Multiple sequence alignment - TraesCS2A01G225000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G225000 chr2A 100.000 3068 0 0 1 3068 227629396 227632463 0.000000e+00 5666
1 TraesCS2A01G225000 chr2D 97.441 2462 60 3 215 2675 202078736 202081195 0.000000e+00 4194
2 TraesCS2A01G225000 chr2D 95.527 313 9 1 2761 3068 202081673 202081985 2.120000e-136 496
3 TraesCS2A01G225000 chr2B 94.977 2389 71 16 714 3068 378989160 378991533 0.000000e+00 3701
4 TraesCS2A01G225000 chr2B 93.282 387 15 6 322 701 378988432 378988814 7.430000e-156 560
5 TraesCS2A01G225000 chr5A 93.373 166 11 0 52 217 32509676 32509841 2.360000e-61 246
6 TraesCS2A01G225000 chr1B 92.899 169 12 0 52 220 189871212 189871044 2.360000e-61 246
7 TraesCS2A01G225000 chr5B 92.262 168 13 0 52 219 652877130 652876963 3.950000e-59 239
8 TraesCS2A01G225000 chr3B 91.617 167 14 0 53 219 657540275 657540441 6.620000e-57 231
9 TraesCS2A01G225000 chr3B 83.648 159 24 2 63 220 752233864 752233707 6.850000e-32 148
10 TraesCS2A01G225000 chr7A 94.643 112 6 0 112 223 560994319 560994208 1.130000e-39 174
11 TraesCS2A01G225000 chr7B 86.538 156 20 1 65 219 720066078 720066233 1.460000e-38 171
12 TraesCS2A01G225000 chr7B 85.897 156 21 1 63 217 642555692 642555847 6.810000e-37 165
13 TraesCS2A01G225000 chr5D 84.615 156 22 2 66 220 444977949 444977795 1.470000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G225000 chr2A 227629396 227632463 3067 False 5666.0 5666 100.0000 1 3068 1 chr2A.!!$F1 3067
1 TraesCS2A01G225000 chr2D 202078736 202081985 3249 False 2345.0 4194 96.4840 215 3068 2 chr2D.!!$F1 2853
2 TraesCS2A01G225000 chr2B 378988432 378991533 3101 False 2130.5 3701 94.1295 322 3068 2 chr2B.!!$F1 2746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.029567 CCTCTCGAGCGGTCATACAC 59.970 60.0 13.50 0.0 0.00 2.90 F
23 24 0.029567 CTCTCGAGCGGTCATACACC 59.970 60.0 15.89 0.0 42.69 4.16 F
109 110 0.034616 CCATTCTGATCGAGGAGGCC 59.965 60.0 0.00 0.0 0.00 5.19 F
170 171 0.102481 CTGGACCATCCGAACCTACG 59.898 60.0 0.00 0.0 40.17 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1513 1858 1.010125 CAAGGACAACGCCAACACG 60.010 57.895 0.00 0.0 39.50 4.49 R
1753 2098 1.153608 CTCGCTGATGCAGAGCAGT 60.154 57.895 17.99 0.0 43.65 4.40 R
2060 2405 4.025401 CGCCGCCAACTCAACCAC 62.025 66.667 0.00 0.0 0.00 4.16 R
2378 2733 1.416030 TGCCACTGTGCTCTGTTTCTA 59.584 47.619 1.29 0.0 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.282958 AACCCTCTCGAGCGGTCA 60.283 61.111 19.70 1.05 33.01 4.02
18 19 1.682684 AACCCTCTCGAGCGGTCAT 60.683 57.895 19.70 5.46 33.01 3.06
19 20 0.395311 AACCCTCTCGAGCGGTCATA 60.395 55.000 19.70 0.70 33.01 2.15
20 21 1.102222 ACCCTCTCGAGCGGTCATAC 61.102 60.000 19.70 0.00 29.73 2.39
21 22 1.101635 CCCTCTCGAGCGGTCATACA 61.102 60.000 19.70 0.00 0.00 2.29
22 23 0.029567 CCTCTCGAGCGGTCATACAC 59.970 60.000 13.50 0.00 0.00 2.90
23 24 0.029567 CTCTCGAGCGGTCATACACC 59.970 60.000 15.89 0.00 42.69 4.16
31 32 2.763651 GGTCATACACCGTCAAGCC 58.236 57.895 0.00 0.00 34.56 4.35
32 33 0.249398 GGTCATACACCGTCAAGCCT 59.751 55.000 0.00 0.00 34.56 4.58
33 34 1.479323 GGTCATACACCGTCAAGCCTA 59.521 52.381 0.00 0.00 34.56 3.93
34 35 2.093869 GGTCATACACCGTCAAGCCTAA 60.094 50.000 0.00 0.00 34.56 2.69
35 36 3.592059 GTCATACACCGTCAAGCCTAAA 58.408 45.455 0.00 0.00 0.00 1.85
36 37 3.998341 GTCATACACCGTCAAGCCTAAAA 59.002 43.478 0.00 0.00 0.00 1.52
37 38 3.998341 TCATACACCGTCAAGCCTAAAAC 59.002 43.478 0.00 0.00 0.00 2.43
38 39 2.335316 ACACCGTCAAGCCTAAAACA 57.665 45.000 0.00 0.00 0.00 2.83
39 40 2.645802 ACACCGTCAAGCCTAAAACAA 58.354 42.857 0.00 0.00 0.00 2.83
40 41 2.616842 ACACCGTCAAGCCTAAAACAAG 59.383 45.455 0.00 0.00 0.00 3.16
41 42 2.031157 CACCGTCAAGCCTAAAACAAGG 60.031 50.000 0.00 0.00 39.87 3.61
42 43 2.227194 CCGTCAAGCCTAAAACAAGGT 58.773 47.619 0.00 0.00 39.02 3.50
43 44 2.225727 CCGTCAAGCCTAAAACAAGGTC 59.774 50.000 0.00 0.00 39.02 3.85
44 45 2.875933 CGTCAAGCCTAAAACAAGGTCA 59.124 45.455 0.00 0.00 39.02 4.02
45 46 3.502211 CGTCAAGCCTAAAACAAGGTCAT 59.498 43.478 0.00 0.00 39.02 3.06
46 47 4.693566 CGTCAAGCCTAAAACAAGGTCATA 59.306 41.667 0.00 0.00 39.02 2.15
47 48 5.354234 CGTCAAGCCTAAAACAAGGTCATAT 59.646 40.000 0.00 0.00 39.02 1.78
48 49 6.128007 CGTCAAGCCTAAAACAAGGTCATATT 60.128 38.462 0.00 0.00 39.02 1.28
49 50 7.574967 CGTCAAGCCTAAAACAAGGTCATATTT 60.575 37.037 0.00 0.00 39.02 1.40
50 51 8.088365 GTCAAGCCTAAAACAAGGTCATATTTT 58.912 33.333 0.00 0.00 39.02 1.82
51 52 8.087750 TCAAGCCTAAAACAAGGTCATATTTTG 58.912 33.333 0.00 0.00 39.02 2.44
52 53 6.935167 AGCCTAAAACAAGGTCATATTTTGG 58.065 36.000 0.00 0.00 39.02 3.28
53 54 6.070824 AGCCTAAAACAAGGTCATATTTTGGG 60.071 38.462 6.39 6.39 42.46 4.12
54 55 6.071051 GCCTAAAACAAGGTCATATTTTGGGA 60.071 38.462 13.03 0.00 42.27 4.37
55 56 7.364673 GCCTAAAACAAGGTCATATTTTGGGAT 60.365 37.037 13.03 0.00 42.27 3.85
56 57 7.981225 CCTAAAACAAGGTCATATTTTGGGATG 59.019 37.037 5.11 0.00 42.27 3.51
57 58 6.933514 AAACAAGGTCATATTTTGGGATGT 57.066 33.333 0.00 0.00 0.00 3.06
58 59 6.530019 AACAAGGTCATATTTTGGGATGTC 57.470 37.500 0.00 0.00 0.00 3.06
59 60 5.579047 ACAAGGTCATATTTTGGGATGTCA 58.421 37.500 0.00 0.00 0.00 3.58
60 61 5.418840 ACAAGGTCATATTTTGGGATGTCAC 59.581 40.000 0.00 0.00 0.00 3.67
61 62 4.199310 AGGTCATATTTTGGGATGTCACG 58.801 43.478 0.00 0.00 0.00 4.35
62 63 3.243068 GGTCATATTTTGGGATGTCACGC 60.243 47.826 0.00 0.00 0.00 5.34
63 64 3.627577 GTCATATTTTGGGATGTCACGCT 59.372 43.478 0.00 0.00 0.00 5.07
64 65 3.627123 TCATATTTTGGGATGTCACGCTG 59.373 43.478 0.00 0.00 0.00 5.18
65 66 1.176527 ATTTTGGGATGTCACGCTGG 58.823 50.000 0.00 0.00 0.00 4.85
66 67 1.523154 TTTTGGGATGTCACGCTGGC 61.523 55.000 0.00 0.00 0.00 4.85
67 68 2.410322 TTTGGGATGTCACGCTGGCT 62.410 55.000 0.00 0.00 0.00 4.75
68 69 1.549243 TTGGGATGTCACGCTGGCTA 61.549 55.000 0.00 0.00 0.00 3.93
69 70 1.227380 GGGATGTCACGCTGGCTAG 60.227 63.158 0.00 0.00 0.00 3.42
70 71 1.884926 GGATGTCACGCTGGCTAGC 60.885 63.158 12.81 12.81 46.62 3.42
80 81 2.121291 GCTGGCTAGCTTTTTCCTCT 57.879 50.000 15.78 0.00 46.57 3.69
81 82 2.013400 GCTGGCTAGCTTTTTCCTCTC 58.987 52.381 15.78 0.00 46.57 3.20
82 83 2.355615 GCTGGCTAGCTTTTTCCTCTCT 60.356 50.000 15.78 0.00 46.57 3.10
83 84 3.871851 GCTGGCTAGCTTTTTCCTCTCTT 60.872 47.826 15.78 0.00 46.57 2.85
84 85 4.331108 CTGGCTAGCTTTTTCCTCTCTTT 58.669 43.478 15.72 0.00 0.00 2.52
85 86 4.729868 TGGCTAGCTTTTTCCTCTCTTTT 58.270 39.130 15.72 0.00 0.00 2.27
86 87 4.762251 TGGCTAGCTTTTTCCTCTCTTTTC 59.238 41.667 15.72 0.00 0.00 2.29
87 88 4.156922 GGCTAGCTTTTTCCTCTCTTTTCC 59.843 45.833 15.72 0.00 0.00 3.13
88 89 5.007034 GCTAGCTTTTTCCTCTCTTTTCCT 58.993 41.667 7.70 0.00 0.00 3.36
89 90 5.106357 GCTAGCTTTTTCCTCTCTTTTCCTG 60.106 44.000 7.70 0.00 0.00 3.86
90 91 3.571828 AGCTTTTTCCTCTCTTTTCCTGC 59.428 43.478 0.00 0.00 0.00 4.85
91 92 3.305676 GCTTTTTCCTCTCTTTTCCTGCC 60.306 47.826 0.00 0.00 0.00 4.85
92 93 3.593442 TTTTCCTCTCTTTTCCTGCCA 57.407 42.857 0.00 0.00 0.00 4.92
93 94 3.814504 TTTCCTCTCTTTTCCTGCCAT 57.185 42.857 0.00 0.00 0.00 4.40
94 95 3.814504 TTCCTCTCTTTTCCTGCCATT 57.185 42.857 0.00 0.00 0.00 3.16
95 96 3.356529 TCCTCTCTTTTCCTGCCATTC 57.643 47.619 0.00 0.00 0.00 2.67
96 97 2.915604 TCCTCTCTTTTCCTGCCATTCT 59.084 45.455 0.00 0.00 0.00 2.40
97 98 3.015327 CCTCTCTTTTCCTGCCATTCTG 58.985 50.000 0.00 0.00 0.00 3.02
98 99 3.307975 CCTCTCTTTTCCTGCCATTCTGA 60.308 47.826 0.00 0.00 0.00 3.27
99 100 4.525024 CTCTCTTTTCCTGCCATTCTGAT 58.475 43.478 0.00 0.00 0.00 2.90
100 101 4.521146 TCTCTTTTCCTGCCATTCTGATC 58.479 43.478 0.00 0.00 0.00 2.92
101 102 3.273434 TCTTTTCCTGCCATTCTGATCG 58.727 45.455 0.00 0.00 0.00 3.69
102 103 3.055167 TCTTTTCCTGCCATTCTGATCGA 60.055 43.478 0.00 0.00 0.00 3.59
103 104 2.609427 TTCCTGCCATTCTGATCGAG 57.391 50.000 0.00 0.00 0.00 4.04
104 105 0.755079 TCCTGCCATTCTGATCGAGG 59.245 55.000 0.00 0.00 0.00 4.63
105 106 0.755079 CCTGCCATTCTGATCGAGGA 59.245 55.000 0.00 0.00 0.00 3.71
106 107 1.270199 CCTGCCATTCTGATCGAGGAG 60.270 57.143 0.00 0.00 0.00 3.69
107 108 0.755079 TGCCATTCTGATCGAGGAGG 59.245 55.000 0.00 0.00 0.00 4.30
108 109 0.602372 GCCATTCTGATCGAGGAGGC 60.602 60.000 0.00 3.08 0.00 4.70
109 110 0.034616 CCATTCTGATCGAGGAGGCC 59.965 60.000 0.00 0.00 0.00 5.19
110 111 0.319383 CATTCTGATCGAGGAGGCCG 60.319 60.000 0.00 0.00 0.00 6.13
111 112 1.467678 ATTCTGATCGAGGAGGCCGG 61.468 60.000 0.00 0.00 0.00 6.13
112 113 2.835431 CTGATCGAGGAGGCCGGT 60.835 66.667 1.90 0.00 0.00 5.28
113 114 2.363795 TGATCGAGGAGGCCGGTT 60.364 61.111 1.90 0.00 0.00 4.44
114 115 2.356818 CTGATCGAGGAGGCCGGTTC 62.357 65.000 1.90 0.75 0.00 3.62
115 116 2.042843 ATCGAGGAGGCCGGTTCT 60.043 61.111 1.90 0.22 0.00 3.01
116 117 1.677637 GATCGAGGAGGCCGGTTCTT 61.678 60.000 1.90 0.00 0.00 2.52
117 118 1.677637 ATCGAGGAGGCCGGTTCTTC 61.678 60.000 1.90 6.73 0.00 2.87
118 119 2.352032 CGAGGAGGCCGGTTCTTCT 61.352 63.158 1.90 5.27 0.00 2.85
119 120 1.219393 GAGGAGGCCGGTTCTTCTG 59.781 63.158 11.69 0.00 0.00 3.02
120 121 2.436824 GGAGGCCGGTTCTTCTGC 60.437 66.667 1.90 0.00 0.00 4.26
121 122 2.347490 GAGGCCGGTTCTTCTGCA 59.653 61.111 1.90 0.00 0.00 4.41
122 123 1.302511 GAGGCCGGTTCTTCTGCAA 60.303 57.895 1.90 0.00 0.00 4.08
123 124 1.301677 GAGGCCGGTTCTTCTGCAAG 61.302 60.000 1.90 0.00 0.00 4.01
124 125 1.302511 GGCCGGTTCTTCTGCAAGA 60.303 57.895 1.90 0.00 44.68 3.02
134 135 2.918571 TCTGCAAGAGACCGCTTTG 58.081 52.632 0.00 0.00 38.67 2.77
135 136 0.603707 TCTGCAAGAGACCGCTTTGG 60.604 55.000 0.00 0.00 38.67 3.28
136 137 2.192608 CTGCAAGAGACCGCTTTGGC 62.193 60.000 0.00 0.00 37.44 4.52
137 138 2.982744 GCAAGAGACCGCTTTGGCC 61.983 63.158 0.00 0.00 43.94 5.36
138 139 1.302832 CAAGAGACCGCTTTGGCCT 60.303 57.895 3.32 0.00 43.94 5.19
139 140 1.302832 AAGAGACCGCTTTGGCCTG 60.303 57.895 3.32 0.00 43.94 4.85
140 141 3.435186 GAGACCGCTTTGGCCTGC 61.435 66.667 3.32 5.00 43.94 4.85
141 142 4.269523 AGACCGCTTTGGCCTGCA 62.270 61.111 3.32 0.00 43.94 4.41
142 143 3.294493 GACCGCTTTGGCCTGCAA 61.294 61.111 3.32 0.00 43.94 4.08
143 144 3.273080 GACCGCTTTGGCCTGCAAG 62.273 63.158 3.32 4.86 43.94 4.01
144 145 4.729856 CCGCTTTGGCCTGCAAGC 62.730 66.667 19.41 19.41 41.79 4.01
145 146 3.980989 CGCTTTGGCCTGCAAGCA 61.981 61.111 25.23 0.00 44.88 3.91
146 147 2.048503 GCTTTGGCCTGCAAGCAG 60.049 61.111 22.63 14.91 44.18 4.24
147 148 2.048503 CTTTGGCCTGCAAGCAGC 60.049 61.111 16.33 11.40 42.35 5.25
161 162 3.837578 CAGCATGCTGGACCATCC 58.162 61.111 35.39 0.00 40.17 3.51
162 163 2.184830 CAGCATGCTGGACCATCCG 61.185 63.158 35.39 10.51 40.17 4.18
163 164 2.190313 GCATGCTGGACCATCCGA 59.810 61.111 11.37 0.00 40.17 4.55
164 165 1.451927 GCATGCTGGACCATCCGAA 60.452 57.895 11.37 0.00 40.17 4.30
165 166 1.718757 GCATGCTGGACCATCCGAAC 61.719 60.000 11.37 0.00 40.17 3.95
166 167 1.097547 CATGCTGGACCATCCGAACC 61.098 60.000 0.00 0.00 40.17 3.62
167 168 1.274703 ATGCTGGACCATCCGAACCT 61.275 55.000 0.00 0.00 40.17 3.50
168 169 0.616395 TGCTGGACCATCCGAACCTA 60.616 55.000 0.00 0.00 40.17 3.08
169 170 0.179081 GCTGGACCATCCGAACCTAC 60.179 60.000 0.00 0.00 40.17 3.18
170 171 0.102481 CTGGACCATCCGAACCTACG 59.898 60.000 0.00 0.00 40.17 3.51
171 172 0.612732 TGGACCATCCGAACCTACGT 60.613 55.000 0.00 0.00 40.17 3.57
172 173 0.179119 GGACCATCCGAACCTACGTG 60.179 60.000 0.00 0.00 0.00 4.49
173 174 0.529378 GACCATCCGAACCTACGTGT 59.471 55.000 0.00 0.00 0.00 4.49
174 175 1.745087 GACCATCCGAACCTACGTGTA 59.255 52.381 0.00 0.00 0.00 2.90
175 176 2.360165 GACCATCCGAACCTACGTGTAT 59.640 50.000 0.00 0.00 0.00 2.29
176 177 3.554934 ACCATCCGAACCTACGTGTATA 58.445 45.455 0.00 0.00 0.00 1.47
177 178 3.567164 ACCATCCGAACCTACGTGTATAG 59.433 47.826 0.00 0.00 0.00 1.31
178 179 3.562505 CATCCGAACCTACGTGTATAGC 58.437 50.000 0.00 0.00 0.00 2.97
179 180 2.923121 TCCGAACCTACGTGTATAGCT 58.077 47.619 0.00 0.00 0.00 3.32
180 181 2.615447 TCCGAACCTACGTGTATAGCTG 59.385 50.000 0.00 0.00 0.00 4.24
181 182 2.615447 CCGAACCTACGTGTATAGCTGA 59.385 50.000 0.00 0.00 0.00 4.26
182 183 3.065786 CCGAACCTACGTGTATAGCTGAA 59.934 47.826 0.00 0.00 0.00 3.02
183 184 4.280461 CGAACCTACGTGTATAGCTGAAG 58.720 47.826 0.00 0.00 0.00 3.02
184 185 3.712091 ACCTACGTGTATAGCTGAAGC 57.288 47.619 0.00 0.00 42.49 3.86
185 186 3.021695 ACCTACGTGTATAGCTGAAGCA 58.978 45.455 4.90 0.00 45.16 3.91
186 187 3.181489 ACCTACGTGTATAGCTGAAGCAC 60.181 47.826 4.90 0.00 45.16 4.40
187 188 2.295253 ACGTGTATAGCTGAAGCACC 57.705 50.000 4.90 0.00 45.16 5.01
188 189 1.548719 ACGTGTATAGCTGAAGCACCA 59.451 47.619 4.90 0.00 45.16 4.17
189 190 1.927174 CGTGTATAGCTGAAGCACCAC 59.073 52.381 4.90 4.69 45.16 4.16
190 191 2.417379 CGTGTATAGCTGAAGCACCACT 60.417 50.000 4.90 0.00 45.16 4.00
191 192 3.190874 GTGTATAGCTGAAGCACCACTC 58.809 50.000 4.90 0.00 45.16 3.51
192 193 2.168521 TGTATAGCTGAAGCACCACTCC 59.831 50.000 4.90 0.00 45.16 3.85
193 194 1.279496 ATAGCTGAAGCACCACTCCA 58.721 50.000 4.90 0.00 45.16 3.86
194 195 0.321671 TAGCTGAAGCACCACTCCAC 59.678 55.000 4.90 0.00 45.16 4.02
195 196 2.320587 GCTGAAGCACCACTCCACG 61.321 63.158 0.00 0.00 41.59 4.94
196 197 1.669115 CTGAAGCACCACTCCACGG 60.669 63.158 0.00 0.00 0.00 4.94
197 198 2.383245 CTGAAGCACCACTCCACGGT 62.383 60.000 0.00 0.00 37.16 4.83
207 208 2.350895 TCCACGGTGGAGCATTGG 59.649 61.111 25.53 0.00 42.67 3.16
208 209 3.443045 CCACGGTGGAGCATTGGC 61.443 66.667 22.77 0.00 40.96 4.52
209 210 3.443045 CACGGTGGAGCATTGGCC 61.443 66.667 0.00 0.00 42.56 5.36
210 211 3.965258 ACGGTGGAGCATTGGCCA 61.965 61.111 0.00 0.00 42.56 5.36
211 212 2.440796 CGGTGGAGCATTGGCCAT 60.441 61.111 6.09 0.00 42.56 4.40
212 213 2.777972 CGGTGGAGCATTGGCCATG 61.778 63.158 6.09 8.63 42.56 3.66
262 263 3.439857 ACTCTGATAAAAGCTGGGCAA 57.560 42.857 0.00 0.00 0.00 4.52
263 264 3.084786 ACTCTGATAAAAGCTGGGCAAC 58.915 45.455 0.00 0.00 0.00 4.17
287 288 1.832219 CTCAATCATCAGGCCCCGA 59.168 57.895 0.00 0.00 0.00 5.14
290 291 2.000701 AATCATCAGGCCCCGACCA 61.001 57.895 0.00 0.00 0.00 4.02
349 350 4.130118 CAATTCCTACCAGATAGCACACC 58.870 47.826 0.00 0.00 0.00 4.16
542 549 3.588210 ATGATTCCATGAGTGCCATCA 57.412 42.857 0.00 0.00 31.94 3.07
701 990 2.233676 TGTCTATGCAACCATCGACACT 59.766 45.455 6.86 0.00 44.42 3.55
729 1069 3.756069 CAGTTGCAAATCTCTAAGCAGC 58.244 45.455 0.00 0.00 38.35 5.25
746 1086 3.944015 AGCAGCCACTTGTCAGATAATTC 59.056 43.478 0.00 0.00 0.00 2.17
897 1238 1.214367 ACGGCAGAAAACTACACACG 58.786 50.000 0.00 0.00 0.00 4.49
986 1331 8.028938 TGCTCACTAAATTAGCAAGGAAAAATC 58.971 33.333 0.00 0.00 42.96 2.17
1039 1384 7.306866 GGAGTATATGCGTCAGAATTCAGAAAC 60.307 40.741 8.44 1.62 0.00 2.78
1043 1388 2.808543 GCGTCAGAATTCAGAAACTGGT 59.191 45.455 8.44 0.00 31.51 4.00
1513 1858 3.437049 GCTTGATGAGGTTGGAGTTGTAC 59.563 47.826 0.00 0.00 0.00 2.90
1798 2143 1.139853 GGGTAGAGGTTGAGCATGAGG 59.860 57.143 0.00 0.00 0.00 3.86
2293 2638 2.520968 GGGGACAGCAGGTTGGTT 59.479 61.111 0.00 0.00 0.00 3.67
2378 2733 0.609131 AGGCAAACATTAGCAGGCGT 60.609 50.000 0.00 0.00 0.00 5.68
2384 2739 4.403453 CAAACATTAGCAGGCGTAGAAAC 58.597 43.478 0.00 0.00 0.00 2.78
2390 2745 0.670546 GCAGGCGTAGAAACAGAGCA 60.671 55.000 0.00 0.00 0.00 4.26
2422 2777 1.043816 AGCGTATGTGGATGGAGAGG 58.956 55.000 0.00 0.00 0.00 3.69
2526 2881 2.203209 CTAGCCCCCATTGTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
2555 2915 3.991725 CTGCTCCTGCTGGGAAGGC 62.992 68.421 10.07 9.69 44.58 4.35
2591 2951 2.397597 GATTGCCTCTCCTCTCCTCTT 58.602 52.381 0.00 0.00 0.00 2.85
2596 2961 1.675552 CTCTCCTCTCCTCTTCCGAC 58.324 60.000 0.00 0.00 0.00 4.79
2681 3046 1.338105 TGTCTGAATTGCGGAGTGAGG 60.338 52.381 0.00 0.00 30.98 3.86
2683 3048 0.036010 CTGAATTGCGGAGTGAGGGT 60.036 55.000 0.00 0.00 0.00 4.34
2830 3587 0.393132 CGAGGGGAGGCTCCTTTTTC 60.393 60.000 31.39 20.87 36.57 2.29
2870 3632 4.076394 TGAGGTTTATTTGGTGGTAGTGC 58.924 43.478 0.00 0.00 0.00 4.40
2873 3635 5.497474 AGGTTTATTTGGTGGTAGTGCTAG 58.503 41.667 0.00 0.00 0.00 3.42
3040 3804 2.158957 TCACACTTCCACTTCACTCCAC 60.159 50.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.395311 TATGACCGCTCGAGAGGGTT 60.395 55.000 34.27 21.77 39.47 4.11
1 2 1.102222 GTATGACCGCTCGAGAGGGT 61.102 60.000 34.27 28.83 39.47 4.34
2 3 1.101635 TGTATGACCGCTCGAGAGGG 61.102 60.000 34.27 26.10 39.47 4.30
3 4 0.029567 GTGTATGACCGCTCGAGAGG 59.970 60.000 30.81 30.81 41.06 3.69
4 5 0.029567 GGTGTATGACCGCTCGAGAG 59.970 60.000 18.75 13.89 34.02 3.20
5 6 2.104267 GGTGTATGACCGCTCGAGA 58.896 57.895 18.75 0.00 34.02 4.04
6 7 4.711980 GGTGTATGACCGCTCGAG 57.288 61.111 8.45 8.45 34.02 4.04
13 14 0.249398 AGGCTTGACGGTGTATGACC 59.751 55.000 0.00 0.00 42.07 4.02
14 15 2.953466 TAGGCTTGACGGTGTATGAC 57.047 50.000 0.00 0.00 0.00 3.06
15 16 3.965379 TTTAGGCTTGACGGTGTATGA 57.035 42.857 0.00 0.00 0.00 2.15
16 17 3.749088 TGTTTTAGGCTTGACGGTGTATG 59.251 43.478 0.00 0.00 0.00 2.39
17 18 4.010667 TGTTTTAGGCTTGACGGTGTAT 57.989 40.909 0.00 0.00 0.00 2.29
18 19 3.472283 TGTTTTAGGCTTGACGGTGTA 57.528 42.857 0.00 0.00 0.00 2.90
19 20 2.335316 TGTTTTAGGCTTGACGGTGT 57.665 45.000 0.00 0.00 0.00 4.16
20 21 2.031157 CCTTGTTTTAGGCTTGACGGTG 60.031 50.000 0.00 0.00 0.00 4.94
21 22 2.227194 CCTTGTTTTAGGCTTGACGGT 58.773 47.619 0.00 0.00 0.00 4.83
22 23 2.225727 GACCTTGTTTTAGGCTTGACGG 59.774 50.000 0.00 0.00 38.99 4.79
23 24 2.875933 TGACCTTGTTTTAGGCTTGACG 59.124 45.455 0.00 0.00 38.99 4.35
24 25 6.759497 ATATGACCTTGTTTTAGGCTTGAC 57.241 37.500 0.00 0.00 38.99 3.18
25 26 7.775053 AAATATGACCTTGTTTTAGGCTTGA 57.225 32.000 0.00 0.00 38.99 3.02
26 27 7.331687 CCAAAATATGACCTTGTTTTAGGCTTG 59.668 37.037 0.00 0.00 38.99 4.01
27 28 7.386059 CCAAAATATGACCTTGTTTTAGGCTT 58.614 34.615 0.00 0.00 38.99 4.35
28 29 6.070824 CCCAAAATATGACCTTGTTTTAGGCT 60.071 38.462 0.00 0.00 38.99 4.58
29 30 6.071051 TCCCAAAATATGACCTTGTTTTAGGC 60.071 38.462 0.00 0.00 38.99 3.93
30 31 7.475137 TCCCAAAATATGACCTTGTTTTAGG 57.525 36.000 0.00 0.00 41.31 2.69
31 32 8.531146 ACATCCCAAAATATGACCTTGTTTTAG 58.469 33.333 0.00 0.00 0.00 1.85
32 33 8.429237 ACATCCCAAAATATGACCTTGTTTTA 57.571 30.769 0.00 0.00 0.00 1.52
33 34 7.016072 TGACATCCCAAAATATGACCTTGTTTT 59.984 33.333 0.00 0.00 0.00 2.43
34 35 6.496565 TGACATCCCAAAATATGACCTTGTTT 59.503 34.615 0.00 0.00 0.00 2.83
35 36 6.015918 TGACATCCCAAAATATGACCTTGTT 58.984 36.000 0.00 0.00 0.00 2.83
36 37 5.418840 GTGACATCCCAAAATATGACCTTGT 59.581 40.000 0.00 0.00 0.00 3.16
37 38 5.449041 CGTGACATCCCAAAATATGACCTTG 60.449 44.000 0.00 0.00 0.00 3.61
38 39 4.640201 CGTGACATCCCAAAATATGACCTT 59.360 41.667 0.00 0.00 0.00 3.50
39 40 4.199310 CGTGACATCCCAAAATATGACCT 58.801 43.478 0.00 0.00 0.00 3.85
40 41 3.243068 GCGTGACATCCCAAAATATGACC 60.243 47.826 0.00 0.00 0.00 4.02
41 42 3.627577 AGCGTGACATCCCAAAATATGAC 59.372 43.478 0.00 0.00 0.00 3.06
42 43 3.627123 CAGCGTGACATCCCAAAATATGA 59.373 43.478 0.00 0.00 0.00 2.15
43 44 3.243168 CCAGCGTGACATCCCAAAATATG 60.243 47.826 0.00 0.00 0.00 1.78
44 45 2.951642 CCAGCGTGACATCCCAAAATAT 59.048 45.455 0.00 0.00 0.00 1.28
45 46 2.364632 CCAGCGTGACATCCCAAAATA 58.635 47.619 0.00 0.00 0.00 1.40
46 47 1.176527 CCAGCGTGACATCCCAAAAT 58.823 50.000 0.00 0.00 0.00 1.82
47 48 1.523154 GCCAGCGTGACATCCCAAAA 61.523 55.000 0.00 0.00 0.00 2.44
48 49 1.971167 GCCAGCGTGACATCCCAAA 60.971 57.895 0.00 0.00 0.00 3.28
49 50 1.549243 TAGCCAGCGTGACATCCCAA 61.549 55.000 0.00 0.00 0.00 4.12
50 51 1.960040 CTAGCCAGCGTGACATCCCA 61.960 60.000 0.00 0.00 0.00 4.37
51 52 1.227380 CTAGCCAGCGTGACATCCC 60.227 63.158 0.00 0.00 0.00 3.85
52 53 1.884926 GCTAGCCAGCGTGACATCC 60.885 63.158 2.29 0.00 38.22 3.51
53 54 3.711348 GCTAGCCAGCGTGACATC 58.289 61.111 2.29 0.00 38.22 3.06
62 63 3.625649 AGAGAGGAAAAAGCTAGCCAG 57.374 47.619 12.13 0.00 0.00 4.85
63 64 4.373156 AAAGAGAGGAAAAAGCTAGCCA 57.627 40.909 12.13 0.00 0.00 4.75
64 65 4.156922 GGAAAAGAGAGGAAAAAGCTAGCC 59.843 45.833 12.13 0.00 0.00 3.93
65 66 5.007034 AGGAAAAGAGAGGAAAAAGCTAGC 58.993 41.667 6.62 6.62 0.00 3.42
66 67 5.106357 GCAGGAAAAGAGAGGAAAAAGCTAG 60.106 44.000 0.00 0.00 0.00 3.42
67 68 4.762251 GCAGGAAAAGAGAGGAAAAAGCTA 59.238 41.667 0.00 0.00 0.00 3.32
68 69 3.571828 GCAGGAAAAGAGAGGAAAAAGCT 59.428 43.478 0.00 0.00 0.00 3.74
69 70 3.305676 GGCAGGAAAAGAGAGGAAAAAGC 60.306 47.826 0.00 0.00 0.00 3.51
70 71 3.891366 TGGCAGGAAAAGAGAGGAAAAAG 59.109 43.478 0.00 0.00 0.00 2.27
71 72 3.909732 TGGCAGGAAAAGAGAGGAAAAA 58.090 40.909 0.00 0.00 0.00 1.94
72 73 3.593442 TGGCAGGAAAAGAGAGGAAAA 57.407 42.857 0.00 0.00 0.00 2.29
73 74 3.814504 ATGGCAGGAAAAGAGAGGAAA 57.185 42.857 0.00 0.00 0.00 3.13
74 75 3.331889 AGAATGGCAGGAAAAGAGAGGAA 59.668 43.478 0.00 0.00 0.00 3.36
75 76 2.915604 AGAATGGCAGGAAAAGAGAGGA 59.084 45.455 0.00 0.00 0.00 3.71
76 77 3.015327 CAGAATGGCAGGAAAAGAGAGG 58.985 50.000 0.00 0.00 0.00 3.69
77 78 3.947868 TCAGAATGGCAGGAAAAGAGAG 58.052 45.455 0.00 0.00 36.16 3.20
78 79 4.521146 GATCAGAATGGCAGGAAAAGAGA 58.479 43.478 0.00 0.00 36.16 3.10
79 80 3.311871 CGATCAGAATGGCAGGAAAAGAG 59.688 47.826 0.00 0.00 36.16 2.85
80 81 3.055167 TCGATCAGAATGGCAGGAAAAGA 60.055 43.478 0.00 0.00 36.16 2.52
81 82 3.273434 TCGATCAGAATGGCAGGAAAAG 58.727 45.455 0.00 0.00 36.16 2.27
82 83 3.273434 CTCGATCAGAATGGCAGGAAAA 58.727 45.455 0.00 0.00 36.16 2.29
83 84 2.420547 CCTCGATCAGAATGGCAGGAAA 60.421 50.000 0.00 0.00 36.16 3.13
84 85 1.139654 CCTCGATCAGAATGGCAGGAA 59.860 52.381 0.00 0.00 36.16 3.36
85 86 0.755079 CCTCGATCAGAATGGCAGGA 59.245 55.000 0.00 0.00 36.16 3.86
86 87 0.755079 TCCTCGATCAGAATGGCAGG 59.245 55.000 0.00 0.00 36.16 4.85
87 88 1.270199 CCTCCTCGATCAGAATGGCAG 60.270 57.143 0.00 0.00 36.16 4.85
88 89 0.755079 CCTCCTCGATCAGAATGGCA 59.245 55.000 0.00 0.00 36.16 4.92
89 90 0.602372 GCCTCCTCGATCAGAATGGC 60.602 60.000 0.00 0.00 36.16 4.40
90 91 0.034616 GGCCTCCTCGATCAGAATGG 59.965 60.000 0.00 0.00 36.16 3.16
91 92 0.319383 CGGCCTCCTCGATCAGAATG 60.319 60.000 0.00 0.00 37.54 2.67
92 93 1.467678 CCGGCCTCCTCGATCAGAAT 61.468 60.000 0.00 0.00 0.00 2.40
93 94 2.127869 CCGGCCTCCTCGATCAGAA 61.128 63.158 0.00 0.00 0.00 3.02
94 95 2.519541 CCGGCCTCCTCGATCAGA 60.520 66.667 0.00 0.00 0.00 3.27
95 96 2.356818 GAACCGGCCTCCTCGATCAG 62.357 65.000 0.00 0.00 0.00 2.90
96 97 2.363795 AACCGGCCTCCTCGATCA 60.364 61.111 0.00 0.00 0.00 2.92
97 98 1.677637 AAGAACCGGCCTCCTCGATC 61.678 60.000 0.00 0.00 0.00 3.69
98 99 1.677637 GAAGAACCGGCCTCCTCGAT 61.678 60.000 0.00 0.00 0.00 3.59
99 100 2.283676 AAGAACCGGCCTCCTCGA 60.284 61.111 0.00 0.00 0.00 4.04
100 101 2.184579 GAAGAACCGGCCTCCTCG 59.815 66.667 0.00 0.00 0.00 4.63
101 102 1.219393 CAGAAGAACCGGCCTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
102 103 2.960688 GCAGAAGAACCGGCCTCCT 61.961 63.158 0.00 0.00 0.00 3.69
103 104 2.436824 GCAGAAGAACCGGCCTCC 60.437 66.667 0.00 0.00 0.00 4.30
104 105 1.301677 CTTGCAGAAGAACCGGCCTC 61.302 60.000 0.00 0.00 0.00 4.70
105 106 1.302832 CTTGCAGAAGAACCGGCCT 60.303 57.895 0.00 0.00 0.00 5.19
106 107 1.301677 CTCTTGCAGAAGAACCGGCC 61.302 60.000 0.00 0.00 37.77 6.13
107 108 0.320771 TCTCTTGCAGAAGAACCGGC 60.321 55.000 0.00 0.00 37.77 6.13
108 109 1.433534 GTCTCTTGCAGAAGAACCGG 58.566 55.000 0.00 0.00 37.77 5.28
109 110 1.433534 GGTCTCTTGCAGAAGAACCG 58.566 55.000 4.52 0.00 37.77 4.44
110 111 1.433534 CGGTCTCTTGCAGAAGAACC 58.566 55.000 9.21 8.83 37.77 3.62
111 112 0.793250 GCGGTCTCTTGCAGAAGAAC 59.207 55.000 5.59 5.59 37.77 3.01
112 113 0.681733 AGCGGTCTCTTGCAGAAGAA 59.318 50.000 2.03 0.00 37.77 2.52
113 114 0.681733 AAGCGGTCTCTTGCAGAAGA 59.318 50.000 0.00 0.00 36.72 2.87
114 115 1.196354 CAAAGCGGTCTCTTGCAGAAG 59.804 52.381 0.00 0.00 30.72 2.85
115 116 1.229428 CAAAGCGGTCTCTTGCAGAA 58.771 50.000 0.00 0.00 30.72 3.02
116 117 0.603707 CCAAAGCGGTCTCTTGCAGA 60.604 55.000 0.00 0.00 0.00 4.26
117 118 1.871772 CCAAAGCGGTCTCTTGCAG 59.128 57.895 0.00 0.00 0.00 4.41
118 119 2.260869 GCCAAAGCGGTCTCTTGCA 61.261 57.895 0.00 0.00 36.97 4.08
119 120 2.563427 GCCAAAGCGGTCTCTTGC 59.437 61.111 0.00 0.00 36.97 4.01
120 121 3.267974 GGCCAAAGCGGTCTCTTG 58.732 61.111 0.00 0.00 41.24 3.02
125 126 3.273080 CTTGCAGGCCAAAGCGGTC 62.273 63.158 5.01 0.00 41.10 4.79
126 127 3.297620 CTTGCAGGCCAAAGCGGT 61.298 61.111 5.01 0.00 41.24 5.68
127 128 4.729856 GCTTGCAGGCCAAAGCGG 62.730 66.667 18.44 11.05 41.24 5.52
128 129 3.909258 CTGCTTGCAGGCCAAAGCG 62.909 63.158 24.28 17.80 41.24 4.68
129 130 2.048503 CTGCTTGCAGGCCAAAGC 60.049 61.111 23.65 23.65 38.76 3.51
130 131 2.048503 GCTGCTTGCAGGCCAAAG 60.049 61.111 19.11 10.25 42.31 2.77
143 144 2.487532 GGATGGTCCAGCATGCTGC 61.488 63.158 37.11 25.65 45.46 5.25
144 145 2.184830 CGGATGGTCCAGCATGCTG 61.185 63.158 35.88 35.88 43.26 4.41
145 146 1.913951 TTCGGATGGTCCAGCATGCT 61.914 55.000 16.30 16.30 35.91 3.79
146 147 1.451927 TTCGGATGGTCCAGCATGC 60.452 57.895 10.51 10.51 35.91 4.06
147 148 1.097547 GGTTCGGATGGTCCAGCATG 61.098 60.000 9.81 0.55 35.91 4.06
148 149 1.224592 GGTTCGGATGGTCCAGCAT 59.775 57.895 9.81 0.00 35.91 3.79
149 150 0.616395 TAGGTTCGGATGGTCCAGCA 60.616 55.000 9.81 0.00 35.91 4.41
150 151 0.179081 GTAGGTTCGGATGGTCCAGC 60.179 60.000 0.00 0.00 35.91 4.85
151 152 0.102481 CGTAGGTTCGGATGGTCCAG 59.898 60.000 0.00 0.00 35.91 3.86
152 153 0.612732 ACGTAGGTTCGGATGGTCCA 60.613 55.000 0.00 0.00 35.91 4.02
153 154 0.179119 CACGTAGGTTCGGATGGTCC 60.179 60.000 0.00 0.00 34.94 4.46
154 155 0.529378 ACACGTAGGTTCGGATGGTC 59.471 55.000 0.00 0.00 34.94 4.02
155 156 1.838112 TACACGTAGGTTCGGATGGT 58.162 50.000 0.00 0.00 34.94 3.55
156 157 3.611057 GCTATACACGTAGGTTCGGATGG 60.611 52.174 0.00 0.00 34.94 3.51
157 158 3.252701 AGCTATACACGTAGGTTCGGATG 59.747 47.826 0.00 0.00 34.94 3.51
158 159 3.252701 CAGCTATACACGTAGGTTCGGAT 59.747 47.826 0.00 0.00 30.45 4.18
159 160 2.615447 CAGCTATACACGTAGGTTCGGA 59.385 50.000 0.00 0.00 30.45 4.55
160 161 2.615447 TCAGCTATACACGTAGGTTCGG 59.385 50.000 0.00 0.00 30.45 4.30
161 162 3.957671 TCAGCTATACACGTAGGTTCG 57.042 47.619 0.00 0.00 30.45 3.95
162 163 4.043073 GCTTCAGCTATACACGTAGGTTC 58.957 47.826 0.00 0.00 38.21 3.62
163 164 3.446161 TGCTTCAGCTATACACGTAGGTT 59.554 43.478 0.00 0.00 42.66 3.50
164 165 3.021695 TGCTTCAGCTATACACGTAGGT 58.978 45.455 0.00 0.00 42.66 3.08
165 166 3.372954 GTGCTTCAGCTATACACGTAGG 58.627 50.000 0.00 0.00 42.66 3.18
166 167 3.181490 TGGTGCTTCAGCTATACACGTAG 60.181 47.826 0.00 0.00 42.66 3.51
167 168 2.756207 TGGTGCTTCAGCTATACACGTA 59.244 45.455 0.00 0.00 42.66 3.57
168 169 1.548719 TGGTGCTTCAGCTATACACGT 59.451 47.619 0.00 0.00 42.66 4.49
169 170 1.927174 GTGGTGCTTCAGCTATACACG 59.073 52.381 0.00 0.00 42.66 4.49
170 171 3.190874 GAGTGGTGCTTCAGCTATACAC 58.809 50.000 0.00 4.41 42.66 2.90
171 172 2.168521 GGAGTGGTGCTTCAGCTATACA 59.831 50.000 0.00 0.00 42.66 2.29
172 173 2.168521 TGGAGTGGTGCTTCAGCTATAC 59.831 50.000 0.00 0.00 42.66 1.47
173 174 2.168521 GTGGAGTGGTGCTTCAGCTATA 59.831 50.000 0.00 0.00 42.66 1.31
174 175 1.065854 GTGGAGTGGTGCTTCAGCTAT 60.066 52.381 0.00 0.00 42.66 2.97
175 176 0.321671 GTGGAGTGGTGCTTCAGCTA 59.678 55.000 0.00 0.00 42.66 3.32
176 177 1.072159 GTGGAGTGGTGCTTCAGCT 59.928 57.895 0.00 0.00 42.66 4.24
177 178 2.320587 CGTGGAGTGGTGCTTCAGC 61.321 63.158 0.00 0.00 42.50 4.26
178 179 1.669115 CCGTGGAGTGGTGCTTCAG 60.669 63.158 0.00 0.00 32.27 3.02
179 180 2.425592 CCGTGGAGTGGTGCTTCA 59.574 61.111 0.00 0.00 0.00 3.02
180 181 2.426023 ACCGTGGAGTGGTGCTTC 59.574 61.111 0.00 0.00 38.60 3.86
190 191 2.350895 CCAATGCTCCACCGTGGA 59.649 61.111 19.39 19.39 45.98 4.02
191 192 3.443045 GCCAATGCTCCACCGTGG 61.443 66.667 11.73 11.73 39.43 4.94
192 193 3.443045 GGCCAATGCTCCACCGTG 61.443 66.667 0.00 0.00 37.74 4.94
193 194 3.286694 ATGGCCAATGCTCCACCGT 62.287 57.895 10.96 0.00 37.74 4.83
194 195 2.440796 ATGGCCAATGCTCCACCG 60.441 61.111 10.96 0.00 37.74 4.94
195 196 3.213264 CATGGCCAATGCTCCACC 58.787 61.111 10.96 0.00 37.74 4.61
207 208 2.592861 CGCTCCTTAGGGCATGGC 60.593 66.667 11.56 11.56 0.00 4.40
208 209 2.111878 CCGCTCCTTAGGGCATGG 59.888 66.667 11.22 2.98 34.41 3.66
209 210 2.111878 CCCGCTCCTTAGGGCATG 59.888 66.667 11.22 0.00 41.34 4.06
262 263 1.753141 GCCTGATGATTGAGCCCATGT 60.753 52.381 0.00 0.00 0.00 3.21
263 264 0.959553 GCCTGATGATTGAGCCCATG 59.040 55.000 0.00 0.00 0.00 3.66
349 350 2.105006 ATGACTAGTGCAGCAACCAG 57.895 50.000 0.00 0.00 0.00 4.00
542 549 1.068434 CATTGTCACGCCCCAAAAGTT 59.932 47.619 0.00 0.00 0.00 2.66
650 657 2.409870 CGCCAGACCAATTCAGGGC 61.410 63.158 0.00 0.00 41.38 5.19
701 990 6.183360 GCTTAGAGATTTGCAACTGCTTATCA 60.183 38.462 0.00 0.00 42.66 2.15
729 1069 6.037940 CACATCCTGAATTATCTGACAAGTGG 59.962 42.308 0.00 0.00 0.00 4.00
746 1086 1.002888 AGTGAGGAACTGCACATCCTG 59.997 52.381 18.06 0.00 46.04 3.86
986 1331 8.218338 ACTAGATAACATTGCTTGAGAAATGG 57.782 34.615 14.60 0.18 43.76 3.16
1039 1384 2.619177 CGATCCCAGTGAGTACTACCAG 59.381 54.545 0.00 0.00 34.74 4.00
1043 1388 2.651455 CACCGATCCCAGTGAGTACTA 58.349 52.381 0.00 0.00 36.01 1.82
1333 1678 1.374252 GGTGTACCTGCTCCACGTG 60.374 63.158 9.08 9.08 0.00 4.49
1489 1834 3.087031 CAACTCCAACCTCATCAAGCAT 58.913 45.455 0.00 0.00 0.00 3.79
1513 1858 1.010125 CAAGGACAACGCCAACACG 60.010 57.895 0.00 0.00 39.50 4.49
1753 2098 1.153608 CTCGCTGATGCAGAGCAGT 60.154 57.895 17.99 0.00 43.65 4.40
2060 2405 4.025401 CGCCGCCAACTCAACCAC 62.025 66.667 0.00 0.00 0.00 4.16
2378 2733 1.416030 TGCCACTGTGCTCTGTTTCTA 59.584 47.619 1.29 0.00 0.00 2.10
2384 2739 1.449726 TTGCTTGCCACTGTGCTCTG 61.450 55.000 1.29 0.00 0.00 3.35
2390 2745 0.606401 ATACGCTTGCTTGCCACTGT 60.606 50.000 0.00 0.00 0.00 3.55
2526 2881 2.045536 GGAGCAGGACAAGCTGGG 60.046 66.667 0.00 0.00 43.58 4.45
2555 2915 1.010795 AATCCCCTTCCCTTCCCTTG 58.989 55.000 0.00 0.00 0.00 3.61
2591 2951 0.608130 CACCACCAATCTCTGTCGGA 59.392 55.000 0.00 0.00 0.00 4.55
2596 2961 1.915614 GCACGCACCACCAATCTCTG 61.916 60.000 0.00 0.00 0.00 3.35
2681 3046 1.686110 ACCGTCCTCCATCCTCACC 60.686 63.158 0.00 0.00 0.00 4.02
2683 3048 1.685765 CCACCGTCCTCCATCCTCA 60.686 63.158 0.00 0.00 0.00 3.86
3040 3804 3.185155 GCTTGCACAGCCAGCTAG 58.815 61.111 7.70 0.00 42.82 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.