACTAGGGGTGG 58.496 52.381 0.00 0.00 45.38 4.61
3715 4289 1.064825 AACTGTTCACTAGGGGTGGG 58.935 55.000 0.00 0.00 45.38 4.61
3716 4290 1.299976 CTGTTCACTAGGGGTGGGC 59.700 63.158 0.00 0.00 45.38 5.36
3717 4291 1.462432 TGTTCACTAGGGGTGGGCA 60.462 57.895 0.00 0.00 45.38 5.36
3718 4292 0.844661 TGTTCACTAGGGGTGGGCAT 60.845 55.000 0.00 0.00 45.38 4.40
3719 4293 1.209621 GTTCACTAGGGGTGGGCATA 58.790 55.000 0.00 0.00 45.38 3.14
3720 4294 1.562475 GTTCACTAGGGGTGGGCATAA 59.438 52.381 0.00 0.00 45.38 1.90
3721 4295 1.974028 TCACTAGGGGTGGGCATAAA 58.026 50.000 0.00 0.00 45.38 1.40
3722 4296 2.280103 TCACTAGGGGTGGGCATAAAA 58.720 47.619 0.00 0.00 45.38 1.52
3723 4297 2.650322 TCACTAGGGGTGGGCATAAAAA 59.350 45.455 0.00 0.00 45.38 1.94
3724 4298 2.758423 CACTAGGGGTGGGCATAAAAAC 59.242 50.000 0.00 0.00 41.90 2.43
3725 4299 2.291996 ACTAGGGGTGGGCATAAAAACC 60.292 50.000 0.00 0.00 0.00 3.27
3726 4300 0.613572 AGGGGTGGGCATAAAAACCG 60.614 55.000 0.00 0.00 33.24 4.44
3727 4301 0.612453 GGGGTGGGCATAAAAACCGA 60.612 55.000 0.00 0.00 33.24 4.69
3728 4302 0.528924 GGGTGGGCATAAAAACCGAC 59.471 55.000 0.00 0.00 34.22 4.79
3729 4303 0.169451 GGTGGGCATAAAAACCGACG 59.831 55.000 0.00 0.00 35.67 5.12
3730 4304 1.158434 GTGGGCATAAAAACCGACGA 58.842 50.000 0.00 0.00 0.00 4.20
3731 4305 1.536331 GTGGGCATAAAAACCGACGAA 59.464 47.619 0.00 0.00 0.00 3.85
3732 4306 1.536331 TGGGCATAAAAACCGACGAAC 59.464 47.619 0.00 0.00 0.00 3.95
3733 4307 1.135603 GGGCATAAAAACCGACGAACC 60.136 52.381 0.00 0.00 0.00 3.62
3734 4308 1.464521 GGCATAAAAACCGACGAACCG 60.465 52.381 0.00 0.00 0.00 4.44
3735 4309 1.460359 GCATAAAAACCGACGAACCGA 59.540 47.619 0.00 0.00 0.00 4.69
3736 4310 2.096318 GCATAAAAACCGACGAACCGAA 60.096 45.455 0.00 0.00 0.00 4.30
3737 4311 3.728600 CATAAAAACCGACGAACCGAAG 58.271 45.455 0.00 0.00 0.00 3.79
3738 4312 0.305617 AAAAACCGACGAACCGAAGC 59.694 50.000 0.00 0.00 0.00 3.86
3739 4313 1.501337 AAAACCGACGAACCGAAGCC 61.501 55.000 0.00 0.00 0.00 4.35
3740 4314 4.712425 ACCGACGAACCGAAGCCG 62.712 66.667 0.00 0.00 0.00 5.52
3741 4315 4.409218 CCGACGAACCGAAGCCGA 62.409 66.667 0.00 0.00 38.22 5.54
3742 4316 2.429571 CGACGAACCGAAGCCGAA 60.430 61.111 0.00 0.00 38.22 4.30
3743 4317 2.017783 CGACGAACCGAAGCCGAAA 61.018 57.895 0.00 0.00 38.22 3.46
3744 4318 1.550659 CGACGAACCGAAGCCGAAAA 61.551 55.000 0.00 0.00 38.22 2.29
3745 4319 0.582960 GACGAACCGAAGCCGAAAAA 59.417 50.000 0.00 0.00 38.22 1.94
3770 4344 4.816643 CGAATTTTCGGTTTTTGTTGGTG 58.183 39.130 4.81 0.00 46.30 4.17
3771 4345 4.583426 GAATTTTCGGTTTTTGTTGGTGC 58.417 39.130 0.00 0.00 0.00 5.01
3772 4346 3.320673 TTTTCGGTTTTTGTTGGTGCT 57.679 38.095 0.00 0.00 0.00 4.40
3773 4347 4.451629 TTTTCGGTTTTTGTTGGTGCTA 57.548 36.364 0.00 0.00 0.00 3.49
3774 4348 3.423996 TTCGGTTTTTGTTGGTGCTAC 57.576 42.857 0.00 0.00 0.00 3.58
3775 4349 2.366533 TCGGTTTTTGTTGGTGCTACA 58.633 42.857 0.00 0.00 0.00 2.74
3776 4350 2.356382 TCGGTTTTTGTTGGTGCTACAG 59.644 45.455 0.00 0.00 0.00 2.74
3777 4351 2.098443 CGGTTTTTGTTGGTGCTACAGT 59.902 45.455 0.00 0.00 0.00 3.55
3778 4352 3.312973 CGGTTTTTGTTGGTGCTACAGTA 59.687 43.478 0.00 0.00 0.00 2.74
3779 4353 4.201930 CGGTTTTTGTTGGTGCTACAGTAA 60.202 41.667 0.00 0.00 0.00 2.24
3780 4354 5.652518 GGTTTTTGTTGGTGCTACAGTAAA 58.347 37.500 0.00 0.00 0.00 2.01
3781 4355 6.100668 GGTTTTTGTTGGTGCTACAGTAAAA 58.899 36.000 0.00 0.00 0.00 1.52
3782 4356 6.759356 GGTTTTTGTTGGTGCTACAGTAAAAT 59.241 34.615 0.00 0.00 0.00 1.82
3783 4357 7.279090 GGTTTTTGTTGGTGCTACAGTAAAATT 59.721 33.333 0.00 0.00 0.00 1.82
3784 4358 7.995463 TTTTGTTGGTGCTACAGTAAAATTC 57.005 32.000 0.00 0.00 0.00 2.17
3785 4359 5.351233 TGTTGGTGCTACAGTAAAATTCG 57.649 39.130 0.00 0.00 0.00 3.34
3786 4360 4.214545 TGTTGGTGCTACAGTAAAATTCGG 59.785 41.667 0.00 0.00 0.00 4.30
3787 4361 4.010667 TGGTGCTACAGTAAAATTCGGT 57.989 40.909 0.00 0.00 0.00 4.69
3788 4362 4.391155 TGGTGCTACAGTAAAATTCGGTT 58.609 39.130 0.00 0.00 0.00 4.44
3789 4363 4.822896 TGGTGCTACAGTAAAATTCGGTTT 59.177 37.500 0.00 0.00 0.00 3.27
3790 4364 5.049267 TGGTGCTACAGTAAAATTCGGTTTC 60.049 40.000 0.00 0.00 0.00 2.78
3791 4365 5.388111 GTGCTACAGTAAAATTCGGTTTCC 58.612 41.667 0.00 0.00 0.00 3.13
3792 4366 5.049267 GTGCTACAGTAAAATTCGGTTTCCA 60.049 40.000 0.00 0.00 0.00 3.53
3793 4367 5.180492 TGCTACAGTAAAATTCGGTTTCCAG 59.820 40.000 0.00 0.00 0.00 3.86
3794 4368 5.180680 GCTACAGTAAAATTCGGTTTCCAGT 59.819 40.000 0.00 0.00 0.00 4.00
3795 4369 6.293790 GCTACAGTAAAATTCGGTTTCCAGTT 60.294 38.462 0.00 0.00 0.00 3.16
3796 4370 7.095102 GCTACAGTAAAATTCGGTTTCCAGTTA 60.095 37.037 0.00 0.00 0.00 2.24
3797 4371 7.754851 ACAGTAAAATTCGGTTTCCAGTTAT 57.245 32.000 0.00 0.00 0.00 1.89
3798 4372 8.851541 ACAGTAAAATTCGGTTTCCAGTTATA 57.148 30.769 0.00 0.00 0.00 0.98
3799 4373 8.724229 ACAGTAAAATTCGGTTTCCAGTTATAC 58.276 33.333 0.00 0.00 0.00 1.47
3800 4374 8.943002 CAGTAAAATTCGGTTTCCAGTTATACT 58.057 33.333 0.00 0.00 0.00 2.12
3804 4378 7.854557 AATTCGGTTTCCAGTTATACTAACC 57.145 36.000 0.00 0.00 33.24 2.85
3805 4379 5.999205 TCGGTTTCCAGTTATACTAACCA 57.001 39.130 0.00 0.00 35.22 3.67
3806 4380 6.357579 TCGGTTTCCAGTTATACTAACCAA 57.642 37.500 0.00 0.00 35.22 3.67
3807 4381 6.767456 TCGGTTTCCAGTTATACTAACCAAA 58.233 36.000 0.00 0.00 35.22 3.28
3808 4382 7.396418 TCGGTTTCCAGTTATACTAACCAAAT 58.604 34.615 0.00 0.00 35.22 2.32
3809 4383 7.884354 TCGGTTTCCAGTTATACTAACCAAATT 59.116 33.333 0.00 0.00 35.22 1.82
3810 4384 8.517056 CGGTTTCCAGTTATACTAACCAAATTT 58.483 33.333 0.00 0.00 35.22 1.82
3825 4399 9.257865 CTAACCAAATTTAATTCGTACAGTTCG 57.742 33.333 0.00 0.00 0.00 3.95
3826 4400 6.604930 ACCAAATTTAATTCGTACAGTTCGG 58.395 36.000 0.00 0.00 0.00 4.30
3827 4401 6.205270 ACCAAATTTAATTCGTACAGTTCGGT 59.795 34.615 0.00 0.00 0.00 4.69
3828 4402 7.079475 CCAAATTTAATTCGTACAGTTCGGTT 58.921 34.615 0.00 0.00 0.00 4.44
3829 4403 7.592164 CCAAATTTAATTCGTACAGTTCGGTTT 59.408 33.333 0.00 0.00 0.00 3.27
3830 4404 8.960075 CAAATTTAATTCGTACAGTTCGGTTTT 58.040 29.630 0.00 0.00 0.00 2.43
3835 4409 6.892310 ATTCGTACAGTTCGGTTTTATACC 57.108 37.500 0.00 0.00 44.03 2.73
3849 4423 7.656707 GGTTTTATACCGTAACTGAAACAGA 57.343 36.000 5.76 0.00 37.12 3.41
3850 4424 8.086851 GGTTTTATACCGTAACTGAAACAGAA 57.913 34.615 5.76 0.00 37.12 3.02
3851 4425 8.558700 GGTTTTATACCGTAACTGAAACAGAAA 58.441 33.333 5.76 0.00 37.12 2.52
3852 4426 9.373750 GTTTTATACCGTAACTGAAACAGAAAC 57.626 33.333 5.76 2.82 35.18 2.78
3853 4427 7.656707 TTATACCGTAACTGAAACAGAAACC 57.343 36.000 5.76 0.00 35.18 3.27
3854 4428 2.867975 ACCGTAACTGAAACAGAAACCG 59.132 45.455 5.76 2.85 35.18 4.44
3855 4429 3.125316 CCGTAACTGAAACAGAAACCGA 58.875 45.455 5.76 0.00 35.18 4.69
3856 4430 3.556775 CCGTAACTGAAACAGAAACCGAA 59.443 43.478 5.76 0.00 35.18 4.30
3857 4431 4.318546 CCGTAACTGAAACAGAAACCGAAG 60.319 45.833 5.76 0.00 35.18 3.79
3858 4432 4.269363 CGTAACTGAAACAGAAACCGAAGT 59.731 41.667 5.76 0.00 35.18 3.01
3859 4433 5.459762 CGTAACTGAAACAGAAACCGAAGTA 59.540 40.000 5.76 0.00 35.18 2.24
3860 4434 6.019640 CGTAACTGAAACAGAAACCGAAGTAA 60.020 38.462 5.76 0.00 35.18 2.24
3861 4435 6.937436 AACTGAAACAGAAACCGAAGTAAT 57.063 33.333 5.76 0.00 35.18 1.89
3862 4436 6.300354 ACTGAAACAGAAACCGAAGTAATG 57.700 37.500 5.76 0.00 35.18 1.90
3863 4437 5.820947 ACTGAAACAGAAACCGAAGTAATGT 59.179 36.000 5.76 0.00 35.18 2.71
3864 4438 6.055231 TGAAACAGAAACCGAAGTAATGTG 57.945 37.500 0.00 0.00 0.00 3.21
3865 4439 5.818336 TGAAACAGAAACCGAAGTAATGTGA 59.182 36.000 0.00 0.00 0.00 3.58
3866 4440 6.485313 TGAAACAGAAACCGAAGTAATGTGAT 59.515 34.615 0.00 0.00 0.00 3.06
3867 4441 6.481954 AACAGAAACCGAAGTAATGTGATC 57.518 37.500 0.00 0.00 0.00 2.92
3868 4442 4.625742 ACAGAAACCGAAGTAATGTGATCG 59.374 41.667 0.00 0.00 35.19 3.69
3869 4443 4.625742 CAGAAACCGAAGTAATGTGATCGT 59.374 41.667 0.00 0.00 33.65 3.73
3870 4444 5.803461 CAGAAACCGAAGTAATGTGATCGTA 59.197 40.000 0.00 0.00 33.65 3.43
3871 4445 5.803967 AGAAACCGAAGTAATGTGATCGTAC 59.196 40.000 0.00 0.00 33.65 3.67
3872 4446 4.707030 ACCGAAGTAATGTGATCGTACA 57.293 40.909 0.00 0.00 33.65 2.90
3873 4447 4.418392 ACCGAAGTAATGTGATCGTACAC 58.582 43.478 7.53 7.53 40.68 2.90
3874 4448 3.481028 CCGAAGTAATGTGATCGTACACG 59.519 47.826 0.00 0.00 42.86 4.49
3875 4449 3.062059 CGAAGTAATGTGATCGTACACGC 60.062 47.826 0.00 0.00 42.86 5.34
3876 4450 3.497297 AGTAATGTGATCGTACACGCA 57.503 42.857 0.00 0.00 42.86 5.24
3877 4451 3.840468 AGTAATGTGATCGTACACGCAA 58.160 40.909 0.00 0.00 42.86 4.85
3878 4452 4.239304 AGTAATGTGATCGTACACGCAAA 58.761 39.130 0.00 0.00 42.86 3.68
3879 4453 3.449322 AATGTGATCGTACACGCAAAC 57.551 42.857 0.00 0.00 42.86 2.93
3880 4454 1.141645 TGTGATCGTACACGCAAACC 58.858 50.000 0.00 0.00 42.86 3.27
3881 4455 0.092351 GTGATCGTACACGCAAACCG 59.908 55.000 0.00 0.00 44.21 4.44
3882 4456 0.039346 TGATCGTACACGCAAACCGA 60.039 50.000 0.00 0.00 41.02 4.69
3883 4457 1.062258 GATCGTACACGCAAACCGAA 58.938 50.000 0.00 0.00 41.02 4.30
3884 4458 1.657094 GATCGTACACGCAAACCGAAT 59.343 47.619 0.00 0.00 41.02 3.34
3885 4459 1.500108 TCGTACACGCAAACCGAATT 58.500 45.000 0.00 0.00 41.02 2.17
3886 4460 1.456544 TCGTACACGCAAACCGAATTC 59.543 47.619 0.00 0.00 41.02 2.17
3887 4461 1.192757 CGTACACGCAAACCGAATTCA 59.807 47.619 6.22 0.00 41.02 2.57
3888 4462 2.159761 CGTACACGCAAACCGAATTCAT 60.160 45.455 6.22 0.00 41.02 2.57
3889 4463 3.061028 CGTACACGCAAACCGAATTCATA 59.939 43.478 6.22 0.00 41.02 2.15
3890 4464 4.434461 CGTACACGCAAACCGAATTCATAA 60.434 41.667 6.22 0.00 41.02 1.90
3891 4465 4.491234 ACACGCAAACCGAATTCATAAA 57.509 36.364 6.22 0.00 41.02 1.40
3892 4466 4.861210 ACACGCAAACCGAATTCATAAAA 58.139 34.783 6.22 0.00 41.02 1.52
3893 4467 5.282510 ACACGCAAACCGAATTCATAAAAA 58.717 33.333 6.22 0.00 41.02 1.94
3921 4495 2.973945 AGTAGAAACTGACCGAATGCC 58.026 47.619 0.00 0.00 33.57 4.40
3922 4496 2.007608 GTAGAAACTGACCGAATGCCC 58.992 52.381 0.00 0.00 0.00 5.36
3923 4497 0.400213 AGAAACTGACCGAATGCCCA 59.600 50.000 0.00 0.00 0.00 5.36
3924 4498 0.804989 GAAACTGACCGAATGCCCAG 59.195 55.000 0.00 0.00 0.00 4.45
3925 4499 0.609131 AAACTGACCGAATGCCCAGG 60.609 55.000 0.00 0.00 0.00 4.45
3926 4500 2.825836 CTGACCGAATGCCCAGGC 60.826 66.667 0.38 0.38 42.35 4.85
3927 4501 4.424711 TGACCGAATGCCCAGGCC 62.425 66.667 6.14 0.00 41.09 5.19
3928 4502 4.115199 GACCGAATGCCCAGGCCT 62.115 66.667 0.00 0.00 41.09 5.19
3973 4547 8.418662 TCCACCAAACATGTAGATATACTGTAC 58.581 37.037 0.00 0.00 0.00 2.90
4007 4581 0.809636 GTGGGTTGTGCTTGTTTGGC 60.810 55.000 0.00 0.00 0.00 4.52
4008 4582 1.260538 TGGGTTGTGCTTGTTTGGCA 61.261 50.000 0.00 0.00 37.36 4.92
4009 4583 0.106521 GGGTTGTGCTTGTTTGGCAT 59.893 50.000 0.00 0.00 41.86 4.40
4010 4584 1.501169 GGTTGTGCTTGTTTGGCATC 58.499 50.000 0.00 0.00 41.86 3.91
4011 4585 1.501169 GTTGTGCTTGTTTGGCATCC 58.499 50.000 0.00 0.00 41.86 3.51
4012 4586 1.117994 TTGTGCTTGTTTGGCATCCA 58.882 45.000 0.00 0.00 41.86 3.41
4013 4587 0.675083 TGTGCTTGTTTGGCATCCAG 59.325 50.000 0.00 0.00 41.86 3.86
4327 4901 1.835531 ACGTACCTTCCACCCATAAGG 59.164 52.381 0.00 0.00 46.44 2.69
4377 4951 2.225650 ACCCATCCAGGACTAGTGAAGT 60.226 50.000 0.00 0.00 42.80 3.01
4637 5229 1.076727 TGCTCGAGGAGAGGGTCAA 59.923 57.895 15.58 0.00 46.91 3.18
5428 6071 3.056607 CGTTTGGAGCATGGGAATTTTCT 60.057 43.478 0.00 0.00 0.00 2.52
5494 6137 6.260050 GTGCAGAATCCGTGAATCCTAAATAA 59.740 38.462 0.00 0.00 0.00 1.40
5576 6219 9.740239 TGGCACTAAATATAAACTAGACTAACG 57.260 33.333 0.00 0.00 0.00 3.18
5578 6221 8.697960 GCACTAAATATAAACTAGACTAACGCC 58.302 37.037 0.00 0.00 0.00 5.68
5668 6312 1.006086 TTTGTGATGCCGCGTATCTG 58.994 50.000 17.77 0.00 0.00 2.90
5837 6481 5.298989 TGCTCTTTTTGACCTACCTTACA 57.701 39.130 0.00 0.00 0.00 2.41
5874 6518 4.508124 CGACTGGGAACATCTTTATGTAGC 59.492 45.833 0.00 0.00 45.79 3.58
5876 6520 6.067217 ACTGGGAACATCTTTATGTAGCTT 57.933 37.500 0.00 0.00 45.79 3.74
5919 6563 2.222027 CTCGATTTATGGGTTCCTGCC 58.778 52.381 0.00 0.00 0.00 4.85
5953 6597 3.369546 AATTTTTGCCAAGTCCAGTCG 57.630 42.857 0.00 0.00 0.00 4.18
5977 6621 7.011109 TCGCTTGTTTAGAATATTTAGGCTGAC 59.989 37.037 0.00 0.00 0.00 3.51
5991 6635 1.337703 GGCTGACATGAAGCAACACAA 59.662 47.619 21.17 0.00 42.69 3.33
6016 6660 5.726980 ACATGTTCAGTATGCCAATTTGT 57.273 34.783 0.00 0.00 34.76 2.83
6157 6803 6.838401 ACTATCTCCCATTCTTTCTTGGAT 57.162 37.500 0.00 0.00 34.81 3.41
6337 6983 3.374367 GGGCTCTCCTTTTATGTTTCGAC 59.626 47.826 0.00 0.00 0.00 4.20
6864 7527 3.191669 TCCACGACAACAACTTGTGTAG 58.808 45.455 0.00 0.26 40.93 2.74
6875 7538 7.039993 ACAACAACTTGTGTAGGTTTTTCTTCT 60.040 33.333 0.00 0.00 40.60 2.85
6916 7579 3.952323 AGCCACGATGTCTAAAGCTAGTA 59.048 43.478 0.00 0.00 0.00 1.82
6917 7580 4.401519 AGCCACGATGTCTAAAGCTAGTAA 59.598 41.667 0.00 0.00 0.00 2.24
6918 7581 5.105473 AGCCACGATGTCTAAAGCTAGTAAA 60.105 40.000 0.00 0.00 0.00 2.01
6919 7582 5.232414 GCCACGATGTCTAAAGCTAGTAAAG 59.768 44.000 0.00 0.00 0.00 1.85
6956 7622 4.712051 TCTATTGCTGCCCATGAATACT 57.288 40.909 0.00 0.00 0.00 2.12
6961 7627 3.743521 TGCTGCCCATGAATACTGTATC 58.256 45.455 0.00 0.00 0.00 2.24
6962 7628 3.077359 GCTGCCCATGAATACTGTATCC 58.923 50.000 0.00 0.00 0.00 2.59
6963 7629 3.496692 GCTGCCCATGAATACTGTATCCA 60.497 47.826 0.00 0.00 0.00 3.41
6964 7630 4.808665 GCTGCCCATGAATACTGTATCCAT 60.809 45.833 0.00 0.00 0.00 3.41
7034 7700 3.688235 TCAAATGCAGATCCACATGTGA 58.312 40.909 27.46 13.37 38.02 3.58
7210 7879 6.072397 TGTGTATATGTGGTAGTTTGGTTTGC 60.072 38.462 0.00 0.00 0.00 3.68
7223 7892 3.695830 TGGTTTGCTGGAAGTAGTAGG 57.304 47.619 0.00 0.00 35.30 3.18
7226 7895 3.244457 GGTTTGCTGGAAGTAGTAGGTGT 60.244 47.826 0.00 0.00 35.30 4.16
7247 7916 2.675844 TGGCATGGATTTAGAAACGACG 59.324 45.455 0.00 0.00 0.00 5.12
7248 7917 2.538939 GGCATGGATTTAGAAACGACGC 60.539 50.000 0.00 0.00 0.00 5.19
7283 7952 1.485895 AGTTGCCTGCCAATGTTTGTT 59.514 42.857 0.00 0.00 35.55 2.83
7313 7982 9.974980 GGTTTAATCAAAAGAACCATTTGTAGA 57.025 29.630 0.00 0.00 40.90 2.59
7365 8040 1.486310 TGGCCACCAGATATCTCACAC 59.514 52.381 0.00 0.00 0.00 3.82
7388 8083 9.835389 ACACCAGTAAGTTTATAACTACAACAA 57.165 29.630 0.00 0.00 41.91 2.83
7505 8206 6.151985 TGTTATTTATTGTTGACGGAGGCATT 59.848 34.615 0.00 0.00 0.00 3.56
7507 8208 1.176527 ATTGTTGACGGAGGCATTGG 58.823 50.000 0.00 0.00 0.00 3.16
7525 8226 4.916983 TTGGATTGGAGTTTGACACAAG 57.083 40.909 0.00 0.00 0.00 3.16
7559 8260 1.271840 TTTCCATGGGACCCTCGGAG 61.272 60.000 13.02 0.00 0.00 4.63
7582 8283 5.526479 AGTTACGCACTCGATATCTTCTACA 59.474 40.000 0.34 0.00 39.41 2.74
7595 8296 9.186323 CGATATCTTCTACAGATTCATTTCGTT 57.814 33.333 0.34 0.00 39.47 3.85
7604 8305 7.849804 ACAGATTCATTTCGTTAATGCTACT 57.150 32.000 7.76 4.93 42.79 2.57
7613 8314 7.636150 TTTCGTTAATGCTACTAGTAGGAGT 57.364 36.000 27.24 25.86 36.95 3.85
7672 8375 4.386761 CCTCTCATGGGGTGGTTTCATATT 60.387 45.833 0.00 0.00 0.00 1.28
7677 8380 7.073088 TCTCATGGGGTGGTTTCATATTACATA 59.927 37.037 0.00 0.00 0.00 2.29
7723 8426 6.627087 TCAAGATCAAGTGAATCCCTAACT 57.373 37.500 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.855715 TCTTGATATCCCGACTCATGTC 57.144 45.455 0.00 0.00 39.70 3.06
22 23 4.221703 GGATCTTGATATCCCGACTCATGT 59.778 45.833 0.00 0.00 39.74 3.21
23 24 4.676459 CGGATCTTGATATCCCGACTCATG 60.676 50.000 10.76 0.00 42.21 3.07
24 25 3.445450 CGGATCTTGATATCCCGACTCAT 59.555 47.826 10.76 0.00 42.21 2.90
25 26 2.820197 CGGATCTTGATATCCCGACTCA 59.180 50.000 10.76 0.00 42.21 3.41
26 27 2.820787 ACGGATCTTGATATCCCGACTC 59.179 50.000 19.99 7.74 42.21 3.36
27 28 2.820787 GACGGATCTTGATATCCCGACT 59.179 50.000 19.99 3.08 42.21 4.18
32 33 2.229062 TCGCAGACGGATCTTGATATCC 59.771 50.000 0.00 0.00 41.85 2.59
39 40 2.496817 GGCTCGCAGACGGATCTT 59.503 61.111 0.00 0.00 40.63 2.40
40 41 3.893763 CGGCTCGCAGACGGATCT 61.894 66.667 3.77 0.00 44.58 2.75
47 48 4.357947 GTGTCCACGGCTCGCAGA 62.358 66.667 0.00 0.00 0.00 4.26
67 68 3.636231 TTGGAGGTGAGGCACGGG 61.636 66.667 0.00 0.00 34.83 5.28
69 70 2.738521 CGTTGGAGGTGAGGCACG 60.739 66.667 0.00 0.00 34.83 5.34
72 73 1.668151 GACACGTTGGAGGTGAGGC 60.668 63.158 7.66 0.00 37.42 4.70
77 78 2.029073 CAGCGACACGTTGGAGGT 59.971 61.111 0.00 0.00 34.62 3.85
103 104 2.241880 CGTGGTGGTGTCGTGGTTC 61.242 63.158 0.00 0.00 0.00 3.62
115 116 4.320456 AGCAGCCTCACCGTGGTG 62.320 66.667 12.91 12.91 46.64 4.17
117 118 3.245668 AAGAGCAGCCTCACCGTGG 62.246 63.158 0.00 0.00 40.68 4.94
118 119 1.739562 GAAGAGCAGCCTCACCGTG 60.740 63.158 0.00 0.00 40.68 4.94
119 120 1.882989 GAGAAGAGCAGCCTCACCGT 61.883 60.000 0.00 0.00 40.68 4.83
120 121 1.153667 GAGAAGAGCAGCCTCACCG 60.154 63.158 0.00 0.00 40.68 4.94
121 122 1.220477 GGAGAAGAGCAGCCTCACC 59.780 63.158 0.00 0.00 40.68 4.02
122 123 1.153667 CGGAGAAGAGCAGCCTCAC 60.154 63.158 0.00 0.00 40.68 3.51
123 124 3.011635 GCGGAGAAGAGCAGCCTCA 62.012 63.158 0.00 0.00 40.68 3.86
124 125 2.202864 GCGGAGAAGAGCAGCCTC 60.203 66.667 0.00 0.00 38.42 4.70
125 126 2.999648 TGCGGAGAAGAGCAGCCT 61.000 61.111 0.00 0.00 38.59 4.58
147 148 3.358076 GAGACGGAGGGCGTTGAGG 62.358 68.421 0.00 0.00 0.00 3.86
174 176 2.159382 CGCACCTTACCCATTCTGTTT 58.841 47.619 0.00 0.00 0.00 2.83
190 192 2.465097 ATCGAGGAGCTATCGCGCAC 62.465 60.000 8.75 0.00 42.32 5.34
191 193 2.261586 ATCGAGGAGCTATCGCGCA 61.262 57.895 8.75 0.00 42.32 6.09
193 195 1.154131 CCATCGAGGAGCTATCGCG 60.154 63.158 14.37 0.00 41.22 5.87
194 196 1.445238 GCCATCGAGGAGCTATCGC 60.445 63.158 14.37 0.00 41.22 4.58
195 197 1.214062 GGCCATCGAGGAGCTATCG 59.786 63.158 13.27 13.27 41.22 2.92
196 198 0.530288 GAGGCCATCGAGGAGCTATC 59.470 60.000 5.01 0.25 41.22 2.08
197 199 0.902516 GGAGGCCATCGAGGAGCTAT 60.903 60.000 5.01 0.00 41.22 2.97
198 200 1.531840 GGAGGCCATCGAGGAGCTA 60.532 63.158 5.01 0.00 41.22 3.32
200 202 3.157252 TGGAGGCCATCGAGGAGC 61.157 66.667 5.01 0.00 41.22 4.70
208 210 4.741239 ACGGGAGGTGGAGGCCAT 62.741 66.667 5.01 0.00 35.28 4.40
217 219 2.603776 GGAGACACCACGGGAGGT 60.604 66.667 0.00 0.00 44.48 3.85
224 226 1.625818 AGGTCATTGAGGAGACACCAC 59.374 52.381 0.00 0.00 42.04 4.16
230 232 2.034878 CGGATGAGGTCATTGAGGAGA 58.965 52.381 0.00 0.00 36.57 3.71
234 236 1.405463 TCGACGGATGAGGTCATTGAG 59.595 52.381 0.00 0.00 36.57 3.02
251 264 3.856638 GCTTCAATTTGTTGCCACATCGA 60.857 43.478 0.00 0.00 31.06 3.59
257 270 2.694628 ACTCTGCTTCAATTTGTTGCCA 59.305 40.909 11.54 0.30 0.00 4.92
259 272 4.229876 GGTACTCTGCTTCAATTTGTTGC 58.770 43.478 0.00 3.33 0.00 4.17
264 277 6.823689 ACGATAATGGTACTCTGCTTCAATTT 59.176 34.615 0.00 0.00 0.00 1.82
268 281 5.339008 AACGATAATGGTACTCTGCTTCA 57.661 39.130 0.00 0.00 0.00 3.02
269 282 6.505272 ACTAACGATAATGGTACTCTGCTTC 58.495 40.000 0.00 0.00 0.00 3.86
273 286 4.910456 GCGACTAACGATAATGGTACTCTG 59.090 45.833 0.00 0.00 45.77 3.35
286 299 0.453950 GCAACTCGAGCGACTAACGA 60.454 55.000 13.61 0.00 45.77 3.85
318 331 2.224159 ACCCTGCAATCACCGGTCT 61.224 57.895 2.59 0.00 0.00 3.85
338 351 1.899437 GATTCTGGACCAGGTCGGCA 61.899 60.000 21.56 5.96 39.03 5.69
339 352 1.153349 GATTCTGGACCAGGTCGGC 60.153 63.158 21.56 1.04 39.03 5.54
340 353 1.522569 GGATTCTGGACCAGGTCGG 59.477 63.158 21.56 8.98 42.50 4.79
343 356 1.229529 ACCGGATTCTGGACCAGGT 60.230 57.895 21.56 10.64 31.51 4.00
352 365 1.604378 CAAGAGGCCACCGGATTCT 59.396 57.895 9.46 0.00 0.00 2.40
380 393 2.892425 GGATTGAGCGCCAGTCGG 60.892 66.667 2.29 0.00 38.94 4.79
385 398 0.745486 CACAGATGGATTGAGCGCCA 60.745 55.000 2.29 0.00 38.78 5.69
393 406 4.581824 GGCAATACATGTCACAGATGGATT 59.418 41.667 0.00 0.00 35.13 3.01
394 407 4.139786 GGCAATACATGTCACAGATGGAT 58.860 43.478 0.00 0.00 32.41 3.41
403 416 3.023832 TCTCTCTCGGCAATACATGTCA 58.976 45.455 0.00 0.00 31.20 3.58
405 418 2.363680 CCTCTCTCTCGGCAATACATGT 59.636 50.000 2.69 2.69 0.00 3.21
416 429 1.419762 TCTCCATCTCCCTCTCTCTCG 59.580 57.143 0.00 0.00 0.00 4.04
423 436 0.560688 ACCCTCTCTCCATCTCCCTC 59.439 60.000 0.00 0.00 0.00 4.30
424 437 0.264359 CACCCTCTCTCCATCTCCCT 59.736 60.000 0.00 0.00 0.00 4.20
426 439 1.216678 TCTCACCCTCTCTCCATCTCC 59.783 57.143 0.00 0.00 0.00 3.71
429 442 1.216678 TCCTCTCACCCTCTCTCCATC 59.783 57.143 0.00 0.00 0.00 3.51
430 443 1.313889 TCCTCTCACCCTCTCTCCAT 58.686 55.000 0.00 0.00 0.00 3.41
431 444 1.084866 TTCCTCTCACCCTCTCTCCA 58.915 55.000 0.00 0.00 0.00 3.86
432 445 2.038659 CATTCCTCTCACCCTCTCTCC 58.961 57.143 0.00 0.00 0.00 3.71
433 446 2.038659 CCATTCCTCTCACCCTCTCTC 58.961 57.143 0.00 0.00 0.00 3.20
434 447 1.343884 CCCATTCCTCTCACCCTCTCT 60.344 57.143 0.00 0.00 0.00 3.10
440 453 1.127343 CTCCTCCCATTCCTCTCACC 58.873 60.000 0.00 0.00 0.00 4.02
452 465 0.179070 GTCGCTTCCATTCTCCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
466 479 3.383185 CCTTATCCTTCTTCTCTGTCGCT 59.617 47.826 0.00 0.00 0.00 4.93
473 487 5.751028 CACGAATGACCTTATCCTTCTTCTC 59.249 44.000 0.00 0.00 31.60 2.87
496 510 2.420722 GTCTTGTTTGACCGGTGAAACA 59.579 45.455 37.87 37.87 43.06 2.83
498 512 2.018515 GGTCTTGTTTGACCGGTGAAA 58.981 47.619 14.63 15.25 45.69 2.69
499 513 1.670791 GGTCTTGTTTGACCGGTGAA 58.329 50.000 14.63 7.32 45.69 3.18
500 514 3.390003 GGTCTTGTTTGACCGGTGA 57.610 52.632 14.63 0.00 45.69 4.02
578 592 4.441495 GCACTTACTTTGCTCACCCTTTTT 60.441 41.667 0.00 0.00 37.00 1.94
579 593 3.068165 GCACTTACTTTGCTCACCCTTTT 59.932 43.478 0.00 0.00 37.00 2.27
580 594 2.623416 GCACTTACTTTGCTCACCCTTT 59.377 45.455 0.00 0.00 37.00 3.11
581 595 2.230660 GCACTTACTTTGCTCACCCTT 58.769 47.619 0.00 0.00 37.00 3.95
582 596 1.897560 GCACTTACTTTGCTCACCCT 58.102 50.000 0.00 0.00 37.00 4.34
607 621 8.816144 GTTGATATGACAAGCAAAGAACAAAAA 58.184 29.630 0.00 0.00 0.00 1.94
608 622 7.978414 TGTTGATATGACAAGCAAAGAACAAAA 59.022 29.630 0.00 0.00 0.00 2.44
609 623 7.487484 TGTTGATATGACAAGCAAAGAACAAA 58.513 30.769 0.00 0.00 0.00 2.83
610 624 7.036996 TGTTGATATGACAAGCAAAGAACAA 57.963 32.000 0.00 0.00 0.00 2.83
611 625 6.631971 TGTTGATATGACAAGCAAAGAACA 57.368 33.333 0.00 0.00 0.00 3.18
612 626 7.558435 CTTGTTGATATGACAAGCAAAGAAC 57.442 36.000 12.93 0.00 45.02 3.01
621 635 5.046376 TGCTCTCCTCTTGTTGATATGACAA 60.046 40.000 2.34 2.34 35.81 3.18
622 636 4.467438 TGCTCTCCTCTTGTTGATATGACA 59.533 41.667 0.00 0.00 0.00 3.58
623 637 5.016051 TGCTCTCCTCTTGTTGATATGAC 57.984 43.478 0.00 0.00 0.00 3.06
624 638 5.883685 ATGCTCTCCTCTTGTTGATATGA 57.116 39.130 0.00 0.00 0.00 2.15
625 639 7.384477 TCATATGCTCTCCTCTTGTTGATATG 58.616 38.462 0.00 0.00 0.00 1.78
626 640 7.550597 TCATATGCTCTCCTCTTGTTGATAT 57.449 36.000 0.00 0.00 0.00 1.63
627 641 6.983906 TCATATGCTCTCCTCTTGTTGATA 57.016 37.500 0.00 0.00 0.00 2.15
628 642 5.883685 TCATATGCTCTCCTCTTGTTGAT 57.116 39.130 0.00 0.00 0.00 2.57
629 643 5.682234 TTCATATGCTCTCCTCTTGTTGA 57.318 39.130 0.00 0.00 0.00 3.18
630 644 6.748333 TTTTCATATGCTCTCCTCTTGTTG 57.252 37.500 0.00 0.00 0.00 3.33
631 645 7.951347 ATTTTTCATATGCTCTCCTCTTGTT 57.049 32.000 0.00 0.00 0.00 2.83
635 649 9.732130 GGTTATATTTTTCATATGCTCTCCTCT 57.268 33.333 0.00 0.00 0.00 3.69
636 650 8.951243 GGGTTATATTTTTCATATGCTCTCCTC 58.049 37.037 0.00 0.00 0.00 3.71
637 651 8.448008 TGGGTTATATTTTTCATATGCTCTCCT 58.552 33.333 0.00 0.00 0.00 3.69
638 652 8.635765 TGGGTTATATTTTTCATATGCTCTCC 57.364 34.615 0.00 0.00 0.00 3.71
672 686 4.083484 CGACCCGTGAGCTAATTTCTTTTT 60.083 41.667 0.00 0.00 0.00 1.94
673 687 3.435671 CGACCCGTGAGCTAATTTCTTTT 59.564 43.478 0.00 0.00 0.00 2.27
674 688 3.000727 CGACCCGTGAGCTAATTTCTTT 58.999 45.455 0.00 0.00 0.00 2.52
675 689 2.618053 CGACCCGTGAGCTAATTTCTT 58.382 47.619 0.00 0.00 0.00 2.52
676 690 1.739371 GCGACCCGTGAGCTAATTTCT 60.739 52.381 0.00 0.00 0.00 2.52
677 691 0.651031 GCGACCCGTGAGCTAATTTC 59.349 55.000 0.00 0.00 0.00 2.17
678 692 0.249398 AGCGACCCGTGAGCTAATTT 59.751 50.000 0.00 0.00 39.74 1.82
679 693 0.179108 GAGCGACCCGTGAGCTAATT 60.179 55.000 0.00 0.00 41.84 1.40
680 694 1.437986 GAGCGACCCGTGAGCTAAT 59.562 57.895 0.00 0.00 41.84 1.73
687 701 3.884581 TTCGTTCGAGCGACCCGTG 62.885 63.158 24.27 0.00 40.85 4.94
689 703 3.170585 GTTCGTTCGAGCGACCCG 61.171 66.667 24.27 2.33 40.85 5.28
897 918 2.582978 GCGGGTACAAGGGAGGAC 59.417 66.667 0.00 0.00 0.00 3.85
918 939 0.171455 CGTGTTCGAGGAAGAGGAGG 59.829 60.000 0.00 0.00 39.71 4.30
993 1014 1.408683 GCTCCAGGTGACATGGCAATA 60.409 52.381 12.08 0.00 37.76 1.90
996 1017 2.352422 GCTCCAGGTGACATGGCA 59.648 61.111 12.08 0.00 37.76 4.92
1100 1121 3.963374 AGGATCTCTTCGATTGATGGTGA 59.037 43.478 0.00 0.00 30.84 4.02
1176 1197 1.541147 TGTTGGTAGTAGAACGACCCG 59.459 52.381 6.85 0.00 42.32 5.28
1221 1242 7.349598 AGTTTCAGCTCTGTTAATCCCATAAT 58.650 34.615 0.00 0.00 0.00 1.28
1491 1512 7.944554 TGTGAAATCTAAGGTCAGAGGAAATTT 59.055 33.333 0.00 0.00 0.00 1.82
1552 1573 5.316987 ACTTTAGAGCTACATGGCAACTTT 58.683 37.500 0.00 0.00 37.61 2.66
1560 1581 4.118410 CTGGCTGACTTTAGAGCTACATG 58.882 47.826 0.00 0.00 35.42 3.21
1561 1582 3.772025 ACTGGCTGACTTTAGAGCTACAT 59.228 43.478 0.00 0.00 35.42 2.29
1597 1618 5.525378 GGGTGTTTACAGAGTCATCATCATC 59.475 44.000 0.00 0.00 0.00 2.92
1598 1619 5.190528 AGGGTGTTTACAGAGTCATCATCAT 59.809 40.000 0.00 0.00 0.00 2.45
1599 1620 4.532126 AGGGTGTTTACAGAGTCATCATCA 59.468 41.667 0.00 0.00 0.00 3.07
1600 1621 5.091261 AGGGTGTTTACAGAGTCATCATC 57.909 43.478 0.00 0.00 0.00 2.92
1601 1622 5.505181 AAGGGTGTTTACAGAGTCATCAT 57.495 39.130 0.00 0.00 0.00 2.45
1602 1623 4.974645 AAGGGTGTTTACAGAGTCATCA 57.025 40.909 0.00 0.00 0.00 3.07
1657 1678 1.468914 GGCGGCCTCTTCTTTAACTTG 59.531 52.381 12.87 0.00 0.00 3.16
2275 2698 4.686191 ATGCACAATCTTAGGAGAGAGG 57.314 45.455 0.00 0.00 34.85 3.69
2323 2746 5.175859 GGAATGTGTCAGTAAAATCCGAGA 58.824 41.667 0.00 0.00 0.00 4.04
2324 2747 4.332819 GGGAATGTGTCAGTAAAATCCGAG 59.667 45.833 0.00 0.00 0.00 4.63
2359 2782 5.893255 CCCCTGAAAAGAATGGTATGAATCA 59.107 40.000 0.00 0.00 0.00 2.57
2365 2788 4.542525 TGGTACCCCTGAAAAGAATGGTAT 59.457 41.667 10.07 0.00 31.57 2.73
2497 2920 4.478206 AGTGCATACTGCTACTGAATGT 57.522 40.909 0.00 0.00 45.31 2.71
2512 2935 6.371548 ACATCGTAAAACTCACATTAGTGCAT 59.628 34.615 0.00 0.00 45.49 3.96
2691 3121 7.496591 CCCAATAAAGATCATTTGGTTTCATGG 59.503 37.037 12.24 7.21 37.50 3.66
2739 3169 3.786635 CAGACAGAAATACCCTTCTCCG 58.213 50.000 0.00 0.00 33.25 4.63
3015 3445 5.299279 ACCTTCATTCTTGTGAAACGAATGT 59.701 36.000 10.03 0.00 41.99 2.71
3120 3550 6.814954 TGCTCTCTCCACTTTAATCCTTAT 57.185 37.500 0.00 0.00 0.00 1.73
3293 3724 9.271828 GTGGAAATGGAAATTTTGTAAGAACAT 57.728 29.630 0.00 0.00 34.97 2.71
3306 3737 4.281688 CAGGTCAAGTGTGGAAATGGAAAT 59.718 41.667 0.00 0.00 0.00 2.17
3350 3781 9.540538 TGGGAATGGAAAATTTGTAAGAATAGA 57.459 29.630 0.00 0.00 0.00 1.98
3351 3782 9.586435 GTGGGAATGGAAAATTTGTAAGAATAG 57.414 33.333 0.00 0.00 0.00 1.73
3354 3785 6.327626 TGGTGGGAATGGAAAATTTGTAAGAA 59.672 34.615 0.00 0.00 0.00 2.52
3355 3786 5.841237 TGGTGGGAATGGAAAATTTGTAAGA 59.159 36.000 0.00 0.00 0.00 2.10
3356 3787 6.107901 TGGTGGGAATGGAAAATTTGTAAG 57.892 37.500 0.00 0.00 0.00 2.34
3359 3790 5.131809 TCTTTGGTGGGAATGGAAAATTTGT 59.868 36.000 0.00 0.00 0.00 2.83
3360 3791 5.619220 TCTTTGGTGGGAATGGAAAATTTG 58.381 37.500 0.00 0.00 0.00 2.32
3362 3793 4.286808 CCTCTTTGGTGGGAATGGAAAATT 59.713 41.667 0.00 0.00 0.00 1.82
3364 3795 3.238597 CCTCTTTGGTGGGAATGGAAAA 58.761 45.455 0.00 0.00 0.00 2.29
3365 3796 2.888212 CCTCTTTGGTGGGAATGGAAA 58.112 47.619 0.00 0.00 0.00 3.13
3367 3798 0.039618 GCCTCTTTGGTGGGAATGGA 59.960 55.000 0.00 0.00 38.35 3.41
3368 3799 0.251742 TGCCTCTTTGGTGGGAATGG 60.252 55.000 0.00 0.00 38.35 3.16
3369 3800 1.180029 CTGCCTCTTTGGTGGGAATG 58.820 55.000 0.00 0.00 38.35 2.67
3371 3802 1.228552 GCTGCCTCTTTGGTGGGAA 60.229 57.895 0.00 0.00 38.35 3.97
3535 4109 9.410556 CATCTTGTTTGAAAATTACCTAAGGTG 57.589 33.333 0.00 0.00 36.19 4.00
3629 4203 9.836076 GTTTGTTGTATGGTAAATCTAGGAAAC 57.164 33.333 0.00 0.00 0.00 2.78
3638 4212 6.377146 CAGGGCTAGTTTGTTGTATGGTAAAT 59.623 38.462 0.00 0.00 0.00 1.40
3703 4277 2.758423 GTTTTTATGCCCACCCCTAGTG 59.242 50.000 0.00 0.00 46.83 2.74
3704 4278 2.291996 GGTTTTTATGCCCACCCCTAGT 60.292 50.000 0.00 0.00 0.00 2.57
3705 4279 2.384828 GGTTTTTATGCCCACCCCTAG 58.615 52.381 0.00 0.00 0.00 3.02
3706 4280 1.341187 CGGTTTTTATGCCCACCCCTA 60.341 52.381 0.00 0.00 0.00 3.53
3707 4281 0.613572 CGGTTTTTATGCCCACCCCT 60.614 55.000 0.00 0.00 0.00 4.79
3708 4282 0.612453 TCGGTTTTTATGCCCACCCC 60.612 55.000 0.00 0.00 0.00 4.95
3709 4283 0.528924 GTCGGTTTTTATGCCCACCC 59.471 55.000 0.00 0.00 0.00 4.61
3710 4284 0.169451 CGTCGGTTTTTATGCCCACC 59.831 55.000 0.00 0.00 0.00 4.61
3711 4285 1.158434 TCGTCGGTTTTTATGCCCAC 58.842 50.000 0.00 0.00 0.00 4.61
3712 4286 1.536331 GTTCGTCGGTTTTTATGCCCA 59.464 47.619 0.00 0.00 0.00 5.36
3713 4287 1.135603 GGTTCGTCGGTTTTTATGCCC 60.136 52.381 0.00 0.00 0.00 5.36
3714 4288 1.464521 CGGTTCGTCGGTTTTTATGCC 60.465 52.381 0.00 0.00 0.00 4.40
3715 4289 1.460359 TCGGTTCGTCGGTTTTTATGC 59.540 47.619 0.00 0.00 0.00 3.14
3716 4290 3.728600 CTTCGGTTCGTCGGTTTTTATG 58.271 45.455 0.00 0.00 0.00 1.90
3717 4291 2.158254 GCTTCGGTTCGTCGGTTTTTAT 59.842 45.455 0.00 0.00 0.00 1.40
3718 4292 1.526464 GCTTCGGTTCGTCGGTTTTTA 59.474 47.619 0.00 0.00 0.00 1.52
3719 4293 0.305617 GCTTCGGTTCGTCGGTTTTT 59.694 50.000 0.00 0.00 0.00 1.94
3720 4294 1.501337 GGCTTCGGTTCGTCGGTTTT 61.501 55.000 0.00 0.00 0.00 2.43
3721 4295 1.957695 GGCTTCGGTTCGTCGGTTT 60.958 57.895 0.00 0.00 0.00 3.27
3722 4296 2.356673 GGCTTCGGTTCGTCGGTT 60.357 61.111 0.00 0.00 0.00 4.44
3723 4297 4.712425 CGGCTTCGGTTCGTCGGT 62.712 66.667 0.00 0.00 0.00 4.69
3724 4298 3.902162 TTCGGCTTCGGTTCGTCGG 62.902 63.158 0.00 0.00 34.13 4.79
3725 4299 1.550659 TTTTCGGCTTCGGTTCGTCG 61.551 55.000 0.00 0.00 34.13 5.12
3726 4300 0.582960 TTTTTCGGCTTCGGTTCGTC 59.417 50.000 0.00 0.00 34.13 4.20
3727 4301 2.692817 TTTTTCGGCTTCGGTTCGT 58.307 47.368 0.00 0.00 34.13 3.85
3749 4323 4.331443 AGCACCAACAAAAACCGAAAATTC 59.669 37.500 0.00 0.00 0.00 2.17
3750 4324 4.257731 AGCACCAACAAAAACCGAAAATT 58.742 34.783 0.00 0.00 0.00 1.82
3751 4325 3.867857 AGCACCAACAAAAACCGAAAAT 58.132 36.364 0.00 0.00 0.00 1.82
3752 4326 3.320673 AGCACCAACAAAAACCGAAAA 57.679 38.095 0.00 0.00 0.00 2.29
3753 4327 3.192844 TGTAGCACCAACAAAAACCGAAA 59.807 39.130 0.00 0.00 0.00 3.46
3754 4328 2.753452 TGTAGCACCAACAAAAACCGAA 59.247 40.909 0.00 0.00 0.00 4.30
3755 4329 2.356382 CTGTAGCACCAACAAAAACCGA 59.644 45.455 0.00 0.00 0.00 4.69
3756 4330 2.098443 ACTGTAGCACCAACAAAAACCG 59.902 45.455 0.00 0.00 0.00 4.44
3757 4331 3.793797 ACTGTAGCACCAACAAAAACC 57.206 42.857 0.00 0.00 0.00 3.27
3758 4332 7.764695 ATTTTACTGTAGCACCAACAAAAAC 57.235 32.000 0.00 0.00 0.00 2.43
3759 4333 7.221067 CGAATTTTACTGTAGCACCAACAAAAA 59.779 33.333 0.00 0.00 0.00 1.94
3760 4334 6.693545 CGAATTTTACTGTAGCACCAACAAAA 59.306 34.615 0.00 0.00 0.00 2.44
3761 4335 6.202937 CGAATTTTACTGTAGCACCAACAAA 58.797 36.000 0.00 0.00 0.00 2.83
3762 4336 5.278071 CCGAATTTTACTGTAGCACCAACAA 60.278 40.000 0.00 0.00 0.00 2.83
3763 4337 4.214545 CCGAATTTTACTGTAGCACCAACA 59.785 41.667 0.00 0.00 0.00 3.33
3764 4338 4.214758 ACCGAATTTTACTGTAGCACCAAC 59.785 41.667 0.00 0.00 0.00 3.77
3765 4339 4.391155 ACCGAATTTTACTGTAGCACCAA 58.609 39.130 0.00 0.00 0.00 3.67
3766 4340 4.010667 ACCGAATTTTACTGTAGCACCA 57.989 40.909 0.00 0.00 0.00 4.17
3767 4341 5.366829 AAACCGAATTTTACTGTAGCACC 57.633 39.130 0.00 0.00 0.00 5.01
3768 4342 5.049267 TGGAAACCGAATTTTACTGTAGCAC 60.049 40.000 0.00 0.00 0.00 4.40
3769 4343 5.064558 TGGAAACCGAATTTTACTGTAGCA 58.935 37.500 0.00 0.00 0.00 3.49
3770 4344 5.180680 ACTGGAAACCGAATTTTACTGTAGC 59.819 40.000 0.00 0.00 0.00 3.58
3771 4345 6.796705 ACTGGAAACCGAATTTTACTGTAG 57.203 37.500 0.00 0.00 0.00 2.74
3772 4346 8.851541 ATAACTGGAAACCGAATTTTACTGTA 57.148 30.769 0.00 0.00 0.00 2.74
3773 4347 7.754851 ATAACTGGAAACCGAATTTTACTGT 57.245 32.000 0.00 0.00 0.00 3.55
3774 4348 8.943002 AGTATAACTGGAAACCGAATTTTACTG 58.057 33.333 0.00 0.00 0.00 2.74
3778 4352 8.733458 GGTTAGTATAACTGGAAACCGAATTTT 58.267 33.333 0.18 0.00 28.28 1.82
3779 4353 7.884354 TGGTTAGTATAACTGGAAACCGAATTT 59.116 33.333 6.00 0.00 37.23 1.82
3780 4354 7.396418 TGGTTAGTATAACTGGAAACCGAATT 58.604 34.615 6.00 0.00 37.23 2.17
3781 4355 6.949715 TGGTTAGTATAACTGGAAACCGAAT 58.050 36.000 6.00 0.00 37.23 3.34
3782 4356 6.357579 TGGTTAGTATAACTGGAAACCGAA 57.642 37.500 6.00 0.00 37.23 4.30
3783 4357 5.999205 TGGTTAGTATAACTGGAAACCGA 57.001 39.130 6.00 0.00 37.23 4.69
3784 4358 7.619964 ATTTGGTTAGTATAACTGGAAACCG 57.380 36.000 6.00 0.00 37.23 4.44
3799 4373 9.257865 CGAACTGTACGAATTAAATTTGGTTAG 57.742 33.333 0.00 0.00 0.00 2.34
3800 4374 8.229137 CCGAACTGTACGAATTAAATTTGGTTA 58.771 33.333 0.00 0.00 0.00 2.85
3801 4375 7.079475 CCGAACTGTACGAATTAAATTTGGTT 58.921 34.615 0.00 0.00 0.00 3.67
3802 4376 6.205270 ACCGAACTGTACGAATTAAATTTGGT 59.795 34.615 0.00 0.00 0.00 3.67
3803 4377 6.604930 ACCGAACTGTACGAATTAAATTTGG 58.395 36.000 0.00 0.00 0.00 3.28
3804 4378 8.496872 AAACCGAACTGTACGAATTAAATTTG 57.503 30.769 0.00 0.00 0.00 2.32
3809 4383 8.868916 GGTATAAAACCGAACTGTACGAATTAA 58.131 33.333 0.00 0.00 38.88 1.40
3810 4384 8.406172 GGTATAAAACCGAACTGTACGAATTA 57.594 34.615 0.00 0.00 38.88 1.40
3811 4385 7.294676 GGTATAAAACCGAACTGTACGAATT 57.705 36.000 0.00 0.00 38.88 2.17
3812 4386 6.892310 GGTATAAAACCGAACTGTACGAAT 57.108 37.500 0.00 0.00 38.88 3.34
3825 4399 7.656707 TCTGTTTCAGTTACGGTATAAAACC 57.343 36.000 0.00 0.00 37.55 3.27
3826 4400 9.373750 GTTTCTGTTTCAGTTACGGTATAAAAC 57.626 33.333 0.00 0.00 32.61 2.43
3827 4401 8.558700 GGTTTCTGTTTCAGTTACGGTATAAAA 58.441 33.333 0.00 0.00 32.61 1.52
3828 4402 7.095691 CGGTTTCTGTTTCAGTTACGGTATAAA 60.096 37.037 0.00 0.00 32.61 1.40
3829 4403 6.365789 CGGTTTCTGTTTCAGTTACGGTATAA 59.634 38.462 0.00 0.00 32.61 0.98
3830 4404 5.863397 CGGTTTCTGTTTCAGTTACGGTATA 59.137 40.000 0.00 0.00 32.61 1.47
3831 4405 4.687483 CGGTTTCTGTTTCAGTTACGGTAT 59.313 41.667 0.00 0.00 32.61 2.73
3832 4406 4.050553 CGGTTTCTGTTTCAGTTACGGTA 58.949 43.478 0.00 0.00 32.61 4.02
3833 4407 2.867975 CGGTTTCTGTTTCAGTTACGGT 59.132 45.455 0.00 0.00 32.61 4.83
3834 4408 3.125316 TCGGTTTCTGTTTCAGTTACGG 58.875 45.455 0.00 0.00 32.61 4.02
3835 4409 4.269363 ACTTCGGTTTCTGTTTCAGTTACG 59.731 41.667 0.00 0.00 32.61 3.18
3836 4410 5.729974 ACTTCGGTTTCTGTTTCAGTTAC 57.270 39.130 0.00 0.00 32.61 2.50
3837 4411 7.496591 ACATTACTTCGGTTTCTGTTTCAGTTA 59.503 33.333 0.00 0.00 32.61 2.24
3838 4412 6.317893 ACATTACTTCGGTTTCTGTTTCAGTT 59.682 34.615 0.00 0.00 32.61 3.16
3839 4413 5.820947 ACATTACTTCGGTTTCTGTTTCAGT 59.179 36.000 0.00 0.00 32.61 3.41
3840 4414 6.018262 TCACATTACTTCGGTTTCTGTTTCAG 60.018 38.462 0.00 0.00 0.00 3.02
3841 4415 5.818336 TCACATTACTTCGGTTTCTGTTTCA 59.182 36.000 0.00 0.00 0.00 2.69
3842 4416 6.295039 TCACATTACTTCGGTTTCTGTTTC 57.705 37.500 0.00 0.00 0.00 2.78
3843 4417 6.347402 CGATCACATTACTTCGGTTTCTGTTT 60.347 38.462 0.00 0.00 0.00 2.83
3844 4418 5.120208 CGATCACATTACTTCGGTTTCTGTT 59.880 40.000 0.00 0.00 0.00 3.16
3845 4419 4.625742 CGATCACATTACTTCGGTTTCTGT 59.374 41.667 0.00 0.00 0.00 3.41
3846 4420 4.625742 ACGATCACATTACTTCGGTTTCTG 59.374 41.667 0.00 0.00 35.98 3.02
3847 4421 4.817517 ACGATCACATTACTTCGGTTTCT 58.182 39.130 0.00 0.00 35.98 2.52
3848 4422 5.574055 TGTACGATCACATTACTTCGGTTTC 59.426 40.000 0.00 0.00 35.98 2.78
3849 4423 5.346822 GTGTACGATCACATTACTTCGGTTT 59.653 40.000 9.11 0.00 38.12 3.27
3850 4424 4.860907 GTGTACGATCACATTACTTCGGTT 59.139 41.667 9.11 0.00 38.12 4.44
3851 4425 4.418392 GTGTACGATCACATTACTTCGGT 58.582 43.478 9.11 0.00 38.12 4.69
3852 4426 3.481028 CGTGTACGATCACATTACTTCGG 59.519 47.826 0.00 0.00 43.02 4.30
3853 4427 3.062059 GCGTGTACGATCACATTACTTCG 60.062 47.826 8.82 0.00 43.02 3.79
3854 4428 3.855379 TGCGTGTACGATCACATTACTTC 59.145 43.478 8.82 0.00 43.02 3.01
3855 4429 3.840468 TGCGTGTACGATCACATTACTT 58.160 40.909 8.82 0.00 43.02 2.24
3856 4430 3.497297 TGCGTGTACGATCACATTACT 57.503 42.857 8.82 0.00 43.02 2.24
3857 4431 4.320491 GTTTGCGTGTACGATCACATTAC 58.680 43.478 8.82 0.00 43.02 1.89
3858 4432 3.368539 GGTTTGCGTGTACGATCACATTA 59.631 43.478 8.82 0.00 43.02 1.90
3859 4433 2.158841 GGTTTGCGTGTACGATCACATT 59.841 45.455 8.82 0.00 43.02 2.71
3860 4434 1.730064 GGTTTGCGTGTACGATCACAT 59.270 47.619 8.82 0.00 43.02 3.21
3861 4435 1.141645 GGTTTGCGTGTACGATCACA 58.858 50.000 8.82 0.00 43.02 3.58
3862 4436 0.092351 CGGTTTGCGTGTACGATCAC 59.908 55.000 8.82 0.00 43.02 3.06
3863 4437 0.039346 TCGGTTTGCGTGTACGATCA 60.039 50.000 8.82 0.00 43.02 2.92
3864 4438 1.062258 TTCGGTTTGCGTGTACGATC 58.938 50.000 8.82 0.00 43.02 3.69
3865 4439 1.717194 ATTCGGTTTGCGTGTACGAT 58.283 45.000 8.82 0.00 43.02 3.73
3866 4440 1.456544 GAATTCGGTTTGCGTGTACGA 59.543 47.619 8.82 0.00 43.02 3.43
3867 4441 1.192757 TGAATTCGGTTTGCGTGTACG 59.807 47.619 0.04 0.00 43.27 3.67
3868 4442 2.953640 TGAATTCGGTTTGCGTGTAC 57.046 45.000 0.04 0.00 0.00 2.90
3869 4443 5.608676 TTTATGAATTCGGTTTGCGTGTA 57.391 34.783 0.04 0.00 0.00 2.90
3870 4444 4.491234 TTTATGAATTCGGTTTGCGTGT 57.509 36.364 0.04 0.00 0.00 4.49
3871 4445 5.814314 TTTTTATGAATTCGGTTTGCGTG 57.186 34.783 0.04 0.00 0.00 5.34
3901 4475 2.354805 GGGCATTCGGTCAGTTTCTACT 60.355 50.000 0.00 0.00 34.00 2.57
3902 4476 2.007608 GGGCATTCGGTCAGTTTCTAC 58.992 52.381 0.00 0.00 0.00 2.59
3903 4477 1.626321 TGGGCATTCGGTCAGTTTCTA 59.374 47.619 0.00 0.00 0.00 2.10
3904 4478 0.400213 TGGGCATTCGGTCAGTTTCT 59.600 50.000 0.00 0.00 0.00 2.52
3905 4479 0.804989 CTGGGCATTCGGTCAGTTTC 59.195 55.000 0.00 0.00 0.00 2.78
3906 4480 0.609131 CCTGGGCATTCGGTCAGTTT 60.609 55.000 0.00 0.00 0.00 2.66
3907 4481 1.002134 CCTGGGCATTCGGTCAGTT 60.002 57.895 0.00 0.00 0.00 3.16
3908 4482 2.671070 CCTGGGCATTCGGTCAGT 59.329 61.111 0.00 0.00 0.00 3.41
3909 4483 2.825836 GCCTGGGCATTCGGTCAG 60.826 66.667 6.75 0.00 41.49 3.51
3910 4484 4.424711 GGCCTGGGCATTCGGTCA 62.425 66.667 16.34 0.00 44.11 4.02
3911 4485 2.742116 TAGGCCTGGGCATTCGGTC 61.742 63.158 23.25 0.00 44.11 4.79
3912 4486 2.690881 TAGGCCTGGGCATTCGGT 60.691 61.111 23.25 2.65 44.11 4.69
3913 4487 2.203209 GTAGGCCTGGGCATTCGG 60.203 66.667 23.25 0.00 44.11 4.30
3914 4488 1.524621 CAGTAGGCCTGGGCATTCG 60.525 63.158 23.25 4.23 44.11 3.34
3915 4489 0.034089 AACAGTAGGCCTGGGCATTC 60.034 55.000 23.25 11.57 46.06 2.67
3916 4490 0.034089 GAACAGTAGGCCTGGGCATT 60.034 55.000 23.25 5.04 46.06 3.56
3917 4491 1.207488 TGAACAGTAGGCCTGGGCAT 61.207 55.000 23.25 10.44 46.06 4.40
3918 4492 1.845664 TGAACAGTAGGCCTGGGCA 60.846 57.895 23.25 5.66 46.06 5.36
3919 4493 1.377333 GTGAACAGTAGGCCTGGGC 60.377 63.158 17.99 13.15 46.06 5.36
3920 4494 0.036010 CAGTGAACAGTAGGCCTGGG 60.036 60.000 17.99 7.09 46.06 4.45
3921 4495 0.674895 GCAGTGAACAGTAGGCCTGG 60.675 60.000 17.99 7.50 46.06 4.45
3923 4497 0.322975 CAGCAGTGAACAGTAGGCCT 59.677 55.000 11.78 11.78 0.00 5.19
3924 4498 1.301677 GCAGCAGTGAACAGTAGGCC 61.302 60.000 0.00 0.00 0.00 5.19
3925 4499 0.603707 TGCAGCAGTGAACAGTAGGC 60.604 55.000 0.00 0.00 0.00 3.93
3926 4500 1.270518 ACTGCAGCAGTGAACAGTAGG 60.271 52.381 27.73 0.00 43.63 3.18
3927 4501 2.160822 ACTGCAGCAGTGAACAGTAG 57.839 50.000 27.73 0.00 43.63 2.57
3928 4502 2.483876 GAACTGCAGCAGTGAACAGTA 58.516 47.619 28.91 0.00 44.62 2.74
3973 4547 1.081509 CCACCGACCAACGCATTTG 60.082 57.895 0.00 0.00 41.07 2.32
4377 4951 0.460109 CGGCATGTCCAAGACGATGA 60.460 55.000 6.92 0.00 34.95 2.92
4524 5115 0.681564 TTGTTTGGGTCGCACTTGGT 60.682 50.000 0.00 0.00 0.00 3.67
4607 5198 4.323477 CGAGCACCGGGGGAAACA 62.323 66.667 5.47 0.00 33.91 2.83
4637 5229 2.191375 CGCTGTCATGGCCCAGAT 59.809 61.111 10.58 0.00 0.00 2.90
4718 5322 2.359975 GGGTTCTGGTCTTGGGCG 60.360 66.667 0.00 0.00 0.00 6.13
5187 5826 4.016790 AGGCTGCCTCCTCCCTCA 62.017 66.667 17.22 0.00 0.00 3.86
5369 6012 1.610038 TGCCAACTCACTGCAGATTTG 59.390 47.619 23.35 15.90 0.00 2.32
5370 6013 1.985473 TGCCAACTCACTGCAGATTT 58.015 45.000 23.35 4.37 0.00 2.17
5371 6014 2.089980 GATGCCAACTCACTGCAGATT 58.910 47.619 23.35 6.09 38.58 2.40
5372 6015 1.681166 GGATGCCAACTCACTGCAGAT 60.681 52.381 23.35 1.19 38.58 2.90
5373 6016 0.321919 GGATGCCAACTCACTGCAGA 60.322 55.000 23.35 0.00 38.58 4.26
5374 6017 0.607217 TGGATGCCAACTCACTGCAG 60.607 55.000 13.48 13.48 38.58 4.41
5375 6018 0.607217 CTGGATGCCAACTCACTGCA 60.607 55.000 0.00 0.00 39.68 4.41
5376 6019 0.321919 TCTGGATGCCAACTCACTGC 60.322 55.000 0.00 0.00 30.80 4.40
5377 6020 2.286872 GATCTGGATGCCAACTCACTG 58.713 52.381 0.00 0.00 30.80 3.66
5378 6021 1.211457 GGATCTGGATGCCAACTCACT 59.789 52.381 0.00 0.00 30.80 3.41
5379 6022 1.211457 AGGATCTGGATGCCAACTCAC 59.789 52.381 0.00 0.00 30.80 3.51
5380 6023 1.588239 AGGATCTGGATGCCAACTCA 58.412 50.000 0.00 0.00 30.80 3.41
5381 6024 2.968574 TCTAGGATCTGGATGCCAACTC 59.031 50.000 0.00 0.00 30.80 3.01
5382 6025 3.051940 TCTAGGATCTGGATGCCAACT 57.948 47.619 0.00 0.00 30.80 3.16
5383 6026 5.669477 GATATCTAGGATCTGGATGCCAAC 58.331 45.833 4.39 0.00 33.80 3.77
5384 6027 4.403752 CGATATCTAGGATCTGGATGCCAA 59.596 45.833 0.34 0.00 33.80 4.52
5385 6028 3.956848 CGATATCTAGGATCTGGATGCCA 59.043 47.826 0.34 0.00 33.80 4.92
5386 6029 3.957497 ACGATATCTAGGATCTGGATGCC 59.043 47.826 0.34 0.00 33.80 4.40
5387 6030 5.590530 AACGATATCTAGGATCTGGATGC 57.409 43.478 0.34 0.00 33.80 3.91
5428 6071 1.974957 TCAAACCTCACAGGAATCCGA 59.025 47.619 0.00 0.00 37.67 4.55
5561 6204 6.709846 AGAGTATCGGCGTTAGTCTAGTTTAT 59.290 38.462 25.90 7.74 42.67 1.40
5576 6219 4.957759 TTTGGCTTTTAAGAGTATCGGC 57.042 40.909 0.00 0.00 42.67 5.54
5578 6221 6.345920 ACGATTTGGCTTTTAAGAGTATCG 57.654 37.500 14.30 14.30 42.67 2.92
5617 6261 3.963383 AAAACTCAGTACAAAGGTGCG 57.037 42.857 0.00 0.00 34.50 5.34
5711 6355 0.882042 GCTCCACCACATGATAGCCG 60.882 60.000 0.00 0.00 33.35 5.52
5845 6489 1.759445 AGATGTTCCCAGTCGGATGAG 59.241 52.381 0.00 0.00 41.63 2.90
5868 6512 4.696479 ATGCTAAGGTGCTAAGCTACAT 57.304 40.909 0.00 0.00 37.16 2.29
5874 6518 9.712305 AGTAATGTTATATGCTAAGGTGCTAAG 57.288 33.333 0.00 0.00 0.00 2.18
5876 6520 8.027189 CGAGTAATGTTATATGCTAAGGTGCTA 58.973 37.037 0.00 0.00 0.00 3.49
5919 6563 8.715191 TTGGCAAAAATTATAAGCATTACAGG 57.285 30.769 0.00 0.00 30.46 4.00
5920 6564 9.369904 ACTTGGCAAAAATTATAAGCATTACAG 57.630 29.630 0.00 0.00 30.46 2.74
5953 6597 7.985476 TGTCAGCCTAAATATTCTAAACAAGC 58.015 34.615 0.00 0.00 0.00 4.01
5977 6621 6.641723 TGAACATGTAATTGTGTTGCTTCATG 59.358 34.615 0.00 0.00 38.57 3.07
5991 6635 7.839907 ACAAATTGGCATACTGAACATGTAAT 58.160 30.769 0.00 0.00 0.00 1.89
6016 6660 7.755822 GGCAATAATTTGTTACGACAACCAATA 59.244 33.333 0.00 0.00 45.01 1.90
6197 6843 6.456447 TTCAAACGTCAACTTATTAGTCCG 57.544 37.500 0.00 0.00 31.99 4.79
6376 7022 4.062293 TCACTGAAAATTCCAGTACACCG 58.938 43.478 11.60 2.54 42.44 4.94
6673 7336 1.737355 GCTCAAACTGTGCTGCCCAA 61.737 55.000 0.00 0.00 34.37 4.12
6829 7492 0.174845 CGTGGAGATTCGGGTGCTTA 59.825 55.000 0.00 0.00 0.00 3.09
6864 7527 6.569780 TGGCAGTAAGAAAAGAAGAAAAACC 58.430 36.000 0.00 0.00 0.00 3.27
6875 7538 3.758554 GGCTGAGAATGGCAGTAAGAAAA 59.241 43.478 0.00 0.00 35.81 2.29
6916 7579 7.472543 CAATAGATTTTGCCGTAACTAGCTTT 58.527 34.615 0.00 0.00 0.00 3.51
6917 7580 6.458342 GCAATAGATTTTGCCGTAACTAGCTT 60.458 38.462 0.00 0.00 44.94 3.74
6918 7581 5.007724 GCAATAGATTTTGCCGTAACTAGCT 59.992 40.000 0.00 0.00 44.94 3.32
6919 7582 5.205565 GCAATAGATTTTGCCGTAACTAGC 58.794 41.667 0.00 0.00 44.94 3.42
6987 7653 7.217200 TCTCAAAGTTAGGAAATGGATATCCG 58.783 38.462 17.04 0.00 40.78 4.18
6988 7654 9.225436 GATCTCAAAGTTAGGAAATGGATATCC 57.775 37.037 15.39 15.39 35.88 2.59
6989 7655 9.784531 TGATCTCAAAGTTAGGAAATGGATATC 57.215 33.333 0.00 0.00 0.00 1.63
6991 7657 9.973661 TTTGATCTCAAAGTTAGGAAATGGATA 57.026 29.630 1.28 0.00 40.55 2.59
6992 7658 8.884124 TTTGATCTCAAAGTTAGGAAATGGAT 57.116 30.769 1.28 0.00 40.55 3.41
7034 7700 2.439880 GCTACATAAAGGGGAGGCTTCT 59.560 50.000 0.00 0.00 0.00 2.85
7210 7879 1.899814 TGCCACACCTACTACTTCCAG 59.100 52.381 0.00 0.00 0.00 3.86
7223 7892 3.438781 TCGTTTCTAAATCCATGCCACAC 59.561 43.478 0.00 0.00 0.00 3.82
7226 7895 2.675844 CGTCGTTTCTAAATCCATGCCA 59.324 45.455 0.00 0.00 0.00 4.92
7247 7916 3.184379 GGCAACTTGAAGAAATTTTCCGC 59.816 43.478 0.00 0.00 0.00 5.54
7248 7917 4.972286 GGCAACTTGAAGAAATTTTCCG 57.028 40.909 0.00 0.00 0.00 4.30
7283 7952 4.471548 TGGTTCTTTTGATTAAACCGGGA 58.528 39.130 6.32 0.00 43.31 5.14
7388 8083 1.696063 AAACTTGCTGCCATCACTGT 58.304 45.000 0.00 0.00 0.00 3.55
7413 8108 7.649533 AATTCTTGCCATCACTCATCATAAA 57.350 32.000 0.00 0.00 0.00 1.40
7414 8109 7.339976 TGAAATTCTTGCCATCACTCATCATAA 59.660 33.333 0.00 0.00 0.00 1.90
7415 8110 6.829811 TGAAATTCTTGCCATCACTCATCATA 59.170 34.615 0.00 0.00 0.00 2.15
7416 8111 5.655090 TGAAATTCTTGCCATCACTCATCAT 59.345 36.000 0.00 0.00 0.00 2.45
7505 8206 3.897239 ACTTGTGTCAAACTCCAATCCA 58.103 40.909 0.00 0.00 0.00 3.41
7507 8208 6.381801 CCATAACTTGTGTCAAACTCCAATC 58.618 40.000 0.00 0.00 0.00 2.67
7525 8226 2.695359 TGGAAACTCTGACGCCATAAC 58.305 47.619 0.00 0.00 0.00 1.89
7559 8260 5.745514 TGTAGAAGATATCGAGTGCGTAAC 58.254 41.667 0.00 0.00 38.98 2.50
7595 8296 9.722184 CATGTAGTACTCCTACTAGTAGCATTA 57.278 37.037 22.39 5.66 45.36 1.90
7596 8297 8.438373 TCATGTAGTACTCCTACTAGTAGCATT 58.562 37.037 22.39 6.66 45.36 3.56
7639 8342 0.940126 CCATGAGAGGCGTGCAATAC 59.060 55.000 0.00 0.00 31.94 1.89
7702 8405 6.627087 TCAGTTAGGGATTCACTTGATCTT 57.373 37.500 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.