Multiple sequence alignment - TraesCS2A01G223800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G223800 chr2A 100.000 5896 0 0 1 5896 220359688 220365583 0.000000e+00 10888.0
1 TraesCS2A01G223800 chr2A 89.686 795 71 10 1 788 765216343 765215553 0.000000e+00 1003.0
2 TraesCS2A01G223800 chr2A 84.211 133 15 5 3763 3895 121180317 121180443 2.230000e-24 124.0
3 TraesCS2A01G223800 chr2D 96.593 2113 50 6 800 2905 199844239 199846336 0.000000e+00 3483.0
4 TraesCS2A01G223800 chr2D 95.022 1607 34 16 4108 5687 199847784 199849371 0.000000e+00 2483.0
5 TraesCS2A01G223800 chr2D 95.969 1042 24 8 3037 4061 199846505 199847545 0.000000e+00 1676.0
6 TraesCS2A01G223800 chr2D 90.025 792 72 7 1 788 590029267 590028479 0.000000e+00 1018.0
7 TraesCS2A01G223800 chr2B 95.446 1603 41 11 4109 5687 376119350 376120944 0.000000e+00 2527.0
8 TraesCS2A01G223800 chr2B 97.305 1039 21 2 1873 2904 376116860 376117898 0.000000e+00 1757.0
9 TraesCS2A01G223800 chr2B 95.188 1039 34 7 3037 4061 376118053 376119089 0.000000e+00 1628.0
10 TraesCS2A01G223800 chr2B 97.371 913 24 0 964 1876 376115842 376116754 0.000000e+00 1554.0
11 TraesCS2A01G223800 chr2B 95.294 170 8 0 797 966 376110252 376110421 2.710000e-68 270.0
12 TraesCS2A01G223800 chr2B 93.529 170 6 1 797 966 376115461 376115625 1.270000e-61 248.0
13 TraesCS2A01G223800 chr2B 91.892 111 9 0 2924 3034 673354500 673354610 7.910000e-34 156.0
14 TraesCS2A01G223800 chr2B 100.000 34 0 0 3873 3906 484122618 484122651 4.930000e-06 63.9
15 TraesCS2A01G223800 chr5A 90.645 791 69 5 1 787 44284215 44283426 0.000000e+00 1046.0
16 TraesCS2A01G223800 chr5A 91.892 111 9 0 2924 3034 544151955 544152065 7.910000e-34 156.0
17 TraesCS2A01G223800 chr5A 94.444 36 2 0 3183 3218 687146218 687146253 8.250000e-04 56.5
18 TraesCS2A01G223800 chr3D 90.645 791 69 5 1 787 96640458 96641247 0.000000e+00 1046.0
19 TraesCS2A01G223800 chr3D 89.873 790 75 5 1 787 341474202 341473415 0.000000e+00 1011.0
20 TraesCS2A01G223800 chr3D 93.627 204 13 0 5693 5896 587900408 587900611 7.420000e-79 305.0
21 TraesCS2A01G223800 chr3D 90.588 170 13 3 5727 5896 32970996 32971162 7.690000e-54 222.0
22 TraesCS2A01G223800 chr3D 94.595 111 6 0 2924 3034 70280547 70280437 7.860000e-39 172.0
23 TraesCS2A01G223800 chr3D 90.833 120 11 0 2924 3043 484804018 484803899 1.700000e-35 161.0
24 TraesCS2A01G223800 chr3D 91.892 111 9 0 2924 3034 136563159 136563049 7.910000e-34 156.0
25 TraesCS2A01G223800 chr3B 90.013 791 73 6 1 787 621476132 621475344 0.000000e+00 1018.0
26 TraesCS2A01G223800 chr3B 82.329 249 38 4 2294 2540 740858069 740858313 1.660000e-50 211.0
27 TraesCS2A01G223800 chr3B 83.636 110 12 2 3803 3906 54168556 54168447 1.350000e-16 99.0
28 TraesCS2A01G223800 chr4D 89.861 789 74 6 1 786 28487898 28488683 0.000000e+00 1009.0
29 TraesCS2A01G223800 chr4D 94.686 207 10 1 5691 5896 375734523 375734729 2.650000e-83 320.0
30 TraesCS2A01G223800 chr4D 92.793 111 8 0 2924 3034 317352019 317351909 1.700000e-35 161.0
31 TraesCS2A01G223800 chr4D 91.489 47 4 0 3186 3232 339455870 339455824 1.370000e-06 65.8
32 TraesCS2A01G223800 chr4D 88.235 51 6 0 3183 3233 471230070 471230120 1.770000e-05 62.1
33 TraesCS2A01G223800 chr4B 89.633 791 76 6 1 787 672252699 672253487 0.000000e+00 1002.0
34 TraesCS2A01G223800 chr1B 89.646 792 74 8 1 787 589133241 589132453 0.000000e+00 1002.0
35 TraesCS2A01G223800 chr1B 82.353 272 44 3 3852 4119 268798919 268799190 3.550000e-57 233.0
36 TraesCS2A01G223800 chr1B 91.379 116 9 1 2926 3041 678191014 678191128 2.200000e-34 158.0
37 TraesCS2A01G223800 chr1B 90.678 118 9 2 2924 3041 597105711 597105596 7.910000e-34 156.0
38 TraesCS2A01G223800 chr1B 91.111 45 2 1 3868 3910 672868999 672869043 6.380000e-05 60.2
39 TraesCS2A01G223800 chr1B 92.500 40 1 1 3868 3905 671570099 671570138 8.250000e-04 56.5
40 TraesCS2A01G223800 chr1A 87.419 310 35 3 3814 4119 241316295 241316604 2.610000e-93 353.0
41 TraesCS2A01G223800 chr1A 100.000 41 0 0 3186 3226 241314068 241314108 6.340000e-10 76.8
42 TraesCS2A01G223800 chr4A 95.215 209 7 1 5691 5896 534250940 534251148 1.580000e-85 327.0
43 TraesCS2A01G223800 chr1D 85.209 311 41 4 3814 4119 194135303 194135613 1.230000e-81 315.0
44 TraesCS2A01G223800 chr6A 94.203 207 9 1 5693 5896 137879412 137879618 4.440000e-81 313.0
45 TraesCS2A01G223800 chr6A 93.333 60 4 0 3978 4037 110335486 110335427 8.140000e-14 89.8
46 TraesCS2A01G223800 chr6B 89.655 203 7 3 5693 5894 559369873 559369684 4.560000e-61 246.0
47 TraesCS2A01G223800 chr6B 94.203 69 4 0 3978 4046 175712862 175712794 8.080000e-19 106.0
48 TraesCS2A01G223800 chrUn 83.468 248 36 4 2294 2540 314013323 314013566 5.950000e-55 226.0
49 TraesCS2A01G223800 chrUn 83.468 248 36 4 2294 2540 337230628 337230871 5.950000e-55 226.0
50 TraesCS2A01G223800 chr3A 83.133 249 36 4 2294 2540 361615105 361614861 7.690000e-54 222.0
51 TraesCS2A01G223800 chr3A 100.000 30 0 0 3264 3293 552801403 552801374 8.250000e-04 56.5
52 TraesCS2A01G223800 chr5D 91.736 121 8 2 2926 3046 76233754 76233636 3.650000e-37 167.0
53 TraesCS2A01G223800 chr5D 94.737 38 0 2 3870 3906 27803168 27803204 2.290000e-04 58.4
54 TraesCS2A01G223800 chr6D 92.754 69 5 0 3978 4046 91560365 91560297 3.760000e-17 100.0
55 TraesCS2A01G223800 chr6D 100.000 30 0 0 3877 3906 84636234 84636205 8.250000e-04 56.5
56 TraesCS2A01G223800 chr7B 79.710 138 20 7 3814 3946 32396099 32395965 6.290000e-15 93.5
57 TraesCS2A01G223800 chr7B 100.000 31 0 0 3874 3904 64779540 64779570 2.290000e-04 58.4
58 TraesCS2A01G223800 chr5B 87.500 56 6 1 3178 3233 670540518 670540464 4.930000e-06 63.9
59 TraesCS2A01G223800 chr5B 100.000 33 0 0 3874 3906 428144292 428144260 1.770000e-05 62.1
60 TraesCS2A01G223800 chr7A 89.130 46 3 2 3854 3899 148804858 148804901 8.250000e-04 56.5
61 TraesCS2A01G223800 chr7A 87.500 48 6 0 3186 3233 545041417 545041370 8.250000e-04 56.5
62 TraesCS2A01G223800 chr7A 87.500 48 6 0 3186 3233 585303570 585303523 8.250000e-04 56.5
63 TraesCS2A01G223800 chr7D 100.000 29 0 0 3880 3908 631334781 631334753 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G223800 chr2A 220359688 220365583 5895 False 10888.000000 10888 100.000000 1 5896 1 chr2A.!!$F2 5895
1 TraesCS2A01G223800 chr2A 765215553 765216343 790 True 1003.000000 1003 89.686000 1 788 1 chr2A.!!$R1 787
2 TraesCS2A01G223800 chr2D 199844239 199849371 5132 False 2547.333333 3483 95.861333 800 5687 3 chr2D.!!$F1 4887
3 TraesCS2A01G223800 chr2D 590028479 590029267 788 True 1018.000000 1018 90.025000 1 788 1 chr2D.!!$R1 787
4 TraesCS2A01G223800 chr2B 376115461 376120944 5483 False 1542.800000 2527 95.767800 797 5687 5 chr2B.!!$F4 4890
5 TraesCS2A01G223800 chr5A 44283426 44284215 789 True 1046.000000 1046 90.645000 1 787 1 chr5A.!!$R1 786
6 TraesCS2A01G223800 chr3D 96640458 96641247 789 False 1046.000000 1046 90.645000 1 787 1 chr3D.!!$F2 786
7 TraesCS2A01G223800 chr3D 341473415 341474202 787 True 1011.000000 1011 89.873000 1 787 1 chr3D.!!$R3 786
8 TraesCS2A01G223800 chr3B 621475344 621476132 788 True 1018.000000 1018 90.013000 1 787 1 chr3B.!!$R2 786
9 TraesCS2A01G223800 chr4D 28487898 28488683 785 False 1009.000000 1009 89.861000 1 786 1 chr4D.!!$F1 785
10 TraesCS2A01G223800 chr4B 672252699 672253487 788 False 1002.000000 1002 89.633000 1 787 1 chr4B.!!$F1 786
11 TraesCS2A01G223800 chr1B 589132453 589133241 788 True 1002.000000 1002 89.646000 1 787 1 chr1B.!!$R1 786
12 TraesCS2A01G223800 chr1A 241314068 241316604 2536 False 214.900000 353 93.709500 3186 4119 2 chr1A.!!$F1 933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 302 0.102120 CTTCGGGCTTTGTTGTTGCA 59.898 50.0 0.00 0.00 0.00 4.08 F
378 381 0.246360 TTGTGGTCTGCATCGACGAT 59.754 50.0 4.05 4.05 34.75 3.73 F
1390 1616 0.246910 GGTCAAGTTCTCGTCCCCTC 59.753 60.0 0.00 0.00 0.00 4.30 F
1506 1732 0.743345 GCTTCTTATGGGACGCCGTT 60.743 55.0 0.00 0.00 0.00 4.44 F
2966 3308 0.174845 GGCCGGGCCTTATTTTGTTC 59.825 55.0 30.86 0.00 46.69 3.18 F
2967 3309 0.174845 GCCGGGCCTTATTTTGTTCC 59.825 55.0 8.12 0.00 0.00 3.62 F
2994 3336 0.179048 TCAAGCCACATATGCGGGAG 60.179 55.0 16.14 6.68 0.00 4.30 F
4083 6081 0.177836 TCCGGGCACTGTGACATATG 59.822 55.0 16.72 0.00 0.00 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1988 2323 0.902531 GGCACTAGGAACCAGCACTA 59.097 55.000 0.00 0.00 0.00 2.74 R
2264 2605 2.018542 TAAGGCGGACACAAGTATGC 57.981 50.000 0.00 0.00 0.00 3.14 R
2948 3290 0.174845 GGAACAAAATAAGGCCCGGC 59.825 55.000 0.00 0.00 0.00 6.13 R
2975 3317 0.179048 CTCCCGCATATGTGGCTTGA 60.179 55.000 26.98 18.25 44.11 3.02 R
4062 6056 0.177836 TATGTCACAGTGCCCGGATG 59.822 55.000 0.73 0.00 0.00 3.51 R
4066 6060 0.815213 CCCATATGTCACAGTGCCCG 60.815 60.000 1.24 0.00 0.00 6.13 R
4098 6096 1.001974 AGCATCTACAACCGCAACTCA 59.998 47.619 0.00 0.00 0.00 3.41 R
5691 7930 0.035598 TGCTAGCCAAACAACGCCTA 59.964 50.000 13.29 0.00 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.747460 CCTCGGTCGTCGGTGGTA 60.747 66.667 0.00 0.00 39.77 3.25
58 60 2.999063 CGGTGGTAAGGGGGTCGT 60.999 66.667 0.00 0.00 0.00 4.34
67 69 2.842936 GGGGGTCGTCGGATCCAT 60.843 66.667 13.41 0.00 46.01 3.41
172 174 6.018098 AGCGCTGAATAAAGATTCTTCAGATG 60.018 38.462 10.39 11.55 45.57 2.90
191 193 1.305930 GCTTTTCCGACGAGGCCATT 61.306 55.000 5.01 0.00 40.77 3.16
201 203 2.891580 GACGAGGCCATTAGTCCTATGA 59.108 50.000 5.01 0.00 31.71 2.15
278 281 0.836400 ATCCTCGTGGTGGACCTGTT 60.836 55.000 2.99 0.00 36.30 3.16
281 284 0.393077 CTCGTGGTGGACCTGTTTCT 59.607 55.000 0.00 0.00 36.82 2.52
289 292 0.250770 GGACCTGTTTCTTCGGGCTT 60.251 55.000 0.00 0.00 37.37 4.35
290 293 1.605753 GACCTGTTTCTTCGGGCTTT 58.394 50.000 0.00 0.00 37.37 3.51
293 296 1.681264 CCTGTTTCTTCGGGCTTTGTT 59.319 47.619 0.00 0.00 0.00 2.83
299 302 0.102120 CTTCGGGCTTTGTTGTTGCA 59.898 50.000 0.00 0.00 0.00 4.08
352 355 1.677637 GGAGGTAGTCAAGGAGCGGG 61.678 65.000 0.00 0.00 0.00 6.13
378 381 0.246360 TTGTGGTCTGCATCGACGAT 59.754 50.000 4.05 4.05 34.75 3.73
417 420 2.967397 CTGGGCTCGTGGTTCGTA 59.033 61.111 0.00 0.00 40.80 3.43
438 441 4.803329 AGATGGCAGATATGGTTTCCTT 57.197 40.909 0.00 0.00 0.00 3.36
460 465 1.493772 TCAGCGTTTTAGTCGTGGTG 58.506 50.000 0.00 0.00 0.00 4.17
606 612 4.415332 GCGTCGAGCTCGGGTGAA 62.415 66.667 33.98 13.46 44.04 3.18
612 618 1.030488 CGAGCTCGGGTGAAGAGGTA 61.030 60.000 28.40 0.00 45.20 3.08
619 625 2.564062 TCGGGTGAAGAGGTAATTCGTT 59.436 45.455 0.00 0.00 0.00 3.85
623 629 5.583457 CGGGTGAAGAGGTAATTCGTTATTT 59.417 40.000 0.00 0.00 0.00 1.40
657 663 3.625897 CTGTGGTGGTGCCGGAGA 61.626 66.667 5.05 0.00 41.21 3.71
754 761 7.061634 GTGACTTGTACTTTGTTCGTTATGAC 58.938 38.462 0.00 0.00 0.00 3.06
810 817 8.931385 AATTCACAGCATACAAAACATTATCC 57.069 30.769 0.00 0.00 0.00 2.59
818 825 8.303876 AGCATACAAAACATTATCCGTCTTTTT 58.696 29.630 0.00 0.00 0.00 1.94
966 973 2.652642 CAGCGCGCGTTGTTTAATTAAA 59.347 40.909 34.20 6.54 0.00 1.52
1179 1405 2.047274 CCTTCGCCTTCGCCTTCA 60.047 61.111 0.00 0.00 35.26 3.02
1310 1536 0.616679 CCGGACTTCTCCACCCCTAA 60.617 60.000 0.00 0.00 36.12 2.69
1359 1585 2.895680 CAGAAGAGCGCTAGCCCA 59.104 61.111 11.50 0.00 46.67 5.36
1384 1610 2.049433 CGCCGGTCAAGTTCTCGT 60.049 61.111 1.90 0.00 0.00 4.18
1390 1616 0.246910 GGTCAAGTTCTCGTCCCCTC 59.753 60.000 0.00 0.00 0.00 4.30
1395 1621 1.911766 GTTCTCGTCCCCTCCACCA 60.912 63.158 0.00 0.00 0.00 4.17
1506 1732 0.743345 GCTTCTTATGGGACGCCGTT 60.743 55.000 0.00 0.00 0.00 4.44
1532 1758 1.541118 TGCAGGAAGGTGATGGGGA 60.541 57.895 0.00 0.00 0.00 4.81
1562 1788 4.408993 TTCGTCAACTCAATTGCATCTG 57.591 40.909 0.00 0.00 38.29 2.90
1592 1818 1.462616 TCACATTTCCTGGATTGCGG 58.537 50.000 0.00 0.00 0.00 5.69
1680 1906 1.209504 TGGTTCGGATTGGATCAGTCC 59.790 52.381 0.00 0.00 45.31 3.85
1741 1967 1.920272 GCAAGGTTCGTGCTTTTCGAC 60.920 52.381 0.00 0.00 39.00 4.20
1804 2030 0.889186 ATGCGTGTCCACTTGGTTCC 60.889 55.000 0.00 0.00 36.34 3.62
1826 2052 9.541143 GTTCCCTTTTTCATTCATGTTCTTAAA 57.459 29.630 0.00 0.00 0.00 1.52
1836 2062 7.339976 TCATTCATGTTCTTAAATGGATCTGCA 59.660 33.333 0.00 0.00 31.53 4.41
1861 2087 5.475909 ACTGCATGTGAGAACAATTTGAGAT 59.524 36.000 2.79 0.00 0.00 2.75
1938 2273 3.583966 AGATTTGGTGGGTGAATTGCATT 59.416 39.130 0.00 0.00 0.00 3.56
1988 2323 5.304686 TGAGGTTCAAGTGTTGATTAGGT 57.695 39.130 0.00 0.00 39.84 3.08
2007 2342 0.902531 TAGTGCTGGTTCCTAGTGCC 59.097 55.000 0.00 0.00 0.00 5.01
2123 2458 7.113658 TCACACCTTTTAGCTCCTATAGAAG 57.886 40.000 0.00 0.00 0.00 2.85
2264 2605 8.442632 TGTTTGAATTGATTATAGCCTCTCAG 57.557 34.615 0.00 0.00 0.00 3.35
2458 2800 4.104086 AGTGATAGGAGTTGTGATTGGGA 58.896 43.478 0.00 0.00 0.00 4.37
2654 2996 5.473846 TGGCGTTAGATTTTGTAATGGTTGA 59.526 36.000 0.00 0.00 0.00 3.18
2657 2999 6.033513 GCGTTAGATTTTGTAATGGTTGAAGC 59.966 38.462 0.00 0.00 0.00 3.86
2673 3015 6.152661 TGGTTGAAGCATTTCTAATTGTAGGG 59.847 38.462 0.00 0.00 34.31 3.53
2868 3210 8.100791 ACTATAATACTTTGAAGGCAAGACACA 58.899 33.333 0.00 0.00 35.04 3.72
2869 3211 5.695851 AATACTTTGAAGGCAAGACACAG 57.304 39.130 0.00 0.00 35.04 3.66
2908 3250 8.682936 AAAAATATCGATAGCCAGAGTCATTT 57.317 30.769 11.41 0.89 0.00 2.32
2909 3251 8.682936 AAAATATCGATAGCCAGAGTCATTTT 57.317 30.769 11.41 6.79 0.00 1.82
2910 3252 8.682936 AAATATCGATAGCCAGAGTCATTTTT 57.317 30.769 11.41 0.00 0.00 1.94
2948 3290 1.780919 CCTAATTCTAAGGGGGTGGGG 59.219 57.143 0.00 0.00 0.00 4.96
2949 3291 1.145119 CTAATTCTAAGGGGGTGGGGC 59.855 57.143 0.00 0.00 0.00 5.80
2965 3307 2.282827 GGCCGGGCCTTATTTTGTT 58.717 52.632 30.86 0.00 46.69 2.83
2966 3308 0.174845 GGCCGGGCCTTATTTTGTTC 59.825 55.000 30.86 0.00 46.69 3.18
2967 3309 0.174845 GCCGGGCCTTATTTTGTTCC 59.825 55.000 8.12 0.00 0.00 3.62
2968 3310 1.551452 CCGGGCCTTATTTTGTTCCA 58.449 50.000 0.84 0.00 0.00 3.53
2969 3311 1.896465 CCGGGCCTTATTTTGTTCCAA 59.104 47.619 0.84 0.00 0.00 3.53
2971 3313 3.702045 CCGGGCCTTATTTTGTTCCAATA 59.298 43.478 0.84 0.00 0.00 1.90
2972 3314 4.160626 CCGGGCCTTATTTTGTTCCAATAA 59.839 41.667 0.84 0.00 0.00 1.40
2973 3315 5.337652 CCGGGCCTTATTTTGTTCCAATAAA 60.338 40.000 0.84 0.00 0.00 1.40
2974 3316 6.166982 CGGGCCTTATTTTGTTCCAATAAAA 58.833 36.000 0.84 0.00 34.31 1.52
2975 3317 6.821160 CGGGCCTTATTTTGTTCCAATAAAAT 59.179 34.615 0.84 10.47 40.93 1.82
2977 3319 7.826744 GGGCCTTATTTTGTTCCAATAAAATCA 59.173 33.333 0.84 0.75 39.42 2.57
2978 3320 9.225436 GGCCTTATTTTGTTCCAATAAAATCAA 57.775 29.630 9.31 4.28 39.42 2.57
2982 3324 9.784531 TTATTTTGTTCCAATAAAATCAAGCCA 57.215 25.926 9.31 0.00 39.42 4.75
2984 3326 5.798125 TGTTCCAATAAAATCAAGCCACA 57.202 34.783 0.00 0.00 0.00 4.17
2985 3327 6.357579 TGTTCCAATAAAATCAAGCCACAT 57.642 33.333 0.00 0.00 0.00 3.21
2986 3328 7.473735 TGTTCCAATAAAATCAAGCCACATA 57.526 32.000 0.00 0.00 0.00 2.29
2987 3329 8.076910 TGTTCCAATAAAATCAAGCCACATAT 57.923 30.769 0.00 0.00 0.00 1.78
2988 3330 7.980662 TGTTCCAATAAAATCAAGCCACATATG 59.019 33.333 0.00 0.00 0.00 1.78
2990 3332 5.403166 CCAATAAAATCAAGCCACATATGCG 59.597 40.000 1.58 0.00 0.00 4.73
2991 3333 3.441496 AAAATCAAGCCACATATGCGG 57.559 42.857 5.33 5.33 0.00 5.69
2992 3334 1.321474 AATCAAGCCACATATGCGGG 58.679 50.000 11.69 10.35 0.00 6.13
2994 3336 0.179048 TCAAGCCACATATGCGGGAG 60.179 55.000 16.14 6.68 0.00 4.30
3008 3350 4.916293 GGAGCATCGATGGGCGCA 62.916 66.667 26.00 5.70 40.61 6.09
3009 3351 2.667536 GAGCATCGATGGGCGCAT 60.668 61.111 26.00 17.19 40.61 4.73
3010 3352 2.962827 GAGCATCGATGGGCGCATG 61.963 63.158 26.00 13.13 40.61 4.06
3012 3354 4.379143 CATCGATGGGCGCATGCG 62.379 66.667 34.83 34.83 44.10 4.73
3030 3372 3.710722 CGGGGAGCAGGCAAGTCT 61.711 66.667 0.00 0.00 0.00 3.24
3031 3373 2.270527 GGGGAGCAGGCAAGTCTC 59.729 66.667 0.00 0.00 0.00 3.36
3032 3374 2.125350 GGGAGCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
3033 3375 2.659610 GGAGCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
3034 3376 1.004440 GGAGCAGGCAAGTCTCGTT 60.004 57.895 0.00 0.00 0.00 3.85
3125 3504 0.474184 ACAAATATGCGCCCCTAGCT 59.526 50.000 4.18 0.00 40.39 3.32
3238 3617 0.533755 CAACTCTGGATCCGATGGGC 60.534 60.000 7.39 0.00 0.00 5.36
3630 5372 1.403780 GCCGTACGATGGAGAAGTTGT 60.404 52.381 18.76 0.00 0.00 3.32
3639 5402 0.610232 GGAGAAGTTGTGCCATGCCT 60.610 55.000 0.00 0.00 0.00 4.75
3949 5941 9.322773 CTATGTGTGTTGATCTAGATGAAATGT 57.677 33.333 10.74 0.00 0.00 2.71
4075 6069 4.760047 GACGCATCCGGGCACTGT 62.760 66.667 0.00 0.00 39.22 3.55
4077 6071 4.758251 CGCATCCGGGCACTGTGA 62.758 66.667 12.86 0.00 0.00 3.58
4083 6081 0.177836 TCCGGGCACTGTGACATATG 59.822 55.000 16.72 0.00 0.00 1.78
4119 6326 2.232696 TGAGTTGCGGTTGTAGATGCTA 59.767 45.455 0.00 0.00 0.00 3.49
4345 6553 6.894682 TGGTATGCTAACACATTCTTATGGA 58.105 36.000 0.00 0.00 36.01 3.41
4348 6556 8.850156 GGTATGCTAACACATTCTTATGGATTT 58.150 33.333 0.00 0.00 36.01 2.17
4461 6677 5.437060 GTTCTATCTGCCCCATTGAACTTA 58.563 41.667 0.00 0.00 34.84 2.24
4612 6832 1.463674 GGGTTATCAGCCCTTGTGTG 58.536 55.000 0.00 0.00 42.81 3.82
4717 6937 0.465460 TGACCCACTTGTTGCTCCAC 60.465 55.000 0.00 0.00 0.00 4.02
4718 6938 0.465460 GACCCACTTGTTGCTCCACA 60.465 55.000 0.00 0.00 0.00 4.17
4719 6939 0.185901 ACCCACTTGTTGCTCCACAT 59.814 50.000 0.00 0.00 0.00 3.21
4720 6940 1.331214 CCCACTTGTTGCTCCACATT 58.669 50.000 0.00 0.00 0.00 2.71
4721 6941 1.000060 CCCACTTGTTGCTCCACATTG 60.000 52.381 0.00 0.00 0.00 2.82
5002 7232 2.298163 CCTCTTGGCAGCAACTTCATTT 59.702 45.455 0.00 0.00 0.00 2.32
5098 7328 7.726291 CCTCTTTATCTACCTGATGAAGTAGGA 59.274 40.741 15.15 0.00 44.38 2.94
5119 7349 4.567747 GGATCTACATTTGACACAAGGGGT 60.568 45.833 0.00 0.00 0.00 4.95
5173 7403 0.850100 TTGTTGGCTCCTTTCAGGGA 59.150 50.000 0.00 0.00 35.59 4.20
5250 7480 8.725148 AGTTCAACATCTTATCACATTGTCTTC 58.275 33.333 0.00 0.00 0.00 2.87
5303 7533 4.540099 TCCCTCATCATTTCACTTTACCCT 59.460 41.667 0.00 0.00 0.00 4.34
5401 7631 4.219725 AGTGCTCACTTTACTTCTCTCTCC 59.780 45.833 0.00 0.00 38.83 3.71
5445 7675 1.066645 GGTACACCCCCTCACTAAACG 60.067 57.143 0.00 0.00 0.00 3.60
5446 7676 1.620323 GTACACCCCCTCACTAAACGT 59.380 52.381 0.00 0.00 0.00 3.99
5447 7677 2.014010 ACACCCCCTCACTAAACGTA 57.986 50.000 0.00 0.00 0.00 3.57
5451 7681 4.718276 ACACCCCCTCACTAAACGTATATT 59.282 41.667 0.00 0.00 0.00 1.28
5452 7682 5.054477 CACCCCCTCACTAAACGTATATTG 58.946 45.833 0.00 0.00 0.00 1.90
5453 7683 4.102054 ACCCCCTCACTAAACGTATATTGG 59.898 45.833 0.00 0.00 0.00 3.16
5454 7684 4.504340 CCCCCTCACTAAACGTATATTGGG 60.504 50.000 0.00 0.00 0.00 4.12
5455 7685 4.102054 CCCCTCACTAAACGTATATTGGGT 59.898 45.833 0.00 0.00 0.00 4.51
5463 7697 8.362639 CACTAAACGTATATTGGGTAGTATGGT 58.637 37.037 0.00 0.00 0.00 3.55
5468 7702 8.026396 ACGTATATTGGGTAGTATGGTCTTTT 57.974 34.615 0.00 0.00 0.00 2.27
5478 7712 6.148976 GGTAGTATGGTCTTTTCACAAGAACC 59.851 42.308 0.00 0.00 33.14 3.62
5487 7721 6.884836 GTCTTTTCACAAGAACCTATACCCAT 59.115 38.462 0.00 0.00 32.39 4.00
5496 7730 7.611855 ACAAGAACCTATACCCATTTCTCTTTG 59.388 37.037 0.00 0.00 0.00 2.77
5607 7845 0.811616 GGCACCGCCTTGTCTATGAG 60.812 60.000 0.00 0.00 46.69 2.90
5610 7848 0.824759 ACCGCCTTGTCTATGAGGAC 59.175 55.000 0.00 0.00 34.91 3.85
5618 7856 5.623824 GCCTTGTCTATGAGGACGTTTCTAA 60.624 44.000 0.00 0.00 38.91 2.10
5624 7862 6.196724 GTCTATGAGGACGTTTCTAATCGTTG 59.803 42.308 0.00 0.00 40.39 4.10
5687 7926 1.427368 TGCCAGAACACAAGGGGTAAT 59.573 47.619 0.00 0.00 0.00 1.89
5688 7927 2.645297 TGCCAGAACACAAGGGGTAATA 59.355 45.455 0.00 0.00 0.00 0.98
5689 7928 3.268334 TGCCAGAACACAAGGGGTAATAT 59.732 43.478 0.00 0.00 0.00 1.28
5690 7929 4.264172 TGCCAGAACACAAGGGGTAATATT 60.264 41.667 0.00 0.00 0.00 1.28
5691 7930 4.709886 GCCAGAACACAAGGGGTAATATTT 59.290 41.667 0.00 0.00 0.00 1.40
5692 7931 5.889289 GCCAGAACACAAGGGGTAATATTTA 59.111 40.000 0.00 0.00 0.00 1.40
5693 7932 6.039382 GCCAGAACACAAGGGGTAATATTTAG 59.961 42.308 0.00 0.00 0.00 1.85
5694 7933 6.546034 CCAGAACACAAGGGGTAATATTTAGG 59.454 42.308 0.00 0.00 0.00 2.69
5695 7934 6.039382 CAGAACACAAGGGGTAATATTTAGGC 59.961 42.308 0.00 0.00 0.00 3.93
5696 7935 4.457466 ACACAAGGGGTAATATTTAGGCG 58.543 43.478 0.00 0.00 0.00 5.52
5697 7936 4.080186 ACACAAGGGGTAATATTTAGGCGT 60.080 41.667 0.00 0.00 0.00 5.68
5698 7937 4.885325 CACAAGGGGTAATATTTAGGCGTT 59.115 41.667 0.00 0.00 0.00 4.84
5699 7938 4.885325 ACAAGGGGTAATATTTAGGCGTTG 59.115 41.667 0.00 0.00 0.00 4.10
5700 7939 4.783560 AGGGGTAATATTTAGGCGTTGT 57.216 40.909 0.00 0.00 0.00 3.32
5701 7940 5.120054 AGGGGTAATATTTAGGCGTTGTT 57.880 39.130 0.00 0.00 0.00 2.83
5702 7941 5.512298 AGGGGTAATATTTAGGCGTTGTTT 58.488 37.500 0.00 0.00 0.00 2.83
5703 7942 5.358725 AGGGGTAATATTTAGGCGTTGTTTG 59.641 40.000 0.00 0.00 0.00 2.93
5704 7943 5.450826 GGGGTAATATTTAGGCGTTGTTTGG 60.451 44.000 0.00 0.00 0.00 3.28
5705 7944 5.038683 GGTAATATTTAGGCGTTGTTTGGC 58.961 41.667 0.00 0.00 0.00 4.52
5706 7945 5.163591 GGTAATATTTAGGCGTTGTTTGGCT 60.164 40.000 0.00 0.00 45.16 4.75
5707 7946 6.038492 GGTAATATTTAGGCGTTGTTTGGCTA 59.962 38.462 0.00 0.00 42.80 3.93
5708 7947 5.751243 ATATTTAGGCGTTGTTTGGCTAG 57.249 39.130 0.00 0.00 44.10 3.42
5709 7948 1.161843 TTAGGCGTTGTTTGGCTAGC 58.838 50.000 6.04 6.04 44.10 3.42
5710 7949 0.035598 TAGGCGTTGTTTGGCTAGCA 59.964 50.000 18.24 0.00 42.80 3.49
5711 7950 1.210155 GGCGTTGTTTGGCTAGCAG 59.790 57.895 18.24 0.00 0.00 4.24
5712 7951 1.234615 GGCGTTGTTTGGCTAGCAGA 61.235 55.000 18.24 0.42 0.00 4.26
5713 7952 0.804989 GCGTTGTTTGGCTAGCAGAT 59.195 50.000 18.24 0.00 0.00 2.90
5714 7953 1.466360 GCGTTGTTTGGCTAGCAGATG 60.466 52.381 18.24 2.01 0.00 2.90
5715 7954 1.806542 CGTTGTTTGGCTAGCAGATGT 59.193 47.619 18.24 0.00 0.00 3.06
5716 7955 2.226437 CGTTGTTTGGCTAGCAGATGTT 59.774 45.455 18.24 0.00 0.00 2.71
5717 7956 3.435327 CGTTGTTTGGCTAGCAGATGTTA 59.565 43.478 18.24 0.00 0.00 2.41
5718 7957 4.436050 CGTTGTTTGGCTAGCAGATGTTAG 60.436 45.833 18.24 0.00 32.83 2.34
5723 7962 1.212616 GCTAGCAGATGTTAGCCACG 58.787 55.000 15.45 0.00 45.35 4.94
5724 7963 1.858091 CTAGCAGATGTTAGCCACGG 58.142 55.000 0.00 0.00 0.00 4.94
5725 7964 0.464036 TAGCAGATGTTAGCCACGGG 59.536 55.000 0.00 0.00 0.00 5.28
5726 7965 1.220749 GCAGATGTTAGCCACGGGA 59.779 57.895 0.00 0.00 0.00 5.14
5727 7966 0.392461 GCAGATGTTAGCCACGGGAA 60.392 55.000 0.00 0.00 0.00 3.97
5728 7967 1.747206 GCAGATGTTAGCCACGGGAAT 60.747 52.381 0.00 0.00 0.00 3.01
5729 7968 2.484770 GCAGATGTTAGCCACGGGAATA 60.485 50.000 0.00 0.00 0.00 1.75
5730 7969 3.807209 GCAGATGTTAGCCACGGGAATAT 60.807 47.826 0.00 0.00 0.00 1.28
5731 7970 4.562757 GCAGATGTTAGCCACGGGAATATA 60.563 45.833 0.00 0.00 0.00 0.86
5732 7971 5.734720 CAGATGTTAGCCACGGGAATATAT 58.265 41.667 0.00 0.00 0.00 0.86
5733 7972 6.629515 GCAGATGTTAGCCACGGGAATATATA 60.630 42.308 0.00 0.00 0.00 0.86
5734 7973 7.327975 CAGATGTTAGCCACGGGAATATATAA 58.672 38.462 0.00 0.00 0.00 0.98
5735 7974 7.822334 CAGATGTTAGCCACGGGAATATATAAA 59.178 37.037 0.00 0.00 0.00 1.40
5736 7975 8.380099 AGATGTTAGCCACGGGAATATATAAAA 58.620 33.333 0.00 0.00 0.00 1.52
5737 7976 7.733402 TGTTAGCCACGGGAATATATAAAAC 57.267 36.000 0.00 0.00 0.00 2.43
5738 7977 6.424509 TGTTAGCCACGGGAATATATAAAACG 59.575 38.462 0.00 0.00 0.00 3.60
5739 7978 5.217978 AGCCACGGGAATATATAAAACGA 57.782 39.130 0.00 0.00 0.00 3.85
5740 7979 5.235516 AGCCACGGGAATATATAAAACGAG 58.764 41.667 0.00 0.00 0.00 4.18
5741 7980 4.992951 GCCACGGGAATATATAAAACGAGT 59.007 41.667 0.00 0.00 0.00 4.18
5742 7981 5.467735 GCCACGGGAATATATAAAACGAGTT 59.532 40.000 0.00 0.00 0.00 3.01
5743 7982 6.017687 GCCACGGGAATATATAAAACGAGTTT 60.018 38.462 0.00 0.00 0.00 2.66
5744 7983 7.570161 CCACGGGAATATATAAAACGAGTTTC 58.430 38.462 1.39 0.00 31.45 2.78
5745 7984 7.440255 CCACGGGAATATATAAAACGAGTTTCT 59.560 37.037 1.39 0.00 31.45 2.52
5746 7985 9.467258 CACGGGAATATATAAAACGAGTTTCTA 57.533 33.333 1.39 0.00 31.45 2.10
5747 7986 9.688592 ACGGGAATATATAAAACGAGTTTCTAG 57.311 33.333 1.39 0.00 31.45 2.43
5748 7987 8.645487 CGGGAATATATAAAACGAGTTTCTAGC 58.355 37.037 1.39 0.00 31.45 3.42
5749 7988 9.708092 GGGAATATATAAAACGAGTTTCTAGCT 57.292 33.333 1.39 0.00 31.45 3.32
5755 7994 7.907214 ATAAAACGAGTTTCTAGCTGATGTT 57.093 32.000 0.00 0.00 31.45 2.71
5756 7995 6.619801 AAAACGAGTTTCTAGCTGATGTTT 57.380 33.333 0.00 0.00 31.45 2.83
5757 7996 7.724305 AAAACGAGTTTCTAGCTGATGTTTA 57.276 32.000 0.00 0.00 31.45 2.01
5758 7997 6.952935 AACGAGTTTCTAGCTGATGTTTAG 57.047 37.500 0.00 0.00 0.00 1.85
5759 7998 4.865365 ACGAGTTTCTAGCTGATGTTTAGC 59.135 41.667 0.00 0.00 41.43 3.09
5760 7999 4.864806 CGAGTTTCTAGCTGATGTTTAGCA 59.135 41.667 0.00 0.00 43.53 3.49
5761 8000 5.348724 CGAGTTTCTAGCTGATGTTTAGCAA 59.651 40.000 0.00 0.00 43.53 3.91
5762 8001 6.128553 CGAGTTTCTAGCTGATGTTTAGCAAA 60.129 38.462 0.00 0.00 43.53 3.68
5763 8002 7.510549 AGTTTCTAGCTGATGTTTAGCAAAA 57.489 32.000 0.00 0.00 43.53 2.44
5764 8003 7.940850 AGTTTCTAGCTGATGTTTAGCAAAAA 58.059 30.769 0.00 0.00 43.53 1.94
5765 8004 7.862873 AGTTTCTAGCTGATGTTTAGCAAAAAC 59.137 33.333 0.00 7.53 43.53 2.43
5766 8005 7.510549 TTCTAGCTGATGTTTAGCAAAAACT 57.489 32.000 13.72 2.70 43.53 2.66
5767 8006 6.902341 TCTAGCTGATGTTTAGCAAAAACTG 58.098 36.000 13.72 5.36 43.53 3.16
5768 8007 4.874970 AGCTGATGTTTAGCAAAAACTGG 58.125 39.130 13.72 5.10 43.53 4.00
5769 8008 4.342092 AGCTGATGTTTAGCAAAAACTGGT 59.658 37.500 13.72 6.44 43.53 4.00
5770 8009 5.049828 GCTGATGTTTAGCAAAAACTGGTT 58.950 37.500 13.72 0.00 40.81 3.67
5771 8010 5.523552 GCTGATGTTTAGCAAAAACTGGTTT 59.476 36.000 13.72 0.00 40.81 3.27
5772 8011 6.037062 GCTGATGTTTAGCAAAAACTGGTTTT 59.963 34.615 13.72 0.00 43.88 2.43
5773 8012 7.223777 GCTGATGTTTAGCAAAAACTGGTTTTA 59.776 33.333 11.15 0.00 41.45 1.52
5774 8013 8.413899 TGATGTTTAGCAAAAACTGGTTTTAC 57.586 30.769 11.15 0.00 41.45 2.01
5775 8014 8.254508 TGATGTTTAGCAAAAACTGGTTTTACT 58.745 29.630 8.58 8.58 41.45 2.24
5776 8015 9.738832 GATGTTTAGCAAAAACTGGTTTTACTA 57.261 29.630 11.15 6.74 41.45 1.82
5778 8017 9.924650 TGTTTAGCAAAAACTGGTTTTACTAAA 57.075 25.926 23.02 23.02 41.94 1.85
5784 8023 9.416058 GCAAAAACTGGTTTTACTAAATTTTCG 57.584 29.630 11.15 0.00 41.45 3.46
5785 8024 9.909043 CAAAAACTGGTTTTACTAAATTTTCGG 57.091 29.630 11.15 0.00 41.45 4.30
5786 8025 9.656040 AAAAACTGGTTTTACTAAATTTTCGGT 57.344 25.926 11.15 0.00 41.45 4.69
5787 8026 9.656040 AAAACTGGTTTTACTAAATTTTCGGTT 57.344 25.926 9.35 0.00 40.61 4.44
5800 8039 9.370126 CTAAATTTTCGGTTAATAATCAGCTCG 57.630 33.333 0.00 0.00 0.00 5.03
5801 8040 6.920569 ATTTTCGGTTAATAATCAGCTCGT 57.079 33.333 0.00 0.00 0.00 4.18
5802 8041 5.712217 TTTCGGTTAATAATCAGCTCGTG 57.288 39.130 0.00 0.00 0.00 4.35
5803 8042 4.642445 TCGGTTAATAATCAGCTCGTGA 57.358 40.909 0.00 0.00 40.38 4.35
5804 8043 5.001237 TCGGTTAATAATCAGCTCGTGAA 57.999 39.130 0.00 0.00 39.19 3.18
5805 8044 5.412640 TCGGTTAATAATCAGCTCGTGAAA 58.587 37.500 0.00 0.00 39.19 2.69
5806 8045 5.870433 TCGGTTAATAATCAGCTCGTGAAAA 59.130 36.000 0.00 0.00 39.19 2.29
5807 8046 6.369340 TCGGTTAATAATCAGCTCGTGAAAAA 59.631 34.615 0.00 0.00 39.19 1.94
5808 8047 6.464834 CGGTTAATAATCAGCTCGTGAAAAAC 59.535 38.462 0.00 0.00 39.19 2.43
5809 8048 7.527457 GGTTAATAATCAGCTCGTGAAAAACT 58.473 34.615 0.00 0.00 39.19 2.66
5810 8049 8.021396 GGTTAATAATCAGCTCGTGAAAAACTT 58.979 33.333 0.00 0.00 39.19 2.66
5811 8050 9.394477 GTTAATAATCAGCTCGTGAAAAACTTT 57.606 29.630 0.00 0.00 39.19 2.66
5812 8051 7.858052 AATAATCAGCTCGTGAAAAACTTTG 57.142 32.000 0.00 0.00 39.19 2.77
5813 8052 4.900635 ATCAGCTCGTGAAAAACTTTGT 57.099 36.364 0.00 0.00 39.19 2.83
5814 8053 4.695217 TCAGCTCGTGAAAAACTTTGTT 57.305 36.364 0.00 0.00 29.64 2.83
5815 8054 5.054390 TCAGCTCGTGAAAAACTTTGTTT 57.946 34.783 0.00 0.00 29.64 2.83
5816 8055 4.856487 TCAGCTCGTGAAAAACTTTGTTTG 59.144 37.500 0.00 0.00 29.64 2.93
5817 8056 4.031652 CAGCTCGTGAAAAACTTTGTTTGG 59.968 41.667 0.00 0.00 0.00 3.28
5818 8057 4.082463 AGCTCGTGAAAAACTTTGTTTGGA 60.082 37.500 0.00 0.00 0.00 3.53
5819 8058 4.031314 GCTCGTGAAAAACTTTGTTTGGAC 59.969 41.667 0.00 0.00 0.00 4.02
5820 8059 5.379732 TCGTGAAAAACTTTGTTTGGACT 57.620 34.783 0.00 0.00 0.00 3.85
5821 8060 6.497785 TCGTGAAAAACTTTGTTTGGACTA 57.502 33.333 0.00 0.00 0.00 2.59
5822 8061 6.548171 TCGTGAAAAACTTTGTTTGGACTAG 58.452 36.000 0.00 0.00 0.00 2.57
5823 8062 6.372103 TCGTGAAAAACTTTGTTTGGACTAGA 59.628 34.615 0.00 0.00 0.00 2.43
5824 8063 7.024768 CGTGAAAAACTTTGTTTGGACTAGAA 58.975 34.615 0.00 0.00 0.00 2.10
5825 8064 7.539366 CGTGAAAAACTTTGTTTGGACTAGAAA 59.461 33.333 0.00 0.00 0.00 2.52
5826 8065 9.198837 GTGAAAAACTTTGTTTGGACTAGAAAA 57.801 29.630 0.00 0.00 0.00 2.29
5827 8066 9.765795 TGAAAAACTTTGTTTGGACTAGAAAAA 57.234 25.926 0.00 0.00 0.00 1.94
5829 8068 7.806149 AAACTTTGTTTGGACTAGAAAAACG 57.194 32.000 0.00 0.00 36.75 3.60
5830 8069 5.337554 ACTTTGTTTGGACTAGAAAAACGC 58.662 37.500 0.00 0.00 36.75 4.84
5831 8070 4.966965 TTGTTTGGACTAGAAAAACGCA 57.033 36.364 0.00 0.00 36.75 5.24
5832 8071 4.966965 TGTTTGGACTAGAAAAACGCAA 57.033 36.364 0.00 0.00 36.75 4.85
5833 8072 5.508200 TGTTTGGACTAGAAAAACGCAAT 57.492 34.783 0.00 0.00 36.75 3.56
5834 8073 5.897050 TGTTTGGACTAGAAAAACGCAATT 58.103 33.333 0.00 0.00 36.75 2.32
5835 8074 5.974751 TGTTTGGACTAGAAAAACGCAATTC 59.025 36.000 0.00 0.00 36.75 2.17
5836 8075 6.183360 TGTTTGGACTAGAAAAACGCAATTCT 60.183 34.615 0.00 3.20 39.19 2.40
5837 8076 7.012515 TGTTTGGACTAGAAAAACGCAATTCTA 59.987 33.333 0.00 4.85 37.16 2.10
5843 8082 4.546570 AGAAAAACGCAATTCTAGTTGGC 58.453 39.130 0.00 0.00 34.24 4.52
5844 8083 3.297830 AAAACGCAATTCTAGTTGGCC 57.702 42.857 0.00 0.00 0.00 5.36
5845 8084 1.173913 AACGCAATTCTAGTTGGCCC 58.826 50.000 0.00 0.00 0.00 5.80
5846 8085 0.037590 ACGCAATTCTAGTTGGCCCA 59.962 50.000 0.00 0.00 0.00 5.36
5847 8086 0.734889 CGCAATTCTAGTTGGCCCAG 59.265 55.000 0.00 0.00 0.00 4.45
5848 8087 1.839424 GCAATTCTAGTTGGCCCAGT 58.161 50.000 0.00 0.00 0.00 4.00
5849 8088 1.474077 GCAATTCTAGTTGGCCCAGTG 59.526 52.381 0.00 0.00 0.00 3.66
5850 8089 1.474077 CAATTCTAGTTGGCCCAGTGC 59.526 52.381 0.00 0.00 40.16 4.40
5859 8098 3.369921 GCCCAGTGCCTTCTTTGG 58.630 61.111 0.00 0.00 0.00 3.28
5860 8099 1.228552 GCCCAGTGCCTTCTTTGGA 60.229 57.895 0.00 0.00 32.34 3.53
5861 8100 0.613012 GCCCAGTGCCTTCTTTGGAT 60.613 55.000 0.00 0.00 32.34 3.41
5862 8101 1.340991 GCCCAGTGCCTTCTTTGGATA 60.341 52.381 0.00 0.00 32.34 2.59
5863 8102 2.648059 CCCAGTGCCTTCTTTGGATAG 58.352 52.381 0.00 0.00 32.34 2.08
5864 8103 2.019984 CCAGTGCCTTCTTTGGATAGC 58.980 52.381 0.00 0.00 32.34 2.97
5865 8104 2.618816 CCAGTGCCTTCTTTGGATAGCA 60.619 50.000 0.00 0.00 32.34 3.49
5866 8105 3.084039 CAGTGCCTTCTTTGGATAGCAA 58.916 45.455 0.00 0.00 33.63 3.91
5867 8106 3.698040 CAGTGCCTTCTTTGGATAGCAAT 59.302 43.478 0.00 0.00 33.63 3.56
5868 8107 4.159135 CAGTGCCTTCTTTGGATAGCAATT 59.841 41.667 0.00 0.00 33.63 2.32
5869 8108 5.357878 CAGTGCCTTCTTTGGATAGCAATTA 59.642 40.000 0.00 0.00 33.63 1.40
5870 8109 5.591877 AGTGCCTTCTTTGGATAGCAATTAG 59.408 40.000 0.00 0.00 33.63 1.73
5871 8110 4.339247 TGCCTTCTTTGGATAGCAATTAGC 59.661 41.667 0.00 0.00 46.19 3.09
5873 8112 4.889409 CCTTCTTTGGATAGCAATTAGCCA 59.111 41.667 0.00 0.00 45.83 4.75
5874 8113 5.537674 CCTTCTTTGGATAGCAATTAGCCAT 59.462 40.000 0.00 0.00 46.66 4.40
5875 8114 6.041296 CCTTCTTTGGATAGCAATTAGCCATT 59.959 38.462 0.00 0.00 46.66 3.16
5876 8115 6.639632 TCTTTGGATAGCAATTAGCCATTC 57.360 37.500 0.00 0.00 46.66 2.67
5877 8116 5.239306 TCTTTGGATAGCAATTAGCCATTCG 59.761 40.000 0.00 0.00 46.66 3.34
5878 8117 4.085357 TGGATAGCAATTAGCCATTCGT 57.915 40.909 0.00 0.00 42.76 3.85
5879 8118 5.222079 TGGATAGCAATTAGCCATTCGTA 57.778 39.130 0.00 0.00 42.76 3.43
5880 8119 5.804639 TGGATAGCAATTAGCCATTCGTAT 58.195 37.500 0.00 0.00 42.76 3.06
5881 8120 6.237901 TGGATAGCAATTAGCCATTCGTATT 58.762 36.000 0.00 0.00 42.76 1.89
5882 8121 6.714810 TGGATAGCAATTAGCCATTCGTATTT 59.285 34.615 0.00 0.00 42.76 1.40
5883 8122 7.094805 TGGATAGCAATTAGCCATTCGTATTTC 60.095 37.037 0.00 0.00 42.76 2.17
5885 8124 4.219033 GCAATTAGCCATTCGTATTTCCG 58.781 43.478 0.00 0.00 37.23 4.30
5886 8125 4.261031 GCAATTAGCCATTCGTATTTCCGT 60.261 41.667 0.00 0.00 37.23 4.69
5887 8126 5.440685 CAATTAGCCATTCGTATTTCCGTC 58.559 41.667 0.00 0.00 0.00 4.79
5888 8127 1.949465 AGCCATTCGTATTTCCGTCC 58.051 50.000 0.00 0.00 0.00 4.79
5889 8128 0.580104 GCCATTCGTATTTCCGTCCG 59.420 55.000 0.00 0.00 0.00 4.79
5890 8129 1.930567 CCATTCGTATTTCCGTCCGT 58.069 50.000 0.00 0.00 0.00 4.69
5891 8130 2.799207 GCCATTCGTATTTCCGTCCGTA 60.799 50.000 0.00 0.00 0.00 4.02
5892 8131 3.446799 CCATTCGTATTTCCGTCCGTAA 58.553 45.455 0.00 0.00 0.00 3.18
5893 8132 4.053295 CCATTCGTATTTCCGTCCGTAAT 58.947 43.478 0.00 0.00 0.00 1.89
5894 8133 4.508861 CCATTCGTATTTCCGTCCGTAATT 59.491 41.667 0.00 0.00 0.00 1.40
5895 8134 5.691305 CCATTCGTATTTCCGTCCGTAATTA 59.309 40.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.762875 GGATCCGACGACCCCCTT 60.763 66.667 0.00 0.00 0.00 3.95
58 60 2.186644 CCACACGCATGGATCCGA 59.813 61.111 7.39 0.00 43.02 4.55
67 69 4.453136 GGAGTAAAAAGTAATCCACACGCA 59.547 41.667 0.00 0.00 32.43 5.24
146 148 5.521735 TCTGAAGAATCTTTATTCAGCGCTC 59.478 40.000 7.13 0.00 46.11 5.03
172 174 1.305930 AATGGCCTCGTCGGAAAAGC 61.306 55.000 3.32 0.00 33.16 3.51
177 179 1.389609 GGACTAATGGCCTCGTCGGA 61.390 60.000 3.32 0.00 33.16 4.55
191 193 4.502036 TCCATCCCCAATCATAGGACTA 57.498 45.455 0.00 0.00 30.97 2.59
201 203 4.078932 AGTTTCCAAATCCATCCCCAAT 57.921 40.909 0.00 0.00 0.00 3.16
278 281 1.202359 GCAACAACAAAGCCCGAAGAA 60.202 47.619 0.00 0.00 0.00 2.52
281 284 0.532573 TTGCAACAACAAAGCCCGAA 59.467 45.000 0.00 0.00 0.00 4.30
289 292 1.979469 CAAACGTCGTTGCAACAACAA 59.021 42.857 28.01 8.46 0.00 2.83
290 293 1.607713 CAAACGTCGTTGCAACAACA 58.392 45.000 28.01 9.43 0.00 3.33
299 302 2.594962 CGCTGGAGCAAACGTCGTT 61.595 57.895 4.40 4.40 42.21 3.85
378 381 2.101415 CACATGCTCCGTCTTCCAGATA 59.899 50.000 0.00 0.00 0.00 1.98
417 420 4.414846 AGAAGGAAACCATATCTGCCATCT 59.585 41.667 0.00 0.00 0.00 2.90
438 441 2.223876 ACCACGACTAAAACGCTGAAGA 60.224 45.455 0.00 0.00 0.00 2.87
623 629 3.594134 CACAGCAACCACCAAAGAAAAA 58.406 40.909 0.00 0.00 0.00 1.94
657 663 2.288025 ACCAACGCCCGTCACCTAT 61.288 57.895 0.00 0.00 0.00 2.57
721 728 7.637132 CGAACAAAGTACAAGTCACGTAAAAAT 59.363 33.333 0.00 0.00 0.00 1.82
754 761 6.650390 TCATGATAATATGTGTCCCATTCACG 59.350 38.462 0.00 0.00 38.48 4.35
755 762 7.984422 TCATGATAATATGTGTCCCATTCAC 57.016 36.000 0.00 0.00 34.86 3.18
787 794 6.150307 ACGGATAATGTTTTGTATGCTGTGAA 59.850 34.615 0.00 0.00 0.00 3.18
789 796 5.879237 ACGGATAATGTTTTGTATGCTGTG 58.121 37.500 0.00 0.00 0.00 3.66
790 797 5.880332 AGACGGATAATGTTTTGTATGCTGT 59.120 36.000 0.00 0.00 0.00 4.40
791 798 6.363577 AGACGGATAATGTTTTGTATGCTG 57.636 37.500 0.00 0.00 0.00 4.41
792 799 7.391148 AAAGACGGATAATGTTTTGTATGCT 57.609 32.000 0.00 0.00 0.00 3.79
793 800 8.460831 AAAAAGACGGATAATGTTTTGTATGC 57.539 30.769 0.00 0.00 0.00 3.14
818 825 5.062558 GTGCGCTCGAAAATAAGTAGGTAAA 59.937 40.000 9.73 0.00 0.00 2.01
930 937 1.299468 GCTGGTCCATACGAGCGAG 60.299 63.158 0.00 0.00 45.67 5.03
1100 1326 3.430497 AGCTAGGAGGCCGGGAGA 61.430 66.667 2.18 0.00 0.00 3.71
1197 1423 3.072476 CCGGCCCTCCCTATCATG 58.928 66.667 0.00 0.00 0.00 3.07
1532 1758 7.148507 TGCAATTGAGTTGACGAAAATGTTTTT 60.149 29.630 10.34 0.00 40.37 1.94
1562 1788 5.765182 TCCAGGAAATGTGAAGAGAAAACTC 59.235 40.000 0.00 0.00 0.00 3.01
1592 1818 1.776034 GAATCCCGCGCATCAGAACC 61.776 60.000 8.75 0.00 0.00 3.62
1633 1859 2.396955 CGTACTCGTCCAGGCTCGT 61.397 63.158 0.00 0.00 0.00 4.18
1680 1906 0.976641 TGAGAGCCCACTGGTACTTG 59.023 55.000 0.00 0.00 0.00 3.16
1741 1967 1.627834 AGGGAAACTGCAGAGGAGAAG 59.372 52.381 23.35 0.00 0.00 2.85
1804 2030 9.709495 TCCATTTAAGAACATGAATGAAAAAGG 57.291 29.630 0.00 1.55 32.61 3.11
1836 2062 5.300034 TCTCAAATTGTTCTCACATGCAGTT 59.700 36.000 0.00 0.00 31.06 3.16
1938 2273 1.823470 AAGAGCAGCGCAACCACAA 60.823 52.632 11.47 0.00 0.00 3.33
1988 2323 0.902531 GGCACTAGGAACCAGCACTA 59.097 55.000 0.00 0.00 0.00 2.74
2007 2342 8.087982 TGAGATTGACTTTAGTTTTGCAGTAG 57.912 34.615 0.00 0.00 0.00 2.57
2123 2458 2.428530 GCCCAGGGAAATTCTTCATCAC 59.571 50.000 10.89 0.00 32.75 3.06
2264 2605 2.018542 TAAGGCGGACACAAGTATGC 57.981 50.000 0.00 0.00 0.00 3.14
2447 2789 4.656100 TCTCTCCAATTCCCAATCACAA 57.344 40.909 0.00 0.00 0.00 3.33
2449 2791 4.766891 TGTTTCTCTCCAATTCCCAATCAC 59.233 41.667 0.00 0.00 0.00 3.06
2458 2800 8.814038 AGTATTATGCTTGTTTCTCTCCAATT 57.186 30.769 0.00 0.00 0.00 2.32
2654 2996 6.435164 ACATCCCCTACAATTAGAAATGCTT 58.565 36.000 0.00 0.00 0.00 3.91
2657 2999 7.720957 TGATGACATCCCCTACAATTAGAAATG 59.279 37.037 12.90 0.00 0.00 2.32
2673 3015 8.613060 ATCACTATTGTAACATGATGACATCC 57.387 34.615 12.90 0.00 34.15 3.51
2929 3271 1.145119 GCCCCACCCCCTTAGAATTAG 59.855 57.143 0.00 0.00 0.00 1.73
2930 3272 1.228190 GCCCCACCCCCTTAGAATTA 58.772 55.000 0.00 0.00 0.00 1.40
2932 3274 2.012794 GGCCCCACCCCCTTAGAAT 61.013 63.158 0.00 0.00 0.00 2.40
2933 3275 2.615929 GGCCCCACCCCCTTAGAA 60.616 66.667 0.00 0.00 0.00 2.10
2948 3290 0.174845 GGAACAAAATAAGGCCCGGC 59.825 55.000 0.00 0.00 0.00 6.13
2949 3291 1.551452 TGGAACAAAATAAGGCCCGG 58.449 50.000 0.00 0.00 31.92 5.73
2962 3304 5.798125 TGTGGCTTGATTTTATTGGAACA 57.202 34.783 0.00 0.00 0.00 3.18
2963 3305 7.042523 GCATATGTGGCTTGATTTTATTGGAAC 60.043 37.037 4.29 0.00 0.00 3.62
2965 3307 6.514947 GCATATGTGGCTTGATTTTATTGGA 58.485 36.000 4.29 0.00 0.00 3.53
2966 3308 5.403166 CGCATATGTGGCTTGATTTTATTGG 59.597 40.000 8.46 0.00 0.00 3.16
2967 3309 5.403166 CCGCATATGTGGCTTGATTTTATTG 59.597 40.000 21.89 0.00 39.04 1.90
2968 3310 5.509501 CCCGCATATGTGGCTTGATTTTATT 60.510 40.000 26.98 0.00 44.11 1.40
2969 3311 4.022068 CCCGCATATGTGGCTTGATTTTAT 60.022 41.667 26.98 0.00 44.11 1.40
2971 3313 2.101249 CCCGCATATGTGGCTTGATTTT 59.899 45.455 26.98 0.00 44.11 1.82
2972 3314 1.682854 CCCGCATATGTGGCTTGATTT 59.317 47.619 26.98 0.00 44.11 2.17
2973 3315 1.133823 TCCCGCATATGTGGCTTGATT 60.134 47.619 26.98 0.00 44.11 2.57
2974 3316 0.473755 TCCCGCATATGTGGCTTGAT 59.526 50.000 26.98 0.00 44.11 2.57
2975 3317 0.179048 CTCCCGCATATGTGGCTTGA 60.179 55.000 26.98 18.25 44.11 3.02
2977 3319 1.526917 GCTCCCGCATATGTGGCTT 60.527 57.895 26.98 0.00 44.11 4.35
2978 3320 2.111878 GCTCCCGCATATGTGGCT 59.888 61.111 26.98 0.00 44.11 4.75
2979 3321 2.203195 TGCTCCCGCATATGTGGC 60.203 61.111 26.98 17.22 44.11 5.01
2991 3333 4.916293 TGCGCCCATCGATGCTCC 62.916 66.667 20.25 8.74 41.67 4.70
2992 3334 2.667536 ATGCGCCCATCGATGCTC 60.668 61.111 20.25 11.82 41.67 4.26
2994 3336 4.695231 GCATGCGCCCATCGATGC 62.695 66.667 20.25 11.67 41.04 3.91
3014 3356 2.270527 GAGACTTGCCTGCTCCCC 59.729 66.667 0.00 0.00 0.00 4.81
3015 3357 2.125350 CGAGACTTGCCTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
3016 3358 1.004440 AACGAGACTTGCCTGCTCC 60.004 57.895 0.00 0.00 0.00 4.70
3017 3359 1.347817 CGAACGAGACTTGCCTGCTC 61.348 60.000 0.00 0.00 0.00 4.26
3018 3360 1.373497 CGAACGAGACTTGCCTGCT 60.373 57.895 0.00 0.00 0.00 4.24
3019 3361 3.016474 GCGAACGAGACTTGCCTGC 62.016 63.158 0.00 0.00 0.00 4.85
3020 3362 2.383527 GGCGAACGAGACTTGCCTG 61.384 63.158 0.00 0.00 42.44 4.85
3021 3363 2.048127 GGCGAACGAGACTTGCCT 60.048 61.111 0.00 0.00 42.44 4.75
3022 3364 3.119096 GGGCGAACGAGACTTGCC 61.119 66.667 0.00 0.00 44.98 4.52
3023 3365 2.807631 TACGGGCGAACGAGACTTGC 62.808 60.000 6.19 0.00 37.61 4.01
3026 3368 1.310933 ACATACGGGCGAACGAGACT 61.311 55.000 6.19 0.00 37.61 3.24
3027 3369 1.138047 CACATACGGGCGAACGAGAC 61.138 60.000 6.19 0.00 37.61 3.36
3028 3370 1.138036 CACATACGGGCGAACGAGA 59.862 57.895 6.19 0.00 37.61 4.04
3029 3371 1.876714 CCACATACGGGCGAACGAG 60.877 63.158 6.19 0.00 37.61 4.18
3030 3372 2.182284 CCACATACGGGCGAACGA 59.818 61.111 6.19 0.00 37.61 3.85
3031 3373 2.888534 CCCACATACGGGCGAACG 60.889 66.667 0.00 0.00 40.07 3.95
3032 3374 1.812507 GTCCCACATACGGGCGAAC 60.813 63.158 0.00 0.00 46.92 3.95
3033 3375 2.580276 GTCCCACATACGGGCGAA 59.420 61.111 0.00 0.00 46.92 4.70
3034 3376 3.829044 CGTCCCACATACGGGCGA 61.829 66.667 0.00 0.00 46.92 5.54
3125 3504 2.034999 GGTTTGGTCCGGGATGCA 59.965 61.111 0.00 0.00 0.00 3.96
3578 5320 0.320683 CCTTGACGCATCAGTGGTCA 60.321 55.000 0.00 0.00 35.83 4.02
3609 5351 0.892755 AACTTCTCCATCGTACGGCA 59.107 50.000 16.52 0.00 0.00 5.69
3630 5372 0.178967 TTGTCCTTTGAGGCATGGCA 60.179 50.000 22.64 0.00 34.61 4.92
3639 5402 0.392706 TCAGCGCTCTTGTCCTTTGA 59.607 50.000 7.13 0.00 0.00 2.69
3715 5656 4.211330 TGCCCGGGTTTGCTCCAA 62.211 61.111 24.63 0.00 0.00 3.53
3744 5699 6.154706 GGGTCAAGTTAGATCTACTCTTTGGA 59.845 42.308 0.67 3.15 35.28 3.53
3949 5941 3.382865 TGCAAAGTTCAAACCAGCATACA 59.617 39.130 0.00 0.00 0.00 2.29
4062 6056 0.177836 TATGTCACAGTGCCCGGATG 59.822 55.000 0.73 0.00 0.00 3.51
4063 6057 1.131638 ATATGTCACAGTGCCCGGAT 58.868 50.000 0.73 0.00 0.00 4.18
4066 6060 0.815213 CCCATATGTCACAGTGCCCG 60.815 60.000 1.24 0.00 0.00 6.13
4098 6096 1.001974 AGCATCTACAACCGCAACTCA 59.998 47.619 0.00 0.00 0.00 3.41
4345 6553 8.930846 AGATATAGCTAATCCAGTTGCAAAAT 57.069 30.769 0.00 0.00 0.00 1.82
4348 6556 8.090831 CACTAGATATAGCTAATCCAGTTGCAA 58.909 37.037 0.00 0.00 0.00 4.08
4461 6677 5.165961 TCTAAATTGCAGCTACAGAACCT 57.834 39.130 0.00 0.00 0.00 3.50
4576 6796 7.629157 TGATAACCCTGAAGAACACATTCATA 58.371 34.615 0.00 0.00 36.16 2.15
4612 6832 3.554934 TGCATGGAGGTATGATTTGGAC 58.445 45.455 0.00 0.00 0.00 4.02
4650 6870 1.416401 GTCTGAGTGACACCCCTTGAA 59.584 52.381 0.84 0.00 44.73 2.69
5002 7232 3.792401 CTTCACTACACACACAACCTGA 58.208 45.455 0.00 0.00 0.00 3.86
5098 7328 4.657814 ACCCCTTGTGTCAAATGTAGAT 57.342 40.909 0.00 0.00 0.00 1.98
5119 7349 4.871822 TCAGACTCTCCATGATCCAAGTA 58.128 43.478 0.00 0.00 0.00 2.24
5173 7403 1.546029 TGCGTCTCAGATTACAGCAGT 59.454 47.619 0.00 0.00 0.00 4.40
5303 7533 3.415186 GGGATCCAGACCCAGCAA 58.585 61.111 15.23 0.00 46.05 3.91
5328 7558 0.600557 ATGAGATCCGATCACTCGCC 59.399 55.000 11.01 0.00 43.66 5.54
5329 7559 2.057316 CAATGAGATCCGATCACTCGC 58.943 52.381 11.01 0.00 43.66 5.03
5330 7560 2.057316 GCAATGAGATCCGATCACTCG 58.943 52.381 11.01 0.00 44.62 4.18
5331 7561 3.103447 TGCAATGAGATCCGATCACTC 57.897 47.619 11.01 1.38 0.00 3.51
5401 7631 5.858581 CGAAAAGGAGCTCAATAAGTTTTGG 59.141 40.000 17.19 8.24 0.00 3.28
5445 7675 9.269453 GTGAAAAGACCATACTACCCAATATAC 57.731 37.037 0.00 0.00 0.00 1.47
5446 7676 8.994500 TGTGAAAAGACCATACTACCCAATATA 58.006 33.333 0.00 0.00 0.00 0.86
5447 7677 7.867921 TGTGAAAAGACCATACTACCCAATAT 58.132 34.615 0.00 0.00 0.00 1.28
5451 7681 5.308497 TCTTGTGAAAAGACCATACTACCCA 59.692 40.000 0.00 0.00 0.00 4.51
5452 7682 5.801380 TCTTGTGAAAAGACCATACTACCC 58.199 41.667 0.00 0.00 0.00 3.69
5453 7683 6.148976 GGTTCTTGTGAAAAGACCATACTACC 59.851 42.308 0.00 0.00 33.52 3.18
5454 7684 6.935208 AGGTTCTTGTGAAAAGACCATACTAC 59.065 38.462 6.72 0.00 33.52 2.73
5455 7685 7.074653 AGGTTCTTGTGAAAAGACCATACTA 57.925 36.000 6.72 0.00 33.52 1.82
5463 7697 6.442541 TGGGTATAGGTTCTTGTGAAAAGA 57.557 37.500 0.00 0.00 33.52 2.52
5468 7702 6.443849 AGAGAAATGGGTATAGGTTCTTGTGA 59.556 38.462 0.00 0.00 0.00 3.58
5512 7750 5.163478 ACCATACAGAAGTGGGTATACGTTC 60.163 44.000 0.00 0.00 39.86 3.95
5607 7845 4.977741 TTGTCAACGATTAGAAACGTCC 57.022 40.909 0.00 0.00 41.87 4.79
5687 7926 3.375922 GCTAGCCAAACAACGCCTAAATA 59.624 43.478 2.29 0.00 0.00 1.40
5688 7927 2.163613 GCTAGCCAAACAACGCCTAAAT 59.836 45.455 2.29 0.00 0.00 1.40
5689 7928 1.538075 GCTAGCCAAACAACGCCTAAA 59.462 47.619 2.29 0.00 0.00 1.85
5690 7929 1.161843 GCTAGCCAAACAACGCCTAA 58.838 50.000 2.29 0.00 0.00 2.69
5691 7930 0.035598 TGCTAGCCAAACAACGCCTA 59.964 50.000 13.29 0.00 0.00 3.93
5692 7931 1.228124 TGCTAGCCAAACAACGCCT 60.228 52.632 13.29 0.00 0.00 5.52
5693 7932 1.210155 CTGCTAGCCAAACAACGCC 59.790 57.895 13.29 0.00 0.00 5.68
5694 7933 0.804989 ATCTGCTAGCCAAACAACGC 59.195 50.000 13.29 0.00 0.00 4.84
5695 7934 1.806542 ACATCTGCTAGCCAAACAACG 59.193 47.619 13.29 0.00 0.00 4.10
5696 7935 3.923017 AACATCTGCTAGCCAAACAAC 57.077 42.857 13.29 0.00 0.00 3.32
5697 7936 3.440173 GCTAACATCTGCTAGCCAAACAA 59.560 43.478 13.29 0.00 34.56 2.83
5698 7937 3.009723 GCTAACATCTGCTAGCCAAACA 58.990 45.455 13.29 0.00 34.56 2.83
5699 7938 3.682372 GCTAACATCTGCTAGCCAAAC 57.318 47.619 13.29 0.00 34.56 2.93
5704 7943 1.212616 CGTGGCTAACATCTGCTAGC 58.787 55.000 8.10 8.10 38.59 3.42
5705 7944 1.539065 CCCGTGGCTAACATCTGCTAG 60.539 57.143 0.00 0.00 0.00 3.42
5706 7945 0.464036 CCCGTGGCTAACATCTGCTA 59.536 55.000 0.00 0.00 0.00 3.49
5707 7946 1.221840 CCCGTGGCTAACATCTGCT 59.778 57.895 0.00 0.00 0.00 4.24
5708 7947 0.392461 TTCCCGTGGCTAACATCTGC 60.392 55.000 0.00 0.00 0.00 4.26
5709 7948 2.332063 ATTCCCGTGGCTAACATCTG 57.668 50.000 0.00 0.00 0.00 2.90
5710 7949 7.490657 TTATATATTCCCGTGGCTAACATCT 57.509 36.000 0.00 0.00 0.00 2.90
5711 7950 8.448615 GTTTTATATATTCCCGTGGCTAACATC 58.551 37.037 0.00 0.00 0.00 3.06
5712 7951 7.118680 CGTTTTATATATTCCCGTGGCTAACAT 59.881 37.037 0.00 0.00 0.00 2.71
5713 7952 6.424509 CGTTTTATATATTCCCGTGGCTAACA 59.575 38.462 0.00 0.00 0.00 2.41
5714 7953 6.646240 TCGTTTTATATATTCCCGTGGCTAAC 59.354 38.462 0.00 0.00 0.00 2.34
5715 7954 6.757237 TCGTTTTATATATTCCCGTGGCTAA 58.243 36.000 0.00 0.00 0.00 3.09
5716 7955 6.015180 ACTCGTTTTATATATTCCCGTGGCTA 60.015 38.462 0.00 0.00 0.00 3.93
5717 7956 5.217978 TCGTTTTATATATTCCCGTGGCT 57.782 39.130 0.00 0.00 0.00 4.75
5718 7957 4.992951 ACTCGTTTTATATATTCCCGTGGC 59.007 41.667 0.00 0.00 0.00 5.01
5719 7958 7.440255 AGAAACTCGTTTTATATATTCCCGTGG 59.560 37.037 0.00 0.00 32.11 4.94
5720 7959 8.361592 AGAAACTCGTTTTATATATTCCCGTG 57.638 34.615 0.00 0.00 32.11 4.94
5721 7960 9.688592 CTAGAAACTCGTTTTATATATTCCCGT 57.311 33.333 0.00 0.00 32.11 5.28
5722 7961 8.645487 GCTAGAAACTCGTTTTATATATTCCCG 58.355 37.037 0.00 0.00 32.11 5.14
5723 7962 9.708092 AGCTAGAAACTCGTTTTATATATTCCC 57.292 33.333 0.00 0.00 32.11 3.97
5729 7968 9.601217 AACATCAGCTAGAAACTCGTTTTATAT 57.399 29.630 0.00 0.00 32.11 0.86
5730 7969 8.997621 AACATCAGCTAGAAACTCGTTTTATA 57.002 30.769 0.00 0.00 32.11 0.98
5731 7970 7.907214 AACATCAGCTAGAAACTCGTTTTAT 57.093 32.000 0.00 0.00 32.11 1.40
5732 7971 7.724305 AAACATCAGCTAGAAACTCGTTTTA 57.276 32.000 0.00 0.00 32.11 1.52
5733 7972 6.619801 AAACATCAGCTAGAAACTCGTTTT 57.380 33.333 0.00 0.00 32.11 2.43
5734 7973 6.128526 GCTAAACATCAGCTAGAAACTCGTTT 60.129 38.462 0.00 0.00 36.07 3.60
5735 7974 5.348997 GCTAAACATCAGCTAGAAACTCGTT 59.651 40.000 0.00 0.00 36.07 3.85
5736 7975 4.865365 GCTAAACATCAGCTAGAAACTCGT 59.135 41.667 0.00 0.00 36.07 4.18
5737 7976 4.864806 TGCTAAACATCAGCTAGAAACTCG 59.135 41.667 0.00 0.00 39.83 4.18
5738 7977 6.727824 TTGCTAAACATCAGCTAGAAACTC 57.272 37.500 0.00 0.00 39.83 3.01
5739 7978 7.510549 TTTTGCTAAACATCAGCTAGAAACT 57.489 32.000 0.00 0.00 39.83 2.66
5740 7979 7.862873 AGTTTTTGCTAAACATCAGCTAGAAAC 59.137 33.333 14.53 0.00 39.83 2.78
5741 7980 7.862372 CAGTTTTTGCTAAACATCAGCTAGAAA 59.138 33.333 14.53 0.00 39.83 2.52
5742 7981 7.362662 CAGTTTTTGCTAAACATCAGCTAGAA 58.637 34.615 14.53 0.00 39.83 2.10
5743 7982 6.072508 CCAGTTTTTGCTAAACATCAGCTAGA 60.073 38.462 14.53 0.00 39.83 2.43
5744 7983 6.088824 CCAGTTTTTGCTAAACATCAGCTAG 58.911 40.000 14.53 0.00 39.83 3.42
5745 7984 5.534654 ACCAGTTTTTGCTAAACATCAGCTA 59.465 36.000 14.53 0.00 39.83 3.32
5746 7985 4.342092 ACCAGTTTTTGCTAAACATCAGCT 59.658 37.500 14.53 0.00 39.83 4.24
5747 7986 4.620982 ACCAGTTTTTGCTAAACATCAGC 58.379 39.130 14.53 0.00 39.56 4.26
5748 7987 7.538303 AAAACCAGTTTTTGCTAAACATCAG 57.462 32.000 14.53 5.49 39.52 2.90
5749 7988 8.254508 AGTAAAACCAGTTTTTGCTAAACATCA 58.745 29.630 13.29 0.00 45.29 3.07
5750 7989 8.642908 AGTAAAACCAGTTTTTGCTAAACATC 57.357 30.769 13.29 1.33 45.29 3.06
5758 7997 9.416058 CGAAAATTTAGTAAAACCAGTTTTTGC 57.584 29.630 13.29 7.70 42.22 3.68
5759 7998 9.909043 CCGAAAATTTAGTAAAACCAGTTTTTG 57.091 29.630 13.29 5.75 42.22 2.44
5760 7999 9.656040 ACCGAAAATTTAGTAAAACCAGTTTTT 57.344 25.926 13.29 1.29 42.22 1.94
5761 8000 9.656040 AACCGAAAATTTAGTAAAACCAGTTTT 57.344 25.926 12.72 12.72 44.16 2.43
5774 8013 9.370126 CGAGCTGATTATTAACCGAAAATTTAG 57.630 33.333 0.00 0.00 0.00 1.85
5775 8014 8.885722 ACGAGCTGATTATTAACCGAAAATTTA 58.114 29.630 0.00 0.00 0.00 1.40
5776 8015 7.696453 CACGAGCTGATTATTAACCGAAAATTT 59.304 33.333 0.00 0.00 0.00 1.82
5777 8016 7.065324 TCACGAGCTGATTATTAACCGAAAATT 59.935 33.333 0.00 0.00 0.00 1.82
5778 8017 6.537301 TCACGAGCTGATTATTAACCGAAAAT 59.463 34.615 0.00 0.00 0.00 1.82
5779 8018 5.870433 TCACGAGCTGATTATTAACCGAAAA 59.130 36.000 0.00 0.00 0.00 2.29
5780 8019 5.412640 TCACGAGCTGATTATTAACCGAAA 58.587 37.500 0.00 0.00 0.00 3.46
5781 8020 5.001237 TCACGAGCTGATTATTAACCGAA 57.999 39.130 0.00 0.00 0.00 4.30
5782 8021 4.642445 TCACGAGCTGATTATTAACCGA 57.358 40.909 0.00 0.00 0.00 4.69
5783 8022 5.712217 TTTCACGAGCTGATTATTAACCG 57.288 39.130 0.00 0.00 0.00 4.44
5784 8023 7.527457 AGTTTTTCACGAGCTGATTATTAACC 58.473 34.615 0.00 0.00 0.00 2.85
5785 8024 8.950403 AAGTTTTTCACGAGCTGATTATTAAC 57.050 30.769 0.00 0.00 0.00 2.01
5786 8025 9.393249 CAAAGTTTTTCACGAGCTGATTATTAA 57.607 29.630 0.00 0.00 0.00 1.40
5787 8026 8.564574 ACAAAGTTTTTCACGAGCTGATTATTA 58.435 29.630 0.00 0.00 0.00 0.98
5788 8027 7.425606 ACAAAGTTTTTCACGAGCTGATTATT 58.574 30.769 0.00 0.00 0.00 1.40
5789 8028 6.970484 ACAAAGTTTTTCACGAGCTGATTAT 58.030 32.000 0.00 0.00 0.00 1.28
5790 8029 6.371809 ACAAAGTTTTTCACGAGCTGATTA 57.628 33.333 0.00 0.00 0.00 1.75
5791 8030 5.248870 ACAAAGTTTTTCACGAGCTGATT 57.751 34.783 0.00 0.00 0.00 2.57
5792 8031 4.900635 ACAAAGTTTTTCACGAGCTGAT 57.099 36.364 0.00 0.00 0.00 2.90
5793 8032 4.695217 AACAAAGTTTTTCACGAGCTGA 57.305 36.364 0.00 0.00 0.00 4.26
5794 8033 4.031652 CCAAACAAAGTTTTTCACGAGCTG 59.968 41.667 0.00 0.00 0.00 4.24
5795 8034 4.082463 TCCAAACAAAGTTTTTCACGAGCT 60.082 37.500 0.00 0.00 0.00 4.09
5796 8035 4.031314 GTCCAAACAAAGTTTTTCACGAGC 59.969 41.667 0.00 0.00 0.00 5.03
5797 8036 5.399013 AGTCCAAACAAAGTTTTTCACGAG 58.601 37.500 0.00 0.00 0.00 4.18
5798 8037 5.379732 AGTCCAAACAAAGTTTTTCACGA 57.620 34.783 0.00 0.00 0.00 4.35
5799 8038 6.548171 TCTAGTCCAAACAAAGTTTTTCACG 58.452 36.000 0.00 0.00 0.00 4.35
5800 8039 8.751302 TTTCTAGTCCAAACAAAGTTTTTCAC 57.249 30.769 0.00 0.00 0.00 3.18
5801 8040 9.765795 TTTTTCTAGTCCAAACAAAGTTTTTCA 57.234 25.926 0.00 0.00 0.00 2.69
5803 8042 8.705134 CGTTTTTCTAGTCCAAACAAAGTTTTT 58.295 29.630 11.88 0.00 31.81 1.94
5804 8043 7.148705 GCGTTTTTCTAGTCCAAACAAAGTTTT 60.149 33.333 11.88 0.00 31.81 2.43
5805 8044 6.309494 GCGTTTTTCTAGTCCAAACAAAGTTT 59.691 34.615 11.88 0.00 31.81 2.66
5806 8045 5.803461 GCGTTTTTCTAGTCCAAACAAAGTT 59.197 36.000 11.88 0.00 31.81 2.66
5807 8046 5.106078 TGCGTTTTTCTAGTCCAAACAAAGT 60.106 36.000 11.88 0.00 31.81 2.66
5808 8047 5.336744 TGCGTTTTTCTAGTCCAAACAAAG 58.663 37.500 11.88 1.84 31.81 2.77
5809 8048 5.312120 TGCGTTTTTCTAGTCCAAACAAA 57.688 34.783 11.88 0.00 31.81 2.83
5810 8049 4.966965 TGCGTTTTTCTAGTCCAAACAA 57.033 36.364 11.88 1.50 31.81 2.83
5811 8050 4.966965 TTGCGTTTTTCTAGTCCAAACA 57.033 36.364 11.88 0.00 31.81 2.83
5812 8051 6.206498 AGAATTGCGTTTTTCTAGTCCAAAC 58.794 36.000 0.00 0.00 30.56 2.93
5813 8052 6.385649 AGAATTGCGTTTTTCTAGTCCAAA 57.614 33.333 0.00 0.00 30.56 3.28
5814 8053 7.129109 CTAGAATTGCGTTTTTCTAGTCCAA 57.871 36.000 16.00 0.00 43.14 3.53
5815 8054 6.721571 CTAGAATTGCGTTTTTCTAGTCCA 57.278 37.500 16.00 0.00 43.14 4.02
5820 8059 5.335348 GGCCAACTAGAATTGCGTTTTTCTA 60.335 40.000 0.00 0.00 34.22 2.10
5821 8060 4.546570 GCCAACTAGAATTGCGTTTTTCT 58.453 39.130 0.00 0.00 36.26 2.52
5822 8061 3.673338 GGCCAACTAGAATTGCGTTTTTC 59.327 43.478 0.00 0.00 0.00 2.29
5823 8062 3.554129 GGGCCAACTAGAATTGCGTTTTT 60.554 43.478 4.39 0.00 0.00 1.94
5824 8063 2.029380 GGGCCAACTAGAATTGCGTTTT 60.029 45.455 4.39 0.00 0.00 2.43
5825 8064 1.544246 GGGCCAACTAGAATTGCGTTT 59.456 47.619 4.39 0.00 0.00 3.60
5826 8065 1.173913 GGGCCAACTAGAATTGCGTT 58.826 50.000 4.39 0.00 0.00 4.84
5827 8066 0.037590 TGGGCCAACTAGAATTGCGT 59.962 50.000 2.13 0.00 0.00 5.24
5828 8067 0.734889 CTGGGCCAACTAGAATTGCG 59.265 55.000 8.04 0.00 0.00 4.85
5829 8068 1.474077 CACTGGGCCAACTAGAATTGC 59.526 52.381 8.04 0.00 0.00 3.56
5830 8069 1.474077 GCACTGGGCCAACTAGAATTG 59.526 52.381 8.04 0.00 36.11 2.32
5831 8070 1.839424 GCACTGGGCCAACTAGAATT 58.161 50.000 8.04 0.00 36.11 2.17
5832 8071 3.577389 GCACTGGGCCAACTAGAAT 57.423 52.632 8.04 0.00 36.11 2.40
5842 8081 0.613012 ATCCAAAGAAGGCACTGGGC 60.613 55.000 0.00 0.00 40.86 5.36
5843 8082 2.648059 CTATCCAAAGAAGGCACTGGG 58.352 52.381 0.00 0.00 40.86 4.45
5844 8083 2.019984 GCTATCCAAAGAAGGCACTGG 58.980 52.381 0.00 0.00 40.86 4.00
5845 8084 2.715046 TGCTATCCAAAGAAGGCACTG 58.285 47.619 0.00 0.00 40.86 3.66
5846 8085 3.973425 ATTGCTATCCAAAGAAGGCACT 58.027 40.909 0.00 0.00 37.32 4.40
5847 8086 4.725790 AATTGCTATCCAAAGAAGGCAC 57.274 40.909 0.00 0.00 36.92 5.01
5848 8087 4.339247 GCTAATTGCTATCCAAAGAAGGCA 59.661 41.667 0.00 0.00 36.92 4.75
5849 8088 4.261783 GGCTAATTGCTATCCAAAGAAGGC 60.262 45.833 0.00 0.00 42.39 4.35
5850 8089 4.889409 TGGCTAATTGCTATCCAAAGAAGG 59.111 41.667 0.00 0.00 42.39 3.46
5851 8090 6.645790 ATGGCTAATTGCTATCCAAAGAAG 57.354 37.500 0.00 0.00 38.56 2.85
5852 8091 6.238731 CGAATGGCTAATTGCTATCCAAAGAA 60.239 38.462 0.00 0.00 42.20 2.52
5853 8092 5.239306 CGAATGGCTAATTGCTATCCAAAGA 59.761 40.000 0.00 0.00 42.20 2.52
5854 8093 5.009010 ACGAATGGCTAATTGCTATCCAAAG 59.991 40.000 0.00 0.00 42.20 2.77
5855 8094 4.887071 ACGAATGGCTAATTGCTATCCAAA 59.113 37.500 0.00 0.00 42.20 3.28
5856 8095 4.460263 ACGAATGGCTAATTGCTATCCAA 58.540 39.130 0.00 0.00 42.20 3.53
5857 8096 4.085357 ACGAATGGCTAATTGCTATCCA 57.915 40.909 0.00 0.00 42.20 3.41
5858 8097 6.743575 AATACGAATGGCTAATTGCTATCC 57.256 37.500 0.00 0.00 42.20 2.59
5859 8098 7.244192 GGAAATACGAATGGCTAATTGCTATC 58.756 38.462 0.00 0.00 42.20 2.08
5860 8099 6.128282 CGGAAATACGAATGGCTAATTGCTAT 60.128 38.462 0.00 0.00 45.03 2.97
5861 8100 5.178623 CGGAAATACGAATGGCTAATTGCTA 59.821 40.000 0.00 0.00 37.72 3.49
5862 8101 4.024048 CGGAAATACGAATGGCTAATTGCT 60.024 41.667 0.00 0.00 37.72 3.91
5863 8102 4.219033 CGGAAATACGAATGGCTAATTGC 58.781 43.478 0.00 0.00 37.15 3.56
5864 8103 5.418310 ACGGAAATACGAATGGCTAATTG 57.582 39.130 0.00 0.00 37.61 2.32
5865 8104 4.514066 GGACGGAAATACGAATGGCTAATT 59.486 41.667 0.00 0.00 37.61 1.40
5866 8105 4.062991 GGACGGAAATACGAATGGCTAAT 58.937 43.478 0.00 0.00 37.61 1.73
5867 8106 3.460103 GGACGGAAATACGAATGGCTAA 58.540 45.455 0.00 0.00 37.61 3.09
5868 8107 2.544277 CGGACGGAAATACGAATGGCTA 60.544 50.000 0.00 0.00 37.61 3.93
5869 8108 1.805120 CGGACGGAAATACGAATGGCT 60.805 52.381 0.00 0.00 37.61 4.75
5870 8109 0.580104 CGGACGGAAATACGAATGGC 59.420 55.000 0.00 0.00 37.61 4.40
5871 8110 1.930567 ACGGACGGAAATACGAATGG 58.069 50.000 0.00 0.00 37.61 3.16
5872 8111 5.646467 AATTACGGACGGAAATACGAATG 57.354 39.130 0.00 0.00 37.61 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.