Multiple sequence alignment - TraesCS2A01G223300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G223300 chr2A 100.000 4669 0 0 1 4669 218126839 218122171 0.000000e+00 8623.0
1 TraesCS2A01G223300 chr2D 95.430 4070 88 33 432 4414 199127747 199123689 0.000000e+00 6396.0
2 TraesCS2A01G223300 chr2D 88.578 429 44 5 1 427 199128456 199128031 2.490000e-142 516.0
3 TraesCS2A01G223300 chr2D 97.436 78 2 0 4592 4669 199123695 199123618 2.930000e-27 134.0
4 TraesCS2A01G223300 chr2B 95.822 3734 109 20 1 3692 375136761 375133033 0.000000e+00 5987.0
5 TraesCS2A01G223300 chr2B 96.685 724 16 5 3693 4414 375132927 375132210 0.000000e+00 1197.0
6 TraesCS2A01G223300 chr2B 96.154 78 3 0 4592 4669 375132216 375132139 1.360000e-25 128.0
7 TraesCS2A01G223300 chr2B 100.000 30 0 0 3831 3860 22840974 22841003 6.530000e-04 56.5
8 TraesCS2A01G223300 chr2B 100.000 30 0 0 3831 3860 22901172 22901201 6.530000e-04 56.5
9 TraesCS2A01G223300 chr4D 83.924 423 39 22 3867 4279 216749067 216749470 1.230000e-100 377.0
10 TraesCS2A01G223300 chr4D 91.525 118 9 1 3676 3793 216748916 216749032 1.340000e-35 161.0
11 TraesCS2A01G223300 chr7A 96.825 189 6 0 4415 4603 115736435 115736247 2.710000e-82 316.0
12 TraesCS2A01G223300 chr6B 94.565 184 8 2 4415 4598 566279824 566279643 2.750000e-72 283.0
13 TraesCS2A01G223300 chr6A 94.915 177 8 1 4415 4591 256483996 256483821 4.600000e-70 276.0
14 TraesCS2A01G223300 chr7D 93.085 188 10 3 4415 4601 194481919 194482104 5.950000e-69 272.0
15 TraesCS2A01G223300 chr7D 93.923 181 8 2 4415 4593 540860187 540860366 2.140000e-68 270.0
16 TraesCS2A01G223300 chr7D 100.000 34 0 0 729 762 53731180 53731213 3.900000e-06 63.9
17 TraesCS2A01G223300 chr7D 93.182 44 2 1 717 759 501387047 501387090 3.900000e-06 63.9
18 TraesCS2A01G223300 chr3A 93.889 180 7 3 4415 4592 593351786 593351609 7.700000e-68 268.0
19 TraesCS2A01G223300 chr5B 93.370 181 8 3 4415 4594 275235275 275235452 9.960000e-67 265.0
20 TraesCS2A01G223300 chr5B 94.737 38 2 0 728 765 228272286 228272249 5.050000e-05 60.2
21 TraesCS2A01G223300 chr6D 93.333 180 9 3 4416 4595 390489578 390489402 3.580000e-66 263.0
22 TraesCS2A01G223300 chr6D 89.362 47 5 0 716 762 319002144 319002190 5.050000e-05 60.2
23 TraesCS2A01G223300 chr3D 92.473 186 11 3 4415 4599 526977787 526977604 3.580000e-66 263.0
24 TraesCS2A01G223300 chr3D 95.238 42 2 0 725 766 53484624 53484665 3.020000e-07 67.6
25 TraesCS2A01G223300 chr5A 95.349 43 2 0 725 767 44805724 44805766 8.380000e-08 69.4
26 TraesCS2A01G223300 chr1B 100.000 36 0 0 729 764 59636016 59635981 3.020000e-07 67.6
27 TraesCS2A01G223300 chr3B 100.000 35 0 0 728 762 751943538 751943504 1.080000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G223300 chr2A 218122171 218126839 4668 True 8623.000000 8623 100.000000 1 4669 1 chr2A.!!$R1 4668
1 TraesCS2A01G223300 chr2D 199123618 199128456 4838 True 2348.666667 6396 93.814667 1 4669 3 chr2D.!!$R1 4668
2 TraesCS2A01G223300 chr2B 375132139 375136761 4622 True 2437.333333 5987 96.220333 1 4669 3 chr2B.!!$R1 4668
3 TraesCS2A01G223300 chr4D 216748916 216749470 554 False 269.000000 377 87.724500 3676 4279 2 chr4D.!!$F1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 193 0.463833 CCCATTTAGGCCAGACCGTC 60.464 60.000 5.01 0.0 46.52 4.79 F
835 1165 0.617820 ACTACGGGAGCCACAGGATT 60.618 55.000 0.00 0.0 0.00 3.01 F
989 1327 1.383248 CGGTCTCCCCTTCCTGGAT 60.383 63.158 0.00 0.0 38.35 3.41 F
1885 2235 0.179045 GGTCCATGGCTACTGCGATT 60.179 55.000 6.96 0.0 40.82 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1162 1509 0.108945 GCGGTGGTAGTAAGCGAACT 60.109 55.000 0.00 0.00 40.84 3.01 R
1885 2235 0.321919 GCATTCTCCAGCTCACCACA 60.322 55.000 0.00 0.00 0.00 4.17 R
2747 3097 1.005340 CATCCACTCGAGCAGCTTTC 58.995 55.000 13.61 0.00 0.00 2.62 R
3774 4249 2.607635 TCGCATAAGAATTCTGAACGGC 59.392 45.455 9.17 6.57 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.876460 GTCAAAATAGCCCAAAATCAAGCAT 59.124 36.000 0.00 0.00 0.00 3.79
45 46 3.364549 CCCAAAATCAAGCATCCTGGTA 58.635 45.455 0.00 0.00 0.00 3.25
190 193 0.463833 CCCATTTAGGCCAGACCGTC 60.464 60.000 5.01 0.00 46.52 4.79
208 211 2.348104 CCCGTGTCGGTCCATCTGA 61.348 63.158 7.40 0.00 46.80 3.27
253 256 1.671054 AGTACCATGCGTGCGCTTT 60.671 52.632 17.49 2.68 42.51 3.51
254 257 1.209127 GTACCATGCGTGCGCTTTT 59.791 52.632 17.49 3.82 42.51 2.27
269 272 2.030007 CGCTTTTCACACATTCACCCAT 60.030 45.455 0.00 0.00 0.00 4.00
276 280 4.151121 TCACACATTCACCCATCACAAAT 58.849 39.130 0.00 0.00 0.00 2.32
279 283 4.022068 ACACATTCACCCATCACAAATGAC 60.022 41.667 0.00 0.00 37.79 3.06
319 323 3.126831 GTCTAGCATGGTGGAGATTTCG 58.873 50.000 11.58 0.00 0.00 3.46
390 394 2.365586 CCTGCCTGCAGCTACTCCT 61.366 63.158 13.63 0.00 44.23 3.69
398 402 2.168106 CTGCAGCTACTCCTGAATCACT 59.832 50.000 0.00 0.00 34.77 3.41
590 874 6.836007 TGGAGATGCTCTAACTATCTCTTTGA 59.164 38.462 11.78 0.00 43.88 2.69
613 897 8.635765 TGAAATAAGAGAAAATAGCCTTGTGT 57.364 30.769 0.00 0.00 0.00 3.72
614 898 9.077885 TGAAATAAGAGAAAATAGCCTTGTGTT 57.922 29.630 0.00 0.00 0.00 3.32
618 920 6.502136 AGAGAAAATAGCCTTGTGTTAAGC 57.498 37.500 0.00 0.00 0.00 3.09
621 923 7.177392 AGAGAAAATAGCCTTGTGTTAAGCAAT 59.823 33.333 0.00 0.00 0.00 3.56
622 924 7.670364 AGAAAATAGCCTTGTGTTAAGCAATT 58.330 30.769 0.00 0.00 0.00 2.32
623 925 7.814587 AGAAAATAGCCTTGTGTTAAGCAATTC 59.185 33.333 0.00 0.00 0.00 2.17
626 928 7.938140 ATAGCCTTGTGTTAAGCAATTCTAA 57.062 32.000 0.00 0.00 0.00 2.10
627 929 6.013842 AGCCTTGTGTTAAGCAATTCTAAC 57.986 37.500 0.00 0.00 0.00 2.34
628 930 5.770162 AGCCTTGTGTTAAGCAATTCTAACT 59.230 36.000 0.00 0.00 0.00 2.24
646 948 7.589958 TCTAACTATCATCTGGTTTCTCTCC 57.410 40.000 0.00 0.00 30.31 3.71
647 949 5.622346 AACTATCATCTGGTTTCTCTCCC 57.378 43.478 0.00 0.00 0.00 4.30
648 950 3.970640 ACTATCATCTGGTTTCTCTCCCC 59.029 47.826 0.00 0.00 0.00 4.81
649 951 1.584724 TCATCTGGTTTCTCTCCCCC 58.415 55.000 0.00 0.00 0.00 5.40
676 978 6.046286 TCCCCCTATAAAACAGGTTTTCTCTT 59.954 38.462 12.96 1.74 41.39 2.85
723 1025 8.763356 TGTTTGTTATGTGAAAATGATCTTTGC 58.237 29.630 0.00 0.00 0.00 3.68
774 1077 5.033507 TGTGTCACGTGATTTGTGAAAATG 58.966 37.500 23.12 0.00 46.99 2.32
787 1090 9.301153 GATTTGTGAAAATGATATTTTAGCCGT 57.699 29.630 0.00 0.00 0.00 5.68
812 1142 7.915293 TTCATCCATGAAAATGTAGTAACGT 57.085 32.000 0.00 0.00 43.26 3.99
814 1144 7.100409 TCATCCATGAAAATGTAGTAACGTGA 58.900 34.615 0.00 0.00 33.08 4.35
816 1146 9.040939 CATCCATGAAAATGTAGTAACGTGATA 57.959 33.333 0.00 0.00 0.00 2.15
835 1165 0.617820 ACTACGGGAGCCACAGGATT 60.618 55.000 0.00 0.00 0.00 3.01
989 1327 1.383248 CGGTCTCCCCTTCCTGGAT 60.383 63.158 0.00 0.00 38.35 3.41
1301 1648 4.421554 CCCAGGCTCCCTCCCTCA 62.422 72.222 0.00 0.00 0.00 3.86
1717 2067 1.760192 CCTTCCCCTTGATGAAGCAG 58.240 55.000 0.00 0.00 37.29 4.24
1885 2235 0.179045 GGTCCATGGCTACTGCGATT 60.179 55.000 6.96 0.00 40.82 3.34
2349 2699 4.900684 TCCGAGTTCACAATGAAATGGTA 58.099 39.130 0.00 0.00 38.22 3.25
2747 3097 3.052793 TCAGGTAGGGTAGAAGGAGGAAG 60.053 52.174 0.00 0.00 0.00 3.46
2799 3149 0.875728 TCCGCCCAAATGTTGTAACG 59.124 50.000 0.00 0.00 0.00 3.18
2929 3279 5.704354 ACAATATATTGATCAAGGGGCACA 58.296 37.500 28.13 0.00 40.14 4.57
3098 3448 2.025887 AGATGCGAAAGGAGGGTTTGAT 60.026 45.455 0.00 0.00 32.19 2.57
3350 3700 3.851098 ACTCACGAAAAGCACTATCCTC 58.149 45.455 0.00 0.00 0.00 3.71
3405 3774 5.825593 AATCACTTCTTCTAAGGGTGACA 57.174 39.130 15.88 3.05 39.69 3.58
3441 3810 7.520614 GCCGCTATATAGCTCAACAATTTCTTT 60.521 37.037 27.71 0.00 46.85 2.52
3774 4249 3.244112 TGCTCATATCCTGCATCTGACTG 60.244 47.826 0.00 0.00 0.00 3.51
3881 4356 6.524101 TGCTTGTCCTTTGTTTTACTTCTT 57.476 33.333 0.00 0.00 0.00 2.52
3882 4357 6.560711 TGCTTGTCCTTTGTTTTACTTCTTC 58.439 36.000 0.00 0.00 0.00 2.87
4157 4660 4.588899 AGCCAAGACAATAAGTATGCACA 58.411 39.130 0.00 0.00 0.00 4.57
4159 4662 5.653769 AGCCAAGACAATAAGTATGCACAAT 59.346 36.000 0.00 0.00 0.00 2.71
4378 4881 2.069273 GACTTTGGTGTCCATCGTCTG 58.931 52.381 9.25 0.00 33.36 3.51
4420 4923 5.621193 ACATTGGTGATATAACACTAGGGC 58.379 41.667 12.30 0.00 40.22 5.19
4421 4924 5.131977 ACATTGGTGATATAACACTAGGGCA 59.868 40.000 12.30 0.00 40.22 5.36
4422 4925 4.682778 TGGTGATATAACACTAGGGCAC 57.317 45.455 12.30 0.00 40.22 5.01
4423 4926 4.034410 TGGTGATATAACACTAGGGCACA 58.966 43.478 12.30 0.00 40.22 4.57
4424 4927 4.658435 TGGTGATATAACACTAGGGCACAT 59.342 41.667 12.30 0.00 40.22 3.21
4425 4928 5.221641 TGGTGATATAACACTAGGGCACATC 60.222 44.000 12.30 0.00 40.22 3.06
4426 4929 5.012148 GGTGATATAACACTAGGGCACATCT 59.988 44.000 12.30 0.00 40.22 2.90
4427 4930 6.210784 GGTGATATAACACTAGGGCACATCTA 59.789 42.308 12.30 0.00 40.22 1.98
4428 4931 7.316640 GTGATATAACACTAGGGCACATCTAG 58.683 42.308 5.92 0.00 39.88 2.43
4429 4932 7.176865 GTGATATAACACTAGGGCACATCTAGA 59.823 40.741 5.92 0.00 38.02 2.43
4430 4933 7.895962 TGATATAACACTAGGGCACATCTAGAT 59.104 37.037 0.00 0.00 38.02 1.98
4431 4934 4.679373 AACACTAGGGCACATCTAGATG 57.321 45.455 27.63 27.63 44.15 2.90
4456 4959 6.878317 TGCTCTAGTTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
4457 4960 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
4458 4961 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
4459 4962 7.043059 GCTCTAGTTATTGCACATCTAAGTGAC 60.043 40.741 0.00 0.00 42.05 3.67
4460 4963 8.067751 TCTAGTTATTGCACATCTAAGTGACT 57.932 34.615 0.00 0.00 42.05 3.41
4461 4964 8.191446 TCTAGTTATTGCACATCTAAGTGACTC 58.809 37.037 0.00 0.00 42.05 3.36
4462 4965 6.701340 AGTTATTGCACATCTAAGTGACTCA 58.299 36.000 0.00 0.00 42.05 3.41
4463 4966 7.161404 AGTTATTGCACATCTAAGTGACTCAA 58.839 34.615 0.00 0.00 42.05 3.02
4464 4967 7.826252 AGTTATTGCACATCTAAGTGACTCAAT 59.174 33.333 0.00 0.00 42.05 2.57
4465 4968 6.674694 ATTGCACATCTAAGTGACTCAATC 57.325 37.500 0.00 0.00 42.05 2.67
4466 4969 5.151297 TGCACATCTAAGTGACTCAATCA 57.849 39.130 0.00 0.00 42.05 2.57
4467 4970 5.550290 TGCACATCTAAGTGACTCAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
4468 4971 5.640783 TGCACATCTAAGTGACTCAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
4469 4972 5.447010 GCACATCTAAGTGACTCAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
4470 4973 5.873712 CACATCTAAGTGACTCAATCAAGCT 59.126 40.000 0.00 0.00 42.05 3.74
4471 4974 7.038048 CACATCTAAGTGACTCAATCAAGCTA 58.962 38.462 0.00 0.00 42.05 3.32
4472 4975 7.222417 CACATCTAAGTGACTCAATCAAGCTAG 59.778 40.741 0.00 0.00 42.05 3.42
4473 4976 7.123397 ACATCTAAGTGACTCAATCAAGCTAGA 59.877 37.037 0.00 0.00 39.72 2.43
4474 4977 7.468141 TCTAAGTGACTCAATCAAGCTAGAA 57.532 36.000 0.00 0.00 39.72 2.10
4475 4978 7.896811 TCTAAGTGACTCAATCAAGCTAGAAA 58.103 34.615 0.00 0.00 39.72 2.52
4476 4979 8.031864 TCTAAGTGACTCAATCAAGCTAGAAAG 58.968 37.037 0.00 0.00 39.72 2.62
4477 4980 6.352016 AGTGACTCAATCAAGCTAGAAAGA 57.648 37.500 0.00 0.00 39.72 2.52
4478 4981 6.763355 AGTGACTCAATCAAGCTAGAAAGAA 58.237 36.000 0.00 0.00 39.72 2.52
4479 4982 7.220030 AGTGACTCAATCAAGCTAGAAAGAAA 58.780 34.615 0.00 0.00 39.72 2.52
4480 4983 7.716998 AGTGACTCAATCAAGCTAGAAAGAAAA 59.283 33.333 0.00 0.00 39.72 2.29
4481 4984 8.345565 GTGACTCAATCAAGCTAGAAAGAAAAA 58.654 33.333 0.00 0.00 39.72 1.94
4482 4985 8.562892 TGACTCAATCAAGCTAGAAAGAAAAAG 58.437 33.333 0.00 0.00 33.02 2.27
4483 4986 8.682936 ACTCAATCAAGCTAGAAAGAAAAAGA 57.317 30.769 0.00 0.00 0.00 2.52
4484 4987 9.125026 ACTCAATCAAGCTAGAAAGAAAAAGAA 57.875 29.630 0.00 0.00 0.00 2.52
4485 4988 9.956720 CTCAATCAAGCTAGAAAGAAAAAGAAA 57.043 29.630 0.00 0.00 0.00 2.52
4508 5011 5.641777 AAAGACGAAAGAAAAATGCTTGC 57.358 34.783 0.00 0.00 0.00 4.01
4509 5012 4.305989 AGACGAAAGAAAAATGCTTGCA 57.694 36.364 0.00 0.00 0.00 4.08
4510 5013 4.044426 AGACGAAAGAAAAATGCTTGCAC 58.956 39.130 0.00 0.00 0.00 4.57
4511 5014 3.779759 ACGAAAGAAAAATGCTTGCACA 58.220 36.364 0.00 0.00 0.00 4.57
4512 5015 4.180057 ACGAAAGAAAAATGCTTGCACAA 58.820 34.783 0.00 0.00 0.00 3.33
4513 5016 4.629200 ACGAAAGAAAAATGCTTGCACAAA 59.371 33.333 0.00 0.00 0.00 2.83
4514 5017 5.294060 ACGAAAGAAAAATGCTTGCACAAAT 59.706 32.000 0.00 0.00 0.00 2.32
4515 5018 5.842327 CGAAAGAAAAATGCTTGCACAAATC 59.158 36.000 0.00 0.00 0.00 2.17
4516 5019 6.292488 CGAAAGAAAAATGCTTGCACAAATCT 60.292 34.615 0.00 0.00 0.00 2.40
4517 5020 6.930667 AAGAAAAATGCTTGCACAAATCTT 57.069 29.167 0.00 3.97 0.00 2.40
4518 5021 8.436046 AAAGAAAAATGCTTGCACAAATCTTA 57.564 26.923 12.52 0.00 0.00 2.10
4519 5022 7.647907 AGAAAAATGCTTGCACAAATCTTAG 57.352 32.000 0.00 0.00 0.00 2.18
4520 5023 5.851047 AAAATGCTTGCACAAATCTTAGC 57.149 34.783 0.00 0.00 0.00 3.09
4521 5024 2.617250 TGCTTGCACAAATCTTAGCG 57.383 45.000 0.00 0.00 0.00 4.26
4522 5025 1.879380 TGCTTGCACAAATCTTAGCGT 59.121 42.857 0.00 0.00 0.00 5.07
4523 5026 3.070748 TGCTTGCACAAATCTTAGCGTA 58.929 40.909 0.00 0.00 0.00 4.42
4524 5027 3.500299 TGCTTGCACAAATCTTAGCGTAA 59.500 39.130 0.00 0.00 0.00 3.18
4525 5028 4.023622 TGCTTGCACAAATCTTAGCGTAAA 60.024 37.500 0.00 0.00 0.00 2.01
4526 5029 4.915085 GCTTGCACAAATCTTAGCGTAAAA 59.085 37.500 0.00 0.00 0.00 1.52
4527 5030 5.572896 GCTTGCACAAATCTTAGCGTAAAAT 59.427 36.000 0.00 0.00 0.00 1.82
4528 5031 6.237306 GCTTGCACAAATCTTAGCGTAAAATC 60.237 38.462 0.00 0.00 0.00 2.17
4529 5032 6.247727 TGCACAAATCTTAGCGTAAAATCA 57.752 33.333 0.00 0.00 0.00 2.57
4530 5033 6.673106 TGCACAAATCTTAGCGTAAAATCAA 58.327 32.000 0.00 0.00 0.00 2.57
4531 5034 7.312154 TGCACAAATCTTAGCGTAAAATCAAT 58.688 30.769 0.00 0.00 0.00 2.57
4532 5035 7.273164 TGCACAAATCTTAGCGTAAAATCAATG 59.727 33.333 0.00 0.00 0.00 2.82
4533 5036 7.484641 GCACAAATCTTAGCGTAAAATCAATGA 59.515 33.333 0.00 0.00 0.00 2.57
4534 5037 8.788813 CACAAATCTTAGCGTAAAATCAATGAC 58.211 33.333 0.00 0.00 0.00 3.06
4535 5038 8.511321 ACAAATCTTAGCGTAAAATCAATGACA 58.489 29.630 0.00 0.00 0.00 3.58
4536 5039 9.507280 CAAATCTTAGCGTAAAATCAATGACAT 57.493 29.630 0.00 0.00 0.00 3.06
4539 5042 8.365399 TCTTAGCGTAAAATCAATGACATAGG 57.635 34.615 0.00 0.00 0.00 2.57
4540 5043 8.201464 TCTTAGCGTAAAATCAATGACATAGGA 58.799 33.333 0.00 0.00 0.00 2.94
4541 5044 6.604735 AGCGTAAAATCAATGACATAGGAC 57.395 37.500 0.00 0.00 0.00 3.85
4542 5045 6.349300 AGCGTAAAATCAATGACATAGGACT 58.651 36.000 0.00 0.00 0.00 3.85
4543 5046 6.823689 AGCGTAAAATCAATGACATAGGACTT 59.176 34.615 0.00 0.00 0.00 3.01
4544 5047 7.985184 AGCGTAAAATCAATGACATAGGACTTA 59.015 33.333 0.00 0.00 0.00 2.24
4545 5048 8.276325 GCGTAAAATCAATGACATAGGACTTAG 58.724 37.037 0.00 0.00 0.00 2.18
4546 5049 9.529325 CGTAAAATCAATGACATAGGACTTAGA 57.471 33.333 0.00 0.00 0.00 2.10
4549 5052 9.911788 AAAATCAATGACATAGGACTTAGATGT 57.088 29.630 0.00 0.00 36.52 3.06
4550 5053 8.899427 AATCAATGACATAGGACTTAGATGTG 57.101 34.615 0.00 0.00 33.99 3.21
4551 5054 6.283694 TCAATGACATAGGACTTAGATGTGC 58.716 40.000 0.00 0.00 33.99 4.57
4552 5055 5.876651 ATGACATAGGACTTAGATGTGCA 57.123 39.130 0.00 0.00 33.99 4.57
4553 5056 5.675684 TGACATAGGACTTAGATGTGCAA 57.324 39.130 0.00 0.00 33.99 4.08
4554 5057 6.239217 TGACATAGGACTTAGATGTGCAAT 57.761 37.500 0.00 0.00 33.99 3.56
4555 5058 7.360113 TGACATAGGACTTAGATGTGCAATA 57.640 36.000 0.00 0.00 33.99 1.90
4556 5059 7.210174 TGACATAGGACTTAGATGTGCAATAC 58.790 38.462 0.00 0.00 33.99 1.89
4557 5060 7.069950 TGACATAGGACTTAGATGTGCAATACT 59.930 37.037 0.00 0.00 33.99 2.12
4558 5061 7.796054 ACATAGGACTTAGATGTGCAATACTT 58.204 34.615 0.00 0.00 32.62 2.24
4559 5062 8.924303 ACATAGGACTTAGATGTGCAATACTTA 58.076 33.333 0.00 0.00 32.62 2.24
4560 5063 9.416794 CATAGGACTTAGATGTGCAATACTTAG 57.583 37.037 0.00 0.00 0.00 2.18
4561 5064 7.661536 AGGACTTAGATGTGCAATACTTAGA 57.338 36.000 0.00 0.00 0.00 2.10
4562 5065 7.721402 AGGACTTAGATGTGCAATACTTAGAG 58.279 38.462 0.00 0.00 0.00 2.43
4563 5066 6.422400 GGACTTAGATGTGCAATACTTAGAGC 59.578 42.308 0.00 0.00 0.00 4.09
4564 5067 6.878317 ACTTAGATGTGCAATACTTAGAGCA 58.122 36.000 0.00 0.00 34.10 4.26
4572 5075 6.715347 TGCAATACTTAGAGCACATCTAGA 57.285 37.500 0.00 0.00 41.57 2.43
4573 5076 7.295322 TGCAATACTTAGAGCACATCTAGAT 57.705 36.000 0.00 0.00 41.57 1.98
4574 5077 7.150640 TGCAATACTTAGAGCACATCTAGATG 58.849 38.462 27.63 27.63 41.57 2.90
4648 5151 9.362539 GAGATGCTTGAAATCATGTTTGTTTAT 57.637 29.630 0.00 0.00 0.00 1.40
4660 5163 8.969260 TCATGTTTGTTTATCTGATAGCATCT 57.031 30.769 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.183360 GCTTGATTTTGGGCTATTTTGACATG 60.183 38.462 0.00 0.00 0.00 3.21
13 14 5.221601 TGCTTGATTTTGGGCTATTTTGACA 60.222 36.000 0.00 0.00 0.00 3.58
15 16 5.480642 TGCTTGATTTTGGGCTATTTTGA 57.519 34.783 0.00 0.00 0.00 2.69
75 77 2.186160 CAGGCACGGCACAACAAGA 61.186 57.895 0.00 0.00 0.00 3.02
121 124 3.141522 TAATACGCAGGCCGGGTCG 62.142 63.158 17.75 10.37 41.75 4.79
131 134 1.520564 CAGGCACGCCTAATACGCA 60.521 57.895 10.95 0.00 46.28 5.24
170 173 0.912487 ACGGTCTGGCCTAAATGGGA 60.912 55.000 3.32 0.00 36.00 4.37
253 256 3.220674 TGTGATGGGTGAATGTGTGAA 57.779 42.857 0.00 0.00 0.00 3.18
254 257 2.947127 TGTGATGGGTGAATGTGTGA 57.053 45.000 0.00 0.00 0.00 3.58
269 272 2.857483 ACATTGACGGGTCATTTGTGA 58.143 42.857 13.74 0.00 39.64 3.58
276 280 3.495377 CGAAGTTAAACATTGACGGGTCA 59.505 43.478 0.00 0.00 37.91 4.02
319 323 2.985847 AGCAGAAACGCCTTGGGC 60.986 61.111 0.00 0.00 46.75 5.36
390 394 4.876107 GGCGAAAGGAAAGATAGTGATTCA 59.124 41.667 0.00 0.00 0.00 2.57
398 402 3.259064 CGAAGTGGCGAAAGGAAAGATA 58.741 45.455 0.00 0.00 0.00 1.98
428 432 7.849804 ACGTTGTTAGAGCATCAAGAAATAT 57.150 32.000 0.00 0.00 37.82 1.28
538 822 2.224329 TGATGCAAAACAAGGCAAGCAT 60.224 40.909 0.00 0.00 44.20 3.79
539 823 1.138464 TGATGCAAAACAAGGCAAGCA 59.862 42.857 0.00 0.00 44.20 3.91
540 824 1.868469 TGATGCAAAACAAGGCAAGC 58.132 45.000 0.00 0.00 44.20 4.01
609 893 9.890629 AGATGATAGTTAGAATTGCTTAACACA 57.109 29.630 0.00 0.00 0.00 3.72
613 897 9.905713 AACCAGATGATAGTTAGAATTGCTTAA 57.094 29.630 0.00 0.00 0.00 1.85
614 898 9.905713 AAACCAGATGATAGTTAGAATTGCTTA 57.094 29.630 0.00 0.00 0.00 3.09
618 920 9.829507 AGAGAAACCAGATGATAGTTAGAATTG 57.170 33.333 0.00 0.00 0.00 2.32
621 923 7.070074 GGGAGAGAAACCAGATGATAGTTAGAA 59.930 40.741 0.00 0.00 0.00 2.10
622 924 6.551601 GGGAGAGAAACCAGATGATAGTTAGA 59.448 42.308 0.00 0.00 0.00 2.10
623 925 6.239458 GGGGAGAGAAACCAGATGATAGTTAG 60.239 46.154 0.00 0.00 0.00 2.34
626 928 3.970640 GGGGAGAGAAACCAGATGATAGT 59.029 47.826 0.00 0.00 0.00 2.12
627 929 3.326297 GGGGGAGAGAAACCAGATGATAG 59.674 52.174 0.00 0.00 0.00 2.08
628 930 3.318313 GGGGGAGAGAAACCAGATGATA 58.682 50.000 0.00 0.00 0.00 2.15
646 948 1.780919 CTGTTTTATAGGGGGAGGGGG 59.219 57.143 0.00 0.00 0.00 5.40
647 949 1.780919 CCTGTTTTATAGGGGGAGGGG 59.219 57.143 0.00 0.00 0.00 4.79
648 950 2.499515 ACCTGTTTTATAGGGGGAGGG 58.500 52.381 0.00 0.00 39.71 4.30
649 951 4.603094 AAACCTGTTTTATAGGGGGAGG 57.397 45.455 0.00 0.00 39.71 4.30
650 952 5.827756 AGAAAACCTGTTTTATAGGGGGAG 58.172 41.667 7.91 0.00 42.26 4.30
651 953 5.554350 AGAGAAAACCTGTTTTATAGGGGGA 59.446 40.000 7.91 0.00 42.26 4.81
652 954 5.827756 AGAGAAAACCTGTTTTATAGGGGG 58.172 41.667 7.91 0.00 42.26 5.40
653 955 7.670140 AGAAAGAGAAAACCTGTTTTATAGGGG 59.330 37.037 7.91 0.00 42.26 4.79
726 1028 9.206870 CATGTGGTAAGCAATTCAAACTATTTT 57.793 29.630 0.00 0.00 0.00 1.82
774 1077 7.202016 TCATGGATGAAACGGCTAAAATATC 57.798 36.000 0.00 0.00 33.08 1.63
812 1142 1.399714 CTGTGGCTCCCGTAGTATCA 58.600 55.000 0.00 0.00 0.00 2.15
814 1144 0.260816 TCCTGTGGCTCCCGTAGTAT 59.739 55.000 0.00 0.00 0.00 2.12
816 1146 0.617820 AATCCTGTGGCTCCCGTAGT 60.618 55.000 0.00 0.00 0.00 2.73
835 1165 2.892640 CTGGTCAGCCGGATCGAA 59.107 61.111 5.05 0.00 43.97 3.71
1162 1509 0.108945 GCGGTGGTAGTAAGCGAACT 60.109 55.000 0.00 0.00 40.84 3.01
1301 1648 1.700576 GGAGGGGAATGAAGGGGAGAT 60.701 57.143 0.00 0.00 0.00 2.75
1717 2067 1.531578 GAGTTCTCGGAACAAGGCAAC 59.468 52.381 15.94 0.00 0.00 4.17
1785 2135 3.315142 CTTGAGCCGGCCTGCACTA 62.315 63.158 26.15 11.05 0.00 2.74
1885 2235 0.321919 GCATTCTCCAGCTCACCACA 60.322 55.000 0.00 0.00 0.00 4.17
2349 2699 1.407656 TTGGTGCCACTCTTCTCCGT 61.408 55.000 0.00 0.00 0.00 4.69
2747 3097 1.005340 CATCCACTCGAGCAGCTTTC 58.995 55.000 13.61 0.00 0.00 2.62
2929 3279 6.319911 GCCTCTTTCATATTTCTTGCCTTACT 59.680 38.462 0.00 0.00 0.00 2.24
3098 3448 5.483685 ACTGTAAACATCTGGTTCAGCTA 57.516 39.130 0.00 0.00 39.29 3.32
3350 3700 6.712095 TCAATTGCTAGTTTAGGATGGCATAG 59.288 38.462 0.00 0.00 0.00 2.23
3404 3773 2.696989 TATAGCGGCCATGATCCATG 57.303 50.000 2.24 0.00 41.10 3.66
3405 3774 3.244353 GCTATATAGCGGCCATGATCCAT 60.244 47.826 18.61 0.00 39.82 3.41
3682 4052 6.649973 TGTTTTGCTGGGATCAAATTACAATG 59.350 34.615 0.00 0.00 33.94 2.82
3683 4053 6.767456 TGTTTTGCTGGGATCAAATTACAAT 58.233 32.000 0.00 0.00 33.94 2.71
3689 4059 6.211184 TGACTATTGTTTTGCTGGGATCAAAT 59.789 34.615 0.00 0.00 33.94 2.32
3699 4174 5.248477 TCCTAGGAGTGACTATTGTTTTGCT 59.752 40.000 7.62 0.00 0.00 3.91
3774 4249 2.607635 TCGCATAAGAATTCTGAACGGC 59.392 45.455 9.17 6.57 0.00 5.68
3803 4278 4.443978 ACATCCATCCATTACAAGGAGG 57.556 45.455 0.00 0.00 38.83 4.30
3881 4356 3.220110 ACGTGGAACTCTCTTACACTGA 58.780 45.455 0.00 0.00 31.75 3.41
3882 4357 3.644884 ACGTGGAACTCTCTTACACTG 57.355 47.619 0.00 0.00 31.75 3.66
4157 4660 5.337956 TCCACCCTATAATGGATGCAATT 57.662 39.130 0.00 0.00 40.17 2.32
4159 4662 4.805140 TTCCACCCTATAATGGATGCAA 57.195 40.909 0.00 0.00 44.49 4.08
4378 4881 6.183360 CCAATGTGACTATGTGGTTATGTGAC 60.183 42.308 0.00 0.00 0.00 3.67
4432 4935 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
4433 4936 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
4434 4937 8.194104 AGTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
4435 4938 8.067751 AGTCACTTAGATGTGCAATAACTAGA 57.932 34.615 0.00 0.00 37.81 2.43
4436 4939 7.976175 TGAGTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
4437 4940 7.836842 TGAGTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
4438 4941 6.701340 TGAGTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
4439 4942 6.968131 TGAGTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
4440 4943 7.823799 TGATTGAGTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
4441 4944 7.330262 TGATTGAGTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
4442 4945 6.175471 TGATTGAGTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
4443 4946 5.550290 TGATTGAGTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
4444 4947 5.151297 TGATTGAGTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
4445 4948 5.447010 GCTTGATTGAGTCACTTAGATGTGC 60.447 44.000 0.00 0.00 36.32 4.57
4446 4949 5.873712 AGCTTGATTGAGTCACTTAGATGTG 59.126 40.000 0.00 0.00 36.32 3.21
4447 4950 6.047511 AGCTTGATTGAGTCACTTAGATGT 57.952 37.500 0.00 0.00 36.32 3.06
4448 4951 7.487484 TCTAGCTTGATTGAGTCACTTAGATG 58.513 38.462 0.00 0.00 36.32 2.90
4449 4952 7.652524 TCTAGCTTGATTGAGTCACTTAGAT 57.347 36.000 0.00 0.00 36.32 1.98
4450 4953 7.468141 TTCTAGCTTGATTGAGTCACTTAGA 57.532 36.000 0.00 0.00 36.32 2.10
4451 4954 8.031864 TCTTTCTAGCTTGATTGAGTCACTTAG 58.968 37.037 0.00 0.00 36.32 2.18
4452 4955 7.896811 TCTTTCTAGCTTGATTGAGTCACTTA 58.103 34.615 0.00 0.00 36.32 2.24
4453 4956 6.763355 TCTTTCTAGCTTGATTGAGTCACTT 58.237 36.000 0.00 0.00 36.32 3.16
4454 4957 6.352016 TCTTTCTAGCTTGATTGAGTCACT 57.648 37.500 0.00 0.00 36.32 3.41
4455 4958 7.426929 TTTCTTTCTAGCTTGATTGAGTCAC 57.573 36.000 0.00 0.00 36.32 3.67
4456 4959 8.450578 TTTTTCTTTCTAGCTTGATTGAGTCA 57.549 30.769 0.00 0.00 34.25 3.41
4457 4960 8.778358 TCTTTTTCTTTCTAGCTTGATTGAGTC 58.222 33.333 0.00 0.00 0.00 3.36
4458 4961 8.682936 TCTTTTTCTTTCTAGCTTGATTGAGT 57.317 30.769 0.00 0.00 0.00 3.41
4459 4962 9.956720 TTTCTTTTTCTTTCTAGCTTGATTGAG 57.043 29.630 0.00 0.00 0.00 3.02
4484 4987 6.091986 TGCAAGCATTTTTCTTTCGTCTTTTT 59.908 30.769 0.00 0.00 0.00 1.94
4485 4988 5.580297 TGCAAGCATTTTTCTTTCGTCTTTT 59.420 32.000 0.00 0.00 0.00 2.27
4486 4989 5.005682 GTGCAAGCATTTTTCTTTCGTCTTT 59.994 36.000 0.00 0.00 0.00 2.52
4487 4990 4.504097 GTGCAAGCATTTTTCTTTCGTCTT 59.496 37.500 0.00 0.00 0.00 3.01
4488 4991 4.044426 GTGCAAGCATTTTTCTTTCGTCT 58.956 39.130 0.00 0.00 0.00 4.18
4489 4992 3.796178 TGTGCAAGCATTTTTCTTTCGTC 59.204 39.130 0.00 0.00 0.00 4.20
4490 4993 3.779759 TGTGCAAGCATTTTTCTTTCGT 58.220 36.364 0.00 0.00 0.00 3.85
4491 4994 4.775440 TTGTGCAAGCATTTTTCTTTCG 57.225 36.364 0.00 0.00 0.00 3.46
4492 4995 6.951643 AGATTTGTGCAAGCATTTTTCTTTC 58.048 32.000 0.00 0.00 0.00 2.62
4493 4996 6.930667 AGATTTGTGCAAGCATTTTTCTTT 57.069 29.167 0.00 0.00 0.00 2.52
4494 4997 6.930667 AAGATTTGTGCAAGCATTTTTCTT 57.069 29.167 0.00 3.19 0.00 2.52
4495 4998 6.146673 GCTAAGATTTGTGCAAGCATTTTTCT 59.853 34.615 0.00 0.00 0.00 2.52
4496 4999 6.301861 GCTAAGATTTGTGCAAGCATTTTTC 58.698 36.000 0.00 0.00 0.00 2.29
4497 5000 5.107375 CGCTAAGATTTGTGCAAGCATTTTT 60.107 36.000 0.00 0.00 0.00 1.94
4498 5001 4.386652 CGCTAAGATTTGTGCAAGCATTTT 59.613 37.500 0.00 0.00 0.00 1.82
4499 5002 3.922240 CGCTAAGATTTGTGCAAGCATTT 59.078 39.130 0.00 0.00 0.00 2.32
4500 5003 3.057315 ACGCTAAGATTTGTGCAAGCATT 60.057 39.130 0.00 0.00 0.00 3.56
4501 5004 2.489329 ACGCTAAGATTTGTGCAAGCAT 59.511 40.909 0.00 0.00 0.00 3.79
4502 5005 1.879380 ACGCTAAGATTTGTGCAAGCA 59.121 42.857 3.87 0.00 0.00 3.91
4503 5006 2.619013 ACGCTAAGATTTGTGCAAGC 57.381 45.000 0.00 0.00 0.00 4.01
4504 5007 6.801377 TGATTTTACGCTAAGATTTGTGCAAG 59.199 34.615 0.00 0.00 0.00 4.01
4505 5008 6.673106 TGATTTTACGCTAAGATTTGTGCAA 58.327 32.000 0.00 0.00 0.00 4.08
4506 5009 6.247727 TGATTTTACGCTAAGATTTGTGCA 57.752 33.333 0.00 0.00 0.00 4.57
4507 5010 7.484641 TCATTGATTTTACGCTAAGATTTGTGC 59.515 33.333 0.00 0.00 0.00 4.57
4508 5011 8.788813 GTCATTGATTTTACGCTAAGATTTGTG 58.211 33.333 0.00 0.00 0.00 3.33
4509 5012 8.511321 TGTCATTGATTTTACGCTAAGATTTGT 58.489 29.630 0.00 0.00 0.00 2.83
4510 5013 8.894409 TGTCATTGATTTTACGCTAAGATTTG 57.106 30.769 0.00 0.00 0.00 2.32
4513 5016 8.993121 CCTATGTCATTGATTTTACGCTAAGAT 58.007 33.333 0.00 0.00 0.00 2.40
4514 5017 8.201464 TCCTATGTCATTGATTTTACGCTAAGA 58.799 33.333 0.00 0.00 0.00 2.10
4515 5018 8.276325 GTCCTATGTCATTGATTTTACGCTAAG 58.724 37.037 0.00 0.00 0.00 2.18
4516 5019 7.985184 AGTCCTATGTCATTGATTTTACGCTAA 59.015 33.333 0.00 0.00 0.00 3.09
4517 5020 7.497595 AGTCCTATGTCATTGATTTTACGCTA 58.502 34.615 0.00 0.00 0.00 4.26
4518 5021 6.349300 AGTCCTATGTCATTGATTTTACGCT 58.651 36.000 0.00 0.00 0.00 5.07
4519 5022 6.604735 AGTCCTATGTCATTGATTTTACGC 57.395 37.500 0.00 0.00 0.00 4.42
4520 5023 9.529325 TCTAAGTCCTATGTCATTGATTTTACG 57.471 33.333 0.00 0.00 0.00 3.18
4523 5026 9.911788 ACATCTAAGTCCTATGTCATTGATTTT 57.088 29.630 0.00 0.00 0.00 1.82
4524 5027 9.334947 CACATCTAAGTCCTATGTCATTGATTT 57.665 33.333 0.00 0.00 31.60 2.17
4525 5028 7.443575 GCACATCTAAGTCCTATGTCATTGATT 59.556 37.037 0.00 0.00 31.60 2.57
4526 5029 6.933521 GCACATCTAAGTCCTATGTCATTGAT 59.066 38.462 0.00 0.00 31.60 2.57
4527 5030 6.127083 TGCACATCTAAGTCCTATGTCATTGA 60.127 38.462 0.00 0.00 31.60 2.57
4528 5031 6.051074 TGCACATCTAAGTCCTATGTCATTG 58.949 40.000 0.00 0.00 31.60 2.82
4529 5032 6.239217 TGCACATCTAAGTCCTATGTCATT 57.761 37.500 0.00 0.00 31.60 2.57
4530 5033 5.876651 TGCACATCTAAGTCCTATGTCAT 57.123 39.130 0.00 0.00 31.60 3.06
4531 5034 5.675684 TTGCACATCTAAGTCCTATGTCA 57.324 39.130 0.00 0.00 31.60 3.58
4532 5035 7.437748 AGTATTGCACATCTAAGTCCTATGTC 58.562 38.462 0.00 0.00 31.60 3.06
4533 5036 7.366847 AGTATTGCACATCTAAGTCCTATGT 57.633 36.000 0.00 0.00 34.22 2.29
4534 5037 9.416794 CTAAGTATTGCACATCTAAGTCCTATG 57.583 37.037 0.00 0.00 0.00 2.23
4535 5038 9.368416 TCTAAGTATTGCACATCTAAGTCCTAT 57.632 33.333 0.00 0.00 0.00 2.57
4536 5039 8.762481 TCTAAGTATTGCACATCTAAGTCCTA 57.238 34.615 0.00 0.00 0.00 2.94
4537 5040 7.661536 TCTAAGTATTGCACATCTAAGTCCT 57.338 36.000 0.00 0.00 0.00 3.85
4538 5041 6.422400 GCTCTAAGTATTGCACATCTAAGTCC 59.578 42.308 0.00 0.00 0.00 3.85
4539 5042 6.980978 TGCTCTAAGTATTGCACATCTAAGTC 59.019 38.462 0.00 0.00 0.00 3.01
4540 5043 6.878317 TGCTCTAAGTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
4549 5052 6.715347 TCTAGATGTGCTCTAAGTATTGCA 57.285 37.500 0.00 0.00 36.02 4.08
4550 5053 7.579589 CATCTAGATGTGCTCTAAGTATTGC 57.420 40.000 22.42 0.00 36.02 3.56
4581 5084 9.030452 TCCCATATTTTGTTATACAGTTTTGCT 57.970 29.630 0.00 0.00 0.00 3.91
4582 5085 9.301153 CTCCCATATTTTGTTATACAGTTTTGC 57.699 33.333 0.00 0.00 0.00 3.68
4583 5086 9.801873 CCTCCCATATTTTGTTATACAGTTTTG 57.198 33.333 0.00 0.00 0.00 2.44
4584 5087 9.762381 TCCTCCCATATTTTGTTATACAGTTTT 57.238 29.630 0.00 0.00 0.00 2.43
4585 5088 9.408648 CTCCTCCCATATTTTGTTATACAGTTT 57.591 33.333 0.00 0.00 0.00 2.66
4586 5089 8.778059 TCTCCTCCCATATTTTGTTATACAGTT 58.222 33.333 0.00 0.00 0.00 3.16
4587 5090 8.331931 TCTCCTCCCATATTTTGTTATACAGT 57.668 34.615 0.00 0.00 0.00 3.55
4588 5091 9.277783 CTTCTCCTCCCATATTTTGTTATACAG 57.722 37.037 0.00 0.00 0.00 2.74
4589 5092 8.217799 CCTTCTCCTCCCATATTTTGTTATACA 58.782 37.037 0.00 0.00 0.00 2.29
4590 5093 8.218488 ACCTTCTCCTCCCATATTTTGTTATAC 58.782 37.037 0.00 0.00 0.00 1.47
4591 5094 8.344939 ACCTTCTCCTCCCATATTTTGTTATA 57.655 34.615 0.00 0.00 0.00 0.98
4592 5095 7.226059 ACCTTCTCCTCCCATATTTTGTTAT 57.774 36.000 0.00 0.00 0.00 1.89
4593 5096 6.652205 ACCTTCTCCTCCCATATTTTGTTA 57.348 37.500 0.00 0.00 0.00 2.41
4594 5097 5.536497 ACCTTCTCCTCCCATATTTTGTT 57.464 39.130 0.00 0.00 0.00 2.83
4595 5098 5.254032 AGAACCTTCTCCTCCCATATTTTGT 59.746 40.000 0.00 0.00 29.94 2.83
4596 5099 5.760131 AGAACCTTCTCCTCCCATATTTTG 58.240 41.667 0.00 0.00 29.94 2.44
4597 5100 6.408770 AAGAACCTTCTCCTCCCATATTTT 57.591 37.500 0.00 0.00 36.28 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.