Multiple sequence alignment - TraesCS2A01G221500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G221500 chr2A 100.000 3463 0 0 1 3463 211458934 211462396 0.000000e+00 6396.0
1 TraesCS2A01G221500 chr2A 82.167 1458 187 50 1003 2414 210751198 210749768 0.000000e+00 1184.0
2 TraesCS2A01G221500 chr2A 82.622 984 142 21 1001 1969 211482505 211483474 0.000000e+00 843.0
3 TraesCS2A01G221500 chr2A 88.525 305 35 0 2077 2381 211694085 211693781 1.520000e-98 370.0
4 TraesCS2A01G221500 chr2D 92.778 2174 73 34 554 2714 195994731 195996833 0.000000e+00 3068.0
5 TraesCS2A01G221500 chr2D 81.968 1453 199 44 1003 2414 195423283 195421853 0.000000e+00 1173.0
6 TraesCS2A01G221500 chr2D 82.640 985 136 23 1001 1969 196001519 196002484 0.000000e+00 839.0
7 TraesCS2A01G221500 chr2D 82.996 494 82 2 1477 1969 196131006 196130514 2.450000e-121 446.0
8 TraesCS2A01G221500 chr2D 85.876 354 50 0 2062 2415 196002529 196002882 9.070000e-101 377.0
9 TraesCS2A01G221500 chr2D 90.875 263 18 4 2970 3227 195998589 195998850 7.110000e-92 348.0
10 TraesCS2A01G221500 chr2D 89.100 211 17 2 99 309 195991761 195991965 1.230000e-64 257.0
11 TraesCS2A01G221500 chr2D 88.652 141 8 2 2842 2974 195997190 195997330 7.690000e-37 165.0
12 TraesCS2A01G221500 chr2D 95.556 90 3 1 2727 2816 195996818 195996906 3.600000e-30 143.0
13 TraesCS2A01G221500 chr2D 75.828 302 58 13 1038 1327 196131416 196131118 4.660000e-29 139.0
14 TraesCS2A01G221500 chr2D 85.039 127 16 3 1037 1163 196225042 196224919 3.630000e-25 126.0
15 TraesCS2A01G221500 chr2D 90.909 77 7 0 307 383 158126954 158127030 1.700000e-18 104.0
16 TraesCS2A01G221500 chr4A 89.129 1481 131 20 972 2426 607309134 607310610 0.000000e+00 1816.0
17 TraesCS2A01G221500 chr4A 88.811 143 12 2 3221 3362 309480627 309480766 4.600000e-39 172.0
18 TraesCS2A01G221500 chrUn 88.769 1487 137 10 972 2429 67470716 67469231 0.000000e+00 1794.0
19 TraesCS2A01G221500 chr5D 88.739 1483 129 15 972 2429 565786829 565785360 0.000000e+00 1779.0
20 TraesCS2A01G221500 chr5D 88.889 144 11 3 3221 3362 503301315 503301175 4.600000e-39 172.0
21 TraesCS2A01G221500 chr5D 94.000 100 6 0 3352 3451 12938345 12938246 5.990000e-33 152.0
22 TraesCS2A01G221500 chr5D 93.814 97 6 0 3352 3448 6266726 6266822 2.790000e-31 147.0
23 TraesCS2A01G221500 chr5D 93.000 100 7 0 3352 3451 503301158 503301059 2.790000e-31 147.0
24 TraesCS2A01G221500 chr2B 81.617 1447 196 44 1003 2413 251771573 251770161 0.000000e+00 1134.0
25 TraesCS2A01G221500 chr5B 89.646 396 23 2 972 1349 707360064 707359669 4.020000e-134 488.0
26 TraesCS2A01G221500 chr5B 87.286 409 49 1 2024 2429 707359649 707359241 6.770000e-127 464.0
27 TraesCS2A01G221500 chr5B 87.136 412 50 1 2018 2426 707391216 707391627 6.770000e-127 464.0
28 TraesCS2A01G221500 chr5B 87.654 81 9 1 307 386 696341252 696341172 3.680000e-15 93.5
29 TraesCS2A01G221500 chr7A 85.241 332 49 0 2072 2403 680628885 680628554 3.310000e-90 342.0
30 TraesCS2A01G221500 chr6B 90.909 143 9 2 3221 3362 201453487 201453348 4.560000e-44 189.0
31 TraesCS2A01G221500 chr6B 89.610 77 8 0 307 383 560621294 560621218 7.910000e-17 99.0
32 TraesCS2A01G221500 chr6A 90.210 143 10 2 3221 3362 592504539 592504400 2.120000e-42 183.0
33 TraesCS2A01G221500 chr6A 84.270 89 10 3 307 392 10704019 10703932 2.210000e-12 84.2
34 TraesCS2A01G221500 chr3B 90.210 143 10 2 3221 3362 101910771 101910910 2.120000e-42 183.0
35 TraesCS2A01G221500 chr3A 90.210 143 8 3 3221 3362 69384307 69384444 7.630000e-42 182.0
36 TraesCS2A01G221500 chr4D 88.811 143 12 2 3221 3362 207037499 207037638 4.600000e-39 172.0
37 TraesCS2A01G221500 chr4D 93.814 97 6 0 3352 3448 207037655 207037751 2.790000e-31 147.0
38 TraesCS2A01G221500 chr1B 89.286 140 11 2 3224 3362 272390853 272390989 4.600000e-39 172.0
39 TraesCS2A01G221500 chr1B 81.771 192 35 0 2074 2265 675790249 675790058 9.950000e-36 161.0
40 TraesCS2A01G221500 chr1B 85.897 78 8 2 307 383 19038757 19038832 2.870000e-11 80.5
41 TraesCS2A01G221500 chr1B 83.529 85 12 2 307 390 497823406 497823323 1.030000e-10 78.7
42 TraesCS2A01G221500 chr1D 88.811 143 11 3 3221 3362 246421894 246421756 1.650000e-38 171.0
43 TraesCS2A01G221500 chr1D 93.814 97 6 0 3352 3448 51862818 51862914 2.790000e-31 147.0
44 TraesCS2A01G221500 chr1D 93.000 100 7 0 3352 3451 246421739 246421640 2.790000e-31 147.0
45 TraesCS2A01G221500 chr1D 93.000 100 7 0 3352 3451 254444290 254444191 2.790000e-31 147.0
46 TraesCS2A01G221500 chr1D 89.744 78 7 1 307 383 71640561 71640638 7.910000e-17 99.0
47 TraesCS2A01G221500 chr1A 76.677 313 66 6 2074 2381 582694185 582693875 2.140000e-37 167.0
48 TraesCS2A01G221500 chr7D 93.000 100 7 0 3352 3451 231616687 231616588 2.790000e-31 147.0
49 TraesCS2A01G221500 chr6D 93.814 97 6 0 3352 3448 436677105 436677201 2.790000e-31 147.0
50 TraesCS2A01G221500 chr3D 94.737 57 3 0 303 359 356633015 356633071 4.760000e-14 89.8
51 TraesCS2A01G221500 chr7B 88.158 76 6 2 309 383 498641014 498641087 1.710000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G221500 chr2A 211458934 211462396 3462 False 6396.000000 6396 100.000000 1 3463 1 chr2A.!!$F1 3462
1 TraesCS2A01G221500 chr2A 210749768 210751198 1430 True 1184.000000 1184 82.167000 1003 2414 1 chr2A.!!$R1 1411
2 TraesCS2A01G221500 chr2A 211482505 211483474 969 False 843.000000 843 82.622000 1001 1969 1 chr2A.!!$F2 968
3 TraesCS2A01G221500 chr2D 195421853 195423283 1430 True 1173.000000 1173 81.968000 1003 2414 1 chr2D.!!$R1 1411
4 TraesCS2A01G221500 chr2D 195991761 196002882 11121 False 742.428571 3068 89.353857 99 3227 7 chr2D.!!$F2 3128
5 TraesCS2A01G221500 chr2D 196130514 196131416 902 True 292.500000 446 79.412000 1038 1969 2 chr2D.!!$R3 931
6 TraesCS2A01G221500 chr4A 607309134 607310610 1476 False 1816.000000 1816 89.129000 972 2426 1 chr4A.!!$F2 1454
7 TraesCS2A01G221500 chrUn 67469231 67470716 1485 True 1794.000000 1794 88.769000 972 2429 1 chrUn.!!$R1 1457
8 TraesCS2A01G221500 chr5D 565785360 565786829 1469 True 1779.000000 1779 88.739000 972 2429 1 chr5D.!!$R2 1457
9 TraesCS2A01G221500 chr2B 251770161 251771573 1412 True 1134.000000 1134 81.617000 1003 2413 1 chr2B.!!$R1 1410
10 TraesCS2A01G221500 chr5B 707359241 707360064 823 True 476.000000 488 88.466000 972 2429 2 chr5B.!!$R2 1457


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 347 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.0 0.0 0.0 0.0 4.02 F
799 3399 0.042188 CGTGCTCGTGTTCAGTTTGG 60.042 55.0 0.0 0.0 0.0 3.28 F
903 3520 0.970937 TACAGAAGGAGGGACGCTGG 60.971 60.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1982 4642 0.179230 CGTCGTCGTCTGTGTAGGTC 60.179 60.000 0.00 0.0 0.00 3.85 R
2010 4682 1.294798 CGTCGTACTCGTCGTCGTC 60.295 63.158 1.33 0.0 41.73 4.20 R
2848 5809 0.035820 CAACCAGCGGGGCTTTAGTA 60.036 55.000 8.08 0.0 42.05 1.82 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.539152 GCGGATTGCGGCATTATG 57.461 55.556 2.28 0.00 39.84 1.90
72 73 1.081242 GCGGATTGCGGCATTATGG 60.081 57.895 2.28 0.00 39.84 2.74
73 74 1.081242 CGGATTGCGGCATTATGGC 60.081 57.895 8.82 8.82 39.85 4.40
85 86 5.186996 GGCATTATGGCGATATTTATGGG 57.813 43.478 2.34 0.00 31.79 4.00
86 87 4.887071 GGCATTATGGCGATATTTATGGGA 59.113 41.667 2.34 0.00 31.79 4.37
87 88 5.359576 GGCATTATGGCGATATTTATGGGAA 59.640 40.000 2.34 0.00 31.79 3.97
88 89 6.460123 GGCATTATGGCGATATTTATGGGAAG 60.460 42.308 2.34 0.00 31.79 3.46
89 90 6.095440 GCATTATGGCGATATTTATGGGAAGT 59.905 38.462 0.00 0.00 0.00 3.01
90 91 7.362920 GCATTATGGCGATATTTATGGGAAGTT 60.363 37.037 0.00 0.00 0.00 2.66
91 92 5.964958 ATGGCGATATTTATGGGAAGTTG 57.035 39.130 0.00 0.00 0.00 3.16
92 93 4.141287 TGGCGATATTTATGGGAAGTTGG 58.859 43.478 0.00 0.00 0.00 3.77
93 94 3.506067 GGCGATATTTATGGGAAGTTGGG 59.494 47.826 0.00 0.00 0.00 4.12
94 95 3.506067 GCGATATTTATGGGAAGTTGGGG 59.494 47.826 0.00 0.00 0.00 4.96
95 96 3.506067 CGATATTTATGGGAAGTTGGGGC 59.494 47.826 0.00 0.00 0.00 5.80
96 97 1.775385 ATTTATGGGAAGTTGGGGCG 58.225 50.000 0.00 0.00 0.00 6.13
97 98 0.699399 TTTATGGGAAGTTGGGGCGA 59.301 50.000 0.00 0.00 0.00 5.54
113 114 3.367395 GGGGCGAAAAATCCTTCTCAAAG 60.367 47.826 0.00 0.00 0.00 2.77
119 120 6.963805 GCGAAAAATCCTTCTCAAAGACTATG 59.036 38.462 0.00 0.00 34.14 2.23
164 165 8.512966 TGCCTAATACTAAAATGTATTGCACA 57.487 30.769 9.36 0.00 41.51 4.57
180 181 9.729281 TGTATTGCACATATGAGATCAATATGT 57.271 29.630 20.30 20.30 40.82 2.29
219 220 7.924412 ATATTGCCTAATATTAGCATGCATTGC 59.076 33.333 21.98 11.35 42.39 3.56
293 294 6.639563 ACTGTATGTATTAGTGTGTGATGCA 58.360 36.000 0.00 0.00 0.00 3.96
314 315 9.956720 GATGCAATTAATATGTTATCATAGGGC 57.043 33.333 0.00 0.00 39.49 5.19
315 316 9.705103 ATGCAATTAATATGTTATCATAGGGCT 57.295 29.630 0.00 0.00 39.49 5.19
320 321 8.927059 TTAATATGTTATCATAGGGCTAGGGT 57.073 34.615 0.00 0.00 39.49 4.34
321 322 6.814954 ATATGTTATCATAGGGCTAGGGTG 57.185 41.667 0.00 0.00 39.49 4.61
322 323 3.936461 TGTTATCATAGGGCTAGGGTGT 58.064 45.455 0.00 0.00 0.00 4.16
323 324 3.646162 TGTTATCATAGGGCTAGGGTGTG 59.354 47.826 0.00 0.00 0.00 3.82
324 325 1.059913 ATCATAGGGCTAGGGTGTGC 58.940 55.000 0.00 0.00 0.00 4.57
325 326 1.069765 CATAGGGCTAGGGTGTGCG 59.930 63.158 0.00 0.00 0.00 5.34
326 327 1.382695 ATAGGGCTAGGGTGTGCGT 60.383 57.895 0.00 0.00 0.00 5.24
327 328 1.686325 ATAGGGCTAGGGTGTGCGTG 61.686 60.000 0.00 0.00 0.00 5.34
328 329 4.016706 GGGCTAGGGTGTGCGTGT 62.017 66.667 0.00 0.00 0.00 4.49
329 330 2.742372 GGCTAGGGTGTGCGTGTG 60.742 66.667 0.00 0.00 0.00 3.82
330 331 2.030562 GCTAGGGTGTGCGTGTGT 59.969 61.111 0.00 0.00 0.00 3.72
331 332 2.317609 GCTAGGGTGTGCGTGTGTG 61.318 63.158 0.00 0.00 0.00 3.82
332 333 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
335 336 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
336 337 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
337 338 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
338 339 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
339 340 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
340 341 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
341 342 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
342 343 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
343 344 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
344 345 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
345 346 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
346 347 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
347 348 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
348 349 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
349 350 1.479323 GTGCGTTCATAGGGGTGAGTA 59.521 52.381 0.00 0.00 0.00 2.59
350 351 2.102588 GTGCGTTCATAGGGGTGAGTAT 59.897 50.000 0.00 0.00 0.00 2.12
351 352 3.319972 GTGCGTTCATAGGGGTGAGTATA 59.680 47.826 0.00 0.00 0.00 1.47
352 353 4.021368 GTGCGTTCATAGGGGTGAGTATAT 60.021 45.833 0.00 0.00 0.00 0.86
353 354 4.021456 TGCGTTCATAGGGGTGAGTATATG 60.021 45.833 0.00 0.00 0.00 1.78
354 355 4.495422 CGTTCATAGGGGTGAGTATATGC 58.505 47.826 0.00 0.00 0.00 3.14
355 356 4.495422 GTTCATAGGGGTGAGTATATGCG 58.505 47.826 0.00 0.00 0.00 4.73
356 357 2.496070 TCATAGGGGTGAGTATATGCGC 59.504 50.000 0.00 0.00 0.00 6.09
357 358 2.003937 TAGGGGTGAGTATATGCGCA 57.996 50.000 14.96 14.96 0.00 6.09
358 359 1.352083 AGGGGTGAGTATATGCGCAT 58.648 50.000 28.23 28.23 0.00 4.73
359 360 1.699634 AGGGGTGAGTATATGCGCATT 59.300 47.619 30.42 18.08 0.00 3.56
360 361 2.106511 AGGGGTGAGTATATGCGCATTT 59.893 45.455 30.42 23.29 0.00 2.32
361 362 2.226437 GGGGTGAGTATATGCGCATTTG 59.774 50.000 30.42 0.00 0.00 2.32
362 363 2.350772 GGGTGAGTATATGCGCATTTGC 60.351 50.000 30.42 23.57 37.78 3.68
376 377 4.707210 GCATTTGCGTTTGTATTGTGTT 57.293 36.364 0.00 0.00 0.00 3.32
377 378 4.687047 GCATTTGCGTTTGTATTGTGTTC 58.313 39.130 0.00 0.00 0.00 3.18
378 379 4.208047 GCATTTGCGTTTGTATTGTGTTCA 59.792 37.500 0.00 0.00 0.00 3.18
379 380 5.276584 GCATTTGCGTTTGTATTGTGTTCAA 60.277 36.000 0.00 0.00 37.98 2.69
380 381 6.700020 CATTTGCGTTTGTATTGTGTTCAAA 58.300 32.000 0.00 0.00 37.11 2.69
381 382 6.706055 TTTGCGTTTGTATTGTGTTCAAAA 57.294 29.167 0.00 0.00 37.11 2.44
382 383 6.706055 TTGCGTTTGTATTGTGTTCAAAAA 57.294 29.167 0.00 0.00 37.11 1.94
383 384 6.893958 TGCGTTTGTATTGTGTTCAAAAAT 57.106 29.167 0.00 0.00 37.11 1.82
409 410 8.896320 AATATTAAGGTGCATTGTACATACGA 57.104 30.769 7.21 0.00 0.00 3.43
410 411 6.844696 ATTAAGGTGCATTGTACATACGAG 57.155 37.500 7.21 0.00 0.00 4.18
466 467 1.024271 GCACCAGCTTGAACAGACAA 58.976 50.000 0.00 0.00 37.91 3.18
482 484 6.604735 ACAGACAATTCCTATATTCGCAAC 57.395 37.500 0.00 0.00 0.00 4.17
484 486 6.258727 ACAGACAATTCCTATATTCGCAACAG 59.741 38.462 0.00 0.00 0.00 3.16
499 501 4.156922 TCGCAACAGGAAAAGAAAAACAGA 59.843 37.500 0.00 0.00 0.00 3.41
504 506 6.451064 ACAGGAAAAGAAAAACAGACGATT 57.549 33.333 0.00 0.00 0.00 3.34
506 508 5.915196 CAGGAAAAGAAAAACAGACGATTCC 59.085 40.000 0.00 0.00 35.23 3.01
516 518 2.223829 ACAGACGATTCCTATTGCTCCG 60.224 50.000 0.00 0.00 0.00 4.63
521 523 2.608261 CGATTCCTATTGCTCCGACCTC 60.608 54.545 0.00 0.00 0.00 3.85
543 567 3.311871 CCGATCAAGAGCTTCCTGATTTG 59.688 47.826 7.36 4.64 0.00 2.32
547 571 6.569226 CGATCAAGAGCTTCCTGATTTGTTTT 60.569 38.462 7.36 0.00 0.00 2.43
548 572 6.469782 TCAAGAGCTTCCTGATTTGTTTTT 57.530 33.333 0.00 0.00 0.00 1.94
549 573 7.581213 TCAAGAGCTTCCTGATTTGTTTTTA 57.419 32.000 0.00 0.00 0.00 1.52
551 575 6.581171 AGAGCTTCCTGATTTGTTTTTAGG 57.419 37.500 0.00 0.00 0.00 2.69
552 576 5.478332 AGAGCTTCCTGATTTGTTTTTAGGG 59.522 40.000 0.00 0.00 0.00 3.53
569 3168 6.388619 TTTAGGGTAAGAGCTTCCTGAATT 57.611 37.500 0.00 0.00 0.00 2.17
575 3174 5.938125 GGTAAGAGCTTCCTGAATTGTGTAA 59.062 40.000 0.00 0.00 0.00 2.41
583 3182 4.566004 TCCTGAATTGTGTAAAGTCCTCG 58.434 43.478 0.00 0.00 0.00 4.63
595 3194 2.357034 TCCTCGGTTGCGTGCTTC 60.357 61.111 0.00 0.00 0.00 3.86
611 3210 1.284982 CTTCGTGAACCGTCCAGCTG 61.285 60.000 6.78 6.78 37.94 4.24
646 3246 2.055838 TGAAGTCGGTTCGTTTCATCG 58.944 47.619 0.00 0.00 38.09 3.84
649 3249 0.093026 GTCGGTTCGTTTCATCGCAG 59.907 55.000 0.00 0.00 0.00 5.18
655 3255 3.059188 GGTTCGTTTCATCGCAGAGAAAA 60.059 43.478 0.00 0.00 43.63 2.29
656 3256 4.523813 GTTCGTTTCATCGCAGAGAAAAA 58.476 39.130 0.00 0.00 43.63 1.94
737 3337 8.868522 TCCTTAAATCTTGCTATAATCCATGG 57.131 34.615 4.97 4.97 0.00 3.66
738 3338 7.394359 TCCTTAAATCTTGCTATAATCCATGGC 59.606 37.037 6.96 0.00 41.34 4.40
743 3343 8.970859 AATCTTGCTATAATCCATGGCTATAC 57.029 34.615 6.96 6.60 41.51 1.47
756 3356 5.829924 CCATGGCTATACTGGAAAATTGAGT 59.170 40.000 0.00 0.00 31.38 3.41
763 3363 7.336931 GCTATACTGGAAAATTGAGTTCTTGGA 59.663 37.037 0.00 0.00 0.00 3.53
792 3392 2.645510 CCGTGTCGTGCTCGTGTTC 61.646 63.158 8.17 0.00 38.33 3.18
799 3399 0.042188 CGTGCTCGTGTTCAGTTTGG 60.042 55.000 0.00 0.00 0.00 3.28
800 3400 1.295792 GTGCTCGTGTTCAGTTTGGA 58.704 50.000 0.00 0.00 0.00 3.53
801 3401 1.668751 GTGCTCGTGTTCAGTTTGGAA 59.331 47.619 0.00 0.00 0.00 3.53
802 3402 2.096819 GTGCTCGTGTTCAGTTTGGAAA 59.903 45.455 0.00 0.00 0.00 3.13
803 3403 2.354510 TGCTCGTGTTCAGTTTGGAAAG 59.645 45.455 0.00 0.00 0.00 2.62
804 3404 2.354821 GCTCGTGTTCAGTTTGGAAAGT 59.645 45.455 0.00 0.00 0.00 2.66
805 3405 3.181500 GCTCGTGTTCAGTTTGGAAAGTT 60.181 43.478 0.00 0.00 0.00 2.66
806 3406 4.674362 GCTCGTGTTCAGTTTGGAAAGTTT 60.674 41.667 0.00 0.00 0.00 2.66
807 3407 5.379732 TCGTGTTCAGTTTGGAAAGTTTT 57.620 34.783 0.00 0.00 0.00 2.43
808 3408 5.774630 TCGTGTTCAGTTTGGAAAGTTTTT 58.225 33.333 0.00 0.00 0.00 1.94
867 3467 2.950433 TCCGCGTAGAACCTGTTAAAG 58.050 47.619 4.92 0.00 0.00 1.85
868 3468 1.392510 CCGCGTAGAACCTGTTAAAGC 59.607 52.381 4.92 0.00 0.00 3.51
869 3469 2.334838 CGCGTAGAACCTGTTAAAGCT 58.665 47.619 0.00 0.00 0.00 3.74
871 3471 2.415512 GCGTAGAACCTGTTAAAGCTGG 59.584 50.000 0.00 0.00 0.00 4.85
872 3472 3.863400 GCGTAGAACCTGTTAAAGCTGGA 60.863 47.826 0.00 0.00 0.00 3.86
873 3473 4.504858 CGTAGAACCTGTTAAAGCTGGAT 58.495 43.478 0.00 0.00 0.00 3.41
875 3475 3.956744 AGAACCTGTTAAAGCTGGATCC 58.043 45.455 4.20 4.20 32.41 3.36
876 3476 2.403252 ACCTGTTAAAGCTGGATCCG 57.597 50.000 7.39 3.14 0.00 4.18
877 3477 1.906574 ACCTGTTAAAGCTGGATCCGA 59.093 47.619 7.39 0.00 0.00 4.55
893 3510 7.363880 GCTGGATCCGATATAAATACAGAAGGA 60.364 40.741 7.39 0.00 33.89 3.36
900 3517 2.693267 AAATACAGAAGGAGGGACGC 57.307 50.000 0.00 0.00 0.00 5.19
901 3518 1.867363 AATACAGAAGGAGGGACGCT 58.133 50.000 0.00 0.00 0.00 5.07
902 3519 1.115467 ATACAGAAGGAGGGACGCTG 58.885 55.000 0.00 0.00 0.00 5.18
903 3520 0.970937 TACAGAAGGAGGGACGCTGG 60.971 60.000 0.00 0.00 0.00 4.85
904 3521 3.394836 AGAAGGAGGGACGCTGGC 61.395 66.667 0.00 0.00 0.00 4.85
905 3522 3.706373 GAAGGAGGGACGCTGGCA 61.706 66.667 0.00 0.00 0.00 4.92
906 3523 3.249189 AAGGAGGGACGCTGGCAA 61.249 61.111 0.00 0.00 0.00 4.52
907 3524 3.553095 AAGGAGGGACGCTGGCAAC 62.553 63.158 0.00 0.00 0.00 4.17
909 3526 3.050275 GAGGGACGCTGGCAACAC 61.050 66.667 0.00 0.00 46.17 3.32
910 3527 3.825160 GAGGGACGCTGGCAACACA 62.825 63.158 0.00 0.00 46.17 3.72
911 3528 2.904866 GGGACGCTGGCAACACAA 60.905 61.111 0.00 0.00 46.17 3.33
912 3529 2.331451 GGACGCTGGCAACACAAC 59.669 61.111 0.00 0.00 46.17 3.32
913 3530 2.052237 GACGCTGGCAACACAACG 60.052 61.111 0.00 0.00 46.17 4.10
914 3531 4.250431 ACGCTGGCAACACAACGC 62.250 61.111 0.00 0.00 46.17 4.84
916 3533 3.947841 GCTGGCAACACAACGCGA 61.948 61.111 15.93 0.00 46.17 5.87
917 3534 2.052237 CTGGCAACACAACGCGAC 60.052 61.111 15.93 0.00 46.17 5.19
918 3535 3.838229 CTGGCAACACAACGCGACG 62.838 63.158 15.93 5.37 46.17 5.12
919 3536 4.659874 GGCAACACAACGCGACGG 62.660 66.667 15.93 3.63 0.00 4.79
920 3537 3.632107 GCAACACAACGCGACGGA 61.632 61.111 15.93 0.00 0.00 4.69
921 3538 3.007516 CAACACAACGCGACGGAA 58.992 55.556 15.93 0.00 0.00 4.30
922 3539 1.367195 CAACACAACGCGACGGAAC 60.367 57.895 15.93 0.00 0.00 3.62
923 3540 1.810441 AACACAACGCGACGGAACA 60.810 52.632 15.93 0.00 0.00 3.18
1384 4022 1.617018 CCTGAGCATGGAGAACGGGA 61.617 60.000 0.00 0.00 0.00 5.14
1850 4507 1.666700 CTCTACGACCTTGACCTCTCG 59.333 57.143 0.00 0.00 0.00 4.04
1862 4519 1.455217 CCTCTCGGGGGTGTACGAT 60.455 63.158 0.00 0.00 38.56 3.73
1940 4597 2.157738 GAGGACATTGACTGCAGCTTT 58.842 47.619 15.27 0.00 0.00 3.51
1982 4642 1.498865 GCAAGGTATCCCATGCGACG 61.499 60.000 0.00 0.00 44.68 5.12
2024 4702 4.615378 GACGACGACGACGAGTAC 57.385 61.111 25.15 10.08 42.66 2.73
2025 4703 1.294798 GACGACGACGACGAGTACG 60.295 63.158 25.15 14.84 42.66 3.67
2026 4704 1.665544 GACGACGACGACGAGTACGA 61.666 60.000 25.15 0.00 41.06 3.43
2027 4705 1.294798 CGACGACGACGAGTACGAC 60.295 63.158 15.32 1.87 41.06 4.34
2266 4953 4.105553 GGCCCGGAACTACCACCC 62.106 72.222 0.73 0.00 38.90 4.61
2273 4960 1.509923 GAACTACCACCCGGTCGAG 59.490 63.158 0.00 0.00 44.71 4.04
2275 4962 2.362120 CTACCACCCGGTCGAGGT 60.362 66.667 0.00 5.10 44.71 3.85
2444 5137 9.750125 AAAACAAATGAGGTAAATGAGAAGAAC 57.250 29.630 0.00 0.00 0.00 3.01
2502 5195 5.673818 GCAATGTTTCTTCAGTATTCGGACC 60.674 44.000 0.00 0.00 0.00 4.46
2503 5196 3.934068 TGTTTCTTCAGTATTCGGACCC 58.066 45.455 0.00 0.00 0.00 4.46
2551 5244 7.433708 TCAACTTTTATCTTGCTTCGATGAA 57.566 32.000 1.89 0.00 0.00 2.57
2552 5245 7.521529 TCAACTTTTATCTTGCTTCGATGAAG 58.478 34.615 1.89 2.22 42.03 3.02
2554 5247 7.856145 ACTTTTATCTTGCTTCGATGAAGAT 57.144 32.000 19.68 19.68 41.71 2.40
2555 5248 7.692088 ACTTTTATCTTGCTTCGATGAAGATG 58.308 34.615 22.10 14.38 41.71 2.90
2556 5249 7.335422 ACTTTTATCTTGCTTCGATGAAGATGT 59.665 33.333 22.10 14.75 41.71 3.06
2557 5250 8.716646 TTTTATCTTGCTTCGATGAAGATGTA 57.283 30.769 22.10 14.08 41.71 2.29
2558 5251 7.936950 TTATCTTGCTTCGATGAAGATGTAG 57.063 36.000 22.10 4.26 41.71 2.74
2559 5252 4.115516 TCTTGCTTCGATGAAGATGTAGC 58.884 43.478 10.58 0.00 41.71 3.58
2560 5253 3.525268 TGCTTCGATGAAGATGTAGCA 57.475 42.857 10.58 0.19 41.71 3.49
2562 5255 2.220593 GCTTCGATGAAGATGTAGCAGC 59.779 50.000 10.58 0.00 41.71 5.25
2607 5300 2.346541 CGAGCTCCCTCTGCTGACA 61.347 63.158 8.47 0.00 41.30 3.58
2623 5323 0.523072 GACACACGCAGCCATGAAAT 59.477 50.000 0.00 0.00 0.00 2.17
2630 5330 5.978919 CACACGCAGCCATGAAATTATTTAT 59.021 36.000 0.00 0.00 0.00 1.40
2631 5331 6.476380 CACACGCAGCCATGAAATTATTTATT 59.524 34.615 0.00 0.00 0.00 1.40
2632 5332 7.647318 CACACGCAGCCATGAAATTATTTATTA 59.353 33.333 0.00 0.00 0.00 0.98
2637 5337 9.185192 GCAGCCATGAAATTATTTATTACTGAC 57.815 33.333 0.00 1.70 0.00 3.51
2705 5408 8.872845 CAAACAATTGTTGAGCTTTAACTTTCT 58.127 29.630 23.93 0.04 38.44 2.52
2706 5409 9.435688 AAACAATTGTTGAGCTTTAACTTTCTT 57.564 25.926 23.93 0.00 38.44 2.52
2707 5410 9.435688 AACAATTGTTGAGCTTTAACTTTCTTT 57.564 25.926 22.71 0.00 36.80 2.52
2716 5419 9.227777 TGAGCTTTAACTTTCTTTATAGTTCCC 57.772 33.333 0.00 0.00 36.16 3.97
2717 5420 8.577048 AGCTTTAACTTTCTTTATAGTTCCCC 57.423 34.615 0.00 0.00 36.16 4.81
2718 5421 7.336176 AGCTTTAACTTTCTTTATAGTTCCCCG 59.664 37.037 0.00 0.00 36.16 5.73
2719 5422 6.990341 TTAACTTTCTTTATAGTTCCCCGC 57.010 37.500 0.00 0.00 36.16 6.13
2720 5423 4.563140 ACTTTCTTTATAGTTCCCCGCA 57.437 40.909 0.00 0.00 0.00 5.69
2721 5424 4.913784 ACTTTCTTTATAGTTCCCCGCAA 58.086 39.130 0.00 0.00 0.00 4.85
2722 5425 5.318630 ACTTTCTTTATAGTTCCCCGCAAA 58.681 37.500 0.00 0.00 0.00 3.68
2723 5426 5.771165 ACTTTCTTTATAGTTCCCCGCAAAA 59.229 36.000 0.00 0.00 0.00 2.44
2724 5427 6.265876 ACTTTCTTTATAGTTCCCCGCAAAAA 59.734 34.615 0.00 0.00 0.00 1.94
2765 5468 4.199310 TGCTAGGTCCAAATCATTGCTAC 58.801 43.478 0.00 0.00 35.10 3.58
2770 5473 4.009675 GGTCCAAATCATTGCTACACTCA 58.990 43.478 0.00 0.00 35.10 3.41
2802 5505 2.032030 AGCGAAAATCCGTGTGAAGTTG 60.032 45.455 0.00 0.00 0.00 3.16
2816 5519 6.456988 CGTGTGAAGTTGTCTTTTAGCTTTCT 60.457 38.462 0.00 0.00 33.64 2.52
2818 5521 7.755373 GTGTGAAGTTGTCTTTTAGCTTTCTTT 59.245 33.333 0.00 0.00 33.64 2.52
2819 5522 7.968405 TGTGAAGTTGTCTTTTAGCTTTCTTTC 59.032 33.333 0.00 0.00 33.64 2.62
2822 5525 8.917415 AAGTTGTCTTTTAGCTTTCTTTCTTG 57.083 30.769 0.00 0.00 0.00 3.02
2823 5526 7.484140 AGTTGTCTTTTAGCTTTCTTTCTTGG 58.516 34.615 0.00 0.00 0.00 3.61
2824 5527 6.391227 TGTCTTTTAGCTTTCTTTCTTGGG 57.609 37.500 0.00 0.00 0.00 4.12
2825 5528 5.891551 TGTCTTTTAGCTTTCTTTCTTGGGT 59.108 36.000 0.00 0.00 0.00 4.51
2826 5529 6.379988 TGTCTTTTAGCTTTCTTTCTTGGGTT 59.620 34.615 0.00 0.00 0.00 4.11
2828 5531 8.410912 GTCTTTTAGCTTTCTTTCTTGGGTTTA 58.589 33.333 0.00 0.00 0.00 2.01
2829 5532 9.143155 TCTTTTAGCTTTCTTTCTTGGGTTTAT 57.857 29.630 0.00 0.00 0.00 1.40
2830 5533 9.411801 CTTTTAGCTTTCTTTCTTGGGTTTATC 57.588 33.333 0.00 0.00 0.00 1.75
2833 5536 9.975218 TTAGCTTTCTTTCTTGGGTTTATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
2834 5537 8.286191 AGCTTTCTTTCTTGGGTTTATCTATG 57.714 34.615 0.00 0.00 0.00 2.23
2835 5538 7.890655 AGCTTTCTTTCTTGGGTTTATCTATGT 59.109 33.333 0.00 0.00 0.00 2.29
2836 5539 7.970614 GCTTTCTTTCTTGGGTTTATCTATGTG 59.029 37.037 0.00 0.00 0.00 3.21
2837 5540 7.391148 TTCTTTCTTGGGTTTATCTATGTGC 57.609 36.000 0.00 0.00 0.00 4.57
2839 5542 4.164843 TCTTGGGTTTATCTATGTGCCC 57.835 45.455 0.00 0.00 36.73 5.36
2848 5809 0.618680 TCTATGTGCCCTGGTCTGCT 60.619 55.000 0.00 0.00 0.00 4.24
2900 5861 5.381174 TTCTTCAGTTGATTGCTTCATGG 57.619 39.130 0.00 0.00 33.34 3.66
2911 5872 3.423539 TGCTTCATGGTAACTGCTTCT 57.576 42.857 0.00 0.00 37.61 2.85
2928 5897 6.481644 ACTGCTTCTGTAATATTAGCTGCTTC 59.518 38.462 7.79 0.00 35.14 3.86
2932 5901 7.307692 GCTTCTGTAATATTAGCTGCTTCCTTC 60.308 40.741 7.79 0.00 0.00 3.46
2995 7227 2.181525 CAAGCCCCGGAAATTGCG 59.818 61.111 0.73 0.00 0.00 4.85
3000 7232 0.521735 GCCCCGGAAATTGCGATATC 59.478 55.000 8.81 0.00 30.86 1.63
3011 7246 7.119262 CGGAAATTGCGATATCCCTAAAATAGT 59.881 37.037 0.00 0.00 30.86 2.12
3015 7250 6.335471 TGCGATATCCCTAAAATAGTCGAA 57.665 37.500 0.00 0.00 0.00 3.71
3092 7327 5.359194 TTTGTTTCCTTACCAATGGCAAA 57.641 34.783 0.00 0.00 0.00 3.68
3097 7332 2.896685 TCCTTACCAATGGCAAAACTGG 59.103 45.455 0.00 0.00 34.95 4.00
3098 7333 2.896685 CCTTACCAATGGCAAAACTGGA 59.103 45.455 13.27 0.00 32.97 3.86
3102 7337 4.006780 ACCAATGGCAAAACTGGATTTC 57.993 40.909 13.27 0.00 32.97 2.17
3106 7341 6.171921 CCAATGGCAAAACTGGATTTCATAA 58.828 36.000 0.00 0.00 0.00 1.90
3115 7350 7.486407 AAACTGGATTTCATAAGGAAGCATT 57.514 32.000 0.00 0.00 36.72 3.56
3151 7386 3.805108 GCATTCTTCTAGATGGACGGCAT 60.805 47.826 5.84 0.00 0.00 4.40
3208 7445 7.797121 ATGGAAATCATTTTGGGAAAGTACT 57.203 32.000 0.00 0.00 30.55 2.73
3209 7446 8.893563 ATGGAAATCATTTTGGGAAAGTACTA 57.106 30.769 0.00 0.00 30.55 1.82
3235 7472 9.627395 ATTATTTCTCACTAATTACGATCTCCG 57.373 33.333 0.00 0.00 45.44 4.63
3245 7482 3.780624 CGATCTCCGTCCCCAATTT 57.219 52.632 0.00 0.00 0.00 1.82
3246 7483 1.299541 CGATCTCCGTCCCCAATTTG 58.700 55.000 0.00 0.00 0.00 2.32
3247 7484 1.134521 CGATCTCCGTCCCCAATTTGA 60.135 52.381 0.00 0.00 0.00 2.69
3249 7486 3.244078 CGATCTCCGTCCCCAATTTGATA 60.244 47.826 0.00 0.00 0.00 2.15
3250 7487 4.563580 CGATCTCCGTCCCCAATTTGATAT 60.564 45.833 0.00 0.00 0.00 1.63
3253 7490 6.448369 TCTCCGTCCCCAATTTGATATTAT 57.552 37.500 0.00 0.00 0.00 1.28
3255 7492 7.620880 TCTCCGTCCCCAATTTGATATTATAG 58.379 38.462 0.00 0.00 0.00 1.31
3256 7493 7.236847 TCTCCGTCCCCAATTTGATATTATAGT 59.763 37.037 0.00 0.00 0.00 2.12
3257 7494 7.391620 TCCGTCCCCAATTTGATATTATAGTC 58.608 38.462 0.00 0.00 0.00 2.59
3259 7496 6.598064 CGTCCCCAATTTGATATTATAGTCCC 59.402 42.308 0.00 0.00 0.00 4.46
3260 7497 6.598064 GTCCCCAATTTGATATTATAGTCCCG 59.402 42.308 0.00 0.00 0.00 5.14
3261 7498 5.885912 CCCCAATTTGATATTATAGTCCCGG 59.114 44.000 0.00 0.00 0.00 5.73
3262 7499 6.481643 CCCAATTTGATATTATAGTCCCGGT 58.518 40.000 0.00 0.00 0.00 5.28
3263 7500 6.374333 CCCAATTTGATATTATAGTCCCGGTG 59.626 42.308 0.00 0.00 0.00 4.94
3264 7501 6.940298 CCAATTTGATATTATAGTCCCGGTGT 59.060 38.462 0.00 0.00 0.00 4.16
3266 7503 9.151471 CAATTTGATATTATAGTCCCGGTGTAG 57.849 37.037 0.00 0.00 0.00 2.74
3267 7504 8.660295 ATTTGATATTATAGTCCCGGTGTAGA 57.340 34.615 0.00 0.00 0.00 2.59
3269 7506 9.758021 TTTGATATTATAGTCCCGGTGTAGATA 57.242 33.333 0.00 0.00 0.00 1.98
3270 7507 8.975663 TGATATTATAGTCCCGGTGTAGATAG 57.024 38.462 0.00 0.00 0.00 2.08
3271 7508 8.775151 TGATATTATAGTCCCGGTGTAGATAGA 58.225 37.037 0.00 0.00 0.00 1.98
3273 7510 9.986157 ATATTATAGTCCCGGTGTAGATAGAAA 57.014 33.333 0.00 0.00 0.00 2.52
3274 7511 8.896722 ATTATAGTCCCGGTGTAGATAGAAAT 57.103 34.615 0.00 0.00 0.00 2.17
3275 7512 8.716674 TTATAGTCCCGGTGTAGATAGAAATT 57.283 34.615 0.00 0.00 0.00 1.82
3277 7514 4.344390 AGTCCCGGTGTAGATAGAAATTCC 59.656 45.833 0.00 0.00 0.00 3.01
3278 7515 3.644738 TCCCGGTGTAGATAGAAATTCCC 59.355 47.826 0.00 0.00 0.00 3.97
3279 7516 3.646637 CCCGGTGTAGATAGAAATTCCCT 59.353 47.826 0.00 0.00 0.00 4.20
3280 7517 4.102681 CCCGGTGTAGATAGAAATTCCCTT 59.897 45.833 0.00 0.00 0.00 3.95
3281 7518 5.306160 CCCGGTGTAGATAGAAATTCCCTTA 59.694 44.000 0.00 0.00 0.00 2.69
3282 7519 6.013639 CCCGGTGTAGATAGAAATTCCCTTAT 60.014 42.308 0.00 0.00 0.00 1.73
3283 7520 6.874134 CCGGTGTAGATAGAAATTCCCTTATG 59.126 42.308 0.00 0.00 0.00 1.90
3284 7521 7.256190 CCGGTGTAGATAGAAATTCCCTTATGA 60.256 40.741 0.00 0.00 0.00 2.15
3286 7523 9.660180 GGTGTAGATAGAAATTCCCTTATGATC 57.340 37.037 0.00 0.00 0.00 2.92
3300 7537 7.680730 TCCCTTATGATCTAGTAATTCCAAGC 58.319 38.462 0.00 0.00 0.00 4.01
3301 7538 6.591834 CCCTTATGATCTAGTAATTCCAAGCG 59.408 42.308 0.00 0.00 0.00 4.68
3303 7540 8.037758 CCTTATGATCTAGTAATTCCAAGCGAT 58.962 37.037 0.00 0.00 0.00 4.58
3314 7551 9.787435 AGTAATTCCAAGCGATAATAAATACCA 57.213 29.630 0.00 0.00 0.00 3.25
3316 7553 7.687941 ATTCCAAGCGATAATAAATACCAGG 57.312 36.000 0.00 0.00 0.00 4.45
3317 7554 6.428083 TCCAAGCGATAATAAATACCAGGA 57.572 37.500 0.00 0.00 0.00 3.86
3318 7555 6.228258 TCCAAGCGATAATAAATACCAGGAC 58.772 40.000 0.00 0.00 0.00 3.85
3320 7557 6.710744 CCAAGCGATAATAAATACCAGGACTT 59.289 38.462 0.00 0.00 0.00 3.01
3322 7559 8.926710 CAAGCGATAATAAATACCAGGACTTAG 58.073 37.037 0.00 0.00 0.00 2.18
3326 7563 9.436957 CGATAATAAATACCAGGACTTAGCAAT 57.563 33.333 0.00 0.00 0.00 3.56
3333 7570 9.646522 AAATACCAGGACTTAGCAATATTTGAT 57.353 29.630 0.00 0.00 0.00 2.57
3334 7571 9.646522 AATACCAGGACTTAGCAATATTTGATT 57.353 29.630 0.00 0.00 0.00 2.57
3335 7572 7.338800 ACCAGGACTTAGCAATATTTGATTG 57.661 36.000 0.00 0.00 0.00 2.67
3336 7573 7.118723 ACCAGGACTTAGCAATATTTGATTGA 58.881 34.615 0.00 0.00 0.00 2.57
3337 7574 7.781693 ACCAGGACTTAGCAATATTTGATTGAT 59.218 33.333 0.00 0.00 0.00 2.57
3338 7575 8.295288 CCAGGACTTAGCAATATTTGATTGATC 58.705 37.037 1.51 0.00 0.00 2.92
3340 7577 8.844244 AGGACTTAGCAATATTTGATTGATCAC 58.156 33.333 0.00 0.00 36.36 3.06
3341 7578 8.623903 GGACTTAGCAATATTTGATTGATCACA 58.376 33.333 0.00 0.00 36.36 3.58
3346 7583 8.570096 AGCAATATTTGATTGATCACAATTCG 57.430 30.769 0.00 0.00 45.30 3.34
3347 7584 7.650504 AGCAATATTTGATTGATCACAATTCGG 59.349 33.333 0.00 0.00 45.30 4.30
3348 7585 7.436080 GCAATATTTGATTGATCACAATTCGGT 59.564 33.333 0.00 0.00 45.30 4.69
3349 7586 9.949174 CAATATTTGATTGATCACAATTCGGTA 57.051 29.630 0.00 0.00 45.30 4.02
3356 7593 9.336171 TGATTGATCACAATTCGGTATAATTCA 57.664 29.630 0.00 0.00 45.30 2.57
3394 9352 5.160641 TCGATAGAAATGGTTTGCTTTTGC 58.839 37.500 0.00 0.00 46.15 3.68
3413 9371 7.539712 TTTTGCACATCGAAACCAAAATTTA 57.460 28.000 10.55 0.00 32.39 1.40
3414 9372 7.539712 TTTGCACATCGAAACCAAAATTTAA 57.460 28.000 0.00 0.00 0.00 1.52
3415 9373 7.721286 TTGCACATCGAAACCAAAATTTAAT 57.279 28.000 0.00 0.00 0.00 1.40
3416 9374 8.818141 TTGCACATCGAAACCAAAATTTAATA 57.182 26.923 0.00 0.00 0.00 0.98
3417 9375 8.994429 TGCACATCGAAACCAAAATTTAATAT 57.006 26.923 0.00 0.00 0.00 1.28
3418 9376 9.429359 TGCACATCGAAACCAAAATTTAATATT 57.571 25.926 0.00 0.00 0.00 1.28
3419 9377 9.687717 GCACATCGAAACCAAAATTTAATATTG 57.312 29.630 0.00 0.00 0.00 1.90
3420 9378 9.687717 CACATCGAAACCAAAATTTAATATTGC 57.312 29.630 0.00 0.00 0.00 3.56
3422 9380 9.904647 CATCGAAACCAAAATTTAATATTGCAG 57.095 29.630 0.00 0.00 0.00 4.41
3424 9382 9.868277 TCGAAACCAAAATTTAATATTGCAGAT 57.132 25.926 0.00 0.00 0.00 2.90
3442 9400 9.764363 ATTGCAGATACGTATAATTCAGAAGAA 57.236 29.630 8.34 0.00 38.31 2.52
3443 9401 9.764363 TTGCAGATACGTATAATTCAGAAGAAT 57.236 29.630 8.34 0.00 46.20 2.40
3457 9415 9.965902 AATTCAGAAGAATAGGTAAGATGTGTT 57.034 29.630 0.00 0.00 43.52 3.32
3458 9416 9.965902 ATTCAGAAGAATAGGTAAGATGTGTTT 57.034 29.630 0.00 0.00 42.54 2.83
3459 9417 9.793259 TTCAGAAGAATAGGTAAGATGTGTTTT 57.207 29.630 0.00 0.00 0.00 2.43
3460 9418 9.219603 TCAGAAGAATAGGTAAGATGTGTTTTG 57.780 33.333 0.00 0.00 0.00 2.44
3461 9419 9.003658 CAGAAGAATAGGTAAGATGTGTTTTGT 57.996 33.333 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.081242 CCATAATGCCGCAATCCGC 60.081 57.895 0.00 0.00 35.03 5.54
55 56 1.081242 GCCATAATGCCGCAATCCG 60.081 57.895 0.00 0.00 0.00 4.18
56 57 1.081242 CGCCATAATGCCGCAATCC 60.081 57.895 0.00 0.00 0.00 3.01
57 58 0.523072 ATCGCCATAATGCCGCAATC 59.477 50.000 0.00 0.00 0.00 2.67
58 59 1.819928 TATCGCCATAATGCCGCAAT 58.180 45.000 0.00 0.00 0.00 3.56
59 60 1.819928 ATATCGCCATAATGCCGCAA 58.180 45.000 0.00 0.00 0.00 4.85
60 61 1.819928 AATATCGCCATAATGCCGCA 58.180 45.000 0.00 0.00 0.00 5.69
61 62 2.919666 AAATATCGCCATAATGCCGC 57.080 45.000 0.00 0.00 0.00 6.53
62 63 4.261155 CCCATAAATATCGCCATAATGCCG 60.261 45.833 0.00 0.00 0.00 5.69
63 64 4.887071 TCCCATAAATATCGCCATAATGCC 59.113 41.667 0.00 0.00 0.00 4.40
64 65 6.095440 ACTTCCCATAAATATCGCCATAATGC 59.905 38.462 0.00 0.00 0.00 3.56
65 66 7.630242 ACTTCCCATAAATATCGCCATAATG 57.370 36.000 0.00 0.00 0.00 1.90
66 67 7.122650 CCAACTTCCCATAAATATCGCCATAAT 59.877 37.037 0.00 0.00 0.00 1.28
67 68 6.432783 CCAACTTCCCATAAATATCGCCATAA 59.567 38.462 0.00 0.00 0.00 1.90
68 69 5.943416 CCAACTTCCCATAAATATCGCCATA 59.057 40.000 0.00 0.00 0.00 2.74
69 70 4.766891 CCAACTTCCCATAAATATCGCCAT 59.233 41.667 0.00 0.00 0.00 4.40
70 71 4.141287 CCAACTTCCCATAAATATCGCCA 58.859 43.478 0.00 0.00 0.00 5.69
71 72 3.506067 CCCAACTTCCCATAAATATCGCC 59.494 47.826 0.00 0.00 0.00 5.54
72 73 3.506067 CCCCAACTTCCCATAAATATCGC 59.494 47.826 0.00 0.00 0.00 4.58
73 74 3.506067 GCCCCAACTTCCCATAAATATCG 59.494 47.826 0.00 0.00 0.00 2.92
74 75 3.506067 CGCCCCAACTTCCCATAAATATC 59.494 47.826 0.00 0.00 0.00 1.63
75 76 3.139397 TCGCCCCAACTTCCCATAAATAT 59.861 43.478 0.00 0.00 0.00 1.28
76 77 2.510382 TCGCCCCAACTTCCCATAAATA 59.490 45.455 0.00 0.00 0.00 1.40
77 78 1.286553 TCGCCCCAACTTCCCATAAAT 59.713 47.619 0.00 0.00 0.00 1.40
78 79 0.699399 TCGCCCCAACTTCCCATAAA 59.301 50.000 0.00 0.00 0.00 1.40
79 80 0.699399 TTCGCCCCAACTTCCCATAA 59.301 50.000 0.00 0.00 0.00 1.90
80 81 0.699399 TTTCGCCCCAACTTCCCATA 59.301 50.000 0.00 0.00 0.00 2.74
81 82 0.178947 TTTTCGCCCCAACTTCCCAT 60.179 50.000 0.00 0.00 0.00 4.00
82 83 0.397254 TTTTTCGCCCCAACTTCCCA 60.397 50.000 0.00 0.00 0.00 4.37
83 84 0.973632 ATTTTTCGCCCCAACTTCCC 59.026 50.000 0.00 0.00 0.00 3.97
84 85 1.067142 GGATTTTTCGCCCCAACTTCC 60.067 52.381 0.00 0.00 0.00 3.46
85 86 1.893137 AGGATTTTTCGCCCCAACTTC 59.107 47.619 0.00 0.00 0.00 3.01
86 87 2.009681 AGGATTTTTCGCCCCAACTT 57.990 45.000 0.00 0.00 0.00 2.66
87 88 1.893137 GAAGGATTTTTCGCCCCAACT 59.107 47.619 0.00 0.00 0.00 3.16
88 89 1.893137 AGAAGGATTTTTCGCCCCAAC 59.107 47.619 0.00 0.00 32.33 3.77
89 90 2.167662 GAGAAGGATTTTTCGCCCCAA 58.832 47.619 0.00 0.00 32.33 4.12
90 91 1.074727 TGAGAAGGATTTTTCGCCCCA 59.925 47.619 0.00 0.00 32.33 4.96
91 92 1.834188 TGAGAAGGATTTTTCGCCCC 58.166 50.000 0.00 0.00 32.33 5.80
92 93 3.506067 TCTTTGAGAAGGATTTTTCGCCC 59.494 43.478 0.00 0.00 33.56 6.13
93 94 4.216472 AGTCTTTGAGAAGGATTTTTCGCC 59.784 41.667 0.00 0.00 33.56 5.54
94 95 5.363979 AGTCTTTGAGAAGGATTTTTCGC 57.636 39.130 0.00 0.00 33.56 4.70
95 96 7.959651 CACATAGTCTTTGAGAAGGATTTTTCG 59.040 37.037 0.00 0.00 33.56 3.46
96 97 8.787852 ACACATAGTCTTTGAGAAGGATTTTTC 58.212 33.333 0.00 0.00 33.56 2.29
97 98 8.697507 ACACATAGTCTTTGAGAAGGATTTTT 57.302 30.769 0.00 0.00 33.56 1.94
268 269 7.777095 TGCATCACACACTAATACATACAGTA 58.223 34.615 0.00 0.00 37.06 2.74
269 270 6.639563 TGCATCACACACTAATACATACAGT 58.360 36.000 0.00 0.00 0.00 3.55
270 271 7.538303 TTGCATCACACACTAATACATACAG 57.462 36.000 0.00 0.00 0.00 2.74
271 272 8.504812 AATTGCATCACACACTAATACATACA 57.495 30.769 0.00 0.00 0.00 2.29
288 289 9.956720 GCCCTATGATAACATATTAATTGCATC 57.043 33.333 0.00 1.00 38.17 3.91
302 303 3.557264 GCACACCCTAGCCCTATGATAAC 60.557 52.174 0.00 0.00 0.00 1.89
305 306 1.059913 GCACACCCTAGCCCTATGAT 58.940 55.000 0.00 0.00 0.00 2.45
309 310 2.038329 ACGCACACCCTAGCCCTA 59.962 61.111 0.00 0.00 0.00 3.53
310 311 3.706373 CACGCACACCCTAGCCCT 61.706 66.667 0.00 0.00 0.00 5.19
311 312 4.016706 ACACGCACACCCTAGCCC 62.017 66.667 0.00 0.00 0.00 5.19
312 313 2.742372 CACACGCACACCCTAGCC 60.742 66.667 0.00 0.00 0.00 3.93
313 314 2.030562 ACACACGCACACCCTAGC 59.969 61.111 0.00 0.00 0.00 3.42
314 315 2.317609 GCACACACGCACACCCTAG 61.318 63.158 0.00 0.00 0.00 3.02
315 316 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
318 319 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
319 320 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
320 321 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
321 322 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
322 323 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
323 324 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
324 325 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
325 326 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
326 327 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
327 328 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
328 329 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
329 330 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
330 331 1.855295 TACTCACCCCTATGAACGCA 58.145 50.000 0.00 0.00 0.00 5.24
331 332 4.495422 CATATACTCACCCCTATGAACGC 58.505 47.826 0.00 0.00 0.00 4.84
332 333 4.495422 GCATATACTCACCCCTATGAACG 58.505 47.826 0.00 0.00 0.00 3.95
333 334 4.495422 CGCATATACTCACCCCTATGAAC 58.505 47.826 0.00 0.00 0.00 3.18
334 335 3.056107 GCGCATATACTCACCCCTATGAA 60.056 47.826 0.30 0.00 0.00 2.57
335 336 2.496070 GCGCATATACTCACCCCTATGA 59.504 50.000 0.30 0.00 0.00 2.15
336 337 2.233676 TGCGCATATACTCACCCCTATG 59.766 50.000 5.66 0.00 0.00 2.23
337 338 2.536066 TGCGCATATACTCACCCCTAT 58.464 47.619 5.66 0.00 0.00 2.57
338 339 2.003937 TGCGCATATACTCACCCCTA 57.996 50.000 5.66 0.00 0.00 3.53
339 340 1.352083 ATGCGCATATACTCACCCCT 58.648 50.000 24.02 0.00 0.00 4.79
340 341 2.185004 AATGCGCATATACTCACCCC 57.815 50.000 25.61 0.00 0.00 4.95
341 342 2.350772 GCAAATGCGCATATACTCACCC 60.351 50.000 25.61 1.17 0.00 4.61
342 343 2.921126 GCAAATGCGCATATACTCACC 58.079 47.619 25.61 2.80 0.00 4.02
355 356 4.208047 TGAACACAATACAAACGCAAATGC 59.792 37.500 0.00 0.00 37.78 3.56
356 357 5.879948 TGAACACAATACAAACGCAAATG 57.120 34.783 0.00 0.00 0.00 2.32
357 358 6.893958 TTTGAACACAATACAAACGCAAAT 57.106 29.167 0.00 0.00 0.00 2.32
358 359 6.706055 TTTTGAACACAATACAAACGCAAA 57.294 29.167 0.00 0.00 34.09 3.68
359 360 6.706055 TTTTTGAACACAATACAAACGCAA 57.294 29.167 0.00 0.00 34.09 4.85
360 361 6.893958 ATTTTTGAACACAATACAAACGCA 57.106 29.167 0.00 0.00 34.09 5.24
383 384 9.984190 TCGTATGTACAATGCACCTTAATATTA 57.016 29.630 0.00 0.00 0.00 0.98
392 393 5.983720 AGTAATCTCGTATGTACAATGCACC 59.016 40.000 0.00 0.00 0.00 5.01
398 399 9.605275 ACAGTAGTAGTAATCTCGTATGTACAA 57.395 33.333 0.00 0.00 0.00 2.41
401 402 9.605275 AACACAGTAGTAGTAATCTCGTATGTA 57.395 33.333 0.00 0.00 0.00 2.29
447 448 1.024271 TTGTCTGTTCAAGCTGGTGC 58.976 50.000 0.00 0.00 40.05 5.01
448 449 3.304928 GGAATTGTCTGTTCAAGCTGGTG 60.305 47.826 0.00 0.00 0.00 4.17
449 450 2.887152 GGAATTGTCTGTTCAAGCTGGT 59.113 45.455 0.00 0.00 0.00 4.00
451 452 7.798596 ATATAGGAATTGTCTGTTCAAGCTG 57.201 36.000 0.00 0.00 0.00 4.24
452 453 7.225538 CGAATATAGGAATTGTCTGTTCAAGCT 59.774 37.037 0.00 0.00 0.00 3.74
453 454 7.348201 CGAATATAGGAATTGTCTGTTCAAGC 58.652 38.462 0.00 0.00 0.00 4.01
454 455 7.011389 TGCGAATATAGGAATTGTCTGTTCAAG 59.989 37.037 0.00 0.00 0.00 3.02
456 457 6.345298 TGCGAATATAGGAATTGTCTGTTCA 58.655 36.000 0.00 0.00 0.00 3.18
457 458 6.844696 TGCGAATATAGGAATTGTCTGTTC 57.155 37.500 0.00 0.00 0.00 3.18
458 459 6.597672 TGTTGCGAATATAGGAATTGTCTGTT 59.402 34.615 0.00 0.00 0.00 3.16
460 461 6.293081 CCTGTTGCGAATATAGGAATTGTCTG 60.293 42.308 0.00 0.00 0.00 3.51
462 463 5.758296 TCCTGTTGCGAATATAGGAATTGTC 59.242 40.000 0.00 0.00 34.77 3.18
463 464 5.680619 TCCTGTTGCGAATATAGGAATTGT 58.319 37.500 0.00 0.00 34.77 2.71
464 465 6.618287 TTCCTGTTGCGAATATAGGAATTG 57.382 37.500 0.00 0.00 41.30 2.32
466 467 7.054124 TCTTTTCCTGTTGCGAATATAGGAAT 58.946 34.615 0.00 0.00 44.44 3.01
482 484 5.915196 GGAATCGTCTGTTTTTCTTTTCCTG 59.085 40.000 0.00 0.00 0.00 3.86
484 486 6.073327 AGGAATCGTCTGTTTTTCTTTTCC 57.927 37.500 0.00 0.00 0.00 3.13
499 501 1.068741 GGTCGGAGCAATAGGAATCGT 59.931 52.381 1.64 0.00 0.00 3.73
504 506 1.107538 CGGAGGTCGGAGCAATAGGA 61.108 60.000 10.15 0.00 34.75 2.94
506 508 0.962489 ATCGGAGGTCGGAGCAATAG 59.038 55.000 10.15 0.00 39.77 1.73
516 518 1.202475 GGAAGCTCTTGATCGGAGGTC 60.202 57.143 16.70 11.66 40.10 3.85
521 523 2.906691 ATCAGGAAGCTCTTGATCGG 57.093 50.000 5.38 0.00 38.62 4.18
543 567 5.557866 TCAGGAAGCTCTTACCCTAAAAAC 58.442 41.667 0.00 0.00 0.00 2.43
547 571 5.250774 ACAATTCAGGAAGCTCTTACCCTAA 59.749 40.000 0.00 0.00 0.00 2.69
548 572 4.783227 ACAATTCAGGAAGCTCTTACCCTA 59.217 41.667 0.00 0.00 0.00 3.53
549 573 3.589288 ACAATTCAGGAAGCTCTTACCCT 59.411 43.478 0.00 0.00 0.00 4.34
551 575 4.327680 ACACAATTCAGGAAGCTCTTACC 58.672 43.478 0.00 0.00 0.00 2.85
552 576 7.173390 ACTTTACACAATTCAGGAAGCTCTTAC 59.827 37.037 0.00 0.00 0.00 2.34
569 3168 1.870580 CGCAACCGAGGACTTTACACA 60.871 52.381 0.00 0.00 36.29 3.72
575 3174 2.660258 AAGCACGCAACCGAGGACTT 62.660 55.000 0.00 0.00 38.29 3.01
583 3182 1.368850 GTTCACGAAGCACGCAACC 60.369 57.895 0.00 0.00 46.94 3.77
611 3210 4.389077 CCGACTTCAAATCTAACACAGTCC 59.611 45.833 0.00 0.00 0.00 3.85
684 3284 6.074409 CGACTTATTGATTTTTGCAACAGCAA 60.074 34.615 10.14 10.14 45.83 3.91
686 3286 5.164061 CCGACTTATTGATTTTTGCAACAGC 60.164 40.000 0.00 0.00 0.00 4.40
687 3287 5.920273 ACCGACTTATTGATTTTTGCAACAG 59.080 36.000 0.00 0.00 0.00 3.16
737 3337 7.336931 TCCAAGAACTCAATTTTCCAGTATAGC 59.663 37.037 0.00 0.00 0.00 2.97
738 3338 8.792830 TCCAAGAACTCAATTTTCCAGTATAG 57.207 34.615 0.00 0.00 0.00 1.31
743 3343 5.072741 TCCTCCAAGAACTCAATTTTCCAG 58.927 41.667 0.00 0.00 0.00 3.86
756 3356 1.270839 CGGAAACAGCTCCTCCAAGAA 60.271 52.381 6.17 0.00 32.82 2.52
763 3363 1.006102 CGACACGGAAACAGCTCCT 60.006 57.895 0.00 0.00 32.82 3.69
815 3415 9.578439 CCTCTAAAATCTTTCCAAACATGATTC 57.422 33.333 0.00 0.00 0.00 2.52
816 3416 9.093458 ACCTCTAAAATCTTTCCAAACATGATT 57.907 29.630 0.00 0.00 0.00 2.57
817 3417 8.655935 ACCTCTAAAATCTTTCCAAACATGAT 57.344 30.769 0.00 0.00 0.00 2.45
818 3418 7.094805 CGACCTCTAAAATCTTTCCAAACATGA 60.095 37.037 0.00 0.00 0.00 3.07
819 3419 7.023575 CGACCTCTAAAATCTTTCCAAACATG 58.976 38.462 0.00 0.00 0.00 3.21
820 3420 6.715264 ACGACCTCTAAAATCTTTCCAAACAT 59.285 34.615 0.00 0.00 0.00 2.71
821 3421 6.059484 ACGACCTCTAAAATCTTTCCAAACA 58.941 36.000 0.00 0.00 0.00 2.83
822 3422 6.555812 ACGACCTCTAAAATCTTTCCAAAC 57.444 37.500 0.00 0.00 0.00 2.93
823 3423 7.551617 GGATACGACCTCTAAAATCTTTCCAAA 59.448 37.037 0.00 0.00 0.00 3.28
824 3424 7.046033 GGATACGACCTCTAAAATCTTTCCAA 58.954 38.462 0.00 0.00 0.00 3.53
825 3425 6.579865 GGATACGACCTCTAAAATCTTTCCA 58.420 40.000 0.00 0.00 0.00 3.53
867 3467 6.758886 CCTTCTGTATTTATATCGGATCCAGC 59.241 42.308 13.41 0.00 0.00 4.85
868 3468 8.067751 TCCTTCTGTATTTATATCGGATCCAG 57.932 38.462 13.41 4.86 0.00 3.86
869 3469 7.124298 CCTCCTTCTGTATTTATATCGGATCCA 59.876 40.741 13.41 0.00 0.00 3.41
871 3471 7.342284 TCCCTCCTTCTGTATTTATATCGGATC 59.658 40.741 0.00 0.00 0.00 3.36
872 3472 7.124448 GTCCCTCCTTCTGTATTTATATCGGAT 59.876 40.741 0.00 0.00 0.00 4.18
873 3473 6.436532 GTCCCTCCTTCTGTATTTATATCGGA 59.563 42.308 0.00 0.00 0.00 4.55
875 3475 6.323266 CGTCCCTCCTTCTGTATTTATATCG 58.677 44.000 0.00 0.00 0.00 2.92
876 3476 6.071278 AGCGTCCCTCCTTCTGTATTTATATC 60.071 42.308 0.00 0.00 0.00 1.63
877 3477 5.780793 AGCGTCCCTCCTTCTGTATTTATAT 59.219 40.000 0.00 0.00 0.00 0.86
893 3510 3.414136 TTGTGTTGCCAGCGTCCCT 62.414 57.895 0.00 0.00 0.00 4.20
900 3517 2.052237 GTCGCGTTGTGTTGCCAG 60.052 61.111 5.77 0.00 0.00 4.85
901 3518 3.931130 CGTCGCGTTGTGTTGCCA 61.931 61.111 5.77 0.00 0.00 4.92
902 3519 4.659874 CCGTCGCGTTGTGTTGCC 62.660 66.667 5.77 0.00 0.00 4.52
903 3520 3.158011 TTCCGTCGCGTTGTGTTGC 62.158 57.895 5.77 0.00 0.00 4.17
904 3521 1.367195 GTTCCGTCGCGTTGTGTTG 60.367 57.895 5.77 0.00 0.00 3.33
905 3522 1.810441 TGTTCCGTCGCGTTGTGTT 60.810 52.632 5.77 0.00 0.00 3.32
906 3523 2.202770 TGTTCCGTCGCGTTGTGT 60.203 55.556 5.77 0.00 0.00 3.72
907 3524 2.244382 GTGTTCCGTCGCGTTGTG 59.756 61.111 5.77 0.00 0.00 3.33
908 3525 3.324671 CGTGTTCCGTCGCGTTGT 61.325 61.111 5.77 0.00 36.71 3.32
909 3526 2.080116 TTTCGTGTTCCGTCGCGTTG 62.080 55.000 5.77 0.00 41.26 4.10
910 3527 1.877617 TTTCGTGTTCCGTCGCGTT 60.878 52.632 5.77 0.00 41.26 4.84
911 3528 2.278726 TTTCGTGTTCCGTCGCGT 60.279 55.556 5.77 0.00 41.26 6.01
912 3529 2.166985 GTTTCGTGTTCCGTCGCG 59.833 61.111 0.00 0.00 41.75 5.87
913 3530 1.200839 CTGTTTCGTGTTCCGTCGC 59.799 57.895 0.00 0.00 37.94 5.19
914 3531 0.595567 TCCTGTTTCGTGTTCCGTCG 60.596 55.000 0.00 0.00 37.94 5.12
915 3532 1.574134 TTCCTGTTTCGTGTTCCGTC 58.426 50.000 0.00 0.00 37.94 4.79
916 3533 2.027003 TTTCCTGTTTCGTGTTCCGT 57.973 45.000 0.00 0.00 37.94 4.69
917 3534 2.610374 TCTTTTCCTGTTTCGTGTTCCG 59.390 45.455 0.00 0.00 38.13 4.30
918 3535 4.830826 ATCTTTTCCTGTTTCGTGTTCC 57.169 40.909 0.00 0.00 0.00 3.62
919 3536 8.797266 AATAAATCTTTTCCTGTTTCGTGTTC 57.203 30.769 0.00 0.00 0.00 3.18
920 3537 9.030301 CAAATAAATCTTTTCCTGTTTCGTGTT 57.970 29.630 0.00 0.00 0.00 3.32
921 3538 8.194769 ACAAATAAATCTTTTCCTGTTTCGTGT 58.805 29.630 0.00 0.00 0.00 4.49
922 3539 8.574196 ACAAATAAATCTTTTCCTGTTTCGTG 57.426 30.769 0.00 0.00 0.00 4.35
923 3540 8.630037 AGACAAATAAATCTTTTCCTGTTTCGT 58.370 29.630 0.00 0.00 0.00 3.85
965 3582 4.678840 GCAAGAAATCCATGGCTAACAAGG 60.679 45.833 6.96 0.00 39.31 3.61
966 3583 4.427312 GCAAGAAATCCATGGCTAACAAG 58.573 43.478 6.96 0.00 0.00 3.16
968 3585 2.760092 GGCAAGAAATCCATGGCTAACA 59.240 45.455 6.96 0.00 36.76 2.41
969 3586 2.760092 TGGCAAGAAATCCATGGCTAAC 59.240 45.455 6.96 0.00 40.04 2.34
970 3587 3.098774 TGGCAAGAAATCCATGGCTAA 57.901 42.857 6.96 0.00 40.04 3.09
1384 4022 1.535687 AAGGTACGGTGGTGGAGCT 60.536 57.895 0.00 0.00 0.00 4.09
1850 4507 3.953201 CGAGTTATCGTACACCCCC 57.047 57.895 0.00 0.00 44.09 5.40
1862 4519 2.432456 CGCTGCAGGCACGAGTTA 60.432 61.111 17.12 0.00 41.91 2.24
1982 4642 0.179230 CGTCGTCGTCTGTGTAGGTC 60.179 60.000 0.00 0.00 0.00 3.85
2010 4682 1.294798 CGTCGTACTCGTCGTCGTC 60.295 63.158 1.33 0.00 41.73 4.20
2020 4698 3.494336 CTCGGGCGTCGTCGTACT 61.494 66.667 3.66 0.00 40.32 2.73
2030 4708 3.592814 TATCCTCGTGCTCGGGCG 61.593 66.667 1.14 0.00 42.25 6.13
2031 4709 2.027751 GTATCCTCGTGCTCGGGC 59.972 66.667 0.00 0.00 36.05 6.13
2444 5137 1.446792 CTATCCTGCTATGCGGCCG 60.447 63.158 24.05 24.05 32.89 6.13
2524 5217 6.861065 TCGAAGCAAGATAAAAGTTGAAGT 57.139 33.333 0.00 0.00 0.00 3.01
2551 5244 7.059156 AGATAAAAGAAATGGCTGCTACATCT 58.941 34.615 0.00 0.00 0.00 2.90
2552 5245 7.269477 AGATAAAAGAAATGGCTGCTACATC 57.731 36.000 0.00 0.00 0.00 3.06
2554 5247 6.434028 ACAAGATAAAAGAAATGGCTGCTACA 59.566 34.615 0.00 0.00 0.00 2.74
2555 5248 6.856895 ACAAGATAAAAGAAATGGCTGCTAC 58.143 36.000 0.00 0.00 0.00 3.58
2556 5249 7.466746 AACAAGATAAAAGAAATGGCTGCTA 57.533 32.000 0.00 0.00 0.00 3.49
2557 5250 5.990120 ACAAGATAAAAGAAATGGCTGCT 57.010 34.783 0.00 0.00 0.00 4.24
2558 5251 6.870439 AGAAACAAGATAAAAGAAATGGCTGC 59.130 34.615 0.00 0.00 0.00 5.25
2559 5252 8.822652 AAGAAACAAGATAAAAGAAATGGCTG 57.177 30.769 0.00 0.00 0.00 4.85
2560 5253 8.641541 TGAAGAAACAAGATAAAAGAAATGGCT 58.358 29.630 0.00 0.00 0.00 4.75
2607 5300 4.454728 AAATAATTTCATGGCTGCGTGT 57.545 36.364 0.00 0.00 0.00 4.49
2631 5331 9.554395 TCACTGTAAAAATTCAGAATGTCAGTA 57.446 29.630 6.03 0.00 37.40 2.74
2632 5332 8.450578 TCACTGTAAAAATTCAGAATGTCAGT 57.549 30.769 0.00 0.00 37.40 3.41
2637 5337 9.552114 GTCAGATCACTGTAAAAATTCAGAATG 57.448 33.333 0.00 0.00 43.81 2.67
2649 5349 8.908786 AAGAAGAAAATGTCAGATCACTGTAA 57.091 30.769 0.00 0.00 43.81 2.41
2697 5400 6.052405 TGCGGGGAACTATAAAGAAAGTTA 57.948 37.500 0.00 0.00 36.10 2.24
2698 5401 4.913784 TGCGGGGAACTATAAAGAAAGTT 58.086 39.130 0.00 0.00 38.62 2.66
2699 5402 4.563140 TGCGGGGAACTATAAAGAAAGT 57.437 40.909 0.00 0.00 0.00 2.66
2700 5403 5.890424 TTTGCGGGGAACTATAAAGAAAG 57.110 39.130 0.00 0.00 0.00 2.62
2701 5404 6.651975 TTTTTGCGGGGAACTATAAAGAAA 57.348 33.333 0.00 0.00 0.00 2.52
2748 5451 4.009675 TGAGTGTAGCAATGATTTGGACC 58.990 43.478 0.00 0.00 33.22 4.46
2770 5473 4.396166 ACGGATTTTCGCTCAAGATTTGAT 59.604 37.500 0.00 0.00 39.30 2.57
2802 5505 6.392625 ACCCAAGAAAGAAAGCTAAAAGAC 57.607 37.500 0.00 0.00 0.00 3.01
2816 5519 4.953579 GGGCACATAGATAAACCCAAGAAA 59.046 41.667 0.00 0.00 37.30 2.52
2818 5521 3.785887 AGGGCACATAGATAAACCCAAGA 59.214 43.478 0.00 0.00 39.97 3.02
2819 5522 3.885297 CAGGGCACATAGATAAACCCAAG 59.115 47.826 0.00 0.00 39.97 3.61
2822 5525 2.174854 ACCAGGGCACATAGATAAACCC 59.825 50.000 0.00 0.00 37.63 4.11
2823 5526 3.136626 AGACCAGGGCACATAGATAAACC 59.863 47.826 0.00 0.00 0.00 3.27
2824 5527 4.130118 CAGACCAGGGCACATAGATAAAC 58.870 47.826 0.00 0.00 0.00 2.01
2825 5528 3.433598 GCAGACCAGGGCACATAGATAAA 60.434 47.826 0.00 0.00 0.00 1.40
2826 5529 2.104792 GCAGACCAGGGCACATAGATAA 59.895 50.000 0.00 0.00 0.00 1.75
2828 5531 0.471617 GCAGACCAGGGCACATAGAT 59.528 55.000 0.00 0.00 0.00 1.98
2829 5532 0.618680 AGCAGACCAGGGCACATAGA 60.619 55.000 0.00 0.00 0.00 1.98
2830 5533 1.123077 TAGCAGACCAGGGCACATAG 58.877 55.000 0.00 0.00 0.00 2.23
2833 5536 0.252057 TAGTAGCAGACCAGGGCACA 60.252 55.000 0.00 0.00 0.00 4.57
2834 5537 0.902531 TTAGTAGCAGACCAGGGCAC 59.097 55.000 0.00 0.00 0.00 5.01
2835 5538 1.555075 CTTTAGTAGCAGACCAGGGCA 59.445 52.381 0.00 0.00 0.00 5.36
2836 5539 2.317530 CTTTAGTAGCAGACCAGGGC 57.682 55.000 0.00 0.00 0.00 5.19
2848 5809 0.035820 CAACCAGCGGGGCTTTAGTA 60.036 55.000 8.08 0.00 42.05 1.82
2859 5820 3.564225 AGAAGGAAACTAAACAACCAGCG 59.436 43.478 0.00 0.00 42.68 5.18
2900 5861 7.439655 AGCAGCTAATATTACAGAAGCAGTTAC 59.560 37.037 9.29 0.00 35.63 2.50
2957 5926 2.739379 GGCGATTAGGAAGCAGCTATTC 59.261 50.000 0.00 2.86 0.00 1.75
2961 5930 0.253044 TTGGCGATTAGGAAGCAGCT 59.747 50.000 0.00 0.00 0.00 4.24
2963 5932 0.659957 GCTTGGCGATTAGGAAGCAG 59.340 55.000 0.00 0.00 40.47 4.24
2995 7227 7.603024 CCCACTTTCGACTATTTTAGGGATATC 59.397 40.741 0.00 0.00 34.49 1.63
3000 7232 5.093849 TCCCACTTTCGACTATTTTAGGG 57.906 43.478 0.00 0.00 0.00 3.53
3068 7303 5.146010 TGCCATTGGTAAGGAAACAAATC 57.854 39.130 4.26 0.00 0.00 2.17
3092 7327 6.894103 AGAATGCTTCCTTATGAAATCCAGTT 59.106 34.615 0.00 0.00 31.06 3.16
3102 7337 8.455903 TCCTTATGAAAGAATGCTTCCTTATG 57.544 34.615 0.00 0.00 34.37 1.90
3106 7341 5.359292 GCTTCCTTATGAAAGAATGCTTCCT 59.641 40.000 0.00 0.00 34.37 3.36
3151 7386 6.239176 GGATTCACGCCATTCCCAAATAATTA 60.239 38.462 0.00 0.00 0.00 1.40
3185 7422 8.893563 ATAGTACTTTCCCAAAATGATTTCCA 57.106 30.769 0.00 0.00 0.00 3.53
3209 7446 9.627395 CGGAGATCGTAATTAGTGAGAAATAAT 57.373 33.333 0.00 0.00 0.00 1.28
3227 7464 1.134521 TCAAATTGGGGACGGAGATCG 60.135 52.381 0.00 0.00 45.88 3.69
3228 7465 2.710096 TCAAATTGGGGACGGAGATC 57.290 50.000 0.00 0.00 0.00 2.75
3231 7468 7.394816 ACTATAATATCAAATTGGGGACGGAG 58.605 38.462 0.00 0.00 0.00 4.63
3232 7469 7.324388 ACTATAATATCAAATTGGGGACGGA 57.676 36.000 0.00 0.00 0.00 4.69
3233 7470 6.598064 GGACTATAATATCAAATTGGGGACGG 59.402 42.308 0.00 0.00 0.00 4.79
3235 7472 6.598064 CGGGACTATAATATCAAATTGGGGAC 59.402 42.308 0.00 0.00 0.00 4.46
3236 7473 6.296778 CCGGGACTATAATATCAAATTGGGGA 60.297 42.308 0.00 0.00 0.00 4.81
3237 7474 5.885912 CCGGGACTATAATATCAAATTGGGG 59.114 44.000 0.00 0.00 0.00 4.96
3238 7475 6.374333 CACCGGGACTATAATATCAAATTGGG 59.626 42.308 6.32 0.00 0.00 4.12
3239 7476 6.940298 ACACCGGGACTATAATATCAAATTGG 59.060 38.462 6.32 0.00 0.00 3.16
3240 7477 7.979444 ACACCGGGACTATAATATCAAATTG 57.021 36.000 6.32 0.00 0.00 2.32
3241 7478 9.096823 TCTACACCGGGACTATAATATCAAATT 57.903 33.333 6.32 0.00 0.00 1.82
3242 7479 8.660295 TCTACACCGGGACTATAATATCAAAT 57.340 34.615 6.32 0.00 0.00 2.32
3245 7482 8.775151 TCTATCTACACCGGGACTATAATATCA 58.225 37.037 6.32 0.00 0.00 2.15
3246 7483 9.624373 TTCTATCTACACCGGGACTATAATATC 57.376 37.037 6.32 0.00 0.00 1.63
3247 7484 9.986157 TTTCTATCTACACCGGGACTATAATAT 57.014 33.333 6.32 0.00 0.00 1.28
3249 7486 8.896722 ATTTCTATCTACACCGGGACTATAAT 57.103 34.615 6.32 0.00 0.00 1.28
3250 7487 8.716674 AATTTCTATCTACACCGGGACTATAA 57.283 34.615 6.32 0.00 0.00 0.98
3253 7490 5.537674 GGAATTTCTATCTACACCGGGACTA 59.462 44.000 6.32 0.00 0.00 2.59
3255 7492 4.502777 GGGAATTTCTATCTACACCGGGAC 60.503 50.000 6.32 0.00 0.00 4.46
3256 7493 3.644738 GGGAATTTCTATCTACACCGGGA 59.355 47.826 6.32 0.00 0.00 5.14
3257 7494 3.646637 AGGGAATTTCTATCTACACCGGG 59.353 47.826 6.32 0.00 0.00 5.73
3259 7496 7.667557 TCATAAGGGAATTTCTATCTACACCG 58.332 38.462 0.00 0.00 0.00 4.94
3260 7497 9.660180 GATCATAAGGGAATTTCTATCTACACC 57.340 37.037 0.00 0.00 0.00 4.16
3274 7511 8.157476 GCTTGGAATTACTAGATCATAAGGGAA 58.843 37.037 3.03 0.00 0.00 3.97
3275 7512 7.525526 CGCTTGGAATTACTAGATCATAAGGGA 60.526 40.741 3.03 0.00 30.52 4.20
3277 7514 7.378966 TCGCTTGGAATTACTAGATCATAAGG 58.621 38.462 3.03 0.00 0.00 2.69
3278 7515 8.994429 ATCGCTTGGAATTACTAGATCATAAG 57.006 34.615 3.03 0.00 0.00 1.73
3291 7528 7.942341 TCCTGGTATTTATTATCGCTTGGAATT 59.058 33.333 0.00 0.00 0.00 2.17
3292 7529 7.390718 GTCCTGGTATTTATTATCGCTTGGAAT 59.609 37.037 0.00 0.00 0.00 3.01
3293 7530 6.708949 GTCCTGGTATTTATTATCGCTTGGAA 59.291 38.462 0.00 0.00 0.00 3.53
3295 7532 6.231211 AGTCCTGGTATTTATTATCGCTTGG 58.769 40.000 0.00 0.00 0.00 3.61
3298 7535 7.097834 GCTAAGTCCTGGTATTTATTATCGCT 58.902 38.462 0.00 0.00 0.00 4.93
3300 7537 8.827177 TTGCTAAGTCCTGGTATTTATTATCG 57.173 34.615 0.00 0.00 0.00 2.92
3307 7544 9.646522 ATCAAATATTGCTAAGTCCTGGTATTT 57.353 29.630 0.00 0.00 0.00 1.40
3308 7545 9.646522 AATCAAATATTGCTAAGTCCTGGTATT 57.353 29.630 0.00 0.00 0.00 1.89
3309 7546 9.071276 CAATCAAATATTGCTAAGTCCTGGTAT 57.929 33.333 0.00 0.00 0.00 2.73
3311 7548 7.118723 TCAATCAAATATTGCTAAGTCCTGGT 58.881 34.615 0.00 0.00 0.00 4.00
3312 7549 7.572523 TCAATCAAATATTGCTAAGTCCTGG 57.427 36.000 0.00 0.00 0.00 4.45
3314 7551 8.844244 GTGATCAATCAAATATTGCTAAGTCCT 58.156 33.333 0.00 0.00 38.75 3.85
3315 7552 8.623903 TGTGATCAATCAAATATTGCTAAGTCC 58.376 33.333 0.00 0.00 38.75 3.85
3320 7557 9.667989 CGAATTGTGATCAATCAAATATTGCTA 57.332 29.630 0.00 0.00 42.60 3.49
3322 7559 7.436080 ACCGAATTGTGATCAATCAAATATTGC 59.564 33.333 0.00 0.00 42.60 3.56
3330 7567 9.336171 TGAATTATACCGAATTGTGATCAATCA 57.664 29.630 0.00 0.00 42.60 2.57
3359 7596 8.980481 ACCATTTCTATCGAAAACATTCCTAT 57.020 30.769 0.00 0.00 42.03 2.57
3360 7597 8.801882 AACCATTTCTATCGAAAACATTCCTA 57.198 30.769 0.00 0.00 42.03 2.94
3361 7598 7.703058 AACCATTTCTATCGAAAACATTCCT 57.297 32.000 0.00 0.00 42.03 3.36
3362 7599 7.201435 GCAAACCATTTCTATCGAAAACATTCC 60.201 37.037 0.00 0.00 42.03 3.01
3363 7600 7.542130 AGCAAACCATTTCTATCGAAAACATTC 59.458 33.333 0.00 0.00 42.03 2.67
3364 7601 7.378181 AGCAAACCATTTCTATCGAAAACATT 58.622 30.769 0.00 0.00 42.03 2.71
3366 7603 6.325919 AGCAAACCATTTCTATCGAAAACA 57.674 33.333 0.00 0.00 42.03 2.83
3367 7604 7.637709 AAAGCAAACCATTTCTATCGAAAAC 57.362 32.000 0.00 0.00 42.03 2.43
3368 7605 7.307101 GCAAAAGCAAACCATTTCTATCGAAAA 60.307 33.333 0.00 0.00 42.03 2.29
3369 7606 6.145371 GCAAAAGCAAACCATTTCTATCGAAA 59.855 34.615 0.00 0.00 42.83 3.46
3370 7607 5.633182 GCAAAAGCAAACCATTTCTATCGAA 59.367 36.000 0.00 0.00 0.00 3.71
3371 7608 5.160641 GCAAAAGCAAACCATTTCTATCGA 58.839 37.500 0.00 0.00 0.00 3.59
3372 7609 4.922692 TGCAAAAGCAAACCATTTCTATCG 59.077 37.500 0.00 0.00 0.00 2.92
3374 7611 5.609423 TGTGCAAAAGCAAACCATTTCTAT 58.391 33.333 0.00 0.00 0.00 1.98
3375 7612 5.016051 TGTGCAAAAGCAAACCATTTCTA 57.984 34.783 0.00 0.00 0.00 2.10
3377 7614 4.608890 CGATGTGCAAAAGCAAACCATTTC 60.609 41.667 0.00 0.00 0.00 2.17
3378 7615 3.248125 CGATGTGCAAAAGCAAACCATTT 59.752 39.130 0.00 0.00 0.00 2.32
3379 7616 2.801679 CGATGTGCAAAAGCAAACCATT 59.198 40.909 0.00 0.00 0.00 3.16
3381 7618 1.406898 TCGATGTGCAAAAGCAAACCA 59.593 42.857 0.00 0.00 0.00 3.67
3382 7619 2.132740 TCGATGTGCAAAAGCAAACC 57.867 45.000 0.00 0.00 0.00 3.27
3383 7620 3.302415 GGTTTCGATGTGCAAAAGCAAAC 60.302 43.478 5.38 4.73 32.24 2.93
3384 7621 2.863137 GGTTTCGATGTGCAAAAGCAAA 59.137 40.909 5.38 0.00 32.24 3.68
3386 7623 1.406898 TGGTTTCGATGTGCAAAAGCA 59.593 42.857 8.26 8.26 37.87 3.91
3392 9350 8.994429 ATATTAAATTTTGGTTTCGATGTGCA 57.006 26.923 0.00 0.00 0.00 4.57
3393 9351 9.687717 CAATATTAAATTTTGGTTTCGATGTGC 57.312 29.630 0.00 0.00 0.00 4.57
3394 9352 9.687717 GCAATATTAAATTTTGGTTTCGATGTG 57.312 29.630 0.00 0.00 0.00 3.21
3416 9374 9.764363 TTCTTCTGAATTATACGTATCTGCAAT 57.236 29.630 12.24 3.38 0.00 3.56
3417 9375 9.764363 ATTCTTCTGAATTATACGTATCTGCAA 57.236 29.630 12.24 0.78 39.68 4.08
3432 9390 9.965902 AAACACATCTTACCTATTCTTCTGAAT 57.034 29.630 0.00 0.00 44.32 2.57
3435 9393 9.003658 ACAAAACACATCTTACCTATTCTTCTG 57.996 33.333 0.00 0.00 0.00 3.02



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.