Multiple sequence alignment - TraesCS2A01G223000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G223000 chr2A 100.000 5680 0 0 1 5680 214896884 214902563 0.000000e+00 10490.0
1 TraesCS2A01G223000 chr2A 81.400 500 76 12 2193 2682 214898992 214899484 5.330000e-105 392.0
2 TraesCS2A01G223000 chr2A 81.400 500 76 12 2109 2601 214899076 214899565 5.330000e-105 392.0
3 TraesCS2A01G223000 chr2A 79.702 537 93 11 2151 2679 214898992 214899520 1.930000e-99 374.0
4 TraesCS2A01G223000 chr2A 79.702 537 93 11 2109 2637 214899034 214899562 1.930000e-99 374.0
5 TraesCS2A01G223000 chr2A 91.018 167 13 2 5420 5585 170607799 170607634 2.060000e-54 224.0
6 TraesCS2A01G223000 chr2A 96.739 92 3 0 5586 5677 408506749 408506840 2.740000e-33 154.0
7 TraesCS2A01G223000 chr2A 95.652 92 4 0 5586 5677 726226807 726226898 1.280000e-31 148.0
8 TraesCS2A01G223000 chr2A 94.231 52 2 1 5232 5282 54877090 54877141 1.700000e-10 78.7
9 TraesCS2A01G223000 chr2D 96.430 5294 96 17 1 5233 198130422 198135683 0.000000e+00 8643.0
10 TraesCS2A01G223000 chr2D 81.400 500 76 12 2109 2601 198132614 198133103 5.330000e-105 392.0
11 TraesCS2A01G223000 chr2D 80.261 537 90 12 2109 2637 198132572 198133100 1.920000e-104 390.0
12 TraesCS2A01G223000 chr2D 80.074 537 91 11 2151 2679 198132530 198133058 8.930000e-103 385.0
13 TraesCS2A01G223000 chr2D 81.000 500 78 12 2193 2682 198132530 198133022 1.150000e-101 381.0
14 TraesCS2A01G223000 chr2D 94.898 98 3 1 5295 5392 198135682 198135777 9.860000e-33 152.0
15 TraesCS2A01G223000 chr2D 85.507 69 5 3 5232 5296 37929019 37928952 3.670000e-07 67.6
16 TraesCS2A01G223000 chr2B 97.033 4921 94 20 366 5243 254874606 254879517 0.000000e+00 8231.0
17 TraesCS2A01G223000 chr2B 94.892 372 12 4 1 371 254868830 254869195 4.940000e-160 575.0
18 TraesCS2A01G223000 chr2B 80.037 536 93 9 2151 2679 254876352 254876880 8.930000e-103 385.0
19 TraesCS2A01G223000 chr2B 80.800 500 79 12 2193 2682 254876352 254876844 5.370000e-100 375.0
20 TraesCS2A01G223000 chr2B 80.800 500 79 12 2109 2601 254876436 254876925 5.370000e-100 375.0
21 TraesCS2A01G223000 chr7A 92.216 167 10 3 5420 5585 5358076 5357912 3.420000e-57 233.0
22 TraesCS2A01G223000 chr7A 90.643 171 14 2 5416 5585 690772485 690772654 5.730000e-55 226.0
23 TraesCS2A01G223000 chr7A 91.515 165 11 3 5422 5585 82517413 82517575 2.060000e-54 224.0
24 TraesCS2A01G223000 chr7A 90.419 167 15 1 5419 5585 571812477 571812642 9.580000e-53 219.0
25 TraesCS2A01G223000 chr7A 95.789 95 4 0 5586 5680 95228527 95228433 2.740000e-33 154.0
26 TraesCS2A01G223000 chr7A 94.737 95 5 0 5586 5680 5357968 5357874 1.280000e-31 148.0
27 TraesCS2A01G223000 chr7A 94.737 95 5 0 5586 5680 64562463 64562369 1.280000e-31 148.0
28 TraesCS2A01G223000 chr7A 95.652 92 4 0 5586 5677 82517519 82517610 1.280000e-31 148.0
29 TraesCS2A01G223000 chr6A 91.617 167 12 2 5420 5585 59329926 59329761 4.430000e-56 230.0
30 TraesCS2A01G223000 chr6A 94.737 95 5 0 5586 5680 59329817 59329723 1.280000e-31 148.0
31 TraesCS2A01G223000 chr5A 91.566 166 12 2 5420 5585 69515641 69515804 1.590000e-55 228.0
32 TraesCS2A01G223000 chr5A 91.018 167 13 2 5420 5585 694553363 694553528 2.060000e-54 224.0
33 TraesCS2A01G223000 chr1A 90.964 166 13 2 5420 5585 24828705 24828868 7.410000e-54 222.0
34 TraesCS2A01G223000 chr1A 97.849 93 2 0 5588 5680 439075215 439075307 1.640000e-35 161.0
35 TraesCS2A01G223000 chr1A 95.652 92 4 0 5586 5677 377030435 377030526 1.280000e-31 148.0
36 TraesCS2A01G223000 chr5B 90.476 63 3 3 5229 5289 62043060 62042999 4.720000e-11 80.5
37 TraesCS2A01G223000 chr7B 88.235 68 2 4 5232 5296 505461468 505461404 6.100000e-10 76.8
38 TraesCS2A01G223000 chr3D 89.831 59 5 1 5232 5289 171139819 171139761 2.190000e-09 75.0
39 TraesCS2A01G223000 chr3D 88.889 63 4 1 5232 5294 532341956 532342015 2.190000e-09 75.0
40 TraesCS2A01G223000 chr3D 88.889 63 4 1 5232 5294 532342728 532342787 2.190000e-09 75.0
41 TraesCS2A01G223000 chr4B 86.765 68 4 1 5232 5294 105958131 105958198 2.840000e-08 71.3
42 TraesCS2A01G223000 chr5D 85.294 68 8 2 5229 5294 253371803 253371736 1.020000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G223000 chr2A 214896884 214902563 5679 False 2404.400000 10490 84.440800 1 5680 5 chr2A.!!$F4 5679
1 TraesCS2A01G223000 chr2D 198130422 198135777 5355 False 1723.833333 8643 85.677167 1 5392 6 chr2D.!!$F1 5391
2 TraesCS2A01G223000 chr2B 254874606 254879517 4911 False 2341.500000 8231 84.667500 366 5243 4 chr2B.!!$F2 4877

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 225 0.108138 CAGGGTCTAAGCGGTTGAGG 60.108 60.000 10.73 0.35 0.00 3.86 F
226 227 0.108281 GGGTCTAAGCGGTTGAGGAC 60.108 60.000 10.73 14.20 0.00 3.85 F
1791 1795 1.947456 GGTACCGAGAATGGCATTTCC 59.053 52.381 14.93 8.28 0.00 3.13 F
2362 2366 2.320986 TCTCCATCCCCTAAAAGGAGGA 59.679 50.000 6.91 5.86 44.65 3.71 F
3437 3465 0.595095 GTTTGCTCTCAACTGGCCTG 59.405 55.000 8.29 8.29 30.75 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1248 1249 1.044611 GGGGAGATGCTGGACTAGTC 58.955 60.000 14.87 14.87 0.00 2.59 R
2101 2105 2.606213 TGACCCATCTCCACGCCA 60.606 61.111 0.00 0.00 0.00 5.69 R
3364 3392 0.965439 TGGAGCCAAACCAAATTCCG 59.035 50.000 0.00 0.00 34.25 4.30 R
3847 3876 1.793258 ATCATAGCAGACATCGCAGC 58.207 50.000 0.00 0.00 0.00 5.25 R
5382 5476 0.036732 AAGATGGCAGCGTGGAAGAA 59.963 50.000 0.00 0.00 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.152595 TGTATTAACATATTGCACTTGTTACGA 57.847 29.630 12.45 3.44 36.01 3.43
62 63 5.627367 TGCACTTGTTACGATAAATGTTTGC 59.373 36.000 0.00 0.00 0.00 3.68
104 105 5.105797 TGTTGTTGCTCTGAAGTGTCAAAAT 60.106 36.000 0.00 0.00 31.88 1.82
161 162 3.181434 TGTTAGGCCAGTTTGATGAACCT 60.181 43.478 5.01 0.00 39.13 3.50
162 163 4.042311 TGTTAGGCCAGTTTGATGAACCTA 59.958 41.667 5.01 0.00 39.13 3.08
163 164 5.193679 GTTAGGCCAGTTTGATGAACCTAT 58.806 41.667 5.01 0.00 39.13 2.57
224 225 0.108138 CAGGGTCTAAGCGGTTGAGG 60.108 60.000 10.73 0.35 0.00 3.86
226 227 0.108281 GGGTCTAAGCGGTTGAGGAC 60.108 60.000 10.73 14.20 0.00 3.85
341 342 7.602517 AATAAATAGACTGACACAGTTCAGC 57.397 36.000 5.88 6.13 45.44 4.26
505 506 5.831997 ACTGGATGTTTTACTTTGCTGTTC 58.168 37.500 0.00 0.00 0.00 3.18
551 552 3.872603 ACCCTTGCGAGCACACCA 61.873 61.111 0.00 0.00 0.00 4.17
630 631 4.616802 CACAAACGGATTGCACTATTGTTC 59.383 41.667 0.00 0.00 43.13 3.18
784 785 5.032846 TCTACAGAGATCAGGTGGGAAATT 58.967 41.667 0.00 0.00 0.00 1.82
840 841 7.651704 GCTGTTTGTTACCTTTTATGTGTGAAT 59.348 33.333 0.00 0.00 0.00 2.57
996 997 8.309163 TCCATTTTTGCTGTTTATTCAACATC 57.691 30.769 0.00 0.00 44.72 3.06
1248 1249 5.228635 GTGCAATACAATGAAATCTGCTTCG 59.771 40.000 0.00 0.00 0.00 3.79
1468 1469 9.669353 GCAGTGGTAATGATATATCAAACTTTG 57.331 33.333 19.03 16.91 40.69 2.77
1487 1488 9.705290 AAACTTTGAACAAGAAACTACACATTT 57.295 25.926 0.00 0.00 0.00 2.32
1659 1663 3.028850 CAATGAAGTGAATGGGGCAGAT 58.971 45.455 0.00 0.00 0.00 2.90
1730 1734 5.210715 CAATGAGAACTTCAACTCTGCAAC 58.789 41.667 0.00 0.00 39.77 4.17
1791 1795 1.947456 GGTACCGAGAATGGCATTTCC 59.053 52.381 14.93 8.28 0.00 3.13
2101 2105 5.829924 TCTCCAGAAAGAAAAGCACAATCTT 59.170 36.000 0.00 0.00 35.00 2.40
2163 2167 4.643142 CTGGAAGAAGAGATGGGTCACCA 61.643 52.174 0.00 0.00 45.59 4.17
2362 2366 2.320986 TCTCCATCCCCTAAAAGGAGGA 59.679 50.000 6.91 5.86 44.65 3.71
2451 2455 4.163078 CCATCTCCTAAAAGAAGAGCCTCA 59.837 45.833 0.00 0.00 0.00 3.86
2548 2552 5.046735 TCACCAAGAAAGAGAGATTCCTCAG 60.047 44.000 0.00 0.00 41.87 3.35
2758 2762 3.119531 GGAGCATGGTAGATCTCGATCAG 60.120 52.174 0.00 0.00 40.22 2.90
2869 2897 7.465353 TCTGAATTTGGATGAGCATGTTTTA 57.535 32.000 0.00 0.00 0.00 1.52
2870 2898 7.894708 TCTGAATTTGGATGAGCATGTTTTAA 58.105 30.769 0.00 0.00 0.00 1.52
2871 2899 8.366401 TCTGAATTTGGATGAGCATGTTTTAAA 58.634 29.630 0.00 0.00 0.00 1.52
2872 2900 8.309163 TGAATTTGGATGAGCATGTTTTAAAC 57.691 30.769 0.20 0.20 0.00 2.01
2873 2901 7.387397 TGAATTTGGATGAGCATGTTTTAAACC 59.613 33.333 5.32 0.00 0.00 3.27
2874 2902 5.798125 TTGGATGAGCATGTTTTAAACCA 57.202 34.783 5.32 0.00 0.00 3.67
2875 2903 5.798125 TGGATGAGCATGTTTTAAACCAA 57.202 34.783 5.32 0.00 0.00 3.67
2876 2904 5.537188 TGGATGAGCATGTTTTAAACCAAC 58.463 37.500 5.32 0.00 0.00 3.77
2877 2905 5.069648 TGGATGAGCATGTTTTAAACCAACA 59.930 36.000 5.32 0.00 38.49 3.33
2878 2906 5.634859 GGATGAGCATGTTTTAAACCAACAG 59.365 40.000 5.32 0.00 37.55 3.16
2879 2907 5.590530 TGAGCATGTTTTAAACCAACAGT 57.409 34.783 5.32 0.00 37.55 3.55
2880 2908 6.701145 TGAGCATGTTTTAAACCAACAGTA 57.299 33.333 5.32 0.00 37.55 2.74
2881 2909 6.500041 TGAGCATGTTTTAAACCAACAGTAC 58.500 36.000 5.32 0.00 37.55 2.73
2882 2910 5.838529 AGCATGTTTTAAACCAACAGTACC 58.161 37.500 5.32 0.00 37.55 3.34
2883 2911 5.361285 AGCATGTTTTAAACCAACAGTACCA 59.639 36.000 5.32 0.00 37.55 3.25
2884 2912 5.460748 GCATGTTTTAAACCAACAGTACCAC 59.539 40.000 5.32 0.00 37.55 4.16
2885 2913 6.565234 CATGTTTTAAACCAACAGTACCACA 58.435 36.000 5.32 0.00 37.55 4.17
2886 2914 6.777213 TGTTTTAAACCAACAGTACCACAT 57.223 33.333 5.32 0.00 30.49 3.21
2887 2915 6.565234 TGTTTTAAACCAACAGTACCACATG 58.435 36.000 5.32 0.00 30.49 3.21
2888 2916 6.153000 TGTTTTAAACCAACAGTACCACATGT 59.847 34.615 5.32 0.00 30.49 3.21
2889 2917 6.777213 TTTAAACCAACAGTACCACATGTT 57.223 33.333 0.00 0.00 40.18 2.71
2890 2918 6.777213 TTAAACCAACAGTACCACATGTTT 57.223 33.333 0.00 1.69 37.54 2.83
2891 2919 5.669164 AAACCAACAGTACCACATGTTTT 57.331 34.783 0.00 0.00 37.54 2.43
3437 3465 0.595095 GTTTGCTCTCAACTGGCCTG 59.405 55.000 8.29 8.29 30.75 4.85
3696 3724 6.434965 GGAGAGTACTTAGGATTCCATCTACC 59.565 46.154 5.29 0.00 0.00 3.18
3799 3828 7.032377 TCTACTATATTCGAGGCATGCTATG 57.968 40.000 18.92 7.44 0.00 2.23
3847 3876 8.170553 GCAAGAGCATAATTGGTAAATTTTGTG 58.829 33.333 0.00 0.00 37.18 3.33
3854 3883 3.932545 TGGTAAATTTTGTGCTGCGAT 57.067 38.095 0.00 0.00 0.00 4.58
3887 3916 8.613060 ATGATTGAACTATAAGCAATCGATGT 57.387 30.769 0.00 0.00 46.66 3.06
3901 3930 5.288472 GCAATCGATGTTGGTTGGATTTTAC 59.712 40.000 0.00 0.00 0.00 2.01
3958 3988 4.472833 AGAAAGCTAGATTGATGGGACTGT 59.527 41.667 0.00 0.00 0.00 3.55
4006 4037 6.078202 TGCGATTGAACTAAAATGGTCAAA 57.922 33.333 0.00 0.00 0.00 2.69
4085 4116 0.458716 GGCTGGCAGAGAACGTACTC 60.459 60.000 20.86 0.00 37.19 2.59
4223 4290 8.292444 TGCTAGATGTTAACCTAATTTGCAAT 57.708 30.769 0.00 0.00 0.00 3.56
4413 4484 1.187567 AAACAATGCTCTGGGTGGGC 61.188 55.000 0.00 0.00 0.00 5.36
4608 4683 3.888930 CCAAACCTTAGCTTGTTTCAGGA 59.111 43.478 0.00 0.00 32.60 3.86
4773 4852 1.464189 GGCGAAATTCAGACTTGCGAC 60.464 52.381 5.07 0.00 0.00 5.19
4799 4878 6.640907 GCTGTGTTGGTCATTTTTAAGTTAGG 59.359 38.462 0.00 0.00 0.00 2.69
4992 5078 0.882927 TGTCTGTTGCCAACGCCTAC 60.883 55.000 2.68 0.00 0.00 3.18
5010 5096 4.955811 CTACTTATGGTAGGTGGATGCA 57.044 45.455 0.00 0.00 42.97 3.96
5117 5211 1.202710 TGATACGTGCACAAACCCACT 60.203 47.619 18.64 0.00 0.00 4.00
5160 5254 2.097466 GGGTAGCGTTGATTTGACATGG 59.903 50.000 0.00 0.00 0.00 3.66
5166 5260 2.606795 CGTTGATTTGACATGGCGGTTT 60.607 45.455 0.00 0.00 0.00 3.27
5239 5333 4.955811 TGATCAACGCATATACTCCCTT 57.044 40.909 0.00 0.00 0.00 3.95
5243 5337 3.050619 CAACGCATATACTCCCTTCGTC 58.949 50.000 0.00 0.00 0.00 4.20
5244 5338 1.612463 ACGCATATACTCCCTTCGTCC 59.388 52.381 0.00 0.00 0.00 4.79
5245 5339 1.067776 CGCATATACTCCCTTCGTCCC 60.068 57.143 0.00 0.00 0.00 4.46
5246 5340 1.968493 GCATATACTCCCTTCGTCCCA 59.032 52.381 0.00 0.00 0.00 4.37
5247 5341 2.567615 GCATATACTCCCTTCGTCCCAT 59.432 50.000 0.00 0.00 0.00 4.00
5248 5342 3.767673 GCATATACTCCCTTCGTCCCATA 59.232 47.826 0.00 0.00 0.00 2.74
5249 5343 4.222145 GCATATACTCCCTTCGTCCCATAA 59.778 45.833 0.00 0.00 0.00 1.90
5250 5344 5.104900 GCATATACTCCCTTCGTCCCATAAT 60.105 44.000 0.00 0.00 0.00 1.28
5251 5345 6.097839 GCATATACTCCCTTCGTCCCATAATA 59.902 42.308 0.00 0.00 0.00 0.98
5252 5346 7.202011 GCATATACTCCCTTCGTCCCATAATAT 60.202 40.741 0.00 0.00 0.00 1.28
5253 5347 9.363401 CATATACTCCCTTCGTCCCATAATATA 57.637 37.037 0.00 0.00 0.00 0.86
5254 5348 9.947189 ATATACTCCCTTCGTCCCATAATATAA 57.053 33.333 0.00 0.00 0.00 0.98
5255 5349 6.607004 ACTCCCTTCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
5256 5350 6.320518 ACTCCCTTCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
5257 5351 6.437793 ACTCCCTTCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
5258 5352 6.320518 TCCCTTCGTCCCATAATATAAGAGT 58.679 40.000 0.00 0.00 0.00 3.24
5259 5353 6.210784 TCCCTTCGTCCCATAATATAAGAGTG 59.789 42.308 0.00 0.00 0.00 3.51
5260 5354 6.014499 CCCTTCGTCCCATAATATAAGAGTGT 60.014 42.308 0.00 0.00 0.00 3.55
5261 5355 7.442656 CCTTCGTCCCATAATATAAGAGTGTT 58.557 38.462 0.00 0.00 0.00 3.32
5262 5356 7.931948 CCTTCGTCCCATAATATAAGAGTGTTT 59.068 37.037 0.00 0.00 0.00 2.83
5263 5357 9.326413 CTTCGTCCCATAATATAAGAGTGTTTT 57.674 33.333 0.00 0.00 0.00 2.43
5264 5358 9.675464 TTCGTCCCATAATATAAGAGTGTTTTT 57.325 29.630 0.00 0.00 0.00 1.94
5290 5384 7.546250 ACTCACACTCTTATATTATGGGAGG 57.454 40.000 6.74 4.88 43.70 4.30
5291 5385 6.498651 ACTCACACTCTTATATTATGGGAGGG 59.501 42.308 6.74 7.82 43.70 4.30
5292 5386 6.630131 TCACACTCTTATATTATGGGAGGGA 58.370 40.000 13.34 6.21 32.45 4.20
5293 5387 6.726299 TCACACTCTTATATTATGGGAGGGAG 59.274 42.308 13.34 8.16 32.45 4.30
5294 5388 6.498651 CACACTCTTATATTATGGGAGGGAGT 59.501 42.308 13.34 0.00 32.45 3.85
5295 5389 7.674348 CACACTCTTATATTATGGGAGGGAGTA 59.326 40.741 13.34 0.00 32.45 2.59
5296 5390 7.896496 ACACTCTTATATTATGGGAGGGAGTAG 59.104 40.741 13.34 0.00 32.45 2.57
5297 5391 6.898521 ACTCTTATATTATGGGAGGGAGTAGC 59.101 42.308 0.00 0.00 31.08 3.58
5298 5392 6.811574 TCTTATATTATGGGAGGGAGTAGCA 58.188 40.000 0.00 0.00 0.00 3.49
5299 5393 6.897966 TCTTATATTATGGGAGGGAGTAGCAG 59.102 42.308 0.00 0.00 0.00 4.24
5300 5394 3.637821 ATTATGGGAGGGAGTAGCAGA 57.362 47.619 0.00 0.00 0.00 4.26
5301 5395 3.637821 TTATGGGAGGGAGTAGCAGAT 57.362 47.619 0.00 0.00 0.00 2.90
5332 5426 2.358003 AGCAGCGCCTGTGTTCTC 60.358 61.111 2.29 0.00 33.43 2.87
5367 5461 3.091545 CCAAGGAAAATAGAAGCAGCCA 58.908 45.455 0.00 0.00 0.00 4.75
5382 5476 1.205460 AGCCACCGTCCCTTATGGTT 61.205 55.000 0.00 0.00 45.91 3.67
5392 5486 1.743394 CCCTTATGGTTTCTTCCACGC 59.257 52.381 0.00 0.00 40.51 5.34
5393 5487 2.618045 CCCTTATGGTTTCTTCCACGCT 60.618 50.000 0.00 0.00 40.51 5.07
5394 5488 2.420022 CCTTATGGTTTCTTCCACGCTG 59.580 50.000 0.00 0.00 40.51 5.18
5395 5489 1.448985 TATGGTTTCTTCCACGCTGC 58.551 50.000 0.00 0.00 40.51 5.25
5396 5490 1.244019 ATGGTTTCTTCCACGCTGCC 61.244 55.000 0.00 0.00 40.51 4.85
5397 5491 1.896660 GGTTTCTTCCACGCTGCCA 60.897 57.895 0.00 0.00 0.00 4.92
5398 5492 1.244019 GGTTTCTTCCACGCTGCCAT 61.244 55.000 0.00 0.00 0.00 4.40
5399 5493 0.169009 GTTTCTTCCACGCTGCCATC 59.831 55.000 0.00 0.00 0.00 3.51
5400 5494 0.036732 TTTCTTCCACGCTGCCATCT 59.963 50.000 0.00 0.00 0.00 2.90
5401 5495 0.036732 TTCTTCCACGCTGCCATCTT 59.963 50.000 0.00 0.00 0.00 2.40
5402 5496 0.674581 TCTTCCACGCTGCCATCTTG 60.675 55.000 0.00 0.00 0.00 3.02
5403 5497 1.651240 CTTCCACGCTGCCATCTTGG 61.651 60.000 0.00 0.00 41.55 3.61
5404 5498 2.360350 CCACGCTGCCATCTTGGT 60.360 61.111 0.00 0.00 40.46 3.67
5405 5499 2.401766 CCACGCTGCCATCTTGGTC 61.402 63.158 0.00 0.00 40.46 4.02
5406 5500 2.045926 ACGCTGCCATCTTGGTCC 60.046 61.111 0.00 0.00 40.46 4.46
5407 5501 3.197790 CGCTGCCATCTTGGTCCG 61.198 66.667 0.00 0.00 40.46 4.79
5408 5502 3.512516 GCTGCCATCTTGGTCCGC 61.513 66.667 0.00 0.00 40.46 5.54
5409 5503 2.825836 CTGCCATCTTGGTCCGCC 60.826 66.667 0.00 0.00 40.46 6.13
5410 5504 3.329889 TGCCATCTTGGTCCGCCT 61.330 61.111 0.00 0.00 40.46 5.52
5411 5505 2.514824 GCCATCTTGGTCCGCCTC 60.515 66.667 0.00 0.00 40.46 4.70
5412 5506 2.190578 CCATCTTGGTCCGCCTCC 59.809 66.667 0.00 0.00 35.27 4.30
5413 5507 2.370445 CCATCTTGGTCCGCCTCCT 61.370 63.158 0.00 0.00 35.27 3.69
5414 5508 1.153289 CATCTTGGTCCGCCTCCTG 60.153 63.158 0.00 0.00 35.27 3.86
5415 5509 1.613630 ATCTTGGTCCGCCTCCTGT 60.614 57.895 0.00 0.00 35.27 4.00
5416 5510 1.617947 ATCTTGGTCCGCCTCCTGTC 61.618 60.000 0.00 0.00 35.27 3.51
5417 5511 2.203788 TTGGTCCGCCTCCTGTCT 60.204 61.111 0.00 0.00 35.27 3.41
5418 5512 1.831652 CTTGGTCCGCCTCCTGTCTT 61.832 60.000 0.00 0.00 35.27 3.01
5419 5513 1.415672 TTGGTCCGCCTCCTGTCTTT 61.416 55.000 0.00 0.00 35.27 2.52
5420 5514 1.375326 GGTCCGCCTCCTGTCTTTT 59.625 57.895 0.00 0.00 0.00 2.27
5421 5515 0.611714 GGTCCGCCTCCTGTCTTTTA 59.388 55.000 0.00 0.00 0.00 1.52
5422 5516 1.405661 GGTCCGCCTCCTGTCTTTTAG 60.406 57.143 0.00 0.00 0.00 1.85
5423 5517 0.902531 TCCGCCTCCTGTCTTTTAGG 59.097 55.000 0.00 0.00 36.63 2.69
5424 5518 0.107654 CCGCCTCCTGTCTTTTAGGG 60.108 60.000 0.00 0.00 35.96 3.53
5425 5519 0.744771 CGCCTCCTGTCTTTTAGGGC 60.745 60.000 0.00 0.00 35.96 5.19
5426 5520 0.328258 GCCTCCTGTCTTTTAGGGCA 59.672 55.000 0.00 0.00 35.96 5.36
5427 5521 1.064389 GCCTCCTGTCTTTTAGGGCAT 60.064 52.381 0.00 0.00 35.96 4.40
5428 5522 2.924421 CCTCCTGTCTTTTAGGGCATC 58.076 52.381 0.00 0.00 35.96 3.91
5429 5523 2.507471 CCTCCTGTCTTTTAGGGCATCT 59.493 50.000 0.00 0.00 35.96 2.90
5430 5524 3.432890 CCTCCTGTCTTTTAGGGCATCTC 60.433 52.174 0.00 0.00 35.96 2.75
5431 5525 2.505819 TCCTGTCTTTTAGGGCATCTCC 59.494 50.000 0.00 0.00 35.96 3.71
5432 5526 2.239654 CCTGTCTTTTAGGGCATCTCCA 59.760 50.000 0.00 0.00 36.21 3.86
5433 5527 3.539604 CTGTCTTTTAGGGCATCTCCAG 58.460 50.000 0.00 0.00 36.21 3.86
5434 5528 2.293170 GTCTTTTAGGGCATCTCCAGC 58.707 52.381 0.00 0.00 36.21 4.85
5451 5545 3.646715 CCGTTGGCTTCCTGGGGA 61.647 66.667 0.00 0.00 0.00 4.81
5452 5546 2.359975 CGTTGGCTTCCTGGGGAC 60.360 66.667 0.00 0.00 0.00 4.46
5453 5547 2.359975 GTTGGCTTCCTGGGGACG 60.360 66.667 0.00 0.00 0.00 4.79
5454 5548 4.344865 TTGGCTTCCTGGGGACGC 62.345 66.667 6.51 6.51 44.73 5.19
5457 5551 3.081409 GCTTCCTGGGGACGCCTA 61.081 66.667 10.28 0.00 40.47 3.93
5458 5552 2.666098 GCTTCCTGGGGACGCCTAA 61.666 63.158 10.28 1.32 40.47 2.69
5459 5553 1.988015 CTTCCTGGGGACGCCTAAA 59.012 57.895 10.28 1.02 0.00 1.85
5460 5554 0.326927 CTTCCTGGGGACGCCTAAAA 59.673 55.000 10.28 0.68 0.00 1.52
5461 5555 0.996583 TTCCTGGGGACGCCTAAAAT 59.003 50.000 10.28 0.00 0.00 1.82
5462 5556 0.544697 TCCTGGGGACGCCTAAAATC 59.455 55.000 10.28 0.00 0.00 2.17
5463 5557 0.814010 CCTGGGGACGCCTAAAATCG 60.814 60.000 10.28 0.00 0.00 3.34
5464 5558 1.436983 CTGGGGACGCCTAAAATCGC 61.437 60.000 10.28 0.00 0.00 4.58
5465 5559 2.184830 GGGGACGCCTAAAATCGCC 61.185 63.158 0.24 0.00 38.17 5.54
5466 5560 2.531376 GGGACGCCTAAAATCGCCG 61.531 63.158 0.00 0.00 0.00 6.46
5467 5561 2.323447 GACGCCTAAAATCGCCGC 59.677 61.111 0.00 0.00 0.00 6.53
5468 5562 2.125269 ACGCCTAAAATCGCCGCT 60.125 55.556 0.00 0.00 0.00 5.52
5469 5563 1.702491 GACGCCTAAAATCGCCGCTT 61.702 55.000 0.00 0.00 0.00 4.68
5470 5564 1.297598 CGCCTAAAATCGCCGCTTG 60.298 57.895 0.00 0.00 0.00 4.01
5471 5565 1.701545 CGCCTAAAATCGCCGCTTGA 61.702 55.000 0.00 0.00 0.00 3.02
5472 5566 0.450184 GCCTAAAATCGCCGCTTGAA 59.550 50.000 0.00 0.00 0.00 2.69
5473 5567 1.065551 GCCTAAAATCGCCGCTTGAAT 59.934 47.619 0.00 0.00 0.00 2.57
5474 5568 2.719798 CCTAAAATCGCCGCTTGAATG 58.280 47.619 0.00 0.00 0.00 2.67
5475 5569 2.097466 CCTAAAATCGCCGCTTGAATGT 59.903 45.455 0.00 0.00 0.00 2.71
5476 5570 1.981254 AAAATCGCCGCTTGAATGTG 58.019 45.000 0.00 0.00 0.00 3.21
5477 5571 1.164411 AAATCGCCGCTTGAATGTGA 58.836 45.000 0.00 0.00 0.00 3.58
5478 5572 0.729116 AATCGCCGCTTGAATGTGAG 59.271 50.000 0.00 0.00 0.00 3.51
5479 5573 1.709147 ATCGCCGCTTGAATGTGAGC 61.709 55.000 0.00 0.00 35.58 4.26
5480 5574 2.486966 GCCGCTTGAATGTGAGCC 59.513 61.111 0.00 0.00 35.49 4.70
5481 5575 2.787249 CCGCTTGAATGTGAGCCG 59.213 61.111 0.00 0.00 35.49 5.52
5482 5576 1.741401 CCGCTTGAATGTGAGCCGA 60.741 57.895 0.00 0.00 35.49 5.54
5483 5577 1.421485 CGCTTGAATGTGAGCCGAC 59.579 57.895 0.00 0.00 35.49 4.79
5484 5578 1.421485 GCTTGAATGTGAGCCGACG 59.579 57.895 0.00 0.00 32.80 5.12
5485 5579 1.421485 CTTGAATGTGAGCCGACGC 59.579 57.895 0.00 0.00 0.00 5.19
5486 5580 1.291184 CTTGAATGTGAGCCGACGCA 61.291 55.000 0.00 0.00 37.52 5.24
5487 5581 0.882484 TTGAATGTGAGCCGACGCAA 60.882 50.000 0.00 0.00 37.52 4.85
5488 5582 0.882484 TGAATGTGAGCCGACGCAAA 60.882 50.000 0.00 0.00 37.52 3.68
5489 5583 0.237235 GAATGTGAGCCGACGCAAAA 59.763 50.000 0.00 0.00 37.52 2.44
5490 5584 0.665835 AATGTGAGCCGACGCAAAAA 59.334 45.000 0.00 0.00 37.52 1.94
5491 5585 0.881118 ATGTGAGCCGACGCAAAAAT 59.119 45.000 0.00 0.00 37.52 1.82
5492 5586 0.665835 TGTGAGCCGACGCAAAAATT 59.334 45.000 0.00 0.00 37.52 1.82
5493 5587 1.874231 TGTGAGCCGACGCAAAAATTA 59.126 42.857 0.00 0.00 37.52 1.40
5494 5588 2.290916 TGTGAGCCGACGCAAAAATTAA 59.709 40.909 0.00 0.00 37.52 1.40
5495 5589 2.908626 GTGAGCCGACGCAAAAATTAAG 59.091 45.455 0.00 0.00 37.52 1.85
5496 5590 1.911464 GAGCCGACGCAAAAATTAAGC 59.089 47.619 0.00 0.00 37.52 3.09
5497 5591 0.989164 GCCGACGCAAAAATTAAGCC 59.011 50.000 0.00 0.00 34.03 4.35
5498 5592 1.402325 GCCGACGCAAAAATTAAGCCT 60.402 47.619 0.00 0.00 34.03 4.58
5499 5593 2.250188 CCGACGCAAAAATTAAGCCTG 58.750 47.619 0.00 0.00 0.00 4.85
5500 5594 2.250188 CGACGCAAAAATTAAGCCTGG 58.750 47.619 0.00 0.00 0.00 4.45
5501 5595 2.606108 GACGCAAAAATTAAGCCTGGG 58.394 47.619 0.00 0.00 0.00 4.45
5502 5596 1.275010 ACGCAAAAATTAAGCCTGGGG 59.725 47.619 0.00 0.00 0.00 4.96
5503 5597 1.405391 CGCAAAAATTAAGCCTGGGGG 60.405 52.381 0.00 0.00 0.00 5.40
5513 5607 4.410400 CCTGGGGGCGAGTTGGTC 62.410 72.222 0.00 0.00 0.00 4.02
5514 5608 4.410400 CTGGGGGCGAGTTGGTCC 62.410 72.222 0.00 0.00 0.00 4.46
5518 5612 4.410400 GGGCGAGTTGGTCCCCAG 62.410 72.222 0.00 0.00 36.26 4.45
5521 5615 4.760047 CGAGTTGGTCCCCAGCCG 62.760 72.222 0.00 0.00 35.27 5.52
5554 5648 4.504112 CCCCCAGGCACGTTTTAA 57.496 55.556 0.00 0.00 0.00 1.52
5555 5649 2.734893 CCCCCAGGCACGTTTTAAA 58.265 52.632 0.00 0.00 0.00 1.52
5556 5650 1.041437 CCCCCAGGCACGTTTTAAAA 58.959 50.000 0.00 0.00 0.00 1.52
5557 5651 1.621317 CCCCCAGGCACGTTTTAAAAT 59.379 47.619 3.52 0.00 0.00 1.82
5558 5652 2.826725 CCCCCAGGCACGTTTTAAAATA 59.173 45.455 3.52 0.00 0.00 1.40
5559 5653 3.258622 CCCCCAGGCACGTTTTAAAATAA 59.741 43.478 3.52 0.00 0.00 1.40
5560 5654 4.262506 CCCCCAGGCACGTTTTAAAATAAA 60.263 41.667 3.52 0.00 0.00 1.40
5561 5655 5.298347 CCCCAGGCACGTTTTAAAATAAAA 58.702 37.500 3.52 0.00 0.00 1.52
5562 5656 5.407084 CCCCAGGCACGTTTTAAAATAAAAG 59.593 40.000 3.52 0.00 0.00 2.27
5563 5657 6.217294 CCCAGGCACGTTTTAAAATAAAAGA 58.783 36.000 3.52 0.00 0.00 2.52
5564 5658 6.702282 CCCAGGCACGTTTTAAAATAAAAGAA 59.298 34.615 3.52 0.00 0.00 2.52
5565 5659 7.095816 CCCAGGCACGTTTTAAAATAAAAGAAG 60.096 37.037 3.52 0.00 0.00 2.85
5566 5660 7.436970 CCAGGCACGTTTTAAAATAAAAGAAGT 59.563 33.333 3.52 0.00 0.00 3.01
5567 5661 8.813282 CAGGCACGTTTTAAAATAAAAGAAGTT 58.187 29.630 3.52 0.00 0.00 2.66
5568 5662 9.027129 AGGCACGTTTTAAAATAAAAGAAGTTC 57.973 29.630 3.52 0.00 0.00 3.01
5569 5663 7.994343 GGCACGTTTTAAAATAAAAGAAGTTCG 59.006 33.333 3.52 1.24 0.00 3.95
5570 5664 7.994343 GCACGTTTTAAAATAAAAGAAGTTCGG 59.006 33.333 3.52 0.00 0.00 4.30
5571 5665 7.994343 CACGTTTTAAAATAAAAGAAGTTCGGC 59.006 33.333 3.52 0.00 0.00 5.54
5572 5666 7.096925 ACGTTTTAAAATAAAAGAAGTTCGGCG 60.097 33.333 0.00 0.00 0.00 6.46
5573 5667 7.111870 CGTTTTAAAATAAAAGAAGTTCGGCGA 59.888 33.333 4.99 4.99 0.00 5.54
5574 5668 8.744923 GTTTTAAAATAAAAGAAGTTCGGCGAA 58.255 29.630 19.83 19.83 0.00 4.70
5575 5669 8.496872 TTTAAAATAAAAGAAGTTCGGCGAAG 57.503 30.769 24.41 0.00 0.00 3.79
5576 5670 5.684550 AAATAAAAGAAGTTCGGCGAAGT 57.315 34.783 24.41 23.86 0.00 3.01
5577 5671 5.684550 AATAAAAGAAGTTCGGCGAAGTT 57.315 34.783 35.18 35.18 37.82 2.66
5578 5672 3.604065 AAAAGAAGTTCGGCGAAGTTC 57.396 42.857 41.81 41.81 46.41 3.01
5580 5674 2.514267 GAAGTTCGGCGAAGTTCGT 58.486 52.632 38.68 22.88 40.55 3.85
5581 5675 0.161024 GAAGTTCGGCGAAGTTCGTG 59.839 55.000 38.68 17.94 40.55 4.35
5582 5676 1.828331 AAGTTCGGCGAAGTTCGTGC 61.828 55.000 31.04 15.14 42.81 5.34
5583 5677 2.028484 TTCGGCGAAGTTCGTGCT 59.972 55.556 25.04 0.00 42.81 4.40
5584 5678 1.593209 TTCGGCGAAGTTCGTGCTT 60.593 52.632 25.04 0.00 42.81 3.91
5585 5679 1.554042 TTCGGCGAAGTTCGTGCTTC 61.554 55.000 25.04 8.99 42.81 3.86
5586 5680 2.861006 GGCGAAGTTCGTGCTTCC 59.139 61.111 25.04 14.12 42.81 3.46
5587 5681 2.677979 GGCGAAGTTCGTGCTTCCC 61.678 63.158 25.04 13.43 42.81 3.97
5588 5682 1.959226 GCGAAGTTCGTGCTTCCCA 60.959 57.895 25.04 0.00 42.81 4.37
5589 5683 1.901650 GCGAAGTTCGTGCTTCCCAG 61.902 60.000 25.04 0.00 42.81 4.45
5590 5684 1.291877 CGAAGTTCGTGCTTCCCAGG 61.292 60.000 17.16 0.00 41.18 4.45
5591 5685 0.955919 GAAGTTCGTGCTTCCCAGGG 60.956 60.000 0.00 0.00 39.03 4.45
5592 5686 3.056328 GTTCGTGCTTCCCAGGGC 61.056 66.667 0.00 0.00 0.00 5.19
5593 5687 3.249189 TTCGTGCTTCCCAGGGCT 61.249 61.111 0.00 0.00 0.00 5.19
5594 5688 3.551496 TTCGTGCTTCCCAGGGCTG 62.551 63.158 0.00 0.00 0.00 4.85
5612 5706 4.504112 CCCCCAGGCACGTTTTAA 57.496 55.556 0.00 0.00 0.00 1.52
5613 5707 2.734893 CCCCCAGGCACGTTTTAAA 58.265 52.632 0.00 0.00 0.00 1.52
5614 5708 1.041437 CCCCCAGGCACGTTTTAAAA 58.959 50.000 0.00 0.00 0.00 1.52
5615 5709 1.621317 CCCCCAGGCACGTTTTAAAAT 59.379 47.619 3.52 0.00 0.00 1.82
5616 5710 2.826725 CCCCCAGGCACGTTTTAAAATA 59.173 45.455 3.52 0.00 0.00 1.40
5617 5711 3.258622 CCCCCAGGCACGTTTTAAAATAA 59.741 43.478 3.52 0.00 0.00 1.40
5618 5712 4.262506 CCCCCAGGCACGTTTTAAAATAAA 60.263 41.667 3.52 0.00 0.00 1.40
5619 5713 5.298347 CCCCAGGCACGTTTTAAAATAAAA 58.702 37.500 3.52 0.00 0.00 1.52
5620 5714 5.407084 CCCCAGGCACGTTTTAAAATAAAAG 59.593 40.000 3.52 0.00 0.00 2.27
5621 5715 6.217294 CCCAGGCACGTTTTAAAATAAAAGA 58.783 36.000 3.52 0.00 0.00 2.52
5622 5716 6.702282 CCCAGGCACGTTTTAAAATAAAAGAA 59.298 34.615 3.52 0.00 0.00 2.52
5623 5717 7.095816 CCCAGGCACGTTTTAAAATAAAAGAAG 60.096 37.037 3.52 0.00 0.00 2.85
5624 5718 7.436970 CCAGGCACGTTTTAAAATAAAAGAAGT 59.563 33.333 3.52 0.00 0.00 3.01
5625 5719 8.813282 CAGGCACGTTTTAAAATAAAAGAAGTT 58.187 29.630 3.52 0.00 0.00 2.66
5626 5720 9.027129 AGGCACGTTTTAAAATAAAAGAAGTTC 57.973 29.630 3.52 0.00 0.00 3.01
5627 5721 7.994343 GGCACGTTTTAAAATAAAAGAAGTTCG 59.006 33.333 3.52 1.24 0.00 3.95
5628 5722 7.994343 GCACGTTTTAAAATAAAAGAAGTTCGG 59.006 33.333 3.52 0.00 0.00 4.30
5629 5723 7.994343 CACGTTTTAAAATAAAAGAAGTTCGGC 59.006 33.333 3.52 0.00 0.00 5.54
5630 5724 7.096925 ACGTTTTAAAATAAAAGAAGTTCGGCG 60.097 33.333 0.00 0.00 0.00 6.46
5631 5725 7.111870 CGTTTTAAAATAAAAGAAGTTCGGCGA 59.888 33.333 4.99 4.99 0.00 5.54
5632 5726 8.744923 GTTTTAAAATAAAAGAAGTTCGGCGAA 58.255 29.630 19.83 19.83 0.00 4.70
5633 5727 8.496872 TTTAAAATAAAAGAAGTTCGGCGAAG 57.503 30.769 24.41 0.00 0.00 3.79
5634 5728 5.684550 AAATAAAAGAAGTTCGGCGAAGT 57.315 34.783 24.41 23.86 0.00 3.01
5635 5729 5.684550 AATAAAAGAAGTTCGGCGAAGTT 57.315 34.783 35.18 35.18 37.82 2.66
5636 5730 3.604065 AAAAGAAGTTCGGCGAAGTTC 57.396 42.857 41.81 41.81 46.41 3.01
5638 5732 1.779683 GAAGTTCGGCGAAGTTCGG 59.220 57.895 38.68 10.95 40.55 4.30
5646 5740 2.159181 GCGAAGTTCGGCTTAAGCA 58.841 52.632 27.83 6.59 44.36 3.91
5647 5741 0.179222 GCGAAGTTCGGCTTAAGCAC 60.179 55.000 27.83 17.60 44.36 4.40
5648 5742 0.093026 CGAAGTTCGGCTTAAGCACG 59.907 55.000 27.83 25.55 44.36 5.34
5649 5743 1.425412 GAAGTTCGGCTTAAGCACGA 58.575 50.000 27.83 27.13 44.36 4.35
5650 5744 2.000447 GAAGTTCGGCTTAAGCACGAT 59.000 47.619 29.07 20.05 44.36 3.73
5651 5745 1.359848 AGTTCGGCTTAAGCACGATG 58.640 50.000 29.07 15.49 44.36 3.84
5652 5746 1.067142 AGTTCGGCTTAAGCACGATGA 60.067 47.619 29.07 18.82 44.36 2.92
5653 5747 1.730064 GTTCGGCTTAAGCACGATGAA 59.270 47.619 29.07 20.55 44.36 2.57
5654 5748 2.087501 TCGGCTTAAGCACGATGAAA 57.912 45.000 27.83 10.34 44.36 2.69
5655 5749 2.627945 TCGGCTTAAGCACGATGAAAT 58.372 42.857 27.83 0.00 44.36 2.17
5656 5750 3.006940 TCGGCTTAAGCACGATGAAATT 58.993 40.909 27.83 0.00 44.36 1.82
5657 5751 3.063452 TCGGCTTAAGCACGATGAAATTC 59.937 43.478 27.83 5.89 44.36 2.17
5658 5752 3.354397 GGCTTAAGCACGATGAAATTCG 58.646 45.455 27.83 0.00 44.36 3.34
5659 5753 3.354397 GCTTAAGCACGATGAAATTCGG 58.646 45.455 22.59 0.00 43.33 4.30
5660 5754 3.354397 CTTAAGCACGATGAAATTCGGC 58.646 45.455 0.00 0.00 43.33 5.54
5661 5755 0.451783 AAGCACGATGAAATTCGGCC 59.548 50.000 0.00 0.00 43.33 6.13
5662 5756 0.676466 AGCACGATGAAATTCGGCCA 60.676 50.000 2.24 0.00 43.33 5.36
5663 5757 0.170116 GCACGATGAAATTCGGCCAA 59.830 50.000 2.24 0.00 43.33 4.52
5664 5758 1.402194 GCACGATGAAATTCGGCCAAA 60.402 47.619 2.24 0.00 43.33 3.28
5665 5759 2.735126 GCACGATGAAATTCGGCCAAAT 60.735 45.455 2.24 0.00 43.33 2.32
5666 5760 3.488384 GCACGATGAAATTCGGCCAAATA 60.488 43.478 2.24 0.00 43.33 1.40
5667 5761 4.035017 CACGATGAAATTCGGCCAAATAC 58.965 43.478 2.24 0.00 43.33 1.89
5668 5762 3.242608 ACGATGAAATTCGGCCAAATACG 60.243 43.478 2.24 1.25 43.33 3.06
5669 5763 3.001838 CGATGAAATTCGGCCAAATACGA 59.998 43.478 2.24 0.00 35.50 3.43
5670 5764 4.319477 CGATGAAATTCGGCCAAATACGAT 60.319 41.667 2.24 0.00 39.06 3.73
5671 5765 5.107259 CGATGAAATTCGGCCAAATACGATA 60.107 40.000 2.24 0.00 39.06 2.92
5672 5766 6.565060 CGATGAAATTCGGCCAAATACGATAA 60.565 38.462 2.24 0.00 39.06 1.75
5673 5767 6.438259 TGAAATTCGGCCAAATACGATAAA 57.562 33.333 2.24 0.00 39.06 1.40
5674 5768 7.033530 TGAAATTCGGCCAAATACGATAAAT 57.966 32.000 2.24 0.00 39.06 1.40
5675 5769 7.484975 TGAAATTCGGCCAAATACGATAAATT 58.515 30.769 2.24 0.00 39.06 1.82
5676 5770 7.976734 TGAAATTCGGCCAAATACGATAAATTT 59.023 29.630 2.24 0.00 39.06 1.82
5677 5771 8.710835 AAATTCGGCCAAATACGATAAATTTT 57.289 26.923 2.24 0.00 39.06 1.82
5678 5772 7.692908 ATTCGGCCAAATACGATAAATTTTG 57.307 32.000 2.24 0.00 39.06 2.44
5679 5773 5.583495 TCGGCCAAATACGATAAATTTTGG 58.417 37.500 2.24 8.54 46.97 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.665190 ACAGCTCTTACTACAAGGCAAC 58.335 45.455 0.00 0.00 0.00 4.17
62 63 4.362279 CAACATGTTCCCAAGTTGTTGAG 58.638 43.478 8.48 0.00 46.23 3.02
73 74 2.229792 TCAGAGCAACAACATGTTCCC 58.770 47.619 8.48 0.00 38.77 3.97
125 126 3.219281 GCCTAACACAAGAAAAGGACCA 58.781 45.455 0.00 0.00 0.00 4.02
291 292 5.398416 GCTAATCAGAACCAAACAAACGAAC 59.602 40.000 0.00 0.00 0.00 3.95
341 342 5.584649 TCTTAAGGACAAGGCATTCGTAATG 59.415 40.000 1.85 3.98 41.85 1.90
505 506 5.437289 TGAAGCATAAAAGACAACACTGG 57.563 39.130 0.00 0.00 0.00 4.00
551 552 7.277396 CAGGAAATGCAATAAAATGGAAGGAT 58.723 34.615 0.00 0.00 0.00 3.24
662 663 6.262944 AGAACTGAAACAATCACAGCATTACA 59.737 34.615 0.00 0.00 35.38 2.41
784 785 1.100463 TCAAAGCAGCAAAGTCGCCA 61.100 50.000 0.00 0.00 0.00 5.69
853 854 8.682710 TGATAAAACCCTAAATTAGCATGACAC 58.317 33.333 0.00 0.00 0.00 3.67
925 926 9.377312 AGAGAGAATTTTATAACAGAGAACTGC 57.623 33.333 0.00 0.00 46.95 4.40
996 997 4.784838 TCAGGGGATATGTAATCCATCTGG 59.215 45.833 18.25 0.00 39.38 3.86
1248 1249 1.044611 GGGGAGATGCTGGACTAGTC 58.955 60.000 14.87 14.87 0.00 2.59
1468 1469 7.096065 GGCATCAAAATGTGTAGTTTCTTGTTC 60.096 37.037 0.00 0.00 35.18 3.18
1487 1488 3.776969 AGAGTCACCAAGATAGGCATCAA 59.223 43.478 0.00 0.00 33.21 2.57
1654 1658 5.920840 CACCATTCATTTGATCATCATCTGC 59.079 40.000 0.00 0.00 0.00 4.26
1659 1663 4.869451 TCCCACCATTCATTTGATCATCA 58.131 39.130 0.00 0.00 0.00 3.07
2101 2105 2.606213 TGACCCATCTCCACGCCA 60.606 61.111 0.00 0.00 0.00 5.69
2362 2366 3.185299 TTCGCCGTGGTGACCCATT 62.185 57.895 0.00 0.00 44.35 3.16
2548 2552 1.534203 GGGAATCCCTCCTCCTTGC 59.466 63.158 11.95 0.00 44.68 4.01
2758 2762 2.233305 TTCCTAGAGTGTGGAGACCC 57.767 55.000 0.00 0.00 33.46 4.46
2869 2897 5.420739 AGAAAACATGTGGTACTGTTGGTTT 59.579 36.000 0.00 1.33 35.82 3.27
2870 2898 4.953579 AGAAAACATGTGGTACTGTTGGTT 59.046 37.500 0.00 0.00 35.82 3.67
2871 2899 4.338118 CAGAAAACATGTGGTACTGTTGGT 59.662 41.667 0.00 0.00 35.82 3.67
2872 2900 4.578516 TCAGAAAACATGTGGTACTGTTGG 59.421 41.667 0.00 0.00 35.82 3.77
2873 2901 5.296780 AGTCAGAAAACATGTGGTACTGTTG 59.703 40.000 0.00 0.00 35.82 3.33
2874 2902 5.437060 AGTCAGAAAACATGTGGTACTGTT 58.563 37.500 0.00 0.00 37.19 3.16
2875 2903 5.036117 AGTCAGAAAACATGTGGTACTGT 57.964 39.130 0.00 0.00 31.69 3.55
2876 2904 5.178252 CAGAGTCAGAAAACATGTGGTACTG 59.822 44.000 0.00 7.60 0.00 2.74
2877 2905 5.300752 CAGAGTCAGAAAACATGTGGTACT 58.699 41.667 0.00 0.00 0.00 2.73
2878 2906 4.083802 GCAGAGTCAGAAAACATGTGGTAC 60.084 45.833 0.00 0.00 0.00 3.34
2879 2907 4.065088 GCAGAGTCAGAAAACATGTGGTA 58.935 43.478 0.00 0.00 0.00 3.25
2880 2908 2.880890 GCAGAGTCAGAAAACATGTGGT 59.119 45.455 0.00 0.00 0.00 4.16
2881 2909 2.880268 TGCAGAGTCAGAAAACATGTGG 59.120 45.455 0.00 0.00 0.00 4.17
2882 2910 4.036027 AGTTGCAGAGTCAGAAAACATGTG 59.964 41.667 0.00 0.00 0.00 3.21
2883 2911 4.202441 AGTTGCAGAGTCAGAAAACATGT 58.798 39.130 0.00 0.00 0.00 3.21
2884 2912 4.825546 AGTTGCAGAGTCAGAAAACATG 57.174 40.909 0.00 0.00 0.00 3.21
2885 2913 5.841957 AAAGTTGCAGAGTCAGAAAACAT 57.158 34.783 0.00 0.00 0.00 2.71
2886 2914 6.374333 ACTTAAAGTTGCAGAGTCAGAAAACA 59.626 34.615 0.00 0.00 0.00 2.83
2887 2915 6.786207 ACTTAAAGTTGCAGAGTCAGAAAAC 58.214 36.000 0.00 0.00 0.00 2.43
2888 2916 7.985184 TCTACTTAAAGTTGCAGAGTCAGAAAA 59.015 33.333 0.00 0.00 0.00 2.29
2889 2917 7.497595 TCTACTTAAAGTTGCAGAGTCAGAAA 58.502 34.615 0.00 0.00 0.00 2.52
2890 2918 7.050970 TCTACTTAAAGTTGCAGAGTCAGAA 57.949 36.000 0.00 0.00 0.00 3.02
2891 2919 6.650427 TCTACTTAAAGTTGCAGAGTCAGA 57.350 37.500 0.00 0.00 0.00 3.27
3099 3127 0.983378 AGATTCCGCCCAGGCTTACT 60.983 55.000 7.17 0.00 40.77 2.24
3364 3392 0.965439 TGGAGCCAAACCAAATTCCG 59.035 50.000 0.00 0.00 34.25 4.30
3696 3724 8.496872 AAATACAACCTTATTTTCAAACGACG 57.503 30.769 0.00 0.00 28.99 5.12
3799 3828 6.728200 TGCAAGCTGAAATATAAGTGTATGC 58.272 36.000 0.00 0.00 0.00 3.14
3847 3876 1.793258 ATCATAGCAGACATCGCAGC 58.207 50.000 0.00 0.00 0.00 5.25
3854 3883 7.500141 TGCTTATAGTTCAATCATAGCAGACA 58.500 34.615 0.00 0.00 0.00 3.41
3887 3916 4.443598 GCAAACCAGGTAAAATCCAACCAA 60.444 41.667 0.00 0.00 38.30 3.67
3901 3930 2.891191 TAGTAAAGGGGCAAACCAGG 57.109 50.000 0.00 0.00 42.91 4.45
4041 4072 9.731819 CCTCATCATCAATTCAATTTCAACTAG 57.268 33.333 0.00 0.00 0.00 2.57
4188 4230 6.879458 AGGTTAACATCTAGCAAACCTACTTG 59.121 38.462 8.10 0.00 46.19 3.16
4223 4290 7.667557 TCGAGAATCTCCAGTTCTAAGAAAAA 58.332 34.615 4.47 0.00 36.13 1.94
4413 4484 2.908073 GCTGTGCAAACTGGTCCCG 61.908 63.158 0.00 0.00 0.00 5.14
4608 4683 1.211457 CCTCTTTATCAGCAGCAGGGT 59.789 52.381 0.00 0.00 0.00 4.34
4773 4852 4.606961 ACTTAAAAATGACCAACACAGCG 58.393 39.130 0.00 0.00 0.00 5.18
4826 4905 3.380479 TCCACGACCTAAAACACAGAG 57.620 47.619 0.00 0.00 0.00 3.35
4868 4947 3.260884 AGACAGCAGAAAAGTTATCGGGA 59.739 43.478 0.00 0.00 0.00 5.14
4992 5078 3.117888 ACCTTGCATCCACCTACCATAAG 60.118 47.826 0.00 0.00 0.00 1.73
5007 5093 1.228094 TCGGCATGACAACCTTGCA 60.228 52.632 0.00 0.00 44.88 4.08
5117 5211 4.706476 CCAATCTCCATCAACCAGCTAAAA 59.294 41.667 0.00 0.00 0.00 1.52
5160 5254 2.427506 AGTCTCCAAGAATGAAACCGC 58.572 47.619 0.00 0.00 0.00 5.68
5166 5260 8.553459 GAGAAATTGTTAGTCTCCAAGAATGA 57.447 34.615 0.00 0.00 33.16 2.57
5264 5358 9.090103 CCTCCCATAATATAAGAGTGTGAGTAA 57.910 37.037 0.00 0.00 0.00 2.24
5265 5359 7.674348 CCCTCCCATAATATAAGAGTGTGAGTA 59.326 40.741 0.00 0.00 0.00 2.59
5266 5360 6.498651 CCCTCCCATAATATAAGAGTGTGAGT 59.501 42.308 0.00 0.00 0.00 3.41
5267 5361 6.726299 TCCCTCCCATAATATAAGAGTGTGAG 59.274 42.308 0.00 0.00 0.00 3.51
5268 5362 6.630131 TCCCTCCCATAATATAAGAGTGTGA 58.370 40.000 0.00 0.00 0.00 3.58
5269 5363 6.498651 ACTCCCTCCCATAATATAAGAGTGTG 59.501 42.308 0.00 0.00 31.21 3.82
5270 5364 6.635021 ACTCCCTCCCATAATATAAGAGTGT 58.365 40.000 0.00 0.00 31.21 3.55
5271 5365 7.147811 GCTACTCCCTCCCATAATATAAGAGTG 60.148 44.444 0.00 0.00 34.19 3.51
5272 5366 6.898521 GCTACTCCCTCCCATAATATAAGAGT 59.101 42.308 0.00 0.00 36.18 3.24
5273 5367 6.897966 TGCTACTCCCTCCCATAATATAAGAG 59.102 42.308 0.00 0.00 0.00 2.85
5274 5368 6.811574 TGCTACTCCCTCCCATAATATAAGA 58.188 40.000 0.00 0.00 0.00 2.10
5275 5369 6.897966 TCTGCTACTCCCTCCCATAATATAAG 59.102 42.308 0.00 0.00 0.00 1.73
5276 5370 6.811574 TCTGCTACTCCCTCCCATAATATAA 58.188 40.000 0.00 0.00 0.00 0.98
5277 5371 6.417503 TCTGCTACTCCCTCCCATAATATA 57.582 41.667 0.00 0.00 0.00 0.86
5278 5372 5.291100 TCTGCTACTCCCTCCCATAATAT 57.709 43.478 0.00 0.00 0.00 1.28
5279 5373 4.759793 TCTGCTACTCCCTCCCATAATA 57.240 45.455 0.00 0.00 0.00 0.98
5280 5374 3.637821 TCTGCTACTCCCTCCCATAAT 57.362 47.619 0.00 0.00 0.00 1.28
5281 5375 3.637821 ATCTGCTACTCCCTCCCATAA 57.362 47.619 0.00 0.00 0.00 1.90
5282 5376 3.401342 TGTATCTGCTACTCCCTCCCATA 59.599 47.826 0.00 0.00 0.00 2.74
5283 5377 2.180086 TGTATCTGCTACTCCCTCCCAT 59.820 50.000 0.00 0.00 0.00 4.00
5284 5378 1.573857 TGTATCTGCTACTCCCTCCCA 59.426 52.381 0.00 0.00 0.00 4.37
5285 5379 1.964933 GTGTATCTGCTACTCCCTCCC 59.035 57.143 0.00 0.00 0.00 4.30
5286 5380 2.667470 TGTGTATCTGCTACTCCCTCC 58.333 52.381 0.00 0.00 0.00 4.30
5287 5381 4.082463 GCTATGTGTATCTGCTACTCCCTC 60.082 50.000 0.00 0.00 0.00 4.30
5288 5382 3.829601 GCTATGTGTATCTGCTACTCCCT 59.170 47.826 0.00 0.00 0.00 4.20
5289 5383 3.056465 GGCTATGTGTATCTGCTACTCCC 60.056 52.174 0.00 0.00 0.00 4.30
5290 5384 3.574396 TGGCTATGTGTATCTGCTACTCC 59.426 47.826 0.00 0.00 0.00 3.85
5291 5385 4.804108 CTGGCTATGTGTATCTGCTACTC 58.196 47.826 0.00 0.00 0.00 2.59
5292 5386 3.006323 GCTGGCTATGTGTATCTGCTACT 59.994 47.826 0.00 0.00 0.00 2.57
5293 5387 3.243873 TGCTGGCTATGTGTATCTGCTAC 60.244 47.826 0.00 0.00 0.00 3.58
5294 5388 2.965147 TGCTGGCTATGTGTATCTGCTA 59.035 45.455 0.00 0.00 0.00 3.49
5295 5389 1.764723 TGCTGGCTATGTGTATCTGCT 59.235 47.619 0.00 0.00 0.00 4.24
5296 5390 2.141517 CTGCTGGCTATGTGTATCTGC 58.858 52.381 0.00 0.00 0.00 4.26
5297 5391 2.141517 GCTGCTGGCTATGTGTATCTG 58.858 52.381 0.00 0.00 38.06 2.90
5298 5392 1.764723 TGCTGCTGGCTATGTGTATCT 59.235 47.619 0.00 0.00 42.39 1.98
5299 5393 2.141517 CTGCTGCTGGCTATGTGTATC 58.858 52.381 0.00 0.00 42.39 2.24
5300 5394 1.813092 GCTGCTGCTGGCTATGTGTAT 60.813 52.381 8.53 0.00 42.39 2.29
5301 5395 0.462581 GCTGCTGCTGGCTATGTGTA 60.463 55.000 8.53 0.00 42.39 2.90
5367 5461 2.026542 GGAAGAAACCATAAGGGACGGT 60.027 50.000 0.00 0.00 41.15 4.83
5382 5476 0.036732 AAGATGGCAGCGTGGAAGAA 59.963 50.000 0.00 0.00 0.00 2.52
5392 5486 2.825836 GGCGGACCAAGATGGCAG 60.826 66.667 0.00 0.00 42.67 4.85
5393 5487 3.329542 GAGGCGGACCAAGATGGCA 62.330 63.158 0.00 0.00 42.67 4.92
5394 5488 2.514824 GAGGCGGACCAAGATGGC 60.515 66.667 0.00 0.00 42.67 4.40
5395 5489 2.190578 GGAGGCGGACCAAGATGG 59.809 66.667 0.00 0.00 45.02 3.51
5396 5490 1.153289 CAGGAGGCGGACCAAGATG 60.153 63.158 0.00 0.00 39.06 2.90
5397 5491 1.613630 ACAGGAGGCGGACCAAGAT 60.614 57.895 0.00 0.00 39.06 2.40
5398 5492 2.203788 ACAGGAGGCGGACCAAGA 60.204 61.111 0.00 0.00 39.06 3.02
5399 5493 1.831652 AAGACAGGAGGCGGACCAAG 61.832 60.000 0.00 0.00 39.06 3.61
5400 5494 1.415672 AAAGACAGGAGGCGGACCAA 61.416 55.000 0.00 0.00 39.06 3.67
5401 5495 1.415672 AAAAGACAGGAGGCGGACCA 61.416 55.000 0.00 0.00 39.06 4.02
5402 5496 0.611714 TAAAAGACAGGAGGCGGACC 59.388 55.000 0.00 0.00 0.00 4.46
5403 5497 1.405661 CCTAAAAGACAGGAGGCGGAC 60.406 57.143 0.00 0.00 34.91 4.79
5404 5498 0.902531 CCTAAAAGACAGGAGGCGGA 59.097 55.000 0.00 0.00 34.91 5.54
5405 5499 0.107654 CCCTAAAAGACAGGAGGCGG 60.108 60.000 0.00 0.00 34.91 6.13
5406 5500 0.744771 GCCCTAAAAGACAGGAGGCG 60.745 60.000 0.00 0.00 34.91 5.52
5407 5501 0.328258 TGCCCTAAAAGACAGGAGGC 59.672 55.000 0.00 0.00 34.91 4.70
5408 5502 2.507471 AGATGCCCTAAAAGACAGGAGG 59.493 50.000 0.00 0.00 34.91 4.30
5409 5503 3.432890 GGAGATGCCCTAAAAGACAGGAG 60.433 52.174 0.00 0.00 34.91 3.69
5410 5504 2.505819 GGAGATGCCCTAAAAGACAGGA 59.494 50.000 0.00 0.00 34.91 3.86
5411 5505 2.239654 TGGAGATGCCCTAAAAGACAGG 59.760 50.000 0.00 0.00 34.97 4.00
5412 5506 3.539604 CTGGAGATGCCCTAAAAGACAG 58.460 50.000 0.00 0.00 34.97 3.51
5413 5507 2.356125 GCTGGAGATGCCCTAAAAGACA 60.356 50.000 0.00 0.00 34.97 3.41
5414 5508 2.293170 GCTGGAGATGCCCTAAAAGAC 58.707 52.381 0.00 0.00 34.97 3.01
5415 5509 1.212935 GGCTGGAGATGCCCTAAAAGA 59.787 52.381 0.00 0.00 44.32 2.52
5416 5510 1.685148 GGCTGGAGATGCCCTAAAAG 58.315 55.000 0.00 0.00 44.32 2.27
5417 5511 3.903208 GGCTGGAGATGCCCTAAAA 57.097 52.632 0.00 0.00 44.32 1.52
5434 5528 3.646715 TCCCCAGGAAGCCAACGG 61.647 66.667 0.00 0.00 0.00 4.44
5435 5529 2.359975 GTCCCCAGGAAGCCAACG 60.360 66.667 0.00 0.00 31.38 4.10
5436 5530 2.359975 CGTCCCCAGGAAGCCAAC 60.360 66.667 0.00 0.00 31.38 3.77
5441 5535 0.326927 TTTTAGGCGTCCCCAGGAAG 59.673 55.000 0.00 0.00 34.41 3.46
5442 5536 0.996583 ATTTTAGGCGTCCCCAGGAA 59.003 50.000 0.00 0.00 31.38 3.36
5443 5537 0.544697 GATTTTAGGCGTCCCCAGGA 59.455 55.000 0.00 0.00 35.39 3.86
5444 5538 0.814010 CGATTTTAGGCGTCCCCAGG 60.814 60.000 0.00 0.00 35.39 4.45
5445 5539 1.436983 GCGATTTTAGGCGTCCCCAG 61.437 60.000 0.00 0.00 35.39 4.45
5446 5540 1.450669 GCGATTTTAGGCGTCCCCA 60.451 57.895 0.00 0.00 35.39 4.96
5447 5541 2.184830 GGCGATTTTAGGCGTCCCC 61.185 63.158 0.00 0.00 0.00 4.81
5448 5542 3.417601 GGCGATTTTAGGCGTCCC 58.582 61.111 0.00 0.00 0.00 4.46
5453 5547 0.450184 TTCAAGCGGCGATTTTAGGC 59.550 50.000 12.98 0.00 0.00 3.93
5454 5548 2.097466 ACATTCAAGCGGCGATTTTAGG 59.903 45.455 12.98 4.98 0.00 2.69
5455 5549 3.100817 CACATTCAAGCGGCGATTTTAG 58.899 45.455 12.98 0.00 0.00 1.85
5456 5550 2.744741 TCACATTCAAGCGGCGATTTTA 59.255 40.909 12.98 0.05 0.00 1.52
5457 5551 1.539388 TCACATTCAAGCGGCGATTTT 59.461 42.857 12.98 0.00 0.00 1.82
5458 5552 1.131126 CTCACATTCAAGCGGCGATTT 59.869 47.619 12.98 0.04 0.00 2.17
5459 5553 0.729116 CTCACATTCAAGCGGCGATT 59.271 50.000 12.98 8.32 0.00 3.34
5460 5554 1.709147 GCTCACATTCAAGCGGCGAT 61.709 55.000 12.98 0.00 0.00 4.58
5461 5555 2.390599 GCTCACATTCAAGCGGCGA 61.391 57.895 12.98 0.00 0.00 5.54
5462 5556 2.099062 GCTCACATTCAAGCGGCG 59.901 61.111 0.51 0.51 0.00 6.46
5463 5557 2.486966 GGCTCACATTCAAGCGGC 59.513 61.111 0.00 0.00 39.47 6.53
5464 5558 1.741401 TCGGCTCACATTCAAGCGG 60.741 57.895 0.00 0.00 39.47 5.52
5465 5559 1.421485 GTCGGCTCACATTCAAGCG 59.579 57.895 0.00 0.00 39.47 4.68
5466 5560 1.421485 CGTCGGCTCACATTCAAGC 59.579 57.895 0.00 0.00 37.80 4.01
5467 5561 1.291184 TGCGTCGGCTCACATTCAAG 61.291 55.000 0.00 0.00 40.82 3.02
5468 5562 0.882484 TTGCGTCGGCTCACATTCAA 60.882 50.000 0.00 0.00 40.82 2.69
5469 5563 0.882484 TTTGCGTCGGCTCACATTCA 60.882 50.000 0.00 0.00 40.82 2.57
5470 5564 0.237235 TTTTGCGTCGGCTCACATTC 59.763 50.000 0.00 0.00 40.82 2.67
5471 5565 0.665835 TTTTTGCGTCGGCTCACATT 59.334 45.000 0.00 0.00 40.82 2.71
5472 5566 0.881118 ATTTTTGCGTCGGCTCACAT 59.119 45.000 0.00 0.00 40.82 3.21
5473 5567 0.665835 AATTTTTGCGTCGGCTCACA 59.334 45.000 0.00 0.00 40.82 3.58
5474 5568 2.604969 TAATTTTTGCGTCGGCTCAC 57.395 45.000 0.00 0.00 40.82 3.51
5475 5569 2.667171 GCTTAATTTTTGCGTCGGCTCA 60.667 45.455 0.00 0.00 40.82 4.26
5476 5570 1.911464 GCTTAATTTTTGCGTCGGCTC 59.089 47.619 0.00 0.00 40.82 4.70
5477 5571 1.402325 GGCTTAATTTTTGCGTCGGCT 60.402 47.619 0.00 0.00 40.82 5.52
5478 5572 0.989164 GGCTTAATTTTTGCGTCGGC 59.011 50.000 0.00 0.00 40.52 5.54
5479 5573 2.250188 CAGGCTTAATTTTTGCGTCGG 58.750 47.619 0.00 0.00 0.00 4.79
5480 5574 2.250188 CCAGGCTTAATTTTTGCGTCG 58.750 47.619 0.00 0.00 0.00 5.12
5481 5575 2.606108 CCCAGGCTTAATTTTTGCGTC 58.394 47.619 0.00 0.00 0.00 5.19
5482 5576 1.275010 CCCCAGGCTTAATTTTTGCGT 59.725 47.619 0.00 0.00 0.00 5.24
5483 5577 1.405391 CCCCCAGGCTTAATTTTTGCG 60.405 52.381 0.00 0.00 0.00 4.85
5484 5578 2.401583 CCCCCAGGCTTAATTTTTGC 57.598 50.000 0.00 0.00 0.00 3.68
5496 5590 4.410400 GACCAACTCGCCCCCAGG 62.410 72.222 0.00 0.00 0.00 4.45
5497 5591 4.410400 GGACCAACTCGCCCCCAG 62.410 72.222 0.00 0.00 0.00 4.45
5537 5631 1.041437 TTTTAAAACGTGCCTGGGGG 58.959 50.000 0.00 0.00 0.00 5.40
5538 5632 4.522722 TTATTTTAAAACGTGCCTGGGG 57.477 40.909 1.97 0.00 0.00 4.96
5539 5633 6.217294 TCTTTTATTTTAAAACGTGCCTGGG 58.783 36.000 1.97 0.00 0.00 4.45
5540 5634 7.436970 ACTTCTTTTATTTTAAAACGTGCCTGG 59.563 33.333 1.97 0.00 0.00 4.45
5541 5635 8.347729 ACTTCTTTTATTTTAAAACGTGCCTG 57.652 30.769 1.97 0.00 0.00 4.85
5542 5636 8.936070 AACTTCTTTTATTTTAAAACGTGCCT 57.064 26.923 1.97 0.00 0.00 4.75
5543 5637 7.994343 CGAACTTCTTTTATTTTAAAACGTGCC 59.006 33.333 1.97 0.00 0.00 5.01
5544 5638 7.994343 CCGAACTTCTTTTATTTTAAAACGTGC 59.006 33.333 1.97 0.00 0.00 5.34
5545 5639 7.994343 GCCGAACTTCTTTTATTTTAAAACGTG 59.006 33.333 1.97 0.00 0.00 4.49
5546 5640 7.096925 CGCCGAACTTCTTTTATTTTAAAACGT 60.097 33.333 1.97 0.00 0.00 3.99
5547 5641 7.111870 TCGCCGAACTTCTTTTATTTTAAAACG 59.888 33.333 1.97 0.00 0.00 3.60
5548 5642 8.272436 TCGCCGAACTTCTTTTATTTTAAAAC 57.728 30.769 1.97 0.00 0.00 2.43
5549 5643 8.853469 TTCGCCGAACTTCTTTTATTTTAAAA 57.147 26.923 2.51 2.51 0.00 1.52
5550 5644 8.130469 ACTTCGCCGAACTTCTTTTATTTTAAA 58.870 29.630 0.00 0.00 0.00 1.52
5551 5645 7.641760 ACTTCGCCGAACTTCTTTTATTTTAA 58.358 30.769 0.00 0.00 0.00 1.52
5552 5646 7.193377 ACTTCGCCGAACTTCTTTTATTTTA 57.807 32.000 0.00 0.00 0.00 1.52
5553 5647 6.068473 ACTTCGCCGAACTTCTTTTATTTT 57.932 33.333 0.00 0.00 0.00 1.82
5554 5648 5.684550 ACTTCGCCGAACTTCTTTTATTT 57.315 34.783 0.00 0.00 0.00 1.40
5555 5649 5.614013 CGAACTTCGCCGAACTTCTTTTATT 60.614 40.000 14.37 0.00 31.14 1.40
5556 5650 4.143179 CGAACTTCGCCGAACTTCTTTTAT 60.143 41.667 14.37 0.00 31.14 1.40
5557 5651 3.182972 CGAACTTCGCCGAACTTCTTTTA 59.817 43.478 14.37 0.00 31.14 1.52
5558 5652 2.033151 CGAACTTCGCCGAACTTCTTTT 60.033 45.455 14.37 0.00 31.14 2.27
5559 5653 1.525619 CGAACTTCGCCGAACTTCTTT 59.474 47.619 14.37 0.00 31.14 2.52
5560 5654 1.137513 CGAACTTCGCCGAACTTCTT 58.862 50.000 14.37 0.00 31.14 2.52
5561 5655 0.031721 ACGAACTTCGCCGAACTTCT 59.968 50.000 11.15 3.04 45.12 2.85
5562 5656 0.161024 CACGAACTTCGCCGAACTTC 59.839 55.000 11.15 2.23 45.12 3.01
5563 5657 1.828331 GCACGAACTTCGCCGAACTT 61.828 55.000 11.15 0.00 45.12 2.66
5564 5658 2.308039 GCACGAACTTCGCCGAACT 61.308 57.895 11.15 0.00 45.12 3.01
5565 5659 1.828331 AAGCACGAACTTCGCCGAAC 61.828 55.000 11.15 0.00 45.12 3.95
5566 5660 1.554042 GAAGCACGAACTTCGCCGAA 61.554 55.000 11.15 0.00 45.12 4.30
5567 5661 2.019951 GAAGCACGAACTTCGCCGA 61.020 57.895 11.15 0.00 45.12 5.54
5568 5662 2.470286 GAAGCACGAACTTCGCCG 59.530 61.111 11.15 4.16 45.12 6.46
5569 5663 2.861006 GGAAGCACGAACTTCGCC 59.139 61.111 11.15 3.00 45.78 5.54
5571 5665 1.291877 CCTGGGAAGCACGAACTTCG 61.292 60.000 9.68 9.68 45.78 3.79
5572 5666 0.955919 CCCTGGGAAGCACGAACTTC 60.956 60.000 7.01 11.96 44.40 3.01
5573 5667 1.073199 CCCTGGGAAGCACGAACTT 59.927 57.895 7.01 0.00 0.00 2.66
5574 5668 2.750350 CCCTGGGAAGCACGAACT 59.250 61.111 7.01 0.00 0.00 3.01
5575 5669 3.056328 GCCCTGGGAAGCACGAAC 61.056 66.667 19.27 0.00 0.00 3.95
5576 5670 3.249189 AGCCCTGGGAAGCACGAA 61.249 61.111 19.27 0.00 0.00 3.85
5577 5671 4.020617 CAGCCCTGGGAAGCACGA 62.021 66.667 19.27 0.00 0.00 4.35
5595 5689 1.041437 TTTTAAAACGTGCCTGGGGG 58.959 50.000 0.00 0.00 0.00 5.40
5596 5690 4.522722 TTATTTTAAAACGTGCCTGGGG 57.477 40.909 1.97 0.00 0.00 4.96
5597 5691 6.217294 TCTTTTATTTTAAAACGTGCCTGGG 58.783 36.000 1.97 0.00 0.00 4.45
5598 5692 7.436970 ACTTCTTTTATTTTAAAACGTGCCTGG 59.563 33.333 1.97 0.00 0.00 4.45
5599 5693 8.347729 ACTTCTTTTATTTTAAAACGTGCCTG 57.652 30.769 1.97 0.00 0.00 4.85
5600 5694 8.936070 AACTTCTTTTATTTTAAAACGTGCCT 57.064 26.923 1.97 0.00 0.00 4.75
5601 5695 7.994343 CGAACTTCTTTTATTTTAAAACGTGCC 59.006 33.333 1.97 0.00 0.00 5.01
5602 5696 7.994343 CCGAACTTCTTTTATTTTAAAACGTGC 59.006 33.333 1.97 0.00 0.00 5.34
5603 5697 7.994343 GCCGAACTTCTTTTATTTTAAAACGTG 59.006 33.333 1.97 0.00 0.00 4.49
5604 5698 7.096925 CGCCGAACTTCTTTTATTTTAAAACGT 60.097 33.333 1.97 0.00 0.00 3.99
5605 5699 7.111870 TCGCCGAACTTCTTTTATTTTAAAACG 59.888 33.333 1.97 0.00 0.00 3.60
5606 5700 8.272436 TCGCCGAACTTCTTTTATTTTAAAAC 57.728 30.769 1.97 0.00 0.00 2.43
5607 5701 8.853469 TTCGCCGAACTTCTTTTATTTTAAAA 57.147 26.923 2.51 2.51 0.00 1.52
5608 5702 8.130469 ACTTCGCCGAACTTCTTTTATTTTAAA 58.870 29.630 0.00 0.00 0.00 1.52
5609 5703 7.641760 ACTTCGCCGAACTTCTTTTATTTTAA 58.358 30.769 0.00 0.00 0.00 1.52
5610 5704 7.193377 ACTTCGCCGAACTTCTTTTATTTTA 57.807 32.000 0.00 0.00 0.00 1.52
5611 5705 6.068473 ACTTCGCCGAACTTCTTTTATTTT 57.932 33.333 0.00 0.00 0.00 1.82
5612 5706 5.684550 ACTTCGCCGAACTTCTTTTATTT 57.315 34.783 0.00 0.00 0.00 1.40
5613 5707 5.614013 CGAACTTCGCCGAACTTCTTTTATT 60.614 40.000 14.37 0.00 31.14 1.40
5614 5708 4.143179 CGAACTTCGCCGAACTTCTTTTAT 60.143 41.667 14.37 0.00 31.14 1.40
5615 5709 3.182972 CGAACTTCGCCGAACTTCTTTTA 59.817 43.478 14.37 0.00 31.14 1.52
5616 5710 2.033151 CGAACTTCGCCGAACTTCTTTT 60.033 45.455 14.37 0.00 31.14 2.27
5617 5711 1.525619 CGAACTTCGCCGAACTTCTTT 59.474 47.619 14.37 0.00 31.14 2.52
5618 5712 1.137513 CGAACTTCGCCGAACTTCTT 58.862 50.000 14.37 0.00 31.14 2.52
5619 5713 0.666577 CCGAACTTCGCCGAACTTCT 60.667 55.000 14.37 0.00 38.82 2.85
5620 5714 1.779683 CCGAACTTCGCCGAACTTC 59.220 57.895 5.61 2.23 38.82 3.01
5621 5715 2.315386 GCCGAACTTCGCCGAACTT 61.315 57.895 5.61 0.00 38.82 2.66
5622 5716 2.710724 AAGCCGAACTTCGCCGAACT 62.711 55.000 5.61 0.00 38.82 3.01
5623 5717 1.010419 TAAGCCGAACTTCGCCGAAC 61.010 55.000 5.61 0.00 39.97 3.95
5624 5718 0.319727 TTAAGCCGAACTTCGCCGAA 60.320 50.000 5.61 0.00 39.97 4.30
5625 5719 0.734942 CTTAAGCCGAACTTCGCCGA 60.735 55.000 5.61 0.00 39.97 5.54
5626 5720 1.708027 CTTAAGCCGAACTTCGCCG 59.292 57.895 5.61 0.00 39.97 6.46
5627 5721 1.296056 TGCTTAAGCCGAACTTCGCC 61.296 55.000 24.30 0.00 39.97 5.54
5628 5722 0.179222 GTGCTTAAGCCGAACTTCGC 60.179 55.000 24.30 2.03 39.97 4.70
5629 5723 0.093026 CGTGCTTAAGCCGAACTTCG 59.907 55.000 24.30 12.77 39.97 3.79
5630 5724 1.425412 TCGTGCTTAAGCCGAACTTC 58.575 50.000 27.58 10.49 39.46 3.01
5631 5725 1.732259 CATCGTGCTTAAGCCGAACTT 59.268 47.619 30.85 19.29 43.14 2.66
5632 5726 1.067142 TCATCGTGCTTAAGCCGAACT 60.067 47.619 30.85 19.81 43.14 3.01
5633 5727 1.355971 TCATCGTGCTTAAGCCGAAC 58.644 50.000 30.85 20.38 43.14 3.95
5634 5728 2.087501 TTCATCGTGCTTAAGCCGAA 57.912 45.000 30.85 19.81 43.14 4.30
5635 5729 2.087501 TTTCATCGTGCTTAAGCCGA 57.912 45.000 29.97 29.97 43.68 5.54
5636 5730 3.354397 GAATTTCATCGTGCTTAAGCCG 58.646 45.455 24.30 24.04 41.18 5.52
5637 5731 3.354397 CGAATTTCATCGTGCTTAAGCC 58.646 45.455 24.30 14.34 38.01 4.35
5638 5732 3.354397 CCGAATTTCATCGTGCTTAAGC 58.646 45.455 20.84 20.84 41.16 3.09
5639 5733 3.354397 GCCGAATTTCATCGTGCTTAAG 58.646 45.455 0.00 0.00 41.16 1.85
5640 5734 2.096819 GGCCGAATTTCATCGTGCTTAA 59.903 45.455 0.00 0.00 41.16 1.85
5641 5735 1.668751 GGCCGAATTTCATCGTGCTTA 59.331 47.619 0.00 0.00 41.16 3.09
5642 5736 0.451783 GGCCGAATTTCATCGTGCTT 59.548 50.000 0.00 0.00 41.16 3.91
5643 5737 0.676466 TGGCCGAATTTCATCGTGCT 60.676 50.000 0.00 0.00 41.16 4.40
5644 5738 0.170116 TTGGCCGAATTTCATCGTGC 59.830 50.000 0.00 0.00 41.16 5.34
5645 5739 2.627863 TTTGGCCGAATTTCATCGTG 57.372 45.000 0.00 0.00 41.16 4.35
5646 5740 3.242608 CGTATTTGGCCGAATTTCATCGT 60.243 43.478 23.49 0.00 41.16 3.73
5647 5741 3.001838 TCGTATTTGGCCGAATTTCATCG 59.998 43.478 23.49 17.95 42.37 3.84
5648 5742 4.545823 TCGTATTTGGCCGAATTTCATC 57.454 40.909 23.49 8.52 0.00 2.92
5649 5743 6.627395 TTATCGTATTTGGCCGAATTTCAT 57.373 33.333 23.49 14.06 36.57 2.57
5650 5744 6.438259 TTTATCGTATTTGGCCGAATTTCA 57.562 33.333 23.49 7.94 36.57 2.69
5651 5745 7.924103 AATTTATCGTATTTGGCCGAATTTC 57.076 32.000 23.49 15.15 36.57 2.17
5652 5746 8.599774 CAAAATTTATCGTATTTGGCCGAATTT 58.400 29.630 23.49 6.37 36.57 1.82
5653 5747 7.223777 CCAAAATTTATCGTATTTGGCCGAATT 59.776 33.333 23.49 8.14 43.60 2.17
5654 5748 6.699642 CCAAAATTTATCGTATTTGGCCGAAT 59.300 34.615 22.05 22.05 43.60 3.34
5655 5749 6.037098 CCAAAATTTATCGTATTTGGCCGAA 58.963 36.000 8.18 8.18 43.60 4.30
5656 5750 5.583495 CCAAAATTTATCGTATTTGGCCGA 58.417 37.500 0.00 0.00 43.60 5.54
5657 5751 5.881637 CCAAAATTTATCGTATTTGGCCG 57.118 39.130 0.00 0.00 43.60 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.