Multiple sequence alignment - TraesCS2A01G223700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G223700 chr2A 100.000 3581 0 0 1 3581 220016847 220013267 0.000000e+00 6613.0
1 TraesCS2A01G223700 chr2A 89.130 92 10 0 2557 2648 541385635 541385726 8.120000e-22 115.0
2 TraesCS2A01G223700 chr2A 91.139 79 7 0 2563 2641 607842534 607842612 1.360000e-19 108.0
3 TraesCS2A01G223700 chr2A 76.705 176 34 7 493 664 207596249 207596421 1.370000e-14 91.6
4 TraesCS2A01G223700 chr2B 94.483 2592 108 15 1 2566 376016445 376013863 0.000000e+00 3962.0
5 TraesCS2A01G223700 chr2B 90.840 131 6 3 2976 3104 376013863 376013737 1.710000e-38 171.0
6 TraesCS2A01G223700 chr2D 93.755 2594 123 20 1 2566 199763985 199761403 0.000000e+00 3856.0
7 TraesCS2A01G223700 chr2D 90.323 155 15 0 3427 3581 199760441 199760287 1.690000e-48 204.0
8 TraesCS2A01G223700 chr2D 89.313 131 11 1 3181 3311 199761157 199761030 1.030000e-35 161.0
9 TraesCS2A01G223700 chr2D 78.067 269 50 7 402 664 327846542 327846807 1.030000e-35 161.0
10 TraesCS2A01G223700 chr2D 83.571 140 20 3 461 598 130436767 130436905 1.040000e-25 128.0
11 TraesCS2A01G223700 chr2D 93.421 76 5 0 2976 3051 199761403 199761328 2.920000e-21 113.0
12 TraesCS2A01G223700 chr2D 90.361 83 7 1 2559 2641 649141972 649142053 1.360000e-19 108.0
13 TraesCS2A01G223700 chr4A 93.333 1500 100 0 1002 2501 681113623 681112124 0.000000e+00 2217.0
14 TraesCS2A01G223700 chr4A 80.645 93 14 3 1852 1942 681176984 681176894 6.420000e-08 69.4
15 TraesCS2A01G223700 chr4D 93.267 1500 101 0 1002 2501 474948123 474949622 0.000000e+00 2211.0
16 TraesCS2A01G223700 chr4D 73.201 1209 257 51 1298 2465 474942369 474943551 3.380000e-100 375.0
17 TraesCS2A01G223700 chr4D 88.889 90 10 0 2559 2648 334628288 334628199 1.050000e-20 111.0
18 TraesCS2A01G223700 chr4D 85.075 67 10 0 1852 1918 474921513 474921579 6.420000e-08 69.4
19 TraesCS2A01G223700 chr4B 92.933 1500 106 0 1002 2501 599236445 599234946 0.000000e+00 2183.0
20 TraesCS2A01G223700 chr4B 88.182 330 31 7 2652 2978 177706374 177706050 1.560000e-103 387.0
21 TraesCS2A01G223700 chr4B 86.880 343 34 7 2647 2984 182202834 182202498 1.210000e-99 374.0
22 TraesCS2A01G223700 chr4B 74.632 272 60 6 402 666 640288682 640288413 1.050000e-20 111.0
23 TraesCS2A01G223700 chr4B 79.570 93 15 3 1852 1942 599350670 599350580 2.980000e-06 63.9
24 TraesCS2A01G223700 chr3B 87.952 332 32 6 2649 2977 249997323 249997649 5.610000e-103 385.0
25 TraesCS2A01G223700 chr1B 87.172 343 33 7 2647 2984 262995462 262995126 2.610000e-101 379.0
26 TraesCS2A01G223700 chr1B 86.919 344 35 9 2646 2985 411565152 411565489 9.380000e-101 377.0
27 TraesCS2A01G223700 chr1B 72.788 893 190 45 1466 2334 279573024 279572161 1.650000e-63 254.0
28 TraesCS2A01G223700 chr1B 89.655 87 9 0 2563 2649 296490703 296490617 1.050000e-20 111.0
29 TraesCS2A01G223700 chr1B 89.535 86 9 0 2563 2648 26884115 26884030 3.780000e-20 110.0
30 TraesCS2A01G223700 chr7B 86.705 346 34 8 2647 2986 426656414 426656075 1.210000e-99 374.0
31 TraesCS2A01G223700 chr7B 79.195 149 27 1 402 546 64747667 64747519 2.270000e-17 100.0
32 TraesCS2A01G223700 chr7B 79.845 129 23 3 496 623 247258359 247258233 1.370000e-14 91.6
33 TraesCS2A01G223700 chr7B 92.982 57 4 0 3102 3158 577307803 577307747 2.290000e-12 84.2
34 TraesCS2A01G223700 chr6B 86.705 346 33 9 2647 2986 173231103 173230765 4.370000e-99 372.0
35 TraesCS2A01G223700 chr6B 86.667 345 35 7 2647 2986 405764329 405763991 4.370000e-99 372.0
36 TraesCS2A01G223700 chr5B 86.087 345 37 7 2647 2986 654987131 654986793 9.450000e-96 361.0
37 TraesCS2A01G223700 chr5B 77.174 184 36 6 489 669 21524097 21524277 6.330000e-18 102.0
38 TraesCS2A01G223700 chr1D 72.538 914 202 40 1468 2360 199335472 199334587 5.930000e-63 252.0
39 TraesCS2A01G223700 chr7A 76.842 285 53 8 385 660 681972574 681972854 8.010000e-32 148.0
40 TraesCS2A01G223700 chr1A 89.888 89 9 0 2561 2649 473034020 473033932 8.120000e-22 115.0
41 TraesCS2A01G223700 chr5D 78.495 186 31 9 489 669 28946954 28947135 2.920000e-21 113.0
42 TraesCS2A01G223700 chr5D 85.185 108 13 3 2544 2651 331119045 331118941 1.360000e-19 108.0
43 TraesCS2A01G223700 chr6A 89.655 87 9 0 2563 2649 611109894 611109808 1.050000e-20 111.0
44 TraesCS2A01G223700 chr3A 92.647 68 4 1 1137 1204 611206169 611206235 2.940000e-16 97.1
45 TraesCS2A01G223700 chr3D 75.000 232 42 14 1503 1726 8927676 8927899 3.810000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G223700 chr2A 220013267 220016847 3580 True 6613.0 6613 100.0000 1 3581 1 chr2A.!!$R1 3580
1 TraesCS2A01G223700 chr2B 376013737 376016445 2708 True 2066.5 3962 92.6615 1 3104 2 chr2B.!!$R1 3103
2 TraesCS2A01G223700 chr2D 199760287 199763985 3698 True 1083.5 3856 91.7030 1 3581 4 chr2D.!!$R1 3580
3 TraesCS2A01G223700 chr4A 681112124 681113623 1499 True 2217.0 2217 93.3330 1002 2501 1 chr4A.!!$R1 1499
4 TraesCS2A01G223700 chr4D 474948123 474949622 1499 False 2211.0 2211 93.2670 1002 2501 1 chr4D.!!$F3 1499
5 TraesCS2A01G223700 chr4D 474942369 474943551 1182 False 375.0 375 73.2010 1298 2465 1 chr4D.!!$F2 1167
6 TraesCS2A01G223700 chr4B 599234946 599236445 1499 True 2183.0 2183 92.9330 1002 2501 1 chr4B.!!$R3 1499
7 TraesCS2A01G223700 chr1B 279572161 279573024 863 True 254.0 254 72.7880 1466 2334 1 chr1B.!!$R3 868
8 TraesCS2A01G223700 chr1D 199334587 199335472 885 True 252.0 252 72.5380 1468 2360 1 chr1D.!!$R1 892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 827 0.032952 TCCGCGCGCCTAGATTTATT 59.967 50.0 27.36 0.0 0.0 1.40 F
1021 1047 0.608640 GACCATGGAGAGGACAACGT 59.391 55.0 21.47 0.0 0.0 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2436 2486 1.299976 GGCCTCCACCGTGAAATCT 59.700 57.895 0.0 0.0 0.0 2.40 R
3016 3066 0.253610 ACGGTCCCAACAAGTCAACA 59.746 50.000 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.121030 CTGGTGGTGCAGCGCTAC 61.121 66.667 26.79 13.82 34.27 3.58
88 89 1.480212 TTCCACTGGAGTCACGCCAT 61.480 55.000 0.00 0.00 31.99 4.40
102 103 2.741985 CCATCGCCGCACACAAGA 60.742 61.111 0.00 0.00 0.00 3.02
104 105 1.061411 CATCGCCGCACACAAGATG 59.939 57.895 0.00 0.00 33.76 2.90
105 106 1.079197 ATCGCCGCACACAAGATGA 60.079 52.632 0.00 0.00 0.00 2.92
117 128 0.524862 CAAGATGAGTGGCTGGCAAC 59.475 55.000 5.14 4.09 0.00 4.17
137 148 0.174617 GAGGAAGAGTGGAAGGCGAG 59.825 60.000 0.00 0.00 0.00 5.03
161 172 1.980765 TGAAGTGGAGATGAGTGGCTT 59.019 47.619 0.00 0.00 0.00 4.35
162 173 2.289882 TGAAGTGGAGATGAGTGGCTTG 60.290 50.000 0.00 0.00 0.00 4.01
163 174 1.649321 AGTGGAGATGAGTGGCTTGA 58.351 50.000 0.00 0.00 0.00 3.02
172 183 1.355381 TGAGTGGCTTGATTGGGTGAT 59.645 47.619 0.00 0.00 0.00 3.06
219 230 0.179169 GAGGTCGTTCGTGCTAGGAC 60.179 60.000 3.94 3.94 0.00 3.85
229 240 1.202268 CGTGCTAGGACTCTAAACCCG 60.202 57.143 12.91 0.00 0.00 5.28
244 255 0.036765 ACCCGCGAACTATTGCTTCA 60.037 50.000 8.23 0.00 33.43 3.02
245 256 1.083489 CCCGCGAACTATTGCTTCAA 58.917 50.000 8.23 0.00 33.43 2.69
251 262 4.151798 GCGAACTATTGCTTCAAGTTGAC 58.848 43.478 4.68 0.00 33.72 3.18
282 295 5.100259 CACTCGACTTTAAGATTCGGCTTA 58.900 41.667 0.00 0.00 33.50 3.09
291 304 1.341531 AGATTCGGCTTAGTCATCCGG 59.658 52.381 0.00 0.00 43.10 5.14
320 333 3.428746 TCGTGGTTTGTTGTGAAATGG 57.571 42.857 0.00 0.00 0.00 3.16
335 348 7.770801 TGTGAAATGGTTAATATCTCACGAG 57.229 36.000 0.00 0.00 35.56 4.18
400 413 7.956420 ATTAAAGTCGTTCACATACACTTGA 57.044 32.000 0.00 0.00 0.00 3.02
411 424 6.754193 TCACATACACTTGAATACACTCACA 58.246 36.000 0.00 0.00 0.00 3.58
412 425 6.645003 TCACATACACTTGAATACACTCACAC 59.355 38.462 0.00 0.00 0.00 3.82
441 454 3.864686 CGCATGCACGCCCTACAC 61.865 66.667 19.57 0.00 0.00 2.90
443 456 2.114670 GCATGCACGCCCTACACAT 61.115 57.895 14.21 0.00 0.00 3.21
446 459 2.870035 GCATGCACGCCCTACACATATA 60.870 50.000 14.21 0.00 0.00 0.86
469 486 0.894184 ACCTTCGAGAGAGCCGACAA 60.894 55.000 0.00 0.00 43.69 3.18
540 557 0.321671 ACGTCTCCCCACACTGAATG 59.678 55.000 0.00 0.00 0.00 2.67
547 564 1.536940 CCCACACTGAATGCACATCA 58.463 50.000 4.16 4.16 0.00 3.07
554 571 1.811965 CTGAATGCACATCACCGGAAA 59.188 47.619 9.46 0.00 0.00 3.13
571 588 9.456147 TCACCGGAAAATCTAAAATAAATCTCA 57.544 29.630 9.46 0.00 0.00 3.27
637 654 3.317711 CGAGCTGAGATATCAGTGTCCTT 59.682 47.826 18.17 0.00 39.76 3.36
638 655 4.556501 CGAGCTGAGATATCAGTGTCCTTC 60.557 50.000 18.17 6.62 39.76 3.46
640 657 5.700183 AGCTGAGATATCAGTGTCCTTCTA 58.300 41.667 18.17 0.00 39.76 2.10
643 660 6.040391 GCTGAGATATCAGTGTCCTTCTAACT 59.960 42.308 18.17 0.00 39.76 2.24
683 700 4.990543 TCGCTATTTGCCTATTTCGATG 57.009 40.909 0.00 0.00 38.78 3.84
684 701 4.377021 TCGCTATTTGCCTATTTCGATGT 58.623 39.130 0.00 0.00 38.78 3.06
685 702 5.534407 TCGCTATTTGCCTATTTCGATGTA 58.466 37.500 0.00 0.00 38.78 2.29
686 703 5.404366 TCGCTATTTGCCTATTTCGATGTAC 59.596 40.000 0.00 0.00 38.78 2.90
712 729 5.983333 AGAGGAGAGAAGAGAAGAGAGAT 57.017 43.478 0.00 0.00 0.00 2.75
778 798 3.222354 GACTGCACGTTCCCTCGGT 62.222 63.158 0.00 0.00 34.94 4.69
807 827 0.032952 TCCGCGCGCCTAGATTTATT 59.967 50.000 27.36 0.00 0.00 1.40
812 832 2.094417 GCGCGCCTAGATTTATTGATCC 59.906 50.000 23.24 0.00 0.00 3.36
896 916 2.355756 CTCTCTAGTCTGAGCTGTGAGC 59.644 54.545 0.00 0.00 42.84 4.26
1021 1047 0.608640 GACCATGGAGAGGACAACGT 59.391 55.000 21.47 0.00 0.00 3.99
1251 1277 4.519437 CTGATCGCCTCCGCTGCA 62.519 66.667 0.00 0.00 0.00 4.41
1482 1523 4.814294 GAGGGCTGGTACGCCACG 62.814 72.222 13.03 0.00 46.61 4.94
1500 1541 2.722201 GGACCACTTCGGCCTCGAT 61.722 63.158 0.00 0.00 45.51 3.59
1671 1712 2.954611 CTCGTCGACTGGCTGACA 59.045 61.111 14.70 0.00 34.78 3.58
2397 2447 4.063967 CCGAGGCTGGTGTACGCA 62.064 66.667 8.97 0.00 0.00 5.24
2563 2613 8.103305 AGGTTTCTAGCAAAATCAAGACAGATA 58.897 33.333 0.00 0.00 0.00 1.98
2564 2614 8.178313 GGTTTCTAGCAAAATCAAGACAGATAC 58.822 37.037 0.00 0.00 0.00 2.24
2565 2615 8.940952 GTTTCTAGCAAAATCAAGACAGATACT 58.059 33.333 0.00 0.00 0.00 2.12
2566 2616 9.507329 TTTCTAGCAAAATCAAGACAGATACTT 57.493 29.630 0.00 0.00 0.00 2.24
2567 2617 8.709386 TCTAGCAAAATCAAGACAGATACTTC 57.291 34.615 0.00 0.00 0.00 3.01
2568 2618 6.749923 AGCAAAATCAAGACAGATACTTCC 57.250 37.500 0.00 0.00 0.00 3.46
2569 2619 6.479884 AGCAAAATCAAGACAGATACTTCCT 58.520 36.000 0.00 0.00 0.00 3.36
2570 2620 6.597280 AGCAAAATCAAGACAGATACTTCCTC 59.403 38.462 0.00 0.00 0.00 3.71
2571 2621 6.183360 GCAAAATCAAGACAGATACTTCCTCC 60.183 42.308 0.00 0.00 0.00 4.30
2572 2622 4.927978 ATCAAGACAGATACTTCCTCCG 57.072 45.455 0.00 0.00 0.00 4.63
2573 2623 3.698289 TCAAGACAGATACTTCCTCCGT 58.302 45.455 0.00 0.00 0.00 4.69
2574 2624 4.851843 TCAAGACAGATACTTCCTCCGTA 58.148 43.478 0.00 0.00 0.00 4.02
2575 2625 5.258841 TCAAGACAGATACTTCCTCCGTAA 58.741 41.667 0.00 0.00 0.00 3.18
2576 2626 5.713389 TCAAGACAGATACTTCCTCCGTAAA 59.287 40.000 0.00 0.00 0.00 2.01
2577 2627 5.579564 AGACAGATACTTCCTCCGTAAAC 57.420 43.478 0.00 0.00 0.00 2.01
2578 2628 5.262804 AGACAGATACTTCCTCCGTAAACT 58.737 41.667 0.00 0.00 0.00 2.66
2579 2629 6.421485 AGACAGATACTTCCTCCGTAAACTA 58.579 40.000 0.00 0.00 0.00 2.24
2580 2630 6.888632 AGACAGATACTTCCTCCGTAAACTAA 59.111 38.462 0.00 0.00 0.00 2.24
2581 2631 7.560626 AGACAGATACTTCCTCCGTAAACTAAT 59.439 37.037 0.00 0.00 0.00 1.73
2582 2632 7.490000 ACAGATACTTCCTCCGTAAACTAATG 58.510 38.462 0.00 0.00 0.00 1.90
2583 2633 7.123847 ACAGATACTTCCTCCGTAAACTAATGT 59.876 37.037 0.00 0.00 0.00 2.71
2584 2634 8.627403 CAGATACTTCCTCCGTAAACTAATGTA 58.373 37.037 0.00 0.00 0.00 2.29
2585 2635 9.193806 AGATACTTCCTCCGTAAACTAATGTAA 57.806 33.333 0.00 0.00 0.00 2.41
2586 2636 9.460906 GATACTTCCTCCGTAAACTAATGTAAG 57.539 37.037 0.00 0.00 0.00 2.34
2587 2637 7.472334 ACTTCCTCCGTAAACTAATGTAAGA 57.528 36.000 0.00 0.00 0.00 2.10
2588 2638 7.545489 ACTTCCTCCGTAAACTAATGTAAGAG 58.455 38.462 0.00 0.00 0.00 2.85
2589 2639 5.899299 TCCTCCGTAAACTAATGTAAGAGC 58.101 41.667 0.00 0.00 0.00 4.09
2590 2640 4.738740 CCTCCGTAAACTAATGTAAGAGCG 59.261 45.833 0.00 0.00 0.00 5.03
2591 2641 5.314923 TCCGTAAACTAATGTAAGAGCGT 57.685 39.130 0.00 0.00 0.00 5.07
2592 2642 5.713025 TCCGTAAACTAATGTAAGAGCGTT 58.287 37.500 0.00 0.00 0.00 4.84
2593 2643 6.158598 TCCGTAAACTAATGTAAGAGCGTTT 58.841 36.000 0.00 0.00 0.00 3.60
2594 2644 7.312154 TCCGTAAACTAATGTAAGAGCGTTTA 58.688 34.615 0.00 0.00 0.00 2.01
2595 2645 7.485913 TCCGTAAACTAATGTAAGAGCGTTTAG 59.514 37.037 0.00 0.00 30.36 1.85
2596 2646 7.485913 CCGTAAACTAATGTAAGAGCGTTTAGA 59.514 37.037 0.00 0.00 30.36 2.10
2597 2647 9.017669 CGTAAACTAATGTAAGAGCGTTTAGAT 57.982 33.333 0.00 0.00 30.36 1.98
2599 2649 8.997621 AAACTAATGTAAGAGCGTTTAGATCA 57.002 30.769 0.00 0.00 37.82 2.92
2600 2650 7.988904 ACTAATGTAAGAGCGTTTAGATCAC 57.011 36.000 0.00 0.00 37.82 3.06
2601 2651 7.773149 ACTAATGTAAGAGCGTTTAGATCACT 58.227 34.615 0.00 0.00 37.82 3.41
2602 2652 8.900781 ACTAATGTAAGAGCGTTTAGATCACTA 58.099 33.333 0.00 0.00 37.82 2.74
2603 2653 7.988904 AATGTAAGAGCGTTTAGATCACTAC 57.011 36.000 0.00 0.00 37.82 2.73
2604 2654 6.754702 TGTAAGAGCGTTTAGATCACTACT 57.245 37.500 0.00 0.00 37.82 2.57
2605 2655 7.154435 TGTAAGAGCGTTTAGATCACTACTT 57.846 36.000 0.00 0.00 37.82 2.24
2606 2656 7.600065 TGTAAGAGCGTTTAGATCACTACTTT 58.400 34.615 0.00 0.00 37.82 2.66
2607 2657 8.733458 TGTAAGAGCGTTTAGATCACTACTTTA 58.267 33.333 0.00 0.00 37.82 1.85
2608 2658 9.224058 GTAAGAGCGTTTAGATCACTACTTTAG 57.776 37.037 0.00 0.00 37.82 1.85
2609 2659 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2661 2711 7.426606 AGAGAAAGTACTAATCCCTCCTTTC 57.573 40.000 0.00 0.00 38.55 2.62
2662 2712 7.193338 AGAGAAAGTACTAATCCCTCCTTTCT 58.807 38.462 11.11 11.11 46.37 2.52
2663 2713 7.680739 AGAGAAAGTACTAATCCCTCCTTTCTT 59.319 37.037 12.21 2.90 44.74 2.52
2664 2714 7.625469 AGAAAGTACTAATCCCTCCTTTCTTG 58.375 38.462 0.00 0.00 43.18 3.02
2665 2715 6.954352 AAGTACTAATCCCTCCTTTCTTGT 57.046 37.500 0.00 0.00 0.00 3.16
2666 2716 6.954352 AGTACTAATCCCTCCTTTCTTGTT 57.046 37.500 0.00 0.00 0.00 2.83
2667 2717 7.331089 AGTACTAATCCCTCCTTTCTTGTTT 57.669 36.000 0.00 0.00 0.00 2.83
2668 2718 8.445361 AGTACTAATCCCTCCTTTCTTGTTTA 57.555 34.615 0.00 0.00 0.00 2.01
2669 2719 9.059023 AGTACTAATCCCTCCTTTCTTGTTTAT 57.941 33.333 0.00 0.00 0.00 1.40
2672 2722 9.853177 ACTAATCCCTCCTTTCTTGTTTATATG 57.147 33.333 0.00 0.00 0.00 1.78
2675 2725 9.942526 AATCCCTCCTTTCTTGTTTATATGATT 57.057 29.630 0.00 0.00 0.00 2.57
2676 2726 9.942526 ATCCCTCCTTTCTTGTTTATATGATTT 57.057 29.630 0.00 0.00 0.00 2.17
2703 2753 9.918630 AATTCAAAAATCTCACAATCAAGGTAG 57.081 29.630 0.00 0.00 0.00 3.18
2704 2754 8.690203 TTCAAAAATCTCACAATCAAGGTAGA 57.310 30.769 0.00 0.00 0.00 2.59
2705 2755 8.868522 TCAAAAATCTCACAATCAAGGTAGAT 57.131 30.769 0.00 0.00 0.00 1.98
2706 2756 8.733458 TCAAAAATCTCACAATCAAGGTAGATG 58.267 33.333 0.00 0.00 0.00 2.90
2707 2757 7.636150 AAAATCTCACAATCAAGGTAGATGG 57.364 36.000 0.00 0.00 0.00 3.51
2708 2758 5.965033 ATCTCACAATCAAGGTAGATGGT 57.035 39.130 0.00 0.00 32.35 3.55
2709 2759 5.089970 TCTCACAATCAAGGTAGATGGTG 57.910 43.478 5.33 5.33 46.68 4.17
2713 2763 4.836825 ACAATCAAGGTAGATGGTGAGTG 58.163 43.478 0.00 0.00 40.80 3.51
2714 2764 4.532126 ACAATCAAGGTAGATGGTGAGTGA 59.468 41.667 6.92 0.00 38.10 3.41
2715 2765 5.190528 ACAATCAAGGTAGATGGTGAGTGAT 59.809 40.000 6.92 0.00 38.10 3.06
2716 2766 4.743057 TCAAGGTAGATGGTGAGTGATG 57.257 45.455 0.00 0.00 0.00 3.07
2717 2767 4.352893 TCAAGGTAGATGGTGAGTGATGA 58.647 43.478 0.00 0.00 0.00 2.92
2718 2768 4.777366 TCAAGGTAGATGGTGAGTGATGAA 59.223 41.667 0.00 0.00 0.00 2.57
2719 2769 5.248248 TCAAGGTAGATGGTGAGTGATGAAA 59.752 40.000 0.00 0.00 0.00 2.69
2720 2770 5.965033 AGGTAGATGGTGAGTGATGAAAT 57.035 39.130 0.00 0.00 0.00 2.17
2721 2771 7.125659 TCAAGGTAGATGGTGAGTGATGAAATA 59.874 37.037 0.00 0.00 0.00 1.40
2722 2772 7.060383 AGGTAGATGGTGAGTGATGAAATAG 57.940 40.000 0.00 0.00 0.00 1.73
2723 2773 6.613271 AGGTAGATGGTGAGTGATGAAATAGT 59.387 38.462 0.00 0.00 0.00 2.12
2724 2774 7.126421 AGGTAGATGGTGAGTGATGAAATAGTT 59.874 37.037 0.00 0.00 0.00 2.24
2725 2775 7.770897 GGTAGATGGTGAGTGATGAAATAGTTT 59.229 37.037 0.00 0.00 0.00 2.66
2726 2776 9.817809 GTAGATGGTGAGTGATGAAATAGTTTA 57.182 33.333 0.00 0.00 0.00 2.01
2830 2880 4.228912 GCATAAGGTACATGCATTGGTC 57.771 45.455 10.82 0.00 46.47 4.02
2831 2881 3.631686 GCATAAGGTACATGCATTGGTCA 59.368 43.478 10.82 0.00 46.47 4.02
2832 2882 4.097741 GCATAAGGTACATGCATTGGTCAA 59.902 41.667 10.82 0.00 46.47 3.18
2833 2883 5.221303 GCATAAGGTACATGCATTGGTCAAT 60.221 40.000 10.82 0.00 46.47 2.57
2834 2884 6.683610 GCATAAGGTACATGCATTGGTCAATT 60.684 38.462 10.82 0.00 46.47 2.32
2835 2885 5.743636 AAGGTACATGCATTGGTCAATTT 57.256 34.783 0.00 0.00 0.00 1.82
2836 2886 5.743636 AGGTACATGCATTGGTCAATTTT 57.256 34.783 0.00 0.00 0.00 1.82
2837 2887 5.723295 AGGTACATGCATTGGTCAATTTTC 58.277 37.500 0.00 0.00 0.00 2.29
2838 2888 5.481473 AGGTACATGCATTGGTCAATTTTCT 59.519 36.000 0.00 0.00 0.00 2.52
2839 2889 5.807011 GGTACATGCATTGGTCAATTTTCTC 59.193 40.000 0.00 0.00 0.00 2.87
2840 2890 5.733620 ACATGCATTGGTCAATTTTCTCT 57.266 34.783 0.00 0.00 0.00 3.10
2841 2891 6.105397 ACATGCATTGGTCAATTTTCTCTT 57.895 33.333 0.00 0.00 0.00 2.85
2842 2892 7.230849 ACATGCATTGGTCAATTTTCTCTTA 57.769 32.000 0.00 0.00 0.00 2.10
2843 2893 7.669427 ACATGCATTGGTCAATTTTCTCTTAA 58.331 30.769 0.00 0.00 0.00 1.85
2844 2894 8.316214 ACATGCATTGGTCAATTTTCTCTTAAT 58.684 29.630 0.00 0.00 0.00 1.40
2845 2895 9.806203 CATGCATTGGTCAATTTTCTCTTAATA 57.194 29.630 0.00 0.00 0.00 0.98
2855 2905 9.872721 TCAATTTTCTCTTAATATTTGCATGCA 57.127 25.926 18.46 18.46 0.00 3.96
2876 2926 7.668525 TGCAATGATTTAATGCACATTGAAA 57.331 28.000 22.56 11.26 46.81 2.69
2877 2927 7.519843 TGCAATGATTTAATGCACATTGAAAC 58.480 30.769 22.56 10.36 46.81 2.78
2878 2928 6.962678 GCAATGATTTAATGCACATTGAAACC 59.037 34.615 22.56 7.13 46.81 3.27
2879 2929 7.148373 GCAATGATTTAATGCACATTGAAACCT 60.148 33.333 22.56 0.00 46.81 3.50
2880 2930 7.837202 ATGATTTAATGCACATTGAAACCTG 57.163 32.000 6.13 0.00 31.49 4.00
2881 2931 6.990798 TGATTTAATGCACATTGAAACCTGA 58.009 32.000 6.13 0.00 31.49 3.86
2882 2932 7.440198 TGATTTAATGCACATTGAAACCTGAA 58.560 30.769 6.13 0.00 31.49 3.02
2883 2933 7.384660 TGATTTAATGCACATTGAAACCTGAAC 59.615 33.333 6.13 0.00 31.49 3.18
2884 2934 4.669206 AATGCACATTGAAACCTGAACA 57.331 36.364 0.00 0.00 0.00 3.18
2885 2935 4.877378 ATGCACATTGAAACCTGAACAT 57.123 36.364 0.00 0.00 0.00 2.71
2886 2936 3.979948 TGCACATTGAAACCTGAACATG 58.020 40.909 0.00 0.00 0.00 3.21
2887 2937 3.384146 TGCACATTGAAACCTGAACATGT 59.616 39.130 0.00 0.00 0.00 3.21
2888 2938 3.737266 GCACATTGAAACCTGAACATGTG 59.263 43.478 0.00 5.85 40.53 3.21
2889 2939 4.499526 GCACATTGAAACCTGAACATGTGA 60.500 41.667 13.02 0.00 40.14 3.58
2890 2940 5.775686 CACATTGAAACCTGAACATGTGAT 58.224 37.500 0.00 0.00 40.14 3.06
2891 2941 5.631929 CACATTGAAACCTGAACATGTGATG 59.368 40.000 0.00 0.00 40.14 3.07
2893 2943 4.834357 TGAAACCTGAACATGTGATGTG 57.166 40.909 0.00 0.00 44.07 3.21
2894 2944 4.459330 TGAAACCTGAACATGTGATGTGA 58.541 39.130 0.00 0.00 44.07 3.58
2895 2945 5.072055 TGAAACCTGAACATGTGATGTGAT 58.928 37.500 0.00 0.00 44.07 3.06
2896 2946 5.048573 TGAAACCTGAACATGTGATGTGATG 60.049 40.000 0.00 0.00 44.07 3.07
2897 2947 4.290711 ACCTGAACATGTGATGTGATGA 57.709 40.909 0.00 0.00 44.07 2.92
2898 2948 4.259356 ACCTGAACATGTGATGTGATGAG 58.741 43.478 0.00 0.00 44.07 2.90
2899 2949 4.019950 ACCTGAACATGTGATGTGATGAGA 60.020 41.667 0.00 0.00 44.07 3.27
2900 2950 4.939439 CCTGAACATGTGATGTGATGAGAA 59.061 41.667 0.00 0.00 44.07 2.87
2901 2951 5.413523 CCTGAACATGTGATGTGATGAGAAA 59.586 40.000 0.00 0.00 44.07 2.52
2902 2952 6.245115 TGAACATGTGATGTGATGAGAAAC 57.755 37.500 0.00 0.00 44.07 2.78
2903 2953 5.764192 TGAACATGTGATGTGATGAGAAACA 59.236 36.000 0.00 0.00 44.07 2.83
2904 2954 6.262720 TGAACATGTGATGTGATGAGAAACAA 59.737 34.615 0.00 0.00 44.07 2.83
2905 2955 6.005583 ACATGTGATGTGATGAGAAACAAC 57.994 37.500 0.00 0.00 43.01 3.32
2906 2956 5.048504 ACATGTGATGTGATGAGAAACAACC 60.049 40.000 0.00 0.00 43.01 3.77
2907 2957 4.459330 TGTGATGTGATGAGAAACAACCA 58.541 39.130 0.00 0.00 0.00 3.67
2908 2958 4.886489 TGTGATGTGATGAGAAACAACCAA 59.114 37.500 0.00 0.00 0.00 3.67
2909 2959 5.359292 TGTGATGTGATGAGAAACAACCAAA 59.641 36.000 0.00 0.00 0.00 3.28
2910 2960 6.040729 TGTGATGTGATGAGAAACAACCAAAT 59.959 34.615 0.00 0.00 0.00 2.32
2911 2961 6.925165 GTGATGTGATGAGAAACAACCAAATT 59.075 34.615 0.00 0.00 0.00 1.82
2912 2962 6.924612 TGATGTGATGAGAAACAACCAAATTG 59.075 34.615 0.00 0.00 44.60 2.32
2913 2963 6.462552 TGTGATGAGAAACAACCAAATTGA 57.537 33.333 0.00 0.00 41.23 2.57
2914 2964 6.506147 TGTGATGAGAAACAACCAAATTGAG 58.494 36.000 0.00 0.00 41.23 3.02
2915 2965 6.320926 TGTGATGAGAAACAACCAAATTGAGA 59.679 34.615 0.00 0.00 41.23 3.27
2916 2966 7.014518 TGTGATGAGAAACAACCAAATTGAGAT 59.985 33.333 0.00 0.00 41.23 2.75
2917 2967 7.869429 GTGATGAGAAACAACCAAATTGAGATT 59.131 33.333 0.00 0.00 41.23 2.40
2918 2968 8.423349 TGATGAGAAACAACCAAATTGAGATTT 58.577 29.630 0.00 0.00 41.23 2.17
2919 2969 9.912634 GATGAGAAACAACCAAATTGAGATTTA 57.087 29.630 0.00 0.00 41.23 1.40
2927 2977 9.927668 ACAACCAAATTGAGATTTATAAAGTGG 57.072 29.630 3.94 4.01 41.23 4.00
2969 3019 9.457436 AAGATAAGCCTTATAAACCGAAAAAGA 57.543 29.630 0.00 0.00 0.00 2.52
2970 3020 9.110502 AGATAAGCCTTATAAACCGAAAAAGAG 57.889 33.333 0.00 0.00 0.00 2.85
2971 3021 9.106070 GATAAGCCTTATAAACCGAAAAAGAGA 57.894 33.333 0.00 0.00 0.00 3.10
2972 3022 6.986904 AGCCTTATAAACCGAAAAAGAGAG 57.013 37.500 0.00 0.00 0.00 3.20
2973 3023 6.708285 AGCCTTATAAACCGAAAAAGAGAGA 58.292 36.000 0.00 0.00 0.00 3.10
2974 3024 6.819146 AGCCTTATAAACCGAAAAAGAGAGAG 59.181 38.462 0.00 0.00 0.00 3.20
2983 3033 7.242322 ACCGAAAAAGAGAGAGTAATTAGGT 57.758 36.000 0.00 0.00 0.00 3.08
3029 3079 2.063266 GCATGCATGTTGACTTGTTGG 58.937 47.619 26.79 0.00 0.00 3.77
3033 3083 1.000274 GCATGTTGACTTGTTGGGACC 60.000 52.381 0.00 0.00 0.00 4.46
3073 3253 6.045072 TCGAGAGGGAGCAAAGTTAATTAA 57.955 37.500 0.00 0.00 0.00 1.40
3074 3254 5.873164 TCGAGAGGGAGCAAAGTTAATTAAC 59.127 40.000 18.77 18.77 36.46 2.01
3089 3271 9.457436 AAGTTAATTAACAGGTTTACATCGGAT 57.543 29.630 26.06 1.29 38.62 4.18
3090 3272 8.889717 AGTTAATTAACAGGTTTACATCGGATG 58.110 33.333 26.06 16.20 38.62 3.51
3091 3273 5.751243 ATTAACAGGTTTACATCGGATGC 57.249 39.130 17.61 1.57 0.00 3.91
3092 3274 1.651987 ACAGGTTTACATCGGATGCG 58.348 50.000 17.61 0.00 0.00 4.73
3093 3275 1.206132 ACAGGTTTACATCGGATGCGA 59.794 47.619 12.98 12.98 0.00 5.10
3094 3276 2.276201 CAGGTTTACATCGGATGCGAA 58.724 47.619 14.89 9.51 0.00 4.70
3095 3277 2.030457 CAGGTTTACATCGGATGCGAAC 59.970 50.000 14.89 19.21 0.00 3.95
3096 3278 2.004017 GGTTTACATCGGATGCGAACA 58.996 47.619 25.36 0.00 32.97 3.18
3097 3279 2.612212 GGTTTACATCGGATGCGAACAT 59.388 45.455 25.36 4.60 39.98 2.71
3098 3280 3.064820 GGTTTACATCGGATGCGAACATT 59.935 43.478 25.36 0.52 36.35 2.71
3099 3281 4.271687 GTTTACATCGGATGCGAACATTC 58.728 43.478 14.89 0.00 36.35 2.67
3100 3282 2.022764 ACATCGGATGCGAACATTCA 57.977 45.000 14.89 0.00 36.35 2.57
3101 3283 2.355197 ACATCGGATGCGAACATTCAA 58.645 42.857 14.89 0.00 36.35 2.69
3102 3284 2.352651 ACATCGGATGCGAACATTCAAG 59.647 45.455 14.89 0.00 36.35 3.02
3103 3285 0.726827 TCGGATGCGAACATTCAAGC 59.273 50.000 6.93 0.00 36.35 4.01
3104 3286 0.729116 CGGATGCGAACATTCAAGCT 59.271 50.000 0.00 0.00 36.35 3.74
3105 3287 1.131126 CGGATGCGAACATTCAAGCTT 59.869 47.619 0.00 0.00 36.35 3.74
3106 3288 2.414559 CGGATGCGAACATTCAAGCTTT 60.415 45.455 0.00 0.00 36.35 3.51
3107 3289 2.919229 GGATGCGAACATTCAAGCTTTG 59.081 45.455 0.00 0.00 36.35 2.77
3108 3290 1.769733 TGCGAACATTCAAGCTTTGC 58.230 45.000 0.00 0.00 0.00 3.68
3109 3291 1.337703 TGCGAACATTCAAGCTTTGCT 59.662 42.857 0.00 0.00 42.56 3.91
3110 3292 2.551887 TGCGAACATTCAAGCTTTGCTA 59.448 40.909 0.00 0.00 38.25 3.49
3111 3293 2.911102 GCGAACATTCAAGCTTTGCTAC 59.089 45.455 0.00 0.00 38.25 3.58
3112 3294 3.609175 GCGAACATTCAAGCTTTGCTACA 60.609 43.478 0.00 0.00 38.25 2.74
3113 3295 4.726416 CGAACATTCAAGCTTTGCTACAT 58.274 39.130 0.00 0.00 38.25 2.29
3114 3296 4.790140 CGAACATTCAAGCTTTGCTACATC 59.210 41.667 0.00 0.00 38.25 3.06
3115 3297 4.708726 ACATTCAAGCTTTGCTACATCC 57.291 40.909 0.00 0.00 38.25 3.51
3116 3298 4.081406 ACATTCAAGCTTTGCTACATCCA 58.919 39.130 0.00 0.00 38.25 3.41
3117 3299 4.708421 ACATTCAAGCTTTGCTACATCCAT 59.292 37.500 0.00 0.00 38.25 3.41
3118 3300 4.707030 TTCAAGCTTTGCTACATCCATG 57.293 40.909 0.00 0.00 38.25 3.66
3119 3301 3.689347 TCAAGCTTTGCTACATCCATGT 58.311 40.909 0.00 0.00 44.48 3.21
3120 3302 4.842574 TCAAGCTTTGCTACATCCATGTA 58.157 39.130 0.00 0.00 41.97 2.29
3121 3303 5.252547 TCAAGCTTTGCTACATCCATGTAA 58.747 37.500 0.00 0.00 42.20 2.41
3122 3304 5.709631 TCAAGCTTTGCTACATCCATGTAAA 59.290 36.000 0.00 0.00 42.20 2.01
3123 3305 5.824904 AGCTTTGCTACATCCATGTAAAG 57.175 39.130 8.28 8.28 42.20 1.85
3124 3306 5.500234 AGCTTTGCTACATCCATGTAAAGA 58.500 37.500 13.91 0.00 42.20 2.52
3125 3307 6.125029 AGCTTTGCTACATCCATGTAAAGAT 58.875 36.000 13.91 7.58 42.20 2.40
3126 3308 6.261826 AGCTTTGCTACATCCATGTAAAGATC 59.738 38.462 13.91 0.00 42.20 2.75
3127 3309 6.261826 GCTTTGCTACATCCATGTAAAGATCT 59.738 38.462 13.91 0.00 42.20 2.75
3128 3310 7.201767 GCTTTGCTACATCCATGTAAAGATCTT 60.202 37.037 13.91 0.88 42.20 2.40
3129 3311 8.579850 TTTGCTACATCCATGTAAAGATCTTT 57.420 30.769 23.53 23.53 42.20 2.52
3130 3312 9.679661 TTTGCTACATCCATGTAAAGATCTTTA 57.320 29.630 21.46 21.46 42.20 1.85
3131 3313 9.851686 TTGCTACATCCATGTAAAGATCTTTAT 57.148 29.630 26.46 13.23 42.20 1.40
3132 3314 9.276590 TGCTACATCCATGTAAAGATCTTTATG 57.723 33.333 26.46 22.02 42.20 1.90
3133 3315 9.277783 GCTACATCCATGTAAAGATCTTTATGT 57.722 33.333 26.46 25.41 42.20 2.29
3148 3330 9.813446 AGATCTTTATGTAACCTACGTAAAAGG 57.187 33.333 10.57 6.76 44.77 3.11
3150 3332 8.761575 TCTTTATGTAACCTACGTAAAAGGTG 57.238 34.615 9.25 0.00 46.85 4.00
3151 3333 8.584157 TCTTTATGTAACCTACGTAAAAGGTGA 58.416 33.333 9.25 0.00 46.85 4.02
3152 3334 8.532977 TTTATGTAACCTACGTAAAAGGTGAC 57.467 34.615 14.45 14.45 46.85 3.67
3153 3335 4.881920 TGTAACCTACGTAAAAGGTGACC 58.118 43.478 17.46 0.00 46.85 4.02
3154 3336 4.588528 TGTAACCTACGTAAAAGGTGACCT 59.411 41.667 17.46 0.00 46.85 3.85
3155 3337 3.672767 ACCTACGTAAAAGGTGACCTG 57.327 47.619 4.15 0.00 45.78 4.00
3156 3338 2.301009 ACCTACGTAAAAGGTGACCTGG 59.699 50.000 4.15 1.24 45.78 4.45
3157 3339 2.344025 CTACGTAAAAGGTGACCTGGC 58.656 52.381 4.15 0.00 32.13 4.85
3158 3340 0.763035 ACGTAAAAGGTGACCTGGCT 59.237 50.000 4.15 0.00 32.13 4.75
3159 3341 1.156736 CGTAAAAGGTGACCTGGCTG 58.843 55.000 4.15 0.00 32.13 4.85
3160 3342 1.542547 CGTAAAAGGTGACCTGGCTGT 60.543 52.381 4.15 0.00 32.13 4.40
3161 3343 2.583143 GTAAAAGGTGACCTGGCTGTT 58.417 47.619 4.15 0.00 32.13 3.16
3162 3344 3.746940 GTAAAAGGTGACCTGGCTGTTA 58.253 45.455 4.15 0.00 32.13 2.41
3163 3345 2.271944 AAAGGTGACCTGGCTGTTAC 57.728 50.000 4.15 0.00 32.13 2.50
3164 3346 0.034896 AAGGTGACCTGGCTGTTACG 59.965 55.000 4.15 0.00 32.13 3.18
3165 3347 1.119574 AGGTGACCTGGCTGTTACGT 61.120 55.000 1.77 0.00 29.57 3.57
3166 3348 0.604578 GGTGACCTGGCTGTTACGTA 59.395 55.000 0.00 0.00 0.00 3.57
3167 3349 1.001181 GGTGACCTGGCTGTTACGTAA 59.999 52.381 3.29 3.29 0.00 3.18
3168 3350 5.178593 AGGTGACCTGGCTGTTACGTAAG 62.179 52.174 8.60 0.00 36.12 2.34
3226 3408 1.689813 TCACACCGCCAAAAGTCTAGA 59.310 47.619 0.00 0.00 0.00 2.43
3248 3430 9.554395 CTAGACTACTCTCTCACAAATCTATGA 57.446 37.037 0.00 0.00 0.00 2.15
3255 3437 5.028549 TCTCACAAATCTATGAAGGCCTC 57.971 43.478 5.23 0.00 0.00 4.70
3258 3440 4.018506 TCACAAATCTATGAAGGCCTCCAA 60.019 41.667 5.23 0.00 0.00 3.53
3261 3443 4.870021 AATCTATGAAGGCCTCCAACTT 57.130 40.909 5.23 0.00 0.00 2.66
3268 3450 0.846693 AGGCCTCCAACTTCAACACT 59.153 50.000 0.00 0.00 0.00 3.55
3279 3461 3.825328 ACTTCAACACTGGCATCTTTCT 58.175 40.909 0.00 0.00 0.00 2.52
3280 3462 4.973168 ACTTCAACACTGGCATCTTTCTA 58.027 39.130 0.00 0.00 0.00 2.10
3292 3474 6.053650 TGGCATCTTTCTAGTCATTGATCTG 58.946 40.000 0.00 0.00 0.00 2.90
3298 3480 7.851228 TCTTTCTAGTCATTGATCTGGCTAAA 58.149 34.615 0.00 0.00 33.19 1.85
3299 3481 8.321353 TCTTTCTAGTCATTGATCTGGCTAAAA 58.679 33.333 0.00 0.59 33.19 1.52
3300 3482 8.862325 TTTCTAGTCATTGATCTGGCTAAAAA 57.138 30.769 0.00 0.00 33.19 1.94
3301 3483 9.466497 TTTCTAGTCATTGATCTGGCTAAAAAT 57.534 29.630 0.00 0.00 33.19 1.82
3302 3484 8.668510 TCTAGTCATTGATCTGGCTAAAAATC 57.331 34.615 0.00 0.00 33.19 2.17
3304 3486 7.330900 AGTCATTGATCTGGCTAAAAATCTG 57.669 36.000 0.00 0.00 0.00 2.90
3305 3487 6.320672 AGTCATTGATCTGGCTAAAAATCTGG 59.679 38.462 0.00 0.00 0.00 3.86
3308 3490 6.515272 TTGATCTGGCTAAAAATCTGGTTC 57.485 37.500 0.00 0.00 0.00 3.62
3309 3491 5.819991 TGATCTGGCTAAAAATCTGGTTCT 58.180 37.500 0.00 0.00 0.00 3.01
3310 3492 6.248433 TGATCTGGCTAAAAATCTGGTTCTT 58.752 36.000 0.00 0.00 0.00 2.52
3311 3493 5.964958 TCTGGCTAAAAATCTGGTTCTTG 57.035 39.130 0.00 0.00 0.00 3.02
3316 3755 5.648092 GGCTAAAAATCTGGTTCTTGAGCTA 59.352 40.000 0.00 0.00 0.00 3.32
3322 3761 1.272490 CTGGTTCTTGAGCTACACCGA 59.728 52.381 0.00 0.00 0.00 4.69
3328 3767 2.560981 TCTTGAGCTACACCGATGTTCA 59.439 45.455 0.00 0.00 40.48 3.18
3334 3773 3.935203 AGCTACACCGATGTTCAGATTTG 59.065 43.478 0.00 0.00 40.48 2.32
3347 3786 3.889815 TCAGATTTGGTGAGCCCTATTG 58.110 45.455 0.00 0.00 0.00 1.90
3352 3791 4.591321 TTTGGTGAGCCCTATTGAAGAT 57.409 40.909 0.00 0.00 0.00 2.40
3356 3795 3.370953 GGTGAGCCCTATTGAAGATGTGT 60.371 47.826 0.00 0.00 0.00 3.72
3397 3836 1.641577 GACCAAGCCGTAGTGATGAC 58.358 55.000 0.00 0.00 0.00 3.06
3398 3837 0.973632 ACCAAGCCGTAGTGATGACA 59.026 50.000 0.00 0.00 0.00 3.58
3399 3838 1.346395 ACCAAGCCGTAGTGATGACAA 59.654 47.619 0.00 0.00 0.00 3.18
3411 3850 6.792250 CGTAGTGATGACAAATGAGTTGAAAC 59.208 38.462 0.00 0.00 39.87 2.78
3414 3853 5.687285 GTGATGACAAATGAGTTGAAACCAC 59.313 40.000 0.00 0.00 39.87 4.16
3415 3854 5.359292 TGATGACAAATGAGTTGAAACCACA 59.641 36.000 0.00 0.00 39.87 4.17
3422 3861 6.530019 AATGAGTTGAAACCACACTTTTCT 57.470 33.333 0.00 0.00 34.58 2.52
3425 3864 3.763897 AGTTGAAACCACACTTTTCTGCT 59.236 39.130 0.00 0.00 34.58 4.24
3434 4089 6.981722 ACCACACTTTTCTGCTTATTAAAGG 58.018 36.000 0.00 0.00 33.11 3.11
3440 4095 7.746475 CACTTTTCTGCTTATTAAAGGTTCTCG 59.254 37.037 0.00 0.00 33.11 4.04
3443 4098 3.275999 TGCTTATTAAAGGTTCTCGGCC 58.724 45.455 0.00 0.00 32.98 6.13
3449 4104 2.424842 AAAGGTTCTCGGCCCATGCA 62.425 55.000 0.00 0.00 40.13 3.96
3487 4142 4.128925 AGTATCATGTGTAGTGGTGCAG 57.871 45.455 0.00 0.00 0.00 4.41
3511 4166 3.196463 CACATTCAGACTCAGCTCATCC 58.804 50.000 0.00 0.00 0.00 3.51
3520 4175 3.023119 ACTCAGCTCATCCAGACAGTAG 58.977 50.000 0.00 0.00 0.00 2.57
3524 4179 2.763448 AGCTCATCCAGACAGTAGTTCC 59.237 50.000 0.00 0.00 0.00 3.62
3526 4181 3.055819 GCTCATCCAGACAGTAGTTCCAA 60.056 47.826 0.00 0.00 0.00 3.53
3531 4186 3.714798 TCCAGACAGTAGTTCCAAACCTT 59.285 43.478 0.00 0.00 0.00 3.50
3532 4187 3.815401 CCAGACAGTAGTTCCAAACCTTG 59.185 47.826 0.00 0.00 0.00 3.61
3553 4208 0.317020 GAGCGAAAACACACTGCACC 60.317 55.000 0.00 0.00 0.00 5.01
3565 4220 2.026915 ACACTGCACCAGAATATGCTCA 60.027 45.455 0.00 0.00 42.55 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 0.391130 TCCAGTGGAAATCTTCGCGG 60.391 55.000 10.20 0.00 0.00 6.46
88 89 1.737735 CTCATCTTGTGTGCGGCGA 60.738 57.895 12.98 0.00 0.00 5.54
95 96 0.607489 GCCAGCCACTCATCTTGTGT 60.607 55.000 0.00 0.00 33.92 3.72
99 100 0.957395 CGTTGCCAGCCACTCATCTT 60.957 55.000 0.00 0.00 0.00 2.40
102 103 1.376424 CTCGTTGCCAGCCACTCAT 60.376 57.895 0.00 0.00 0.00 2.90
104 105 2.731691 TTCCTCGTTGCCAGCCACTC 62.732 60.000 0.00 0.00 0.00 3.51
105 106 2.738213 CTTCCTCGTTGCCAGCCACT 62.738 60.000 0.00 0.00 0.00 4.00
117 128 1.153745 CGCCTTCCACTCTTCCTCG 60.154 63.158 0.00 0.00 0.00 4.63
137 148 2.158842 CCACTCATCTCCACTTCATCCC 60.159 54.545 0.00 0.00 0.00 3.85
161 172 2.557229 CCTTTCCACCATCACCCAATCA 60.557 50.000 0.00 0.00 0.00 2.57
162 173 2.102578 CCTTTCCACCATCACCCAATC 58.897 52.381 0.00 0.00 0.00 2.67
163 174 1.715931 TCCTTTCCACCATCACCCAAT 59.284 47.619 0.00 0.00 0.00 3.16
210 221 1.471153 GCGGGTTTAGAGTCCTAGCAC 60.471 57.143 0.00 0.00 0.00 4.40
219 230 2.284417 GCAATAGTTCGCGGGTTTAGAG 59.716 50.000 6.13 0.00 0.00 2.43
229 240 4.151798 GTCAACTTGAAGCAATAGTTCGC 58.848 43.478 0.00 0.00 30.08 4.70
244 255 0.874607 GAGTGTCGCCACGTCAACTT 60.875 55.000 0.00 0.00 46.56 2.66
245 256 1.299926 GAGTGTCGCCACGTCAACT 60.300 57.895 0.00 0.00 46.56 3.16
251 262 0.386352 TAAAGTCGAGTGTCGCCACG 60.386 55.000 0.00 0.00 46.56 4.94
282 295 2.227089 GAACTGGTCGCCGGATGACT 62.227 60.000 21.88 6.80 36.58 3.41
308 321 7.604545 TCGTGAGATATTAACCATTTCACAACA 59.395 33.333 16.49 4.14 34.63 3.33
320 333 4.683832 ACTGGTGCTCGTGAGATATTAAC 58.316 43.478 0.00 0.00 40.84 2.01
379 392 6.861065 ATTCAAGTGTATGTGAACGACTTT 57.139 33.333 0.00 0.00 36.62 2.66
386 399 7.170828 GTGTGAGTGTATTCAAGTGTATGTGAA 59.829 37.037 0.00 0.00 38.09 3.18
400 413 7.033791 CGTGAGTTTATAGGTGTGAGTGTATT 58.966 38.462 0.00 0.00 0.00 1.89
411 424 2.936498 GTGCATGCGTGAGTTTATAGGT 59.064 45.455 14.09 0.00 0.00 3.08
412 425 2.033747 CGTGCATGCGTGAGTTTATAGG 60.034 50.000 14.09 0.00 0.00 2.57
441 454 4.233789 GCTCTCTCGAAGGTGCTTATATG 58.766 47.826 0.00 0.00 0.00 1.78
443 456 2.623889 GGCTCTCTCGAAGGTGCTTATA 59.376 50.000 9.89 0.00 0.00 0.98
446 459 1.594310 GGCTCTCTCGAAGGTGCTT 59.406 57.895 9.89 0.00 0.00 3.91
469 486 6.605849 CAACTTTGTCAATCTCACGATGATT 58.394 36.000 0.00 0.00 34.82 2.57
482 499 1.400142 CGTCTGTGGCAACTTTGTCAA 59.600 47.619 0.00 0.00 45.39 3.18
487 504 0.751643 AAGGCGTCTGTGGCAACTTT 60.752 50.000 0.00 0.00 36.77 2.66
529 546 1.200716 GGTGATGTGCATTCAGTGTGG 59.799 52.381 2.81 0.00 0.00 4.17
531 548 1.159285 CGGTGATGTGCATTCAGTGT 58.841 50.000 2.81 0.00 0.00 3.55
540 557 4.695217 TTTAGATTTTCCGGTGATGTGC 57.305 40.909 0.00 0.00 0.00 4.57
569 586 3.936453 ACACTCGTGCTTACACTTTTTGA 59.064 39.130 0.00 0.00 45.10 2.69
570 587 4.273005 ACACTCGTGCTTACACTTTTTG 57.727 40.909 0.00 0.00 45.10 2.44
571 588 4.957759 AACACTCGTGCTTACACTTTTT 57.042 36.364 0.00 0.00 45.10 1.94
576 593 5.399604 AAACTTAACACTCGTGCTTACAC 57.600 39.130 0.00 0.00 43.76 2.90
683 700 8.044908 TCTCTTCTCTTCTCTCCTCTTTAGTAC 58.955 40.741 0.00 0.00 0.00 2.73
684 701 8.153221 TCTCTTCTCTTCTCTCCTCTTTAGTA 57.847 38.462 0.00 0.00 0.00 1.82
685 702 7.027874 TCTCTTCTCTTCTCTCCTCTTTAGT 57.972 40.000 0.00 0.00 0.00 2.24
686 703 7.338710 TCTCTCTTCTCTTCTCTCCTCTTTAG 58.661 42.308 0.00 0.00 0.00 1.85
778 798 2.736995 CGCGCGGAAGTGAAGGAA 60.737 61.111 24.84 0.00 46.66 3.36
823 843 7.912719 ACCCCTTTTGCTAATGCTAATAAAAA 58.087 30.769 0.00 0.00 40.48 1.94
826 846 7.327214 CAAACCCCTTTTGCTAATGCTAATAA 58.673 34.615 0.00 0.00 38.37 1.40
828 848 5.733676 CAAACCCCTTTTGCTAATGCTAAT 58.266 37.500 0.00 0.00 38.37 1.73
829 849 5.146010 CAAACCCCTTTTGCTAATGCTAA 57.854 39.130 0.00 0.00 38.37 3.09
830 850 4.799564 CAAACCCCTTTTGCTAATGCTA 57.200 40.909 0.00 0.00 38.37 3.49
831 851 3.683365 CAAACCCCTTTTGCTAATGCT 57.317 42.857 0.00 0.00 38.37 3.79
917 937 5.519927 CGAAAGGGAAATTCATTTATGTGCC 59.480 40.000 0.00 0.00 0.00 5.01
1000 1026 1.208052 CGTTGTCCTCTCCATGGTCAT 59.792 52.381 12.58 0.00 0.00 3.06
1098 1124 1.695114 CCCGGTGGCAGTGGATGATA 61.695 60.000 0.00 0.00 0.00 2.15
1433 1471 4.657824 CGTCCGCGTTGTCCAGGT 62.658 66.667 4.92 0.00 0.00 4.00
1482 1523 2.722201 ATCGAGGCCGAAGTGGTCC 61.722 63.158 0.00 0.00 46.71 4.46
1500 1541 1.446099 GCGAGCGTGGAAGATGACA 60.446 57.895 0.00 0.00 0.00 3.58
2436 2486 1.299976 GGCCTCCACCGTGAAATCT 59.700 57.895 0.00 0.00 0.00 2.40
2563 2613 7.472334 TCTTACATTAGTTTACGGAGGAAGT 57.528 36.000 0.00 0.00 0.00 3.01
2564 2614 6.476053 GCTCTTACATTAGTTTACGGAGGAAG 59.524 42.308 0.00 0.00 0.00 3.46
2565 2615 6.335777 GCTCTTACATTAGTTTACGGAGGAA 58.664 40.000 0.00 0.00 0.00 3.36
2566 2616 5.449588 CGCTCTTACATTAGTTTACGGAGGA 60.450 44.000 0.00 0.00 0.00 3.71
2567 2617 4.738740 CGCTCTTACATTAGTTTACGGAGG 59.261 45.833 0.00 0.00 0.00 4.30
2568 2618 5.338365 ACGCTCTTACATTAGTTTACGGAG 58.662 41.667 0.00 0.00 0.00 4.63
2569 2619 5.314923 ACGCTCTTACATTAGTTTACGGA 57.685 39.130 0.00 0.00 0.00 4.69
2570 2620 6.399204 AAACGCTCTTACATTAGTTTACGG 57.601 37.500 0.00 0.00 31.14 4.02
2571 2621 8.385789 TCTAAACGCTCTTACATTAGTTTACG 57.614 34.615 0.00 0.00 34.29 3.18
2574 2624 8.870879 GTGATCTAAACGCTCTTACATTAGTTT 58.129 33.333 0.00 0.00 36.11 2.66
2575 2625 8.251721 AGTGATCTAAACGCTCTTACATTAGTT 58.748 33.333 0.00 0.00 0.00 2.24
2576 2626 7.773149 AGTGATCTAAACGCTCTTACATTAGT 58.227 34.615 0.00 0.00 0.00 2.24
2577 2627 9.171701 GTAGTGATCTAAACGCTCTTACATTAG 57.828 37.037 0.00 0.00 0.00 1.73
2578 2628 8.900781 AGTAGTGATCTAAACGCTCTTACATTA 58.099 33.333 0.00 0.00 0.00 1.90
2579 2629 7.773149 AGTAGTGATCTAAACGCTCTTACATT 58.227 34.615 0.00 0.00 0.00 2.71
2580 2630 7.336161 AGTAGTGATCTAAACGCTCTTACAT 57.664 36.000 0.00 0.00 0.00 2.29
2581 2631 6.754702 AGTAGTGATCTAAACGCTCTTACA 57.245 37.500 0.00 0.00 0.00 2.41
2582 2632 9.224058 CTAAAGTAGTGATCTAAACGCTCTTAC 57.776 37.037 0.00 0.00 0.00 2.34
2583 2633 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2584 2634 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2585 2635 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2635 2685 9.150028 GAAAGGAGGGATTAGTACTTTCTCTAT 57.850 37.037 0.00 0.00 40.14 1.98
2636 2686 8.345306 AGAAAGGAGGGATTAGTACTTTCTCTA 58.655 37.037 0.00 0.00 46.45 2.43
2637 2687 7.193338 AGAAAGGAGGGATTAGTACTTTCTCT 58.807 38.462 0.00 3.99 46.45 3.10
2638 2688 7.426606 AGAAAGGAGGGATTAGTACTTTCTC 57.573 40.000 0.00 0.00 46.45 2.87
2640 2690 7.395617 ACAAGAAAGGAGGGATTAGTACTTTC 58.604 38.462 0.00 0.00 42.31 2.62
2641 2691 7.331089 ACAAGAAAGGAGGGATTAGTACTTT 57.669 36.000 0.00 0.00 0.00 2.66
2642 2692 6.954352 ACAAGAAAGGAGGGATTAGTACTT 57.046 37.500 0.00 0.00 0.00 2.24
2643 2693 6.954352 AACAAGAAAGGAGGGATTAGTACT 57.046 37.500 0.00 0.00 0.00 2.73
2646 2696 9.853177 CATATAAACAAGAAAGGAGGGATTAGT 57.147 33.333 0.00 0.00 0.00 2.24
2649 2699 9.942526 AATCATATAAACAAGAAAGGAGGGATT 57.057 29.630 0.00 0.00 0.00 3.01
2650 2700 9.942526 AAATCATATAAACAAGAAAGGAGGGAT 57.057 29.630 0.00 0.00 0.00 3.85
2677 2727 9.918630 CTACCTTGATTGTGAGATTTTTGAATT 57.081 29.630 0.00 0.00 0.00 2.17
2678 2728 9.300681 TCTACCTTGATTGTGAGATTTTTGAAT 57.699 29.630 0.00 0.00 0.00 2.57
2679 2729 8.690203 TCTACCTTGATTGTGAGATTTTTGAA 57.310 30.769 0.00 0.00 0.00 2.69
2680 2730 8.733458 CATCTACCTTGATTGTGAGATTTTTGA 58.267 33.333 0.00 0.00 0.00 2.69
2681 2731 7.972277 CCATCTACCTTGATTGTGAGATTTTTG 59.028 37.037 0.00 0.00 0.00 2.44
2682 2732 7.671398 ACCATCTACCTTGATTGTGAGATTTTT 59.329 33.333 0.00 0.00 0.00 1.94
2683 2733 7.121759 CACCATCTACCTTGATTGTGAGATTTT 59.878 37.037 0.00 0.00 40.42 1.82
2684 2734 6.600822 CACCATCTACCTTGATTGTGAGATTT 59.399 38.462 0.00 0.00 40.42 2.17
2685 2735 6.070021 TCACCATCTACCTTGATTGTGAGATT 60.070 38.462 7.14 0.00 41.25 2.40
2686 2736 5.426509 TCACCATCTACCTTGATTGTGAGAT 59.573 40.000 7.14 0.00 41.25 2.75
2687 2737 4.777366 TCACCATCTACCTTGATTGTGAGA 59.223 41.667 7.14 0.00 41.25 3.27
2688 2738 5.089970 TCACCATCTACCTTGATTGTGAG 57.910 43.478 7.14 0.00 41.25 3.51
2689 2739 4.532126 ACTCACCATCTACCTTGATTGTGA 59.468 41.667 9.82 9.82 42.75 3.58
2690 2740 4.633126 CACTCACCATCTACCTTGATTGTG 59.367 45.833 0.00 0.00 39.78 3.33
2691 2741 4.532126 TCACTCACCATCTACCTTGATTGT 59.468 41.667 0.00 0.00 0.00 2.71
2692 2742 5.089970 TCACTCACCATCTACCTTGATTG 57.910 43.478 0.00 0.00 0.00 2.67
2693 2743 5.426509 TCATCACTCACCATCTACCTTGATT 59.573 40.000 0.00 0.00 0.00 2.57
2694 2744 4.964897 TCATCACTCACCATCTACCTTGAT 59.035 41.667 0.00 0.00 0.00 2.57
2695 2745 4.352893 TCATCACTCACCATCTACCTTGA 58.647 43.478 0.00 0.00 0.00 3.02
2696 2746 4.743057 TCATCACTCACCATCTACCTTG 57.257 45.455 0.00 0.00 0.00 3.61
2697 2747 5.762179 TTTCATCACTCACCATCTACCTT 57.238 39.130 0.00 0.00 0.00 3.50
2698 2748 5.965033 ATTTCATCACTCACCATCTACCT 57.035 39.130 0.00 0.00 0.00 3.08
2699 2749 6.821388 ACTATTTCATCACTCACCATCTACC 58.179 40.000 0.00 0.00 0.00 3.18
2700 2750 8.723942 AAACTATTTCATCACTCACCATCTAC 57.276 34.615 0.00 0.00 0.00 2.59
2810 2860 5.833406 TTGACCAATGCATGTACCTTATG 57.167 39.130 0.00 0.00 0.00 1.90
2811 2861 7.422465 AAATTGACCAATGCATGTACCTTAT 57.578 32.000 0.00 0.00 0.00 1.73
2812 2862 6.849085 AAATTGACCAATGCATGTACCTTA 57.151 33.333 0.00 0.00 0.00 2.69
2813 2863 5.743636 AAATTGACCAATGCATGTACCTT 57.256 34.783 0.00 0.00 0.00 3.50
2814 2864 5.481473 AGAAAATTGACCAATGCATGTACCT 59.519 36.000 0.00 0.00 0.00 3.08
2815 2865 5.723295 AGAAAATTGACCAATGCATGTACC 58.277 37.500 0.00 0.00 0.00 3.34
2816 2866 6.624423 AGAGAAAATTGACCAATGCATGTAC 58.376 36.000 0.00 0.00 0.00 2.90
2817 2867 6.839124 AGAGAAAATTGACCAATGCATGTA 57.161 33.333 0.00 0.00 0.00 2.29
2818 2868 5.733620 AGAGAAAATTGACCAATGCATGT 57.266 34.783 0.00 0.00 0.00 3.21
2819 2869 8.712285 ATTAAGAGAAAATTGACCAATGCATG 57.288 30.769 0.00 0.00 0.00 4.06
2829 2879 9.872721 TGCATGCAAATATTAAGAGAAAATTGA 57.127 25.926 20.30 0.00 0.00 2.57
2833 2883 9.872721 TCATTGCATGCAAATATTAAGAGAAAA 57.127 25.926 34.84 8.63 39.55 2.29
2842 2892 8.841300 TGCATTAAATCATTGCATGCAAATATT 58.159 25.926 34.84 29.57 40.64 1.28
2843 2893 8.286800 GTGCATTAAATCATTGCATGCAAATAT 58.713 29.630 34.84 26.25 46.90 1.28
2844 2894 7.280205 TGTGCATTAAATCATTGCATGCAAATA 59.720 29.630 34.84 25.30 46.90 1.40
2845 2895 6.094186 TGTGCATTAAATCATTGCATGCAAAT 59.906 30.769 34.84 22.58 46.90 2.32
2846 2896 5.411669 TGTGCATTAAATCATTGCATGCAAA 59.588 32.000 34.84 21.31 46.90 3.68
2847 2897 4.935808 TGTGCATTAAATCATTGCATGCAA 59.064 33.333 33.57 33.57 46.90 4.08
2848 2898 4.504858 TGTGCATTAAATCATTGCATGCA 58.495 34.783 18.46 18.46 46.90 3.96
2849 2899 5.666969 ATGTGCATTAAATCATTGCATGC 57.333 34.783 11.82 11.82 46.90 4.06
2850 2900 7.240414 TCAATGTGCATTAAATCATTGCATG 57.760 32.000 16.54 0.11 46.90 4.06
2851 2901 7.851387 TTCAATGTGCATTAAATCATTGCAT 57.149 28.000 16.54 0.00 46.90 3.96
2852 2902 7.361031 GGTTTCAATGTGCATTAAATCATTGCA 60.361 33.333 16.54 7.02 43.56 4.08
2853 2903 6.962678 GGTTTCAATGTGCATTAAATCATTGC 59.037 34.615 16.54 6.74 43.56 3.56
2854 2904 8.172484 CAGGTTTCAATGTGCATTAAATCATTG 58.828 33.333 15.64 15.64 44.54 2.82
2855 2905 8.095792 TCAGGTTTCAATGTGCATTAAATCATT 58.904 29.630 0.00 0.00 0.00 2.57
2856 2906 7.613585 TCAGGTTTCAATGTGCATTAAATCAT 58.386 30.769 0.00 0.00 0.00 2.45
2857 2907 6.990798 TCAGGTTTCAATGTGCATTAAATCA 58.009 32.000 0.00 0.00 0.00 2.57
2858 2908 7.384660 TGTTCAGGTTTCAATGTGCATTAAATC 59.615 33.333 0.00 1.22 0.00 2.17
2859 2909 7.215789 TGTTCAGGTTTCAATGTGCATTAAAT 58.784 30.769 0.00 0.00 0.00 1.40
2860 2910 6.577103 TGTTCAGGTTTCAATGTGCATTAAA 58.423 32.000 0.00 0.00 0.00 1.52
2861 2911 6.154203 TGTTCAGGTTTCAATGTGCATTAA 57.846 33.333 0.00 0.00 0.00 1.40
2862 2912 5.781210 TGTTCAGGTTTCAATGTGCATTA 57.219 34.783 0.00 0.00 0.00 1.90
2863 2913 4.669206 TGTTCAGGTTTCAATGTGCATT 57.331 36.364 0.00 0.00 0.00 3.56
2864 2914 4.039488 ACATGTTCAGGTTTCAATGTGCAT 59.961 37.500 0.00 0.00 0.00 3.96
2865 2915 3.384146 ACATGTTCAGGTTTCAATGTGCA 59.616 39.130 0.00 0.00 0.00 4.57
2866 2916 3.737266 CACATGTTCAGGTTTCAATGTGC 59.263 43.478 0.00 0.00 33.04 4.57
2867 2917 5.185668 TCACATGTTCAGGTTTCAATGTG 57.814 39.130 0.00 7.16 39.37 3.21
2868 2918 5.302568 ACATCACATGTTCAGGTTTCAATGT 59.697 36.000 0.00 0.00 41.63 2.71
2869 2919 5.631929 CACATCACATGTTCAGGTTTCAATG 59.368 40.000 0.00 0.00 42.70 2.82
2870 2920 5.535783 TCACATCACATGTTCAGGTTTCAAT 59.464 36.000 0.00 0.00 42.70 2.57
2871 2921 4.886489 TCACATCACATGTTCAGGTTTCAA 59.114 37.500 0.00 0.00 42.70 2.69
2872 2922 4.459330 TCACATCACATGTTCAGGTTTCA 58.541 39.130 0.00 0.00 42.70 2.69
2873 2923 5.181811 TCATCACATCACATGTTCAGGTTTC 59.818 40.000 0.00 0.00 42.70 2.78
2874 2924 5.072055 TCATCACATCACATGTTCAGGTTT 58.928 37.500 0.00 0.00 42.70 3.27
2875 2925 4.654915 TCATCACATCACATGTTCAGGTT 58.345 39.130 0.00 0.00 42.70 3.50
2876 2926 4.019950 TCTCATCACATCACATGTTCAGGT 60.020 41.667 0.00 0.00 42.70 4.00
2877 2927 4.510571 TCTCATCACATCACATGTTCAGG 58.489 43.478 0.00 0.00 42.70 3.86
2878 2928 6.072893 TGTTTCTCATCACATCACATGTTCAG 60.073 38.462 0.00 0.00 42.70 3.02
2879 2929 5.764192 TGTTTCTCATCACATCACATGTTCA 59.236 36.000 0.00 0.00 42.70 3.18
2880 2930 6.245115 TGTTTCTCATCACATCACATGTTC 57.755 37.500 0.00 0.00 42.70 3.18
2881 2931 6.441274 GTTGTTTCTCATCACATCACATGTT 58.559 36.000 0.00 0.00 42.70 2.71
2882 2932 5.048504 GGTTGTTTCTCATCACATCACATGT 60.049 40.000 0.00 0.00 46.22 3.21
2883 2933 5.048573 TGGTTGTTTCTCATCACATCACATG 60.049 40.000 0.00 0.00 0.00 3.21
2884 2934 5.072055 TGGTTGTTTCTCATCACATCACAT 58.928 37.500 0.00 0.00 0.00 3.21
2885 2935 4.459330 TGGTTGTTTCTCATCACATCACA 58.541 39.130 0.00 0.00 0.00 3.58
2886 2936 5.437289 TTGGTTGTTTCTCATCACATCAC 57.563 39.130 0.00 0.00 0.00 3.06
2887 2937 6.653526 ATTTGGTTGTTTCTCATCACATCA 57.346 33.333 0.00 0.00 0.00 3.07
2888 2938 7.147312 TCAATTTGGTTGTTTCTCATCACATC 58.853 34.615 0.00 0.00 38.95 3.06
2889 2939 7.014518 TCTCAATTTGGTTGTTTCTCATCACAT 59.985 33.333 0.00 0.00 38.95 3.21
2890 2940 6.320926 TCTCAATTTGGTTGTTTCTCATCACA 59.679 34.615 0.00 0.00 38.95 3.58
2891 2941 6.738114 TCTCAATTTGGTTGTTTCTCATCAC 58.262 36.000 0.00 0.00 38.95 3.06
2892 2942 6.957920 TCTCAATTTGGTTGTTTCTCATCA 57.042 33.333 0.00 0.00 38.95 3.07
2893 2943 8.822652 AAATCTCAATTTGGTTGTTTCTCATC 57.177 30.769 0.00 0.00 38.95 2.92
2901 2951 9.927668 CCACTTTATAAATCTCAATTTGGTTGT 57.072 29.630 0.00 0.00 38.95 3.32
2943 2993 9.457436 TCTTTTTCGGTTTATAAGGCTTATCTT 57.543 29.630 22.39 3.57 0.00 2.40
2944 2994 9.110502 CTCTTTTTCGGTTTATAAGGCTTATCT 57.889 33.333 22.39 4.32 0.00 1.98
2945 2995 9.106070 TCTCTTTTTCGGTTTATAAGGCTTATC 57.894 33.333 22.39 9.18 0.00 1.75
2946 2996 9.110502 CTCTCTTTTTCGGTTTATAAGGCTTAT 57.889 33.333 22.36 22.36 0.00 1.73
2947 2997 8.316214 TCTCTCTTTTTCGGTTTATAAGGCTTA 58.684 33.333 9.79 9.79 0.00 3.09
2948 2998 7.166167 TCTCTCTTTTTCGGTTTATAAGGCTT 58.834 34.615 4.58 4.58 0.00 4.35
2949 2999 6.708285 TCTCTCTTTTTCGGTTTATAAGGCT 58.292 36.000 0.00 0.00 0.00 4.58
2950 3000 6.594547 ACTCTCTCTTTTTCGGTTTATAAGGC 59.405 38.462 0.00 0.00 0.00 4.35
2951 3001 9.649167 TTACTCTCTCTTTTTCGGTTTATAAGG 57.351 33.333 0.00 0.00 0.00 2.69
2956 3006 9.649167 CCTAATTACTCTCTCTTTTTCGGTTTA 57.351 33.333 0.00 0.00 0.00 2.01
2957 3007 8.155510 ACCTAATTACTCTCTCTTTTTCGGTTT 58.844 33.333 0.00 0.00 0.00 3.27
2958 3008 7.677892 ACCTAATTACTCTCTCTTTTTCGGTT 58.322 34.615 0.00 0.00 0.00 4.44
2959 3009 7.242322 ACCTAATTACTCTCTCTTTTTCGGT 57.758 36.000 0.00 0.00 0.00 4.69
2960 3010 7.921745 CCTACCTAATTACTCTCTCTTTTTCGG 59.078 40.741 0.00 0.00 0.00 4.30
2961 3011 8.684520 TCCTACCTAATTACTCTCTCTTTTTCG 58.315 37.037 0.00 0.00 0.00 3.46
2967 3017 9.675464 CGATTATCCTACCTAATTACTCTCTCT 57.325 37.037 0.00 0.00 0.00 3.10
2968 3018 9.669887 TCGATTATCCTACCTAATTACTCTCTC 57.330 37.037 0.00 0.00 0.00 3.20
2971 3021 8.688151 GCATCGATTATCCTACCTAATTACTCT 58.312 37.037 0.00 0.00 0.00 3.24
2972 3022 8.467598 TGCATCGATTATCCTACCTAATTACTC 58.532 37.037 0.00 0.00 0.00 2.59
2973 3023 8.362464 TGCATCGATTATCCTACCTAATTACT 57.638 34.615 0.00 0.00 0.00 2.24
2974 3024 8.870879 GTTGCATCGATTATCCTACCTAATTAC 58.129 37.037 0.00 0.00 0.00 1.89
2983 3033 4.991056 GCTTCTGTTGCATCGATTATCCTA 59.009 41.667 0.00 0.00 0.00 2.94
3016 3066 0.253610 ACGGTCCCAACAAGTCAACA 59.746 50.000 0.00 0.00 0.00 3.33
3029 3079 8.016801 TCTCGAAAATAAATTTACAAACGGTCC 58.983 33.333 0.00 0.00 0.00 4.46
3033 3083 8.231837 TCCCTCTCGAAAATAAATTTACAAACG 58.768 33.333 0.00 5.41 0.00 3.60
3073 3253 1.206132 TCGCATCCGATGTAAACCTGT 59.794 47.619 10.10 0.00 38.82 4.00
3074 3254 1.934589 TCGCATCCGATGTAAACCTG 58.065 50.000 10.10 0.00 38.82 4.00
3089 3271 1.337703 AGCAAAGCTTGAATGTTCGCA 59.662 42.857 0.00 0.00 33.89 5.10
3090 3272 2.056094 AGCAAAGCTTGAATGTTCGC 57.944 45.000 0.00 0.00 33.89 4.70
3091 3273 4.145876 TGTAGCAAAGCTTGAATGTTCG 57.854 40.909 0.00 0.00 40.44 3.95
3092 3274 5.098211 GGATGTAGCAAAGCTTGAATGTTC 58.902 41.667 0.00 0.00 40.44 3.18
3093 3275 4.523943 TGGATGTAGCAAAGCTTGAATGTT 59.476 37.500 0.00 0.00 40.44 2.71
3094 3276 4.081406 TGGATGTAGCAAAGCTTGAATGT 58.919 39.130 0.00 0.00 40.44 2.71
3095 3277 4.707030 TGGATGTAGCAAAGCTTGAATG 57.293 40.909 0.00 0.00 40.44 2.67
3096 3278 4.708421 ACATGGATGTAGCAAAGCTTGAAT 59.292 37.500 0.00 0.00 40.44 2.57
3097 3279 4.081406 ACATGGATGTAGCAAAGCTTGAA 58.919 39.130 0.00 0.00 40.44 2.69
3098 3280 3.689347 ACATGGATGTAGCAAAGCTTGA 58.311 40.909 0.00 0.00 40.44 3.02
3099 3281 5.565592 TTACATGGATGTAGCAAAGCTTG 57.434 39.130 0.00 0.00 43.44 4.01
3100 3282 5.945784 TCTTTACATGGATGTAGCAAAGCTT 59.054 36.000 0.00 0.00 43.44 3.74
3101 3283 5.500234 TCTTTACATGGATGTAGCAAAGCT 58.500 37.500 0.00 0.00 43.44 3.74
3102 3284 5.818136 TCTTTACATGGATGTAGCAAAGC 57.182 39.130 0.00 0.00 43.44 3.51
3103 3285 7.798596 AGATCTTTACATGGATGTAGCAAAG 57.201 36.000 0.00 6.99 43.44 2.77
3104 3286 8.579850 AAAGATCTTTACATGGATGTAGCAAA 57.420 30.769 19.17 0.00 43.44 3.68
3105 3287 9.851686 ATAAAGATCTTTACATGGATGTAGCAA 57.148 29.630 26.30 4.59 43.44 3.91
3106 3288 9.276590 CATAAAGATCTTTACATGGATGTAGCA 57.723 33.333 26.30 5.20 43.44 3.49
3107 3289 9.277783 ACATAAAGATCTTTACATGGATGTAGC 57.722 33.333 26.30 0.00 43.44 3.58
3122 3304 9.813446 CCTTTTACGTAGGTTACATAAAGATCT 57.187 33.333 11.73 0.00 29.55 2.75
3123 3305 9.591792 ACCTTTTACGTAGGTTACATAAAGATC 57.408 33.333 2.51 0.00 43.45 2.75
3124 3306 9.374838 CACCTTTTACGTAGGTTACATAAAGAT 57.625 33.333 5.74 0.00 43.45 2.40
3125 3307 8.584157 TCACCTTTTACGTAGGTTACATAAAGA 58.416 33.333 5.74 0.00 43.45 2.52
3126 3308 8.650714 GTCACCTTTTACGTAGGTTACATAAAG 58.349 37.037 13.17 9.34 43.45 1.85
3127 3309 7.602265 GGTCACCTTTTACGTAGGTTACATAAA 59.398 37.037 17.76 4.28 43.45 1.40
3128 3310 7.039082 AGGTCACCTTTTACGTAGGTTACATAA 60.039 37.037 17.76 0.00 43.45 1.90
3129 3311 6.437162 AGGTCACCTTTTACGTAGGTTACATA 59.563 38.462 17.76 0.00 43.45 2.29
3130 3312 5.246883 AGGTCACCTTTTACGTAGGTTACAT 59.753 40.000 17.76 10.82 43.45 2.29
3131 3313 4.588528 AGGTCACCTTTTACGTAGGTTACA 59.411 41.667 17.76 0.46 43.45 2.41
3132 3314 4.925646 CAGGTCACCTTTTACGTAGGTTAC 59.074 45.833 5.74 8.51 43.45 2.50
3133 3315 4.021192 CCAGGTCACCTTTTACGTAGGTTA 60.021 45.833 5.74 0.00 43.45 2.85
3134 3316 3.244318 CCAGGTCACCTTTTACGTAGGTT 60.244 47.826 5.74 0.00 43.45 3.50
3135 3317 2.301009 CCAGGTCACCTTTTACGTAGGT 59.699 50.000 2.51 2.51 46.87 3.08
3136 3318 2.933928 GCCAGGTCACCTTTTACGTAGG 60.934 54.545 0.00 1.13 38.79 3.18
3137 3319 2.028385 AGCCAGGTCACCTTTTACGTAG 60.028 50.000 0.00 0.00 0.00 3.51
3138 3320 1.972795 AGCCAGGTCACCTTTTACGTA 59.027 47.619 0.00 0.00 0.00 3.57
3139 3321 0.763035 AGCCAGGTCACCTTTTACGT 59.237 50.000 0.00 0.00 0.00 3.57
3140 3322 1.156736 CAGCCAGGTCACCTTTTACG 58.843 55.000 0.00 0.00 0.00 3.18
3141 3323 2.271944 ACAGCCAGGTCACCTTTTAC 57.728 50.000 0.00 0.00 0.00 2.01
3142 3324 3.746940 GTAACAGCCAGGTCACCTTTTA 58.253 45.455 0.00 0.00 0.00 1.52
3143 3325 2.583143 GTAACAGCCAGGTCACCTTTT 58.417 47.619 0.00 0.00 0.00 2.27
3144 3326 1.542547 CGTAACAGCCAGGTCACCTTT 60.543 52.381 0.00 0.00 0.00 3.11
3145 3327 0.034896 CGTAACAGCCAGGTCACCTT 59.965 55.000 0.00 0.00 0.00 3.50
3146 3328 1.119574 ACGTAACAGCCAGGTCACCT 61.120 55.000 0.00 0.00 0.00 4.00
3147 3329 0.604578 TACGTAACAGCCAGGTCACC 59.395 55.000 0.00 0.00 0.00 4.02
3148 3330 2.288640 ACTTACGTAACAGCCAGGTCAC 60.289 50.000 3.29 0.00 0.00 3.67
3149 3331 1.965643 ACTTACGTAACAGCCAGGTCA 59.034 47.619 3.29 0.00 0.00 4.02
3150 3332 2.230750 AGACTTACGTAACAGCCAGGTC 59.769 50.000 3.29 8.51 0.00 3.85
3151 3333 2.245582 AGACTTACGTAACAGCCAGGT 58.754 47.619 3.29 0.00 0.00 4.00
3152 3334 3.734293 GCTAGACTTACGTAACAGCCAGG 60.734 52.174 3.29 0.00 0.00 4.45
3153 3335 3.119602 TGCTAGACTTACGTAACAGCCAG 60.120 47.826 17.21 6.21 0.00 4.85
3154 3336 2.821378 TGCTAGACTTACGTAACAGCCA 59.179 45.455 17.21 5.00 0.00 4.75
3155 3337 3.498927 TGCTAGACTTACGTAACAGCC 57.501 47.619 17.21 0.00 0.00 4.85
3156 3338 6.404712 AAAATGCTAGACTTACGTAACAGC 57.595 37.500 3.29 10.88 0.00 4.40
3157 3339 6.736853 GCAAAAATGCTAGACTTACGTAACAG 59.263 38.462 3.29 0.00 0.00 3.16
3158 3340 6.595794 GCAAAAATGCTAGACTTACGTAACA 58.404 36.000 3.29 0.00 0.00 2.41
3159 3341 5.726679 CGCAAAAATGCTAGACTTACGTAAC 59.273 40.000 3.29 0.00 0.00 2.50
3160 3342 5.634439 TCGCAAAAATGCTAGACTTACGTAA 59.366 36.000 7.94 7.94 0.00 3.18
3161 3343 5.162794 TCGCAAAAATGCTAGACTTACGTA 58.837 37.500 0.00 0.00 0.00 3.57
3162 3344 3.991773 TCGCAAAAATGCTAGACTTACGT 59.008 39.130 0.00 0.00 0.00 3.57
3163 3345 4.577687 TCGCAAAAATGCTAGACTTACG 57.422 40.909 0.00 0.00 0.00 3.18
3164 3346 5.685841 TGTTCGCAAAAATGCTAGACTTAC 58.314 37.500 0.00 0.00 0.00 2.34
3165 3347 5.933187 TGTTCGCAAAAATGCTAGACTTA 57.067 34.783 0.00 0.00 0.00 2.24
3166 3348 4.829064 TGTTCGCAAAAATGCTAGACTT 57.171 36.364 0.00 0.00 0.00 3.01
3167 3349 5.048782 TGAATGTTCGCAAAAATGCTAGACT 60.049 36.000 0.00 0.00 0.00 3.24
3168 3350 5.153513 TGAATGTTCGCAAAAATGCTAGAC 58.846 37.500 0.00 0.00 0.00 2.59
3169 3351 5.369685 TGAATGTTCGCAAAAATGCTAGA 57.630 34.783 0.00 0.00 0.00 2.43
3170 3352 5.443693 GCTTGAATGTTCGCAAAAATGCTAG 60.444 40.000 0.00 0.00 0.00 3.42
3171 3353 4.385447 GCTTGAATGTTCGCAAAAATGCTA 59.615 37.500 0.00 0.00 0.00 3.49
3172 3354 3.184986 GCTTGAATGTTCGCAAAAATGCT 59.815 39.130 0.00 0.00 0.00 3.79
3173 3355 3.059733 TGCTTGAATGTTCGCAAAAATGC 60.060 39.130 0.00 0.00 0.00 3.56
3174 3356 4.712191 TGCTTGAATGTTCGCAAAAATG 57.288 36.364 0.00 0.00 0.00 2.32
3175 3357 5.731599 TTTGCTTGAATGTTCGCAAAAAT 57.268 30.435 14.27 0.00 45.85 1.82
3212 3394 4.396790 AGAGAGTAGTCTAGACTTTTGGCG 59.603 45.833 29.57 0.00 42.54 5.69
3226 3408 7.417342 GCCTTCATAGATTTGTGAGAGAGTAGT 60.417 40.741 0.00 0.00 0.00 2.73
3248 3430 1.215423 AGTGTTGAAGTTGGAGGCCTT 59.785 47.619 6.77 0.00 0.00 4.35
3255 3437 2.233271 AGATGCCAGTGTTGAAGTTGG 58.767 47.619 0.00 0.00 0.00 3.77
3258 3440 3.825328 AGAAAGATGCCAGTGTTGAAGT 58.175 40.909 0.00 0.00 0.00 3.01
3261 3443 4.040339 TGACTAGAAAGATGCCAGTGTTGA 59.960 41.667 0.00 0.00 0.00 3.18
3268 3450 6.053650 CAGATCAATGACTAGAAAGATGCCA 58.946 40.000 0.00 0.00 0.00 4.92
3279 3461 7.500227 CCAGATTTTTAGCCAGATCAATGACTA 59.500 37.037 0.00 0.00 0.00 2.59
3280 3462 6.320672 CCAGATTTTTAGCCAGATCAATGACT 59.679 38.462 0.00 0.00 0.00 3.41
3292 3474 4.460731 AGCTCAAGAACCAGATTTTTAGCC 59.539 41.667 0.00 0.00 0.00 3.93
3298 3480 4.327680 GGTGTAGCTCAAGAACCAGATTT 58.672 43.478 0.00 0.00 0.00 2.17
3299 3481 3.617531 CGGTGTAGCTCAAGAACCAGATT 60.618 47.826 0.00 0.00 0.00 2.40
3300 3482 2.093973 CGGTGTAGCTCAAGAACCAGAT 60.094 50.000 0.00 0.00 0.00 2.90
3301 3483 1.272490 CGGTGTAGCTCAAGAACCAGA 59.728 52.381 0.00 0.00 0.00 3.86
3302 3484 1.272490 TCGGTGTAGCTCAAGAACCAG 59.728 52.381 0.00 0.00 0.00 4.00
3304 3486 2.271800 CATCGGTGTAGCTCAAGAACC 58.728 52.381 0.00 0.00 0.00 3.62
3305 3487 2.960819 ACATCGGTGTAGCTCAAGAAC 58.039 47.619 0.00 0.00 36.63 3.01
3308 3490 2.926200 CTGAACATCGGTGTAGCTCAAG 59.074 50.000 0.00 0.00 37.67 3.02
3309 3491 2.560981 TCTGAACATCGGTGTAGCTCAA 59.439 45.455 0.00 0.00 37.67 3.02
3310 3492 2.167662 TCTGAACATCGGTGTAGCTCA 58.832 47.619 0.00 0.96 37.67 4.26
3311 3493 2.941453 TCTGAACATCGGTGTAGCTC 57.059 50.000 0.00 0.00 37.67 4.09
3316 3755 2.813754 CACCAAATCTGAACATCGGTGT 59.186 45.455 0.00 0.00 41.28 4.16
3322 3761 2.042162 AGGGCTCACCAAATCTGAACAT 59.958 45.455 0.00 0.00 43.89 2.71
3328 3767 4.228210 TCTTCAATAGGGCTCACCAAATCT 59.772 41.667 0.00 0.00 43.89 2.40
3334 3773 3.209410 CACATCTTCAATAGGGCTCACC 58.791 50.000 0.00 0.00 40.67 4.02
3347 3786 3.760684 AGCAAAGGAATCCACACATCTTC 59.239 43.478 0.61 0.00 0.00 2.87
3352 3791 2.238521 GGAAGCAAAGGAATCCACACA 58.761 47.619 0.61 0.00 32.08 3.72
3356 3795 2.517959 CTGTGGAAGCAAAGGAATCCA 58.482 47.619 0.61 0.00 39.57 3.41
3374 3813 2.094659 CACTACGGCTTGGTCGCTG 61.095 63.158 0.00 0.00 42.00 5.18
3397 3836 6.813152 AGAAAAGTGTGGTTTCAACTCATTTG 59.187 34.615 0.00 0.00 37.43 2.32
3398 3837 6.813152 CAGAAAAGTGTGGTTTCAACTCATTT 59.187 34.615 0.00 0.00 37.43 2.32
3399 3838 6.332630 CAGAAAAGTGTGGTTTCAACTCATT 58.667 36.000 0.00 0.00 37.43 2.57
3411 3850 6.981722 ACCTTTAATAAGCAGAAAAGTGTGG 58.018 36.000 0.00 0.00 0.00 4.17
3414 3853 7.746475 CGAGAACCTTTAATAAGCAGAAAAGTG 59.254 37.037 0.00 0.00 0.00 3.16
3415 3854 7.094762 CCGAGAACCTTTAATAAGCAGAAAAGT 60.095 37.037 0.00 0.00 0.00 2.66
3422 3861 3.275999 GGCCGAGAACCTTTAATAAGCA 58.724 45.455 0.00 0.00 0.00 3.91
3425 3864 4.204012 CATGGGCCGAGAACCTTTAATAA 58.796 43.478 0.00 0.00 0.00 1.40
3434 4089 3.512516 GCTGCATGGGCCGAGAAC 61.513 66.667 0.00 0.00 40.13 3.01
3443 4098 4.124351 CGCTTGGTGGCTGCATGG 62.124 66.667 0.50 0.00 0.00 3.66
3449 4104 0.250901 ACTTTCATCGCTTGGTGGCT 60.251 50.000 0.00 0.00 0.00 4.75
3483 4138 1.202675 TGAGTCTGAATGTGCACTGCA 60.203 47.619 19.41 11.98 35.60 4.41
3487 4142 1.731160 GAGCTGAGTCTGAATGTGCAC 59.269 52.381 10.75 10.75 0.00 4.57
3511 4166 3.251004 GCAAGGTTTGGAACTACTGTCTG 59.749 47.826 0.00 0.00 0.00 3.51
3520 4175 1.082104 CGCTCGCAAGGTTTGGAAC 60.082 57.895 0.00 0.00 38.47 3.62
3524 4179 1.120437 GTTTTCGCTCGCAAGGTTTG 58.880 50.000 0.00 0.00 38.47 2.93
3526 4181 0.028902 GTGTTTTCGCTCGCAAGGTT 59.971 50.000 0.00 0.00 38.47 3.50
3531 4186 1.641140 CAGTGTGTTTTCGCTCGCA 59.359 52.632 0.00 0.00 0.00 5.10
3532 4187 1.722507 GCAGTGTGTTTTCGCTCGC 60.723 57.895 0.00 0.00 0.00 5.03
3553 4208 5.406780 GGAGGATAACGTTGAGCATATTCTG 59.593 44.000 11.99 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.