Multiple sequence alignment - TraesCS2A01G222000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G222000 chr2A 100.000 5847 0 0 1 5847 212897599 212903445 0.000000e+00 10798.0
1 TraesCS2A01G222000 chr2A 81.448 221 31 8 1 217 646617176 646616962 7.790000e-39 172.0
2 TraesCS2A01G222000 chr2A 76.608 171 34 6 5250 5416 701499399 701499231 8.070000e-14 89.8
3 TraesCS2A01G222000 chr2A 92.453 53 2 2 3422 3472 65084855 65084803 2.260000e-09 75.0
4 TraesCS2A01G222000 chr2A 88.333 60 4 3 3422 3479 746253436 746253378 1.050000e-07 69.4
5 TraesCS2A01G222000 chr2D 97.145 2487 36 13 961 3424 196707541 196710015 0.000000e+00 4167.0
6 TraesCS2A01G222000 chr2D 96.761 1482 27 9 3424 4888 196709979 196711456 0.000000e+00 2451.0
7 TraesCS2A01G222000 chr2D 85.516 649 57 22 1 645 196706932 196707547 1.370000e-180 643.0
8 TraesCS2A01G222000 chr2D 95.181 83 4 0 4887 4969 196711578 196711660 1.320000e-26 132.0
9 TraesCS2A01G222000 chr2D 89.157 83 2 4 3347 3429 347465711 347465786 4.820000e-16 97.1
10 TraesCS2A01G222000 chr2D 86.301 73 8 2 5335 5406 204990417 204990346 1.750000e-10 78.7
11 TraesCS2A01G222000 chr2D 89.655 58 3 3 3422 3476 379699478 379699421 2.920000e-08 71.3
12 TraesCS2A01G222000 chr2B 96.875 2400 46 10 961 3342 254130018 254132406 0.000000e+00 3989.0
13 TraesCS2A01G222000 chr2B 94.472 1429 34 15 3429 4825 254132410 254133825 0.000000e+00 2159.0
14 TraesCS2A01G222000 chr2B 88.217 959 93 7 4887 5840 254140150 254141093 0.000000e+00 1127.0
15 TraesCS2A01G222000 chr2B 83.784 222 27 5 47 259 254124757 254124978 9.940000e-48 202.0
16 TraesCS2A01G222000 chr3A 93.485 307 13 2 647 947 143480037 143479732 3.210000e-122 449.0
17 TraesCS2A01G222000 chr3A 91.083 314 28 0 647 960 716801535 716801222 5.420000e-115 425.0
18 TraesCS2A01G222000 chr3A 91.083 314 22 2 647 960 69480656 69480963 2.520000e-113 420.0
19 TraesCS2A01G222000 chr6A 92.675 314 16 3 645 952 402845545 402845857 4.160000e-121 446.0
20 TraesCS2A01G222000 chr6A 89.286 56 4 1 3422 3477 509276994 509276941 1.050000e-07 69.4
21 TraesCS2A01G222000 chr6A 90.196 51 5 0 5335 5385 445561766 445561716 3.780000e-07 67.6
22 TraesCS2A01G222000 chr4A 93.137 306 16 1 647 947 474966738 474967043 1.500000e-120 444.0
23 TraesCS2A01G222000 chr4A 92.157 306 19 1 647 947 88712276 88712581 1.510000e-115 427.0
24 TraesCS2A01G222000 chr4A 82.743 226 26 6 1 215 679713975 679714198 7.730000e-44 189.0
25 TraesCS2A01G222000 chr4A 88.462 78 7 2 3347 3424 28995200 28995125 6.240000e-15 93.5
26 TraesCS2A01G222000 chr5A 93.603 297 14 1 648 939 510287085 510287381 6.960000e-119 438.0
27 TraesCS2A01G222000 chr5A 95.273 275 13 0 647 921 685003055 685003329 2.500000e-118 436.0
28 TraesCS2A01G222000 chr5A 91.077 325 19 2 647 961 447364447 447364771 1.160000e-116 431.0
29 TraesCS2A01G222000 chr5A 82.407 216 30 4 8 216 44971991 44972205 1.290000e-41 182.0
30 TraesCS2A01G222000 chr5A 76.000 200 37 9 5250 5440 652662198 652662001 6.240000e-15 93.5
31 TraesCS2A01G222000 chr4B 85.268 224 24 5 1 217 541127334 541127555 7.630000e-54 222.0
32 TraesCS2A01G222000 chr4B 82.258 124 11 4 3346 3462 526729019 526729138 4.820000e-16 97.1
33 TraesCS2A01G222000 chr4D 85.202 223 24 5 1 216 437926508 437926728 2.740000e-53 220.0
34 TraesCS2A01G222000 chr4D 82.301 226 27 6 1 215 472705315 472705538 3.600000e-42 183.0
35 TraesCS2A01G222000 chr4D 92.593 54 2 2 3422 3475 394941310 394941259 6.280000e-10 76.8
36 TraesCS2A01G222000 chr3B 81.778 225 30 7 1 217 261892112 261892333 1.670000e-40 178.0
37 TraesCS2A01G222000 chr6D 82.090 201 28 5 23 217 399562164 399561966 1.300000e-36 165.0
38 TraesCS2A01G222000 chr7A 79.899 199 34 5 5219 5413 164809872 164809676 2.200000e-29 141.0
39 TraesCS2A01G222000 chr7A 86.905 84 9 2 3347 3429 450224 450306 6.240000e-15 93.5
40 TraesCS2A01G222000 chr7B 93.590 78 3 1 3347 3424 736761393 736761468 1.330000e-21 115.0
41 TraesCS2A01G222000 chr7B 83.333 108 16 2 5334 5440 12961408 12961302 1.340000e-16 99.0
42 TraesCS2A01G222000 chr1D 84.252 127 9 5 3346 3461 447516565 447516691 4.790000e-21 113.0
43 TraesCS2A01G222000 chr3D 85.455 110 10 5 5335 5439 590082179 590082071 6.190000e-20 110.0
44 TraesCS2A01G222000 chr3D 82.759 116 15 4 5295 5406 454758437 454758323 1.340000e-16 99.0
45 TraesCS2A01G222000 chr7D 79.268 164 21 7 5258 5410 234137227 234137388 1.040000e-17 102.0
46 TraesCS2A01G222000 chr6B 89.024 82 7 2 3385 3464 147708712 147708631 3.730000e-17 100.0
47 TraesCS2A01G222000 chr6B 84.783 92 11 2 3373 3464 471674506 471674594 8.070000e-14 89.8
48 TraesCS2A01G222000 chr6B 94.231 52 2 1 3422 3472 113298916 113298865 1.750000e-10 78.7
49 TraesCS2A01G222000 chr6B 92.308 52 4 0 3422 3473 284242204 284242153 2.260000e-09 75.0
50 TraesCS2A01G222000 chr5D 88.608 79 8 1 3347 3424 273064111 273064189 1.730000e-15 95.3
51 TraesCS2A01G222000 chr1B 88.462 78 8 1 3348 3424 42332406 42332483 6.240000e-15 93.5
52 TraesCS2A01G222000 chr5B 89.091 55 6 0 5335 5389 81398160 81398214 1.050000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G222000 chr2A 212897599 212903445 5846 False 10798.00 10798 100.00000 1 5847 1 chr2A.!!$F1 5846
1 TraesCS2A01G222000 chr2D 196706932 196711660 4728 False 1848.25 4167 93.65075 1 4969 4 chr2D.!!$F2 4968
2 TraesCS2A01G222000 chr2B 254130018 254133825 3807 False 3074.00 3989 95.67350 961 4825 2 chr2B.!!$F3 3864
3 TraesCS2A01G222000 chr2B 254140150 254141093 943 False 1127.00 1127 88.21700 4887 5840 1 chr2B.!!$F2 953

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 894 0.105408 TAAAATCTACGCCCGAGCCC 59.895 55.000 0.00 0.0 34.57 5.19 F
964 968 1.694169 CATGGCCAGGTCTAGGGGT 60.694 63.158 13.05 0.0 0.00 4.95 F
1062 1067 2.316108 CAAAACCCTAAACCCAGCACT 58.684 47.619 0.00 0.0 0.00 4.40 F
1806 1812 3.611025 ATTTGGGAAGTGGTCAGGAAA 57.389 42.857 0.00 0.0 0.00 3.13 F
3050 3072 0.812014 TTGTCCAGAAAGCGTCGCAA 60.812 50.000 21.09 0.0 0.00 4.85 F
3967 3997 1.202927 CCTTTCTCCCAAAGTGCCTGA 60.203 52.381 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1806 1812 1.276622 AGTTATGGTGCTTCCCGACT 58.723 50.000 0.00 0.00 34.77 4.18 R
1950 1956 3.726557 ACCTGGAGATTTGAGCAATCA 57.273 42.857 0.00 0.00 43.63 2.57 R
3050 3072 3.368427 CGACCAACTCTGTGGATGTACAT 60.368 47.826 8.43 8.43 41.65 2.29 R
3413 3442 1.131883 CGTTTAGATCACTCCGTCCGT 59.868 52.381 0.00 0.00 0.00 4.69 R
4015 4059 0.108186 TACAAGGAGCATGCCGTGAG 60.108 55.000 15.66 4.72 39.40 3.51 R
5727 5917 0.109226 CTCTCTTCCCGTGTTCGTCC 60.109 60.000 0.00 0.00 35.01 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.241042 TCAAAGTATTGGCTCTAGTAACTGT 57.759 36.000 0.00 0.00 37.15 3.55
28 29 9.601217 CAAAGTATTGGCTCTAGTAACTGTAAT 57.399 33.333 0.00 0.00 32.69 1.89
29 30 9.601217 AAAGTATTGGCTCTAGTAACTGTAATG 57.399 33.333 0.00 0.00 0.00 1.90
61 64 7.973048 TTGTAGGTGATTACTAAGGAGTGAT 57.027 36.000 0.00 0.00 36.28 3.06
73 76 4.732672 AAGGAGTGATTTACGTAGGGTC 57.267 45.455 0.00 0.00 0.00 4.46
76 79 3.243002 GGAGTGATTTACGTAGGGTCTCG 60.243 52.174 0.00 0.00 0.00 4.04
98 101 1.363744 CCTCCACTCGACATGCTTTC 58.636 55.000 0.00 0.00 0.00 2.62
100 103 0.684535 TCCACTCGACATGCTTTCCA 59.315 50.000 0.00 0.00 0.00 3.53
105 108 0.955428 TCGACATGCTTTCCAGTGGC 60.955 55.000 3.51 0.00 0.00 5.01
110 113 0.537143 ATGCTTTCCAGTGGCGTTGA 60.537 50.000 3.51 0.00 0.00 3.18
123 126 2.742053 TGGCGTTGAAGCTTATCAAGAC 59.258 45.455 0.00 0.00 39.84 3.01
124 127 2.222819 GGCGTTGAAGCTTATCAAGACG 60.223 50.000 0.00 3.59 39.84 4.18
125 128 2.412089 GCGTTGAAGCTTATCAAGACGT 59.588 45.455 0.00 0.00 39.84 4.34
126 129 3.482112 GCGTTGAAGCTTATCAAGACGTC 60.482 47.826 7.70 7.70 39.84 4.34
127 130 3.921021 CGTTGAAGCTTATCAAGACGTCT 59.079 43.478 13.58 13.58 39.84 4.18
128 131 5.093457 CGTTGAAGCTTATCAAGACGTCTA 58.907 41.667 20.39 4.13 39.84 2.59
129 132 5.744345 CGTTGAAGCTTATCAAGACGTCTAT 59.256 40.000 20.39 12.32 39.84 1.98
130 133 6.253727 CGTTGAAGCTTATCAAGACGTCTATT 59.746 38.462 20.39 9.19 39.84 1.73
131 134 7.201444 CGTTGAAGCTTATCAAGACGTCTATTT 60.201 37.037 20.39 8.81 39.84 1.40
132 135 8.443937 GTTGAAGCTTATCAAGACGTCTATTTT 58.556 33.333 20.39 6.96 39.84 1.82
133 136 9.647797 TTGAAGCTTATCAAGACGTCTATTTTA 57.352 29.630 20.39 5.96 34.50 1.52
134 137 9.302345 TGAAGCTTATCAAGACGTCTATTTTAG 57.698 33.333 20.39 14.36 0.00 1.85
135 138 9.517609 GAAGCTTATCAAGACGTCTATTTTAGA 57.482 33.333 20.39 10.39 0.00 2.10
146 149 7.750903 AGACGTCTATTTTAGATTTGCTTTTGC 59.249 33.333 18.46 0.00 40.71 3.68
147 150 6.523201 ACGTCTATTTTAGATTTGCTTTTGCG 59.477 34.615 0.00 0.00 42.17 4.85
150 153 8.699749 GTCTATTTTAGATTTGCTTTTGCGTTT 58.300 29.630 0.00 0.00 42.17 3.60
221 224 3.777522 ACCTATGGCTAGAGTCTGCTTTT 59.222 43.478 1.86 0.00 0.00 2.27
223 226 5.425539 ACCTATGGCTAGAGTCTGCTTTTTA 59.574 40.000 1.86 0.00 0.00 1.52
227 230 6.500684 TGGCTAGAGTCTGCTTTTTAAATG 57.499 37.500 1.86 0.00 0.00 2.32
238 241 6.966632 TCTGCTTTTTAAATGATGCGATGTAC 59.033 34.615 0.00 0.00 0.00 2.90
247 250 4.729227 TGATGCGATGTACTAAAGGACA 57.271 40.909 0.00 0.00 0.00 4.02
253 256 6.399743 TGCGATGTACTAAAGGACACATTTA 58.600 36.000 0.00 0.00 31.94 1.40
306 309 8.301002 TCGTTACCATATATGTCGATGATTCAA 58.699 33.333 11.73 0.00 0.00 2.69
314 317 9.933723 ATATATGTCGATGATTCAATTCAGACA 57.066 29.630 12.73 12.73 40.86 3.41
322 325 7.520937 CGATGATTCAATTCAGACATTGGCATA 60.521 37.037 0.00 0.00 35.22 3.14
324 327 5.840243 TTCAATTCAGACATTGGCATAGG 57.160 39.130 0.00 0.00 35.22 2.57
329 332 4.508551 TCAGACATTGGCATAGGAACAT 57.491 40.909 0.00 0.00 0.00 2.71
335 338 5.371526 ACATTGGCATAGGAACATACAGAG 58.628 41.667 0.00 0.00 0.00 3.35
337 340 5.894298 TTGGCATAGGAACATACAGAGAT 57.106 39.130 0.00 0.00 0.00 2.75
345 348 4.584743 AGGAACATACAGAGATCGTATGCA 59.415 41.667 15.23 0.00 46.67 3.96
348 351 5.712152 ACATACAGAGATCGTATGCATGA 57.288 39.130 10.16 0.00 46.67 3.07
349 352 6.089249 ACATACAGAGATCGTATGCATGAA 57.911 37.500 10.16 0.00 46.67 2.57
385 388 3.106242 TGCTGTGAAGCTTAACGAAGA 57.894 42.857 9.47 0.00 34.25 2.87
389 392 4.762809 CTGTGAAGCTTAACGAAGAACAC 58.237 43.478 9.47 5.91 34.25 3.32
390 393 4.185394 TGTGAAGCTTAACGAAGAACACA 58.815 39.130 9.47 8.38 38.21 3.72
403 406 2.704572 AGAACACAGAATGGTAGCAGC 58.295 47.619 0.00 0.00 43.62 5.25
407 410 2.567169 ACACAGAATGGTAGCAGCTGTA 59.433 45.455 24.11 3.74 43.62 2.74
440 443 2.930950 CCGAAGGCATTCCCATAAAGA 58.069 47.619 5.38 0.00 46.14 2.52
442 445 3.699038 CCGAAGGCATTCCCATAAAGAAA 59.301 43.478 5.38 0.00 46.14 2.52
443 446 4.159506 CCGAAGGCATTCCCATAAAGAAAA 59.840 41.667 5.38 0.00 46.14 2.29
444 447 5.343249 CGAAGGCATTCCCATAAAGAAAAG 58.657 41.667 5.38 0.00 35.39 2.27
464 467 8.803235 AGAAAAGAAAAACTATATTTCCGCCTT 58.197 29.630 0.00 0.00 37.47 4.35
469 472 7.829706 AGAAAAACTATATTTCCGCCTTTCTCT 59.170 33.333 0.00 0.00 37.47 3.10
470 473 6.927294 AAACTATATTTCCGCCTTTCTCTG 57.073 37.500 0.00 0.00 0.00 3.35
493 497 4.151512 GCAAAATAAAAACACATCCCCGTG 59.848 41.667 0.00 0.00 42.81 4.94
527 531 1.464997 GCAAAACACATCCCGTCTCTC 59.535 52.381 0.00 0.00 0.00 3.20
529 533 0.613777 AAACACATCCCGTCTCTCCC 59.386 55.000 0.00 0.00 0.00 4.30
530 534 0.252284 AACACATCCCGTCTCTCCCT 60.252 55.000 0.00 0.00 0.00 4.20
548 552 1.751351 CCTCTATGTGAGCCACGAAGA 59.249 52.381 0.00 5.49 41.35 2.87
573 577 2.434884 CAGCACGTACCCAGCCTG 60.435 66.667 0.00 0.00 0.00 4.85
578 582 3.066190 CGTACCCAGCCTGGTCGA 61.066 66.667 10.47 0.00 39.91 4.20
597 601 0.255033 ACCAGGAAATACGCCTTCCC 59.745 55.000 0.00 0.00 42.98 3.97
600 604 0.177373 AGGAAATACGCCTTCCCGAC 59.823 55.000 7.05 0.00 42.98 4.79
612 616 3.442100 CCTTCCCGACTGATTTACGTAC 58.558 50.000 0.00 0.00 0.00 3.67
614 618 4.381292 CCTTCCCGACTGATTTACGTACTT 60.381 45.833 0.00 0.00 0.00 2.24
619 623 6.150976 TCCCGACTGATTTACGTACTTCTTTA 59.849 38.462 0.00 0.00 0.00 1.85
621 625 7.246311 CCGACTGATTTACGTACTTCTTTAGA 58.754 38.462 0.00 0.00 0.00 2.10
652 656 9.443365 AACGCTATATATGGGGTTATTATACCT 57.557 33.333 24.05 3.35 41.33 3.08
653 657 8.867097 ACGCTATATATGGGGTTATTATACCTG 58.133 37.037 12.26 0.00 38.30 4.00
654 658 8.311836 CGCTATATATGGGGTTATTATACCTGG 58.688 40.741 5.13 0.00 38.30 4.45
655 659 8.101419 GCTATATATGGGGTTATTATACCTGGC 58.899 40.741 0.00 0.00 38.30 4.85
656 660 5.727243 ATATGGGGTTATTATACCTGGCC 57.273 43.478 0.00 0.00 38.30 5.36
657 661 2.790483 TGGGGTTATTATACCTGGCCA 58.210 47.619 4.71 4.71 38.30 5.36
658 662 3.132056 TGGGGTTATTATACCTGGCCAA 58.868 45.455 7.01 0.00 38.30 4.52
659 663 3.532232 TGGGGTTATTATACCTGGCCAAA 59.468 43.478 7.01 0.00 38.30 3.28
660 664 3.893200 GGGGTTATTATACCTGGCCAAAC 59.107 47.826 7.01 5.42 38.30 2.93
661 665 3.893200 GGGTTATTATACCTGGCCAAACC 59.107 47.826 19.27 19.27 38.30 3.27
662 666 4.387098 GGGTTATTATACCTGGCCAAACCT 60.387 45.833 24.08 7.11 38.30 3.50
663 667 4.825634 GGTTATTATACCTGGCCAAACCTC 59.174 45.833 19.91 0.29 40.22 3.85
664 668 2.702592 TTATACCTGGCCAAACCTCG 57.297 50.000 7.01 0.00 40.22 4.63
665 669 0.834612 TATACCTGGCCAAACCTCGG 59.165 55.000 7.01 5.79 40.22 4.63
666 670 1.921869 ATACCTGGCCAAACCTCGGG 61.922 60.000 7.01 4.92 40.22 5.14
706 710 4.554036 CCTAGCCAAGCCCGAGCC 62.554 72.222 0.00 0.00 41.25 4.70
707 711 3.785859 CTAGCCAAGCCCGAGCCA 61.786 66.667 0.00 0.00 41.25 4.75
708 712 3.326578 TAGCCAAGCCCGAGCCAA 61.327 61.111 0.00 0.00 41.25 4.52
709 713 2.819984 CTAGCCAAGCCCGAGCCAAA 62.820 60.000 0.00 0.00 41.25 3.28
710 714 2.419011 TAGCCAAGCCCGAGCCAAAA 62.419 55.000 0.00 0.00 41.25 2.44
711 715 2.866726 GCCAAGCCCGAGCCAAAAA 61.867 57.895 0.00 0.00 41.25 1.94
725 729 2.600470 AAAAACCTGGGCCCGAGC 60.600 61.111 19.37 0.00 38.76 5.03
754 758 1.102978 CCATCGGGCCTAGTTTTTGG 58.897 55.000 0.84 0.00 0.00 3.28
755 759 1.102978 CATCGGGCCTAGTTTTTGGG 58.897 55.000 0.84 0.00 0.00 4.12
756 760 0.683179 ATCGGGCCTAGTTTTTGGGC 60.683 55.000 0.84 0.00 46.59 5.36
759 763 4.531351 GCCTAGTTTTTGGGCCCA 57.469 55.556 24.45 24.45 39.96 5.36
760 764 2.753319 GCCTAGTTTTTGGGCCCAA 58.247 52.632 34.07 34.07 39.96 4.12
761 765 0.608130 GCCTAGTTTTTGGGCCCAAG 59.392 55.000 35.02 23.09 39.96 3.61
762 766 0.608130 CCTAGTTTTTGGGCCCAAGC 59.392 55.000 35.02 27.17 37.24 4.01
780 784 3.369400 CCGGCCCGAACATGCAAA 61.369 61.111 3.71 0.00 0.00 3.68
781 785 2.647875 CGGCCCGAACATGCAAAA 59.352 55.556 0.00 0.00 0.00 2.44
782 786 1.444212 CGGCCCGAACATGCAAAAG 60.444 57.895 0.00 0.00 0.00 2.27
783 787 1.737735 GGCCCGAACATGCAAAAGC 60.738 57.895 0.00 0.00 0.00 3.51
784 788 1.290009 GCCCGAACATGCAAAAGCT 59.710 52.632 0.00 0.00 0.00 3.74
785 789 0.733909 GCCCGAACATGCAAAAGCTC 60.734 55.000 0.00 0.00 0.00 4.09
786 790 0.454957 CCCGAACATGCAAAAGCTCG 60.455 55.000 0.00 0.00 0.00 5.03
787 791 1.067199 CCGAACATGCAAAAGCTCGC 61.067 55.000 0.00 0.00 0.00 5.03
788 792 1.067199 CGAACATGCAAAAGCTCGCC 61.067 55.000 0.00 0.00 0.00 5.54
789 793 1.067199 GAACATGCAAAAGCTCGCCG 61.067 55.000 0.00 0.00 0.00 6.46
790 794 2.202518 CATGCAAAAGCTCGCCGG 60.203 61.111 0.00 0.00 0.00 6.13
791 795 3.443045 ATGCAAAAGCTCGCCGGG 61.443 61.111 2.18 0.00 0.00 5.73
822 826 4.360405 GCCGGGCCCCTTCAGAAA 62.360 66.667 18.66 0.00 0.00 2.52
823 827 2.438795 CCGGGCCCCTTCAGAAAA 59.561 61.111 18.66 0.00 0.00 2.29
824 828 1.977009 CCGGGCCCCTTCAGAAAAC 60.977 63.158 18.66 0.00 0.00 2.43
825 829 2.332654 CGGGCCCCTTCAGAAAACG 61.333 63.158 18.66 0.00 0.00 3.60
826 830 1.977009 GGGCCCCTTCAGAAAACGG 60.977 63.158 12.23 0.00 0.00 4.44
827 831 2.636412 GGCCCCTTCAGAAAACGGC 61.636 63.158 0.00 6.34 35.60 5.68
828 832 1.901464 GCCCCTTCAGAAAACGGCA 60.901 57.895 9.11 0.00 36.38 5.69
829 833 1.460273 GCCCCTTCAGAAAACGGCAA 61.460 55.000 9.11 0.00 36.38 4.52
830 834 1.036707 CCCCTTCAGAAAACGGCAAA 58.963 50.000 0.00 0.00 0.00 3.68
831 835 1.410882 CCCCTTCAGAAAACGGCAAAA 59.589 47.619 0.00 0.00 0.00 2.44
832 836 2.159028 CCCCTTCAGAAAACGGCAAAAA 60.159 45.455 0.00 0.00 0.00 1.94
833 837 3.494223 CCCCTTCAGAAAACGGCAAAAAT 60.494 43.478 0.00 0.00 0.00 1.82
834 838 3.494251 CCCTTCAGAAAACGGCAAAAATG 59.506 43.478 0.00 0.00 0.00 2.32
835 839 4.367450 CCTTCAGAAAACGGCAAAAATGA 58.633 39.130 0.00 0.00 0.00 2.57
836 840 4.209080 CCTTCAGAAAACGGCAAAAATGAC 59.791 41.667 0.00 0.00 0.00 3.06
838 842 2.470999 CAGAAAACGGCAAAAATGACGG 59.529 45.455 9.09 0.00 46.09 4.79
839 843 1.790043 GAAAACGGCAAAAATGACGGG 59.210 47.619 9.09 0.00 46.09 5.28
840 844 0.598942 AAACGGCAAAAATGACGGGC 60.599 50.000 9.09 0.00 46.09 6.13
841 845 2.126110 CGGCAAAAATGACGGGCC 60.126 61.111 0.00 0.00 41.20 5.80
842 846 2.264480 GGCAAAAATGACGGGCCC 59.736 61.111 13.57 13.57 38.70 5.80
843 847 2.126110 GCAAAAATGACGGGCCCG 60.126 61.111 42.17 42.17 46.03 6.13
844 848 2.571231 CAAAAATGACGGGCCCGG 59.429 61.111 44.99 28.13 44.69 5.73
845 849 2.678580 AAAAATGACGGGCCCGGG 60.679 61.111 44.99 22.37 44.69 5.73
872 876 3.712907 GCCAGGCCACCGGTCTTA 61.713 66.667 2.59 0.00 34.19 2.10
873 877 3.074281 CCAGGCCACCGGTCTTAA 58.926 61.111 2.59 0.00 34.19 1.85
874 878 1.377229 CCAGGCCACCGGTCTTAAA 59.623 57.895 2.59 0.00 34.19 1.52
875 879 0.250989 CCAGGCCACCGGTCTTAAAA 60.251 55.000 2.59 0.00 34.19 1.52
876 880 1.615919 CCAGGCCACCGGTCTTAAAAT 60.616 52.381 2.59 0.00 34.19 1.82
877 881 1.743394 CAGGCCACCGGTCTTAAAATC 59.257 52.381 2.59 0.00 34.19 2.17
878 882 1.633945 AGGCCACCGGTCTTAAAATCT 59.366 47.619 2.59 0.00 31.15 2.40
879 883 2.841881 AGGCCACCGGTCTTAAAATCTA 59.158 45.455 2.59 0.00 31.15 1.98
880 884 2.941064 GGCCACCGGTCTTAAAATCTAC 59.059 50.000 2.59 0.00 0.00 2.59
881 885 2.606272 GCCACCGGTCTTAAAATCTACG 59.394 50.000 2.59 0.00 0.00 3.51
882 886 2.606272 CCACCGGTCTTAAAATCTACGC 59.394 50.000 2.59 0.00 0.00 4.42
883 887 2.606272 CACCGGTCTTAAAATCTACGCC 59.394 50.000 2.59 0.00 0.00 5.68
884 888 2.207590 CCGGTCTTAAAATCTACGCCC 58.792 52.381 0.00 0.00 0.00 6.13
885 889 1.856597 CGGTCTTAAAATCTACGCCCG 59.143 52.381 0.00 0.00 0.00 6.13
886 890 2.480073 CGGTCTTAAAATCTACGCCCGA 60.480 50.000 0.00 0.00 35.04 5.14
887 891 3.121544 GGTCTTAAAATCTACGCCCGAG 58.878 50.000 0.00 0.00 0.00 4.63
888 892 2.538861 GTCTTAAAATCTACGCCCGAGC 59.461 50.000 0.00 0.00 0.00 5.03
889 893 1.865340 CTTAAAATCTACGCCCGAGCC 59.135 52.381 0.00 0.00 34.57 4.70
890 894 0.105408 TAAAATCTACGCCCGAGCCC 59.895 55.000 0.00 0.00 34.57 5.19
891 895 2.918230 AAAATCTACGCCCGAGCCCG 62.918 60.000 0.00 0.00 34.57 6.13
930 934 4.340246 GGGTCGGGTCGGGCTTTT 62.340 66.667 0.00 0.00 0.00 2.27
931 935 2.281970 GGTCGGGTCGGGCTTTTT 60.282 61.111 0.00 0.00 0.00 1.94
932 936 2.330372 GGTCGGGTCGGGCTTTTTC 61.330 63.158 0.00 0.00 0.00 2.29
933 937 2.357760 TCGGGTCGGGCTTTTTCG 60.358 61.111 0.00 0.00 0.00 3.46
934 938 3.428282 CGGGTCGGGCTTTTTCGG 61.428 66.667 0.00 0.00 0.00 4.30
935 939 3.060000 GGGTCGGGCTTTTTCGGG 61.060 66.667 0.00 0.00 0.00 5.14
936 940 3.744719 GGTCGGGCTTTTTCGGGC 61.745 66.667 0.00 0.00 0.00 6.13
937 941 3.744719 GTCGGGCTTTTTCGGGCC 61.745 66.667 0.00 0.00 46.89 5.80
943 947 3.747976 CTTTTTCGGGCCGGGCTG 61.748 66.667 30.31 30.31 0.00 4.85
964 968 1.694169 CATGGCCAGGTCTAGGGGT 60.694 63.158 13.05 0.00 0.00 4.95
984 988 6.008331 GGGGTTATAAAGAAGAACACCAGTT 58.992 40.000 0.40 0.00 44.61 3.16
1062 1067 2.316108 CAAAACCCTAAACCCAGCACT 58.684 47.619 0.00 0.00 0.00 4.40
1688 1694 7.256332 GGGTAGCTCATCTTATCACAATCCTTA 60.256 40.741 0.00 0.00 0.00 2.69
1806 1812 3.611025 ATTTGGGAAGTGGTCAGGAAA 57.389 42.857 0.00 0.00 0.00 3.13
1950 1956 5.221126 GCACTTTGATGAGACTCCAAACTTT 60.221 40.000 0.00 0.00 0.00 2.66
2686 2708 4.534500 TGAGTGTACCAAGGGTGATTACAT 59.466 41.667 0.00 0.00 36.19 2.29
3006 3028 6.462073 TTGAAACGCTCATACTGTAACTTC 57.538 37.500 0.00 0.00 32.78 3.01
3009 3031 7.372714 TGAAACGCTCATACTGTAACTTCTTA 58.627 34.615 0.00 0.00 0.00 2.10
3010 3032 7.541091 TGAAACGCTCATACTGTAACTTCTTAG 59.459 37.037 0.00 0.00 0.00 2.18
3012 3034 6.921914 ACGCTCATACTGTAACTTCTTAGTT 58.078 36.000 0.00 0.00 46.18 2.24
3013 3035 6.807230 ACGCTCATACTGTAACTTCTTAGTTG 59.193 38.462 0.00 0.00 44.22 3.16
3014 3036 6.807230 CGCTCATACTGTAACTTCTTAGTTGT 59.193 38.462 0.00 0.00 44.22 3.32
3015 3037 7.328737 CGCTCATACTGTAACTTCTTAGTTGTT 59.671 37.037 0.00 0.00 44.22 2.83
3016 3038 8.436200 GCTCATACTGTAACTTCTTAGTTGTTG 58.564 37.037 0.00 0.00 44.22 3.33
3017 3039 9.477484 CTCATACTGTAACTTCTTAGTTGTTGT 57.523 33.333 0.00 0.00 44.22 3.32
3018 3040 9.472361 TCATACTGTAACTTCTTAGTTGTTGTC 57.528 33.333 0.00 0.00 44.22 3.18
3050 3072 0.812014 TTGTCCAGAAAGCGTCGCAA 60.812 50.000 21.09 0.00 0.00 4.85
3177 3199 7.384387 GGCAACCGAGAGTAAAATACCTATTAG 59.616 40.741 0.00 0.00 0.00 1.73
3184 3206 8.868635 AGAGTAAAATACCTATTAGTGTTCGC 57.131 34.615 0.00 0.00 0.00 4.70
3290 3312 3.384146 TCAATCTCATCTCAGGTGAGCTC 59.616 47.826 10.44 6.82 42.17 4.09
3371 3393 8.980596 TGTACTCCCTCCGTAAAGAAATATAAA 58.019 33.333 0.00 0.00 0.00 1.40
3419 3448 7.639162 ATGCTCTTATATTTCTTTACGGACG 57.361 36.000 0.00 0.00 0.00 4.79
3420 3449 5.981315 TGCTCTTATATTTCTTTACGGACGG 59.019 40.000 0.00 0.00 0.00 4.79
3421 3450 6.183360 TGCTCTTATATTTCTTTACGGACGGA 60.183 38.462 0.00 0.00 0.00 4.69
3422 3451 6.362820 GCTCTTATATTTCTTTACGGACGGAG 59.637 42.308 0.00 0.00 0.00 4.63
3487 3517 3.895232 TTCATGTCTAGCAGGACTTCC 57.105 47.619 9.78 0.00 37.65 3.46
3530 3560 6.719370 TGTCCAAATTGTCTTTGTTATAGCCT 59.281 34.615 0.00 0.00 0.00 4.58
3668 3698 2.158608 CCAGGGAGACAAAGAGGTGTTT 60.159 50.000 0.00 0.00 0.00 2.83
3839 3869 8.697067 CACAAAGCTGAAGTCATTGAAATAAAG 58.303 33.333 0.00 0.00 0.00 1.85
3967 3997 1.202927 CCTTTCTCCCAAAGTGCCTGA 60.203 52.381 0.00 0.00 0.00 3.86
4074 4118 1.833630 CAGGCTCAGATCTGGGTGTTA 59.166 52.381 23.50 1.90 32.48 2.41
4147 4191 5.682212 GCCCTTGAAAAAGAAGAAGCTGAAA 60.682 40.000 0.00 0.00 0.00 2.69
4213 4257 2.807622 GGCAATGCGATTGACCCC 59.192 61.111 11.52 2.26 42.56 4.95
4272 4316 6.899114 ACGTGATTCACAAGGATAAAAGTTC 58.101 36.000 16.61 0.00 33.40 3.01
4288 4332 9.827411 GATAAAAGTTCGTTCAGCTTCTTTTAT 57.173 29.630 15.64 15.64 43.89 1.40
4858 4921 3.903714 AGACTTGCTTATTTGGCCCTTTT 59.096 39.130 0.00 0.00 0.00 2.27
4862 4925 6.596621 ACTTGCTTATTTGGCCCTTTTAAAA 58.403 32.000 0.00 0.00 0.00 1.52
4863 4926 6.710295 ACTTGCTTATTTGGCCCTTTTAAAAG 59.290 34.615 19.19 19.19 35.79 2.27
4888 4951 0.258774 TGCTTCCCTATTTGGCCCTC 59.741 55.000 0.00 0.00 0.00 4.30
4889 4952 0.468214 GCTTCCCTATTTGGCCCTCC 60.468 60.000 0.00 0.00 0.00 4.30
4923 5109 7.362834 CCATATTAATTGATGCTAATTCGGCCA 60.363 37.037 2.24 0.00 32.79 5.36
4942 5128 5.799936 CGGCCATTTAAAATATATGCTTCCG 59.200 40.000 2.24 0.00 0.00 4.30
4972 5158 6.946009 TGGTCCTAGCCCTTTATAAAATATGC 59.054 38.462 0.00 0.45 0.00 3.14
4996 5182 9.131791 TGCTTCTCTATTTGTTCCTAACTTTTT 57.868 29.630 0.00 0.00 0.00 1.94
5174 5360 4.444536 TGAAAAATCCGTCCCCTTATACG 58.555 43.478 0.00 0.00 38.80 3.06
5176 5362 0.316204 AATCCGTCCCCTTATACGCG 59.684 55.000 3.53 3.53 37.78 6.01
5177 5363 0.825010 ATCCGTCCCCTTATACGCGT 60.825 55.000 19.17 19.17 37.78 6.01
5178 5364 1.299620 CCGTCCCCTTATACGCGTG 60.300 63.158 24.59 4.34 37.78 5.34
5182 5368 1.227438 CCCCTTATACGCGTGTGGG 60.227 63.158 24.59 22.10 34.68 4.61
5183 5369 1.885850 CCCTTATACGCGTGTGGGC 60.886 63.158 24.59 0.00 0.00 5.36
5184 5370 1.153529 CCTTATACGCGTGTGGGCA 60.154 57.895 24.59 0.00 0.00 5.36
5211 5397 1.304381 GACAATGCTTGGCCCCTCA 60.304 57.895 0.00 0.00 30.38 3.86
5244 5430 3.142838 CCTCATTTGGCCTGCCGG 61.143 66.667 3.32 0.00 39.42 6.13
5246 5432 1.454479 CTCATTTGGCCTGCCGGAT 60.454 57.895 5.05 0.00 39.42 4.18
5283 5469 7.348815 TCAAATGTAGATCCTCAAATCCATGT 58.651 34.615 0.00 0.00 0.00 3.21
5321 5507 3.495331 TCCTAGAGCACAAATTTGGCAA 58.505 40.909 24.29 0.00 0.00 4.52
5332 5518 4.633565 ACAAATTTGGCAATTCAACAACGT 59.366 33.333 21.74 0.00 30.80 3.99
5350 5536 7.160633 ACAACGTGACAAAGCAAAATAAATC 57.839 32.000 0.00 0.00 0.00 2.17
5364 5550 9.846248 AGCAAAATAAATCATAGTTCAACAGTC 57.154 29.630 0.00 0.00 0.00 3.51
5379 5565 1.176527 CAGTCCGGTCATGCCAAAAT 58.823 50.000 0.00 0.00 36.97 1.82
5389 5575 5.389725 CGGTCATGCCAAAATGAAATTCAAC 60.390 40.000 0.00 0.00 38.28 3.18
5418 5604 1.629861 TGATGGATCACTTGCTGGTCA 59.370 47.619 0.00 0.00 30.50 4.02
5430 5616 1.893062 CTGGTCAGATCACTCGCCA 59.107 57.895 0.00 0.00 0.00 5.69
5452 5642 2.185350 CCATCTCGCCTGCTTCGT 59.815 61.111 0.00 0.00 0.00 3.85
5454 5644 1.699656 CCATCTCGCCTGCTTCGTTG 61.700 60.000 0.00 0.00 0.00 4.10
5469 5659 1.553248 TCGTTGTCATCCTTACCCCTG 59.447 52.381 0.00 0.00 0.00 4.45
5472 5662 1.668826 TGTCATCCTTACCCCTGCTT 58.331 50.000 0.00 0.00 0.00 3.91
5487 5677 1.208614 GCTTCGACTGCTTTGCCTG 59.791 57.895 2.68 0.00 0.00 4.85
5499 5689 1.470996 TTTGCCTGGACCATTGCCAC 61.471 55.000 12.27 0.00 0.00 5.01
5509 5699 1.352352 ACCATTGCCACTTGCTCTACT 59.648 47.619 0.00 0.00 42.00 2.57
5530 5720 3.134127 ATCTTTGCCTTCGCGCCC 61.134 61.111 0.00 0.00 38.08 6.13
5556 5746 1.070758 CTCCATCACCGGTTCCTATGG 59.929 57.143 21.22 21.22 38.76 2.74
5647 5837 4.619227 CAGCGTTGTGGGACGGGT 62.619 66.667 0.00 0.00 42.98 5.28
5666 5856 1.672854 TTGGTCGACATCTAGGCCGG 61.673 60.000 18.91 0.00 0.00 6.13
5675 5865 3.946201 CTAGGCCGGCAGATGGGG 61.946 72.222 30.85 6.58 0.00 4.96
5683 5873 4.424711 GCAGATGGGGGCCAACGA 62.425 66.667 4.39 0.00 36.95 3.85
5698 5888 1.038130 AACGACGAGGATGAGGGAGG 61.038 60.000 0.00 0.00 0.00 4.30
5704 5894 0.266152 GAGGATGAGGGAGGAAGGGA 59.734 60.000 0.00 0.00 0.00 4.20
5712 5902 1.305046 GGAGGAAGGGAGGACGACA 60.305 63.158 0.00 0.00 0.00 4.35
5713 5903 0.903454 GGAGGAAGGGAGGACGACAA 60.903 60.000 0.00 0.00 0.00 3.18
5727 5917 3.550030 GGACGACAACAAAGGAAATGGTG 60.550 47.826 0.00 0.00 41.31 4.17
5731 5921 2.360801 ACAACAAAGGAAATGGTGGACG 59.639 45.455 0.00 0.00 39.84 4.79
5749 5939 0.319555 CGAACACGGGAAGAGAGCAA 60.320 55.000 0.00 0.00 0.00 3.91
5761 5951 1.425066 AGAGAGCAATGGGTTTGGTGA 59.575 47.619 0.00 0.00 45.76 4.02
5763 5953 2.827921 GAGAGCAATGGGTTTGGTGAAT 59.172 45.455 0.00 0.00 45.76 2.57
5768 5958 3.367703 GCAATGGGTTTGGTGAATCTGAG 60.368 47.826 0.00 0.00 35.75 3.35
5780 5971 3.507233 GTGAATCTGAGGGATTTGTGCAA 59.493 43.478 0.00 0.00 43.90 4.08
5788 5979 4.776837 TGAGGGATTTGTGCAATTTATGGT 59.223 37.500 0.00 0.00 0.00 3.55
5800 5991 0.331278 TTTATGGTGGGGTCAGGCTG 59.669 55.000 8.58 8.58 0.00 4.85
5805 5996 3.640407 TGGGGTCAGGCTGTCTGC 61.640 66.667 15.27 0.00 43.06 4.26
5811 6002 0.035630 GTCAGGCTGTCTGCTCCAAT 60.036 55.000 15.27 0.00 43.06 3.16
5817 6008 1.610102 GCTGTCTGCTCCAATGTGACT 60.610 52.381 0.00 0.00 38.95 3.41
5840 6031 0.530870 GCGCCTGGGTCTTCTCATAC 60.531 60.000 0.00 0.00 0.00 2.39
5841 6032 0.105039 CGCCTGGGTCTTCTCATACC 59.895 60.000 0.00 0.00 34.85 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.698309 CACTCCTTAGTAATCACCTACAATATG 57.302 37.037 0.00 0.00 33.48 1.78
40 41 8.627403 CGTAAATCACTCCTTAGTAATCACCTA 58.373 37.037 0.00 0.00 33.48 3.08
61 64 0.527565 GGCACGAGACCCTACGTAAA 59.472 55.000 0.00 0.00 40.76 2.01
73 76 1.938657 ATGTCGAGTGGAGGCACGAG 61.939 60.000 0.00 0.00 35.52 4.18
76 79 2.103042 GCATGTCGAGTGGAGGCAC 61.103 63.158 0.00 0.00 0.00 5.01
98 101 1.398390 GATAAGCTTCAACGCCACTGG 59.602 52.381 0.00 0.00 0.00 4.00
100 103 2.472695 TGATAAGCTTCAACGCCACT 57.527 45.000 0.00 0.00 0.00 4.00
105 108 3.921021 AGACGTCTTGATAAGCTTCAACG 59.079 43.478 13.58 6.66 36.44 4.10
123 126 6.523201 ACGCAAAAGCAAATCTAAAATAGACG 59.477 34.615 0.00 0.00 37.69 4.18
124 127 7.796958 ACGCAAAAGCAAATCTAAAATAGAC 57.203 32.000 0.00 0.00 37.69 2.59
125 128 8.698854 CAAACGCAAAAGCAAATCTAAAATAGA 58.301 29.630 0.00 0.00 39.50 1.98
126 129 7.475256 GCAAACGCAAAAGCAAATCTAAAATAG 59.525 33.333 0.00 0.00 0.00 1.73
127 130 7.170658 AGCAAACGCAAAAGCAAATCTAAAATA 59.829 29.630 0.00 0.00 0.00 1.40
128 131 6.018016 AGCAAACGCAAAAGCAAATCTAAAAT 60.018 30.769 0.00 0.00 0.00 1.82
129 132 5.293079 AGCAAACGCAAAAGCAAATCTAAAA 59.707 32.000 0.00 0.00 0.00 1.52
130 133 4.808364 AGCAAACGCAAAAGCAAATCTAAA 59.192 33.333 0.00 0.00 0.00 1.85
131 134 4.367450 AGCAAACGCAAAAGCAAATCTAA 58.633 34.783 0.00 0.00 0.00 2.10
132 135 3.976169 AGCAAACGCAAAAGCAAATCTA 58.024 36.364 0.00 0.00 0.00 1.98
133 136 2.825205 AGCAAACGCAAAAGCAAATCT 58.175 38.095 0.00 0.00 0.00 2.40
134 137 3.242381 ACAAGCAAACGCAAAAGCAAATC 60.242 39.130 0.00 0.00 0.00 2.17
135 138 2.677337 ACAAGCAAACGCAAAAGCAAAT 59.323 36.364 0.00 0.00 0.00 2.32
146 149 6.567769 AACAAAGTTCATAACAAGCAAACG 57.432 33.333 0.00 0.00 0.00 3.60
147 150 6.682441 GCAAACAAAGTTCATAACAAGCAAAC 59.318 34.615 0.00 0.00 0.00 2.93
150 153 5.659463 AGCAAACAAAGTTCATAACAAGCA 58.341 33.333 0.00 0.00 0.00 3.91
199 202 2.765689 AGCAGACTCTAGCCATAGGT 57.234 50.000 0.00 0.00 0.00 3.08
221 224 7.766738 TGTCCTTTAGTACATCGCATCATTTAA 59.233 33.333 0.00 0.00 0.00 1.52
223 226 6.037172 GTGTCCTTTAGTACATCGCATCATTT 59.963 38.462 0.00 0.00 0.00 2.32
227 230 4.430007 TGTGTCCTTTAGTACATCGCATC 58.570 43.478 0.00 0.00 0.00 3.91
274 277 9.516314 CATCGACATATATGGTAACGATGTTAT 57.484 33.333 30.58 16.29 41.06 1.89
275 278 8.732531 TCATCGACATATATGGTAACGATGTTA 58.267 33.333 33.15 24.69 43.18 2.41
276 279 7.599171 TCATCGACATATATGGTAACGATGTT 58.401 34.615 33.15 18.55 43.18 2.71
277 280 7.153217 TCATCGACATATATGGTAACGATGT 57.847 36.000 33.15 18.96 43.18 3.06
278 281 8.634475 AATCATCGACATATATGGTAACGATG 57.366 34.615 31.63 31.63 43.52 3.84
279 282 8.466798 TGAATCATCGACATATATGGTAACGAT 58.533 33.333 21.53 21.53 42.51 3.73
280 283 7.822658 TGAATCATCGACATATATGGTAACGA 58.177 34.615 16.96 18.74 42.51 3.85
281 284 8.460831 TTGAATCATCGACATATATGGTAACG 57.539 34.615 16.96 14.90 42.51 3.18
285 288 9.159364 CTGAATTGAATCATCGACATATATGGT 57.841 33.333 16.96 2.89 0.00 3.55
286 289 9.374838 TCTGAATTGAATCATCGACATATATGG 57.625 33.333 16.96 0.39 0.00 2.74
288 291 9.933723 TGTCTGAATTGAATCATCGACATATAT 57.066 29.630 0.00 0.00 0.00 0.86
289 292 9.933723 ATGTCTGAATTGAATCATCGACATATA 57.066 29.630 15.57 0.00 36.51 0.86
290 293 8.843885 ATGTCTGAATTGAATCATCGACATAT 57.156 30.769 15.57 3.15 36.51 1.78
306 309 4.858850 TGTTCCTATGCCAATGTCTGAAT 58.141 39.130 0.00 0.00 0.00 2.57
309 312 5.125356 TGTATGTTCCTATGCCAATGTCTG 58.875 41.667 0.00 0.00 0.00 3.51
314 317 5.894298 TCTCTGTATGTTCCTATGCCAAT 57.106 39.130 0.00 0.00 0.00 3.16
322 325 4.584743 TGCATACGATCTCTGTATGTTCCT 59.415 41.667 16.03 0.00 46.91 3.36
324 327 6.152379 TCATGCATACGATCTCTGTATGTTC 58.848 40.000 16.03 5.89 46.91 3.18
349 352 4.823442 TCACAGCATCATGACTCACTTTTT 59.177 37.500 0.00 0.00 0.00 1.94
354 357 2.095532 GCTTCACAGCATCATGACTCAC 59.904 50.000 0.00 0.00 46.49 3.51
368 371 4.185394 TGTGTTCTTCGTTAAGCTTCACA 58.815 39.130 0.00 4.90 36.24 3.58
369 372 4.506654 TCTGTGTTCTTCGTTAAGCTTCAC 59.493 41.667 0.00 0.17 32.36 3.18
385 388 2.224621 ACAGCTGCTACCATTCTGTGTT 60.225 45.455 15.27 0.00 35.06 3.32
389 392 4.002982 TGTTTACAGCTGCTACCATTCTG 58.997 43.478 15.27 0.00 0.00 3.02
390 393 4.286297 TGTTTACAGCTGCTACCATTCT 57.714 40.909 15.27 0.00 0.00 2.40
403 406 2.695359 TCGGGCTAGCTTTGTTTACAG 58.305 47.619 15.72 0.00 0.00 2.74
407 410 1.534729 CCTTCGGGCTAGCTTTGTTT 58.465 50.000 15.72 0.00 0.00 2.83
440 443 9.419297 GAAAGGCGGAAATATAGTTTTTCTTTT 57.581 29.630 0.00 0.00 34.29 2.27
442 445 8.349568 AGAAAGGCGGAAATATAGTTTTTCTT 57.650 30.769 4.51 0.00 34.29 2.52
443 446 7.829706 AGAGAAAGGCGGAAATATAGTTTTTCT 59.170 33.333 8.51 8.51 35.69 2.52
444 447 7.910683 CAGAGAAAGGCGGAAATATAGTTTTTC 59.089 37.037 0.85 0.85 33.31 2.29
464 467 6.928492 GGGATGTGTTTTTATTTTGCAGAGAA 59.072 34.615 0.00 0.00 0.00 2.87
469 472 4.202264 ACGGGGATGTGTTTTTATTTTGCA 60.202 37.500 0.00 0.00 0.00 4.08
470 473 4.151512 CACGGGGATGTGTTTTTATTTTGC 59.848 41.667 0.00 0.00 35.12 3.68
493 497 9.220635 GGATGTGTTTTGCTTTCAAATAAAAAC 57.779 29.630 11.18 11.18 41.37 2.43
527 531 0.824109 TTCGTGGCTCACATAGAGGG 59.176 55.000 6.21 0.00 44.86 4.30
530 534 1.476891 GGTCTTCGTGGCTCACATAGA 59.523 52.381 6.21 4.84 33.40 1.98
548 552 1.370064 GGTACGTGCTGTTCCTGGT 59.630 57.895 3.01 0.00 35.28 4.00
573 577 0.808847 GGCGTATTTCCTGGTCGACC 60.809 60.000 28.17 28.17 0.00 4.79
578 582 0.255033 GGGAAGGCGTATTTCCTGGT 59.745 55.000 12.33 0.00 42.97 4.00
582 586 0.177373 AGTCGGGAAGGCGTATTTCC 59.823 55.000 6.27 6.27 42.73 3.13
597 601 7.428761 CCTCTAAAGAAGTACGTAAATCAGTCG 59.571 40.741 0.00 0.00 0.00 4.18
614 618 9.132923 CCCATATATAGCGTTATCCTCTAAAGA 57.867 37.037 0.00 0.00 0.00 2.52
619 623 5.778542 ACCCCATATATAGCGTTATCCTCT 58.221 41.667 0.00 0.00 0.00 3.69
621 625 8.562949 AATAACCCCATATATAGCGTTATCCT 57.437 34.615 0.00 0.00 0.00 3.24
645 649 1.210967 CCGAGGTTTGGCCAGGTATAA 59.789 52.381 5.11 0.00 40.61 0.98
646 650 0.834612 CCGAGGTTTGGCCAGGTATA 59.165 55.000 5.11 0.00 40.61 1.47
647 651 1.607612 CCGAGGTTTGGCCAGGTAT 59.392 57.895 5.11 0.00 40.61 2.73
648 652 2.598787 CCCGAGGTTTGGCCAGGTA 61.599 63.158 5.11 0.00 40.61 3.08
649 653 3.966543 CCCGAGGTTTGGCCAGGT 61.967 66.667 5.11 0.00 40.61 4.00
689 693 4.554036 GGCTCGGGCTTGGCTAGG 62.554 72.222 7.48 0.00 38.73 3.02
690 694 2.819984 TTTGGCTCGGGCTTGGCTAG 62.820 60.000 7.48 0.00 38.73 3.42
691 695 2.419011 TTTTGGCTCGGGCTTGGCTA 62.419 55.000 7.48 0.00 38.73 3.93
692 696 3.808218 TTTTGGCTCGGGCTTGGCT 62.808 57.895 7.48 0.00 38.73 4.75
693 697 2.866726 TTTTTGGCTCGGGCTTGGC 61.867 57.895 7.48 0.00 38.73 4.52
694 698 3.453988 TTTTTGGCTCGGGCTTGG 58.546 55.556 7.48 0.00 38.73 3.61
708 712 2.600470 GCTCGGGCCCAGGTTTTT 60.600 61.111 24.92 0.00 0.00 1.94
735 739 1.102978 CCAAAAACTAGGCCCGATGG 58.897 55.000 0.00 0.00 0.00 3.51
736 740 1.102978 CCCAAAAACTAGGCCCGATG 58.897 55.000 0.00 0.00 0.00 3.84
737 741 0.683179 GCCCAAAAACTAGGCCCGAT 60.683 55.000 0.00 0.00 41.00 4.18
738 742 1.303806 GCCCAAAAACTAGGCCCGA 60.304 57.895 0.00 0.00 41.00 5.14
739 743 3.284336 GCCCAAAAACTAGGCCCG 58.716 61.111 0.00 0.00 41.00 6.13
742 746 0.608130 CTTGGGCCCAAAAACTAGGC 59.392 55.000 36.16 0.00 46.37 3.93
743 747 0.608130 GCTTGGGCCCAAAAACTAGG 59.392 55.000 36.16 23.64 35.33 3.02
763 767 2.817470 CTTTTGCATGTTCGGGCCGG 62.817 60.000 27.98 10.74 0.00 6.13
764 768 1.444212 CTTTTGCATGTTCGGGCCG 60.444 57.895 22.51 22.51 0.00 6.13
765 769 1.737735 GCTTTTGCATGTTCGGGCC 60.738 57.895 0.00 0.00 46.58 5.80
766 770 3.860717 GCTTTTGCATGTTCGGGC 58.139 55.556 0.00 0.00 46.58 6.13
805 809 3.879180 TTTTCTGAAGGGGCCCGGC 62.879 63.158 18.95 14.05 0.00 6.13
806 810 1.977009 GTTTTCTGAAGGGGCCCGG 60.977 63.158 18.95 9.21 0.00 5.73
807 811 2.332654 CGTTTTCTGAAGGGGCCCG 61.333 63.158 18.95 2.19 0.00 6.13
808 812 1.977009 CCGTTTTCTGAAGGGGCCC 60.977 63.158 17.12 17.12 0.00 5.80
809 813 2.636412 GCCGTTTTCTGAAGGGGCC 61.636 63.158 14.01 0.00 34.54 5.80
810 814 1.460273 TTGCCGTTTTCTGAAGGGGC 61.460 55.000 16.65 16.65 40.88 5.80
811 815 1.036707 TTTGCCGTTTTCTGAAGGGG 58.963 50.000 6.42 3.66 0.00 4.79
812 816 2.880963 TTTTGCCGTTTTCTGAAGGG 57.119 45.000 0.00 0.00 0.00 3.95
813 817 4.209080 GTCATTTTTGCCGTTTTCTGAAGG 59.791 41.667 0.00 0.00 0.00 3.46
814 818 4.085619 CGTCATTTTTGCCGTTTTCTGAAG 60.086 41.667 0.00 0.00 0.00 3.02
815 819 3.794028 CGTCATTTTTGCCGTTTTCTGAA 59.206 39.130 0.00 0.00 0.00 3.02
816 820 3.367607 CGTCATTTTTGCCGTTTTCTGA 58.632 40.909 0.00 0.00 0.00 3.27
817 821 2.470999 CCGTCATTTTTGCCGTTTTCTG 59.529 45.455 0.00 0.00 0.00 3.02
818 822 2.544903 CCCGTCATTTTTGCCGTTTTCT 60.545 45.455 0.00 0.00 0.00 2.52
819 823 1.790043 CCCGTCATTTTTGCCGTTTTC 59.210 47.619 0.00 0.00 0.00 2.29
820 824 1.859383 CCCGTCATTTTTGCCGTTTT 58.141 45.000 0.00 0.00 0.00 2.43
821 825 0.598942 GCCCGTCATTTTTGCCGTTT 60.599 50.000 0.00 0.00 0.00 3.60
822 826 1.006688 GCCCGTCATTTTTGCCGTT 60.007 52.632 0.00 0.00 0.00 4.44
823 827 2.648454 GCCCGTCATTTTTGCCGT 59.352 55.556 0.00 0.00 0.00 5.68
824 828 2.126110 GGCCCGTCATTTTTGCCG 60.126 61.111 0.00 0.00 31.55 5.69
825 829 2.264480 GGGCCCGTCATTTTTGCC 59.736 61.111 5.69 0.00 41.42 4.52
826 830 2.126110 CGGGCCCGTCATTTTTGC 60.126 61.111 36.64 0.00 34.35 3.68
827 831 2.571231 CCGGGCCCGTCATTTTTG 59.429 61.111 40.52 20.46 37.81 2.44
828 832 2.678580 CCCGGGCCCGTCATTTTT 60.679 61.111 40.52 0.00 37.81 1.94
855 859 2.757980 TTTAAGACCGGTGGCCTGGC 62.758 60.000 14.63 11.05 0.00 4.85
856 860 0.250989 TTTTAAGACCGGTGGCCTGG 60.251 55.000 14.63 5.94 0.00 4.45
857 861 1.743394 GATTTTAAGACCGGTGGCCTG 59.257 52.381 14.63 0.00 0.00 4.85
858 862 1.633945 AGATTTTAAGACCGGTGGCCT 59.366 47.619 14.63 0.00 0.00 5.19
859 863 2.124277 AGATTTTAAGACCGGTGGCC 57.876 50.000 14.63 0.00 0.00 5.36
860 864 2.606272 CGTAGATTTTAAGACCGGTGGC 59.394 50.000 14.63 0.00 0.00 5.01
861 865 2.606272 GCGTAGATTTTAAGACCGGTGG 59.394 50.000 14.63 0.00 0.00 4.61
862 866 2.606272 GGCGTAGATTTTAAGACCGGTG 59.394 50.000 14.63 0.00 0.00 4.94
863 867 2.419159 GGGCGTAGATTTTAAGACCGGT 60.419 50.000 6.92 6.92 0.00 5.28
864 868 2.207590 GGGCGTAGATTTTAAGACCGG 58.792 52.381 0.00 0.00 0.00 5.28
866 870 3.121544 CTCGGGCGTAGATTTTAAGACC 58.878 50.000 0.00 0.00 0.00 3.85
867 871 2.538861 GCTCGGGCGTAGATTTTAAGAC 59.461 50.000 0.00 0.00 0.00 3.01
868 872 2.482490 GGCTCGGGCGTAGATTTTAAGA 60.482 50.000 0.00 0.00 39.81 2.10
869 873 1.865340 GGCTCGGGCGTAGATTTTAAG 59.135 52.381 0.00 0.00 39.81 1.85
870 874 1.473788 GGGCTCGGGCGTAGATTTTAA 60.474 52.381 0.00 0.00 39.81 1.52
871 875 0.105408 GGGCTCGGGCGTAGATTTTA 59.895 55.000 0.00 0.00 39.81 1.52
872 876 1.153229 GGGCTCGGGCGTAGATTTT 60.153 57.895 0.00 0.00 39.81 1.82
873 877 2.504519 GGGCTCGGGCGTAGATTT 59.495 61.111 0.00 0.00 39.81 2.17
874 878 3.912907 CGGGCTCGGGCGTAGATT 61.913 66.667 0.00 0.00 39.81 2.40
913 917 3.855503 AAAAAGCCCGACCCGACCC 62.856 63.158 0.00 0.00 0.00 4.46
914 918 2.281970 AAAAAGCCCGACCCGACC 60.282 61.111 0.00 0.00 0.00 4.79
915 919 2.674084 CGAAAAAGCCCGACCCGAC 61.674 63.158 0.00 0.00 0.00 4.79
916 920 2.357760 CGAAAAAGCCCGACCCGA 60.358 61.111 0.00 0.00 0.00 5.14
917 921 3.428282 CCGAAAAAGCCCGACCCG 61.428 66.667 0.00 0.00 0.00 5.28
918 922 3.060000 CCCGAAAAAGCCCGACCC 61.060 66.667 0.00 0.00 0.00 4.46
919 923 3.744719 GCCCGAAAAAGCCCGACC 61.745 66.667 0.00 0.00 0.00 4.79
920 924 3.744719 GGCCCGAAAAAGCCCGAC 61.745 66.667 0.00 0.00 43.76 4.79
926 930 3.747976 CAGCCCGGCCCGAAAAAG 61.748 66.667 3.71 0.00 0.00 2.27
944 948 2.512896 CCTAGACCTGGCCATGGC 59.487 66.667 29.47 29.47 41.06 4.40
945 949 2.455565 CCCCTAGACCTGGCCATGG 61.456 68.421 5.51 13.05 0.00 3.66
946 950 1.281925 AACCCCTAGACCTGGCCATG 61.282 60.000 5.51 6.06 0.00 3.66
947 951 0.345502 TAACCCCTAGACCTGGCCAT 59.654 55.000 5.51 0.00 0.00 4.40
948 952 0.345502 ATAACCCCTAGACCTGGCCA 59.654 55.000 4.71 4.71 0.00 5.36
949 953 2.410790 TATAACCCCTAGACCTGGCC 57.589 55.000 0.00 0.00 0.00 5.36
950 954 3.971971 TCTTTATAACCCCTAGACCTGGC 59.028 47.826 0.00 0.00 0.00 4.85
951 955 5.903589 TCTTCTTTATAACCCCTAGACCTGG 59.096 44.000 0.00 0.00 0.00 4.45
952 956 7.093024 TGTTCTTCTTTATAACCCCTAGACCTG 60.093 40.741 0.00 0.00 0.00 4.00
953 957 6.964086 TGTTCTTCTTTATAACCCCTAGACCT 59.036 38.462 0.00 0.00 0.00 3.85
954 958 7.046652 GTGTTCTTCTTTATAACCCCTAGACC 58.953 42.308 0.00 0.00 0.00 3.85
955 959 7.046652 GGTGTTCTTCTTTATAACCCCTAGAC 58.953 42.308 0.00 0.00 0.00 2.59
956 960 6.731919 TGGTGTTCTTCTTTATAACCCCTAGA 59.268 38.462 0.00 0.00 0.00 2.43
957 961 6.954232 TGGTGTTCTTCTTTATAACCCCTAG 58.046 40.000 0.00 0.00 0.00 3.02
958 962 6.502863 ACTGGTGTTCTTCTTTATAACCCCTA 59.497 38.462 0.00 0.00 0.00 3.53
959 963 5.312443 ACTGGTGTTCTTCTTTATAACCCCT 59.688 40.000 0.00 0.00 0.00 4.79
984 988 3.430931 GCTTTCGTTTTAGCACAACACA 58.569 40.909 0.00 0.00 37.35 3.72
991 996 1.167155 TGGCGGCTTTCGTTTTAGCA 61.167 50.000 11.43 0.00 41.72 3.49
1062 1067 2.427320 GCATGGCTCCGGCTGATA 59.573 61.111 0.00 0.00 38.73 2.15
1688 1694 2.097825 GCTTCTCAATGACCTGCCAAT 58.902 47.619 0.00 0.00 0.00 3.16
1806 1812 1.276622 AGTTATGGTGCTTCCCGACT 58.723 50.000 0.00 0.00 34.77 4.18
1950 1956 3.726557 ACCTGGAGATTTGAGCAATCA 57.273 42.857 0.00 0.00 43.63 2.57
2557 2563 6.892658 AATTAGCAACACACACATTCCTAA 57.107 33.333 0.00 0.00 0.00 2.69
2558 2564 6.892658 AAATTAGCAACACACACATTCCTA 57.107 33.333 0.00 0.00 0.00 2.94
2686 2708 7.930325 TGAACAATCTGTTTCAAAAATATGCCA 59.070 29.630 0.00 0.00 41.28 4.92
3006 3028 7.548196 TCAACCTACAAAGACAACAACTAAG 57.452 36.000 0.00 0.00 0.00 2.18
3009 3031 6.377146 ACAATCAACCTACAAAGACAACAACT 59.623 34.615 0.00 0.00 0.00 3.16
3010 3032 6.560711 ACAATCAACCTACAAAGACAACAAC 58.439 36.000 0.00 0.00 0.00 3.32
3012 3034 5.298276 GGACAATCAACCTACAAAGACAACA 59.702 40.000 0.00 0.00 0.00 3.33
3013 3035 5.298276 TGGACAATCAACCTACAAAGACAAC 59.702 40.000 0.00 0.00 0.00 3.32
3014 3036 5.441500 TGGACAATCAACCTACAAAGACAA 58.558 37.500 0.00 0.00 0.00 3.18
3015 3037 5.042463 TGGACAATCAACCTACAAAGACA 57.958 39.130 0.00 0.00 0.00 3.41
3016 3038 5.305585 TCTGGACAATCAACCTACAAAGAC 58.694 41.667 0.00 0.00 0.00 3.01
3017 3039 5.560722 TCTGGACAATCAACCTACAAAGA 57.439 39.130 0.00 0.00 0.00 2.52
3018 3040 6.633500 TTTCTGGACAATCAACCTACAAAG 57.367 37.500 0.00 0.00 0.00 2.77
3050 3072 3.368427 CGACCAACTCTGTGGATGTACAT 60.368 47.826 8.43 8.43 41.65 2.29
3177 3199 1.571460 CTGCTGACCTTGCGAACAC 59.429 57.895 0.00 0.00 0.00 3.32
3290 3312 7.309133 CCTCATGTCTAGCCTACTCATTCTAAG 60.309 44.444 0.00 0.00 0.00 2.18
3393 3422 8.548721 CGTCCGTAAAGAAATATAAGAGCATTT 58.451 33.333 0.00 0.00 0.00 2.32
3394 3423 7.170998 CCGTCCGTAAAGAAATATAAGAGCATT 59.829 37.037 0.00 0.00 0.00 3.56
3395 3424 6.645415 CCGTCCGTAAAGAAATATAAGAGCAT 59.355 38.462 0.00 0.00 0.00 3.79
3396 3425 5.981315 CCGTCCGTAAAGAAATATAAGAGCA 59.019 40.000 0.00 0.00 0.00 4.26
3397 3426 6.211515 TCCGTCCGTAAAGAAATATAAGAGC 58.788 40.000 0.00 0.00 0.00 4.09
3398 3427 7.378995 CACTCCGTCCGTAAAGAAATATAAGAG 59.621 40.741 0.00 0.00 0.00 2.85
3399 3428 7.067372 TCACTCCGTCCGTAAAGAAATATAAGA 59.933 37.037 0.00 0.00 0.00 2.10
3400 3429 7.198390 TCACTCCGTCCGTAAAGAAATATAAG 58.802 38.462 0.00 0.00 0.00 1.73
3401 3430 7.099266 TCACTCCGTCCGTAAAGAAATATAA 57.901 36.000 0.00 0.00 0.00 0.98
3402 3431 6.698008 TCACTCCGTCCGTAAAGAAATATA 57.302 37.500 0.00 0.00 0.00 0.86
3403 3432 5.587388 TCACTCCGTCCGTAAAGAAATAT 57.413 39.130 0.00 0.00 0.00 1.28
3404 3433 5.359009 AGATCACTCCGTCCGTAAAGAAATA 59.641 40.000 0.00 0.00 0.00 1.40
3405 3434 3.947910 TCACTCCGTCCGTAAAGAAAT 57.052 42.857 0.00 0.00 0.00 2.17
3406 3435 3.508793 AGATCACTCCGTCCGTAAAGAAA 59.491 43.478 0.00 0.00 0.00 2.52
3407 3436 3.087031 AGATCACTCCGTCCGTAAAGAA 58.913 45.455 0.00 0.00 0.00 2.52
3408 3437 2.719739 AGATCACTCCGTCCGTAAAGA 58.280 47.619 0.00 0.00 0.00 2.52
3409 3438 4.627611 TTAGATCACTCCGTCCGTAAAG 57.372 45.455 0.00 0.00 0.00 1.85
3410 3439 4.672542 CGTTTAGATCACTCCGTCCGTAAA 60.673 45.833 0.00 0.00 0.00 2.01
3411 3440 3.181507 CGTTTAGATCACTCCGTCCGTAA 60.182 47.826 0.00 0.00 0.00 3.18
3412 3441 2.352651 CGTTTAGATCACTCCGTCCGTA 59.647 50.000 0.00 0.00 0.00 4.02
3413 3442 1.131883 CGTTTAGATCACTCCGTCCGT 59.868 52.381 0.00 0.00 0.00 4.69
3414 3443 1.823828 CGTTTAGATCACTCCGTCCG 58.176 55.000 0.00 0.00 0.00 4.79
3415 3444 1.134560 AGCGTTTAGATCACTCCGTCC 59.865 52.381 0.00 0.00 0.00 4.79
3416 3445 2.097791 AGAGCGTTTAGATCACTCCGTC 59.902 50.000 0.00 0.00 37.82 4.79
3417 3446 2.093106 AGAGCGTTTAGATCACTCCGT 58.907 47.619 0.00 0.00 37.82 4.69
3418 3447 2.853731 AGAGCGTTTAGATCACTCCG 57.146 50.000 0.00 0.00 37.82 4.63
3419 3448 8.819643 AAATATAAGAGCGTTTAGATCACTCC 57.180 34.615 0.00 0.00 37.82 3.85
3420 3449 9.685828 AGAAATATAAGAGCGTTTAGATCACTC 57.314 33.333 0.00 0.00 37.82 3.51
3515 3545 7.389607 TGTTCCACTTTAGGCTATAACAAAGAC 59.610 37.037 12.40 2.72 33.29 3.01
3530 3560 3.135712 TCTGCTCCAGTTGTTCCACTTTA 59.864 43.478 0.00 0.00 32.61 1.85
3839 3869 2.309528 TATCACGATTGACCTGTGGC 57.690 50.000 0.00 0.00 33.38 5.01
4015 4059 0.108186 TACAAGGAGCATGCCGTGAG 60.108 55.000 15.66 4.72 39.40 3.51
4019 4063 1.506493 GAGATACAAGGAGCATGCCG 58.494 55.000 15.66 0.30 0.00 5.69
4074 4118 6.891908 ACAGATTAGCATAACCCACAGAAAAT 59.108 34.615 0.00 0.00 0.00 1.82
4210 4254 1.749258 GGCTAAAGACGCAAGGGGG 60.749 63.158 0.00 0.00 46.39 5.40
4272 4316 7.852945 GGTATGAATCATAAAAGAAGCTGAACG 59.147 37.037 4.30 0.00 0.00 3.95
4315 4359 7.701539 AATTATGTGAGTTTCAAGCCACATA 57.298 32.000 0.00 0.00 45.21 2.29
4842 4905 7.227711 TGTTTCTTTTAAAAGGGCCAAATAAGC 59.772 33.333 24.20 12.68 36.67 3.09
4844 4907 9.061435 CATGTTTCTTTTAAAAGGGCCAAATAA 57.939 29.630 24.20 8.75 36.67 1.40
4858 4921 7.610865 CCAAATAGGGAAGCATGTTTCTTTTA 58.389 34.615 19.93 11.26 0.00 1.52
4862 4925 3.448660 GCCAAATAGGGAAGCATGTTTCT 59.551 43.478 19.93 5.87 38.09 2.52
4863 4926 3.430790 GGCCAAATAGGGAAGCATGTTTC 60.431 47.826 13.43 13.43 38.09 2.78
4918 5104 5.799936 CGGAAGCATATATTTTAAATGGCCG 59.200 40.000 0.00 0.00 0.00 6.13
4942 5128 8.756486 TTTTATAAAGGGCTAGGACCAAATAC 57.244 34.615 0.00 0.00 29.21 1.89
5126 5312 4.404394 TCCGGTTGTAGATGCTCTGATAAA 59.596 41.667 0.00 0.00 0.00 1.40
5163 5349 1.678598 CCCACACGCGTATAAGGGGA 61.679 60.000 22.55 0.00 36.14 4.81
5166 5352 1.153529 TGCCCACACGCGTATAAGG 60.154 57.895 13.44 12.05 0.00 2.69
5198 5384 2.356278 GACATGAGGGGCCAAGCA 59.644 61.111 4.39 0.00 0.00 3.91
5244 5430 3.347216 ACATTTGAGGTGTGTGGCTATC 58.653 45.455 0.00 0.00 0.00 2.08
5246 5432 2.949177 ACATTTGAGGTGTGTGGCTA 57.051 45.000 0.00 0.00 0.00 3.93
5283 5469 7.164122 GCTCTAGGATCCACATGAATGAATTA 58.836 38.462 15.82 0.00 0.00 1.40
5321 5507 3.773860 TGCTTTGTCACGTTGTTGAAT 57.226 38.095 0.00 0.00 0.00 2.57
5350 5536 3.313012 TGACCGGACTGTTGAACTATG 57.687 47.619 9.46 0.00 0.00 2.23
5362 5548 1.173043 TCATTTTGGCATGACCGGAC 58.827 50.000 9.46 1.07 43.94 4.79
5364 5550 2.739885 TTTCATTTTGGCATGACCGG 57.260 45.000 0.00 0.00 43.94 5.28
5379 5565 3.127589 TCACGCTCGAAGTTGAATTTCA 58.872 40.909 1.44 0.00 0.00 2.69
5389 5575 1.203928 GTGATCCATCACGCTCGAAG 58.796 55.000 3.96 0.00 46.46 3.79
5416 5602 1.803289 CGTCTGGCGAGTGATCTGA 59.197 57.895 0.00 0.00 44.77 3.27
5418 5604 2.492090 GCGTCTGGCGAGTGATCT 59.508 61.111 5.55 0.00 44.77 2.75
5452 5642 1.668826 AGCAGGGGTAAGGATGACAA 58.331 50.000 0.00 0.00 0.00 3.18
5454 5644 1.473434 CGAAGCAGGGGTAAGGATGAC 60.473 57.143 0.00 0.00 0.00 3.06
5469 5659 1.208614 CAGGCAAAGCAGTCGAAGC 59.791 57.895 3.06 3.06 0.00 3.86
5472 5662 1.301716 GTCCAGGCAAAGCAGTCGA 60.302 57.895 0.00 0.00 0.00 4.20
5539 5729 0.535102 GCCCATAGGAACCGGTGATG 60.535 60.000 8.52 9.91 33.47 3.07
5541 5731 2.727392 CGCCCATAGGAACCGGTGA 61.727 63.158 8.52 0.00 33.47 4.02
5542 5732 2.203015 CGCCCATAGGAACCGGTG 60.203 66.667 8.52 0.00 33.47 4.94
5543 5733 2.364579 TCGCCCATAGGAACCGGT 60.365 61.111 0.00 0.00 33.47 5.28
5611 5801 3.123620 CACAGAGGCTGCTTCGGC 61.124 66.667 11.48 0.00 42.19 5.54
5624 5814 3.663176 CCCACAACGCTGCCACAG 61.663 66.667 0.00 0.00 34.12 3.66
5630 5820 4.619227 ACCCGTCCCACAACGCTG 62.619 66.667 0.00 0.00 41.26 5.18
5631 5821 3.868985 AACCCGTCCCACAACGCT 61.869 61.111 0.00 0.00 41.26 5.07
5635 5825 2.511900 GACCAACCCGTCCCACAA 59.488 61.111 0.00 0.00 0.00 3.33
5647 5837 1.672854 CCGGCCTAGATGTCGACCAA 61.673 60.000 14.12 0.00 0.00 3.67
5666 5856 4.424711 TCGTTGGCCCCCATCTGC 62.425 66.667 0.00 0.00 31.53 4.26
5675 5865 1.519455 CTCATCCTCGTCGTTGGCC 60.519 63.158 0.00 0.00 0.00 5.36
5679 5869 1.038130 CCTCCCTCATCCTCGTCGTT 61.038 60.000 0.00 0.00 0.00 3.85
5683 5873 0.397816 CCTTCCTCCCTCATCCTCGT 60.398 60.000 0.00 0.00 0.00 4.18
5698 5888 2.143925 CTTTGTTGTCGTCCTCCCTTC 58.856 52.381 0.00 0.00 0.00 3.46
5704 5894 2.884639 CCATTTCCTTTGTTGTCGTCCT 59.115 45.455 0.00 0.00 0.00 3.85
5712 5902 2.938838 TCGTCCACCATTTCCTTTGTT 58.061 42.857 0.00 0.00 0.00 2.83
5713 5903 2.621526 GTTCGTCCACCATTTCCTTTGT 59.378 45.455 0.00 0.00 0.00 2.83
5727 5917 0.109226 CTCTCTTCCCGTGTTCGTCC 60.109 60.000 0.00 0.00 35.01 4.79
5731 5921 1.734465 CATTGCTCTCTTCCCGTGTTC 59.266 52.381 0.00 0.00 0.00 3.18
5749 5939 2.291800 CCCTCAGATTCACCAAACCCAT 60.292 50.000 0.00 0.00 0.00 4.00
5763 5953 5.127519 CCATAAATTGCACAAATCCCTCAGA 59.872 40.000 0.00 0.00 0.00 3.27
5768 5958 4.190772 CCACCATAAATTGCACAAATCCC 58.809 43.478 0.00 0.00 0.00 3.85
5780 5971 1.063717 CAGCCTGACCCCACCATAAAT 60.064 52.381 0.00 0.00 0.00 1.40
5788 5979 3.640407 GCAGACAGCCTGACCCCA 61.640 66.667 0.00 0.00 45.78 4.96
5800 5991 2.462456 TCAGTCACATTGGAGCAGAC 57.538 50.000 0.00 0.00 0.00 3.51
5805 5996 0.376152 GCGCATCAGTCACATTGGAG 59.624 55.000 0.30 0.00 0.00 3.86
5811 6002 2.046988 CCAGGCGCATCAGTCACA 60.047 61.111 10.83 0.00 0.00 3.58
5817 6008 2.244117 GAGAAGACCCAGGCGCATCA 62.244 60.000 10.83 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.