Multiple sequence alignment - TraesCS2A01G221300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G221300 chr2A 100.000 3590 0 0 1 3590 210752299 210748710 0.000000e+00 6630
1 TraesCS2A01G221300 chr2A 82.192 1460 183 53 1102 2532 211459936 211461347 0.000000e+00 1184
2 TraesCS2A01G221300 chr2A 94.853 272 14 0 1 272 210774100 210773829 3.310000e-115 425
3 TraesCS2A01G221300 chr2A 87.216 352 37 6 2180 2529 211483528 211483873 9.340000e-106 394
4 TraesCS2A01G221300 chr2A 92.366 262 16 3 3330 3590 79497859 79497601 1.570000e-98 370
5 TraesCS2A01G221300 chr2A 91.729 266 19 2 3325 3590 487368594 487368332 2.040000e-97 366
6 TraesCS2A01G221300 chr2A 91.985 262 19 1 3329 3590 592850984 592850725 2.040000e-97 366
7 TraesCS2A01G221300 chr2A 84.574 376 47 6 2173 2547 211694098 211693733 2.630000e-96 363
8 TraesCS2A01G221300 chr2D 95.174 2611 79 17 272 2865 195424125 195421545 0.000000e+00 4080
9 TraesCS2A01G221300 chr2D 82.687 1444 186 42 1102 2532 195995135 195996527 0.000000e+00 1223
10 TraesCS2A01G221300 chr2D 81.308 963 156 13 1129 2087 196001539 196002481 0.000000e+00 760
11 TraesCS2A01G221300 chr2D 91.960 398 26 4 2938 3330 195369996 195369600 1.460000e-153 553
12 TraesCS2A01G221300 chr2D 85.447 481 66 4 1601 2079 196131003 196130525 6.920000e-137 497
13 TraesCS2A01G221300 chr2D 88.352 352 33 6 2180 2529 196002538 196002883 1.990000e-112 416
14 TraesCS2A01G221300 chr2D 86.350 337 38 4 2183 2518 196223866 196223537 9.480000e-96 361
15 TraesCS2A01G221300 chr2D 86.420 324 38 1 2173 2496 196130321 196130004 2.050000e-92 350
16 TraesCS2A01G221300 chr2D 94.872 78 4 0 2862 2939 195420334 195420257 4.870000e-24 122
17 TraesCS2A01G221300 chr2B 93.684 2074 59 30 776 2825 251771912 251769887 0.000000e+00 3038
18 TraesCS2A01G221300 chr2B 86.338 527 41 14 272 779 251772737 251772223 2.440000e-151 545
19 TraesCS2A01G221300 chr2B 91.457 398 28 4 2938 3330 251769386 251768990 3.150000e-150 542
20 TraesCS2A01G221300 chr2B 86.686 338 35 5 2183 2518 252976581 252976252 2.040000e-97 366
21 TraesCS2A01G221300 chr2B 91.729 266 19 2 3325 3590 714022745 714023007 2.040000e-97 366
22 TraesCS2A01G221300 chr5D 81.403 1468 198 45 1102 2535 565786795 565785369 0.000000e+00 1129
23 TraesCS2A01G221300 chr4A 80.796 1458 207 45 1118 2535 607309180 607310604 0.000000e+00 1074
24 TraesCS2A01G221300 chr4A 95.203 271 13 0 1 271 180863557 180863827 2.560000e-116 429
25 TraesCS2A01G221300 chr4A 94.265 279 16 0 1 279 152352910 152353188 9.210000e-116 427
26 TraesCS2A01G221300 chr4A 91.985 262 19 2 3329 3590 596662254 596661995 2.040000e-97 366
27 TraesCS2A01G221300 chr7A 78.600 1500 232 54 1129 2594 680629922 680628478 0.000000e+00 909
28 TraesCS2A01G221300 chrUn 82.587 982 129 22 1118 2079 67470670 67469711 0.000000e+00 828
29 TraesCS2A01G221300 chrUn 83.476 351 50 4 2186 2535 67469583 67469240 1.610000e-83 320
30 TraesCS2A01G221300 chr3A 95.604 273 12 0 1 273 79337835 79337563 4.260000e-119 438
31 TraesCS2A01G221300 chr3A 95.588 272 12 0 1 272 569058387 569058658 1.530000e-118 436
32 TraesCS2A01G221300 chr3A 94.853 272 14 0 1 272 632148192 632147921 3.310000e-115 425
33 TraesCS2A01G221300 chr3A 94.505 273 15 0 1 273 79339264 79338992 4.290000e-114 422
34 TraesCS2A01G221300 chr3A 95.000 260 11 2 3330 3589 189211528 189211785 1.200000e-109 407
35 TraesCS2A01G221300 chr5A 95.221 272 13 0 1 272 675430326 675430597 7.120000e-117 431
36 TraesCS2A01G221300 chr5A 94.585 277 15 0 1 277 571847130 571846854 2.560000e-116 429
37 TraesCS2A01G221300 chr1A 93.487 261 15 1 3330 3590 213901968 213902226 1.560000e-103 387
38 TraesCS2A01G221300 chr1B 92.366 262 17 3 3329 3590 122648777 122649035 1.570000e-98 370
39 TraesCS2A01G221300 chr3B 92.045 264 18 3 3328 3590 584457292 584457031 5.660000e-98 368
40 TraesCS2A01G221300 chr5B 83.476 351 50 4 2186 2535 707359593 707359250 1.610000e-83 320
41 TraesCS2A01G221300 chr5B 83.193 357 52 4 2180 2535 707391272 707391621 1.610000e-83 320


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G221300 chr2A 210748710 210752299 3589 True 6630.0 6630 100.0000 1 3590 1 chr2A.!!$R2 3589
1 TraesCS2A01G221300 chr2A 211459936 211461347 1411 False 1184.0 1184 82.1920 1102 2532 1 chr2A.!!$F1 1430
2 TraesCS2A01G221300 chr2D 195420257 195424125 3868 True 2101.0 4080 95.0230 272 2939 2 chr2D.!!$R3 2667
3 TraesCS2A01G221300 chr2D 195995135 195996527 1392 False 1223.0 1223 82.6870 1102 2532 1 chr2D.!!$F1 1430
4 TraesCS2A01G221300 chr2D 196001539 196002883 1344 False 588.0 760 84.8300 1129 2529 2 chr2D.!!$F2 1400
5 TraesCS2A01G221300 chr2D 196130004 196131003 999 True 423.5 497 85.9335 1601 2496 2 chr2D.!!$R4 895
6 TraesCS2A01G221300 chr2B 251768990 251772737 3747 True 1375.0 3038 90.4930 272 3330 3 chr2B.!!$R2 3058
7 TraesCS2A01G221300 chr5D 565785369 565786795 1426 True 1129.0 1129 81.4030 1102 2535 1 chr5D.!!$R1 1433
8 TraesCS2A01G221300 chr4A 607309180 607310604 1424 False 1074.0 1074 80.7960 1118 2535 1 chr4A.!!$F3 1417
9 TraesCS2A01G221300 chr7A 680628478 680629922 1444 True 909.0 909 78.6000 1129 2594 1 chr7A.!!$R1 1465
10 TraesCS2A01G221300 chrUn 67469240 67470670 1430 True 574.0 828 83.0315 1118 2535 2 chrUn.!!$R1 1417
11 TraesCS2A01G221300 chr3A 79337563 79339264 1701 True 430.0 438 95.0545 1 273 2 chr3A.!!$R2 272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.102120 CAGTCAGGAGTCGGCTCATC 59.898 60.0 20.37 1.77 43.37 2.92 F
112 113 0.103937 GGAGTCGGCTCATCCTGAAG 59.896 60.0 20.37 0.00 43.37 3.02 F
117 118 0.108615 CGGCTCATCCTGAAGTCGTT 60.109 55.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1016 1371 2.551032 TCCACGCCTCGTATATGTACTG 59.449 50.000 0.00 0.00 38.32 2.74 R
1635 2022 4.849329 GGCACGTACCGCTCGAGG 62.849 72.222 15.58 1.09 37.30 4.63 R
2632 4137 6.903883 TCATCTACTCCTCAAATAAAACGC 57.096 37.500 0.00 0.00 0.00 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.617018 CCATGGTCGGCTTCTCTGGA 61.617 60.000 2.57 0.00 0.00 3.86
81 82 0.250234 CATGGTCGGCTTCTCTGGAA 59.750 55.000 0.00 0.00 0.00 3.53
94 95 3.059982 TGGAAGTCGCCAGTCAGG 58.940 61.111 0.00 0.00 41.84 3.86
95 96 1.533033 TGGAAGTCGCCAGTCAGGA 60.533 57.895 0.00 0.00 41.22 3.86
96 97 1.216710 GGAAGTCGCCAGTCAGGAG 59.783 63.158 0.00 0.00 41.22 3.69
97 98 1.536943 GGAAGTCGCCAGTCAGGAGT 61.537 60.000 0.00 0.00 41.22 3.85
98 99 0.109039 GAAGTCGCCAGTCAGGAGTC 60.109 60.000 0.00 0.00 41.22 3.36
99 100 1.867919 AAGTCGCCAGTCAGGAGTCG 61.868 60.000 0.00 0.00 41.22 4.18
100 101 3.062466 TCGCCAGTCAGGAGTCGG 61.062 66.667 0.00 0.00 41.22 4.79
101 102 4.803426 CGCCAGTCAGGAGTCGGC 62.803 72.222 0.00 0.00 41.22 5.54
102 103 3.386237 GCCAGTCAGGAGTCGGCT 61.386 66.667 0.00 0.00 41.22 5.52
103 104 2.888863 CCAGTCAGGAGTCGGCTC 59.111 66.667 8.99 8.99 41.22 4.70
104 105 1.979155 CCAGTCAGGAGTCGGCTCA 60.979 63.158 20.37 0.00 43.37 4.26
105 106 1.326213 CCAGTCAGGAGTCGGCTCAT 61.326 60.000 20.37 9.42 43.37 2.90
106 107 0.102120 CAGTCAGGAGTCGGCTCATC 59.898 60.000 20.37 1.77 43.37 2.92
107 108 1.040339 AGTCAGGAGTCGGCTCATCC 61.040 60.000 20.37 1.88 43.37 3.51
108 109 1.040339 GTCAGGAGTCGGCTCATCCT 61.040 60.000 20.37 4.70 44.41 3.24
109 110 3.947173 AGGAGTCGGCTCATCCTG 58.053 61.111 20.37 0.00 41.95 3.86
110 111 1.307986 AGGAGTCGGCTCATCCTGA 59.692 57.895 20.37 0.00 41.95 3.86
111 112 0.324738 AGGAGTCGGCTCATCCTGAA 60.325 55.000 20.37 0.00 41.95 3.02
112 113 0.103937 GGAGTCGGCTCATCCTGAAG 59.896 60.000 20.37 0.00 43.37 3.02
113 114 0.820871 GAGTCGGCTCATCCTGAAGT 59.179 55.000 13.26 0.00 41.29 3.01
114 115 0.820871 AGTCGGCTCATCCTGAAGTC 59.179 55.000 0.00 0.00 0.00 3.01
115 116 0.526524 GTCGGCTCATCCTGAAGTCG 60.527 60.000 0.00 0.00 0.00 4.18
116 117 0.965866 TCGGCTCATCCTGAAGTCGT 60.966 55.000 0.00 0.00 29.49 4.34
117 118 0.108615 CGGCTCATCCTGAAGTCGTT 60.109 55.000 0.00 0.00 0.00 3.85
118 119 1.646189 GGCTCATCCTGAAGTCGTTC 58.354 55.000 0.00 0.00 0.00 3.95
119 120 1.205893 GGCTCATCCTGAAGTCGTTCT 59.794 52.381 0.00 0.00 33.38 3.01
120 121 2.535331 GCTCATCCTGAAGTCGTTCTC 58.465 52.381 0.00 0.00 33.38 2.87
121 122 2.791567 CTCATCCTGAAGTCGTTCTCG 58.208 52.381 0.00 0.00 33.38 4.04
122 123 1.472878 TCATCCTGAAGTCGTTCTCGG 59.527 52.381 0.00 0.00 37.69 4.63
123 124 0.818296 ATCCTGAAGTCGTTCTCGGG 59.182 55.000 2.91 2.91 37.69 5.14
124 125 1.215647 CCTGAAGTCGTTCTCGGGG 59.784 63.158 0.00 0.00 37.69 5.73
125 126 1.446272 CTGAAGTCGTTCTCGGGGC 60.446 63.158 0.00 0.00 37.69 5.80
126 127 1.878656 CTGAAGTCGTTCTCGGGGCT 61.879 60.000 0.00 0.00 37.69 5.19
127 128 1.153804 GAAGTCGTTCTCGGGGCTC 60.154 63.158 0.00 0.00 37.69 4.70
128 129 2.868999 GAAGTCGTTCTCGGGGCTCG 62.869 65.000 0.00 0.00 40.90 5.03
129 130 4.493747 GTCGTTCTCGGGGCTCGG 62.494 72.222 7.05 0.00 39.77 4.63
150 151 3.197790 CGAATGGGCAGTCGGCTG 61.198 66.667 14.01 14.01 44.05 4.85
167 168 4.863925 GCCTCGCAGCCGACTCTC 62.864 72.222 0.00 0.00 38.82 3.20
168 169 3.443925 CCTCGCAGCCGACTCTCA 61.444 66.667 0.00 0.00 38.82 3.27
169 170 2.101965 CTCGCAGCCGACTCTCAG 59.898 66.667 0.00 0.00 38.82 3.35
170 171 2.359975 TCGCAGCCGACTCTCAGA 60.360 61.111 0.00 0.00 38.82 3.27
171 172 1.927608 CTCGCAGCCGACTCTCAGAA 61.928 60.000 0.00 0.00 38.82 3.02
172 173 1.515952 CGCAGCCGACTCTCAGAAG 60.516 63.158 0.00 0.00 36.29 2.85
173 174 1.153667 GCAGCCGACTCTCAGAAGG 60.154 63.158 0.00 0.00 0.00 3.46
177 178 2.202676 CGACTCTCAGAAGGCGGC 60.203 66.667 0.00 0.00 44.22 6.53
178 179 2.705821 CGACTCTCAGAAGGCGGCT 61.706 63.158 5.25 5.25 44.22 5.52
179 180 1.140804 GACTCTCAGAAGGCGGCTC 59.859 63.158 13.70 6.11 0.00 4.70
180 181 1.304879 ACTCTCAGAAGGCGGCTCT 60.305 57.895 13.70 8.61 0.00 4.09
181 182 0.902516 ACTCTCAGAAGGCGGCTCTT 60.903 55.000 13.70 0.00 0.00 2.85
182 183 0.179113 CTCTCAGAAGGCGGCTCTTC 60.179 60.000 13.70 17.89 42.43 2.87
183 184 1.518133 CTCAGAAGGCGGCTCTTCG 60.518 63.158 13.70 15.25 45.60 3.79
184 185 2.219325 CTCAGAAGGCGGCTCTTCGT 62.219 60.000 13.70 0.00 45.60 3.85
185 186 1.807573 CAGAAGGCGGCTCTTCGTC 60.808 63.158 13.70 5.61 45.60 4.20
186 187 2.509561 GAAGGCGGCTCTTCGTCC 60.510 66.667 13.70 0.00 35.03 4.79
187 188 2.997897 AAGGCGGCTCTTCGTCCT 60.998 61.111 13.70 0.00 37.93 3.85
188 189 3.302347 AAGGCGGCTCTTCGTCCTG 62.302 63.158 13.70 0.00 37.00 3.86
189 190 4.821589 GGCGGCTCTTCGTCCTGG 62.822 72.222 0.00 0.00 0.00 4.45
190 191 4.821589 GCGGCTCTTCGTCCTGGG 62.822 72.222 0.00 0.00 0.00 4.45
191 192 4.148825 CGGCTCTTCGTCCTGGGG 62.149 72.222 0.00 0.00 0.00 4.96
192 193 3.003763 GGCTCTTCGTCCTGGGGT 61.004 66.667 0.00 0.00 0.00 4.95
193 194 2.579738 GCTCTTCGTCCTGGGGTC 59.420 66.667 0.00 0.00 0.00 4.46
194 195 1.985116 GCTCTTCGTCCTGGGGTCT 60.985 63.158 0.00 0.00 0.00 3.85
195 196 1.545706 GCTCTTCGTCCTGGGGTCTT 61.546 60.000 0.00 0.00 0.00 3.01
196 197 0.247736 CTCTTCGTCCTGGGGTCTTG 59.752 60.000 0.00 0.00 0.00 3.02
197 198 0.178944 TCTTCGTCCTGGGGTCTTGA 60.179 55.000 0.00 0.00 0.00 3.02
198 199 0.247736 CTTCGTCCTGGGGTCTTGAG 59.752 60.000 0.00 0.00 0.00 3.02
199 200 1.192146 TTCGTCCTGGGGTCTTGAGG 61.192 60.000 0.00 0.00 0.00 3.86
200 201 2.660064 CGTCCTGGGGTCTTGAGGG 61.660 68.421 0.00 0.00 0.00 4.30
201 202 2.124996 TCCTGGGGTCTTGAGGGG 59.875 66.667 0.00 0.00 0.00 4.79
202 203 2.204151 CCTGGGGTCTTGAGGGGT 60.204 66.667 0.00 0.00 0.00 4.95
203 204 2.606587 CCTGGGGTCTTGAGGGGTG 61.607 68.421 0.00 0.00 0.00 4.61
204 205 3.256960 TGGGGTCTTGAGGGGTGC 61.257 66.667 0.00 0.00 0.00 5.01
205 206 3.256960 GGGGTCTTGAGGGGTGCA 61.257 66.667 0.00 0.00 0.00 4.57
206 207 2.352805 GGGTCTTGAGGGGTGCAG 59.647 66.667 0.00 0.00 0.00 4.41
207 208 2.224159 GGGTCTTGAGGGGTGCAGA 61.224 63.158 0.00 0.00 0.00 4.26
208 209 1.003233 GGTCTTGAGGGGTGCAGAC 60.003 63.158 0.00 0.00 0.00 3.51
209 210 1.484444 GGTCTTGAGGGGTGCAGACT 61.484 60.000 0.00 0.00 0.00 3.24
210 211 1.267121 GTCTTGAGGGGTGCAGACTA 58.733 55.000 0.00 0.00 0.00 2.59
211 212 1.066787 GTCTTGAGGGGTGCAGACTAC 60.067 57.143 0.00 0.00 0.00 2.73
212 213 0.250513 CTTGAGGGGTGCAGACTACC 59.749 60.000 0.00 0.00 37.48 3.18
217 218 3.630289 GGTGCAGACTACCCCGAT 58.370 61.111 0.00 0.00 31.89 4.18
218 219 1.144057 GGTGCAGACTACCCCGATG 59.856 63.158 0.00 0.00 31.89 3.84
219 220 1.614241 GGTGCAGACTACCCCGATGT 61.614 60.000 0.00 0.00 31.89 3.06
220 221 0.179108 GTGCAGACTACCCCGATGTC 60.179 60.000 0.00 0.00 0.00 3.06
221 222 0.324368 TGCAGACTACCCCGATGTCT 60.324 55.000 0.00 0.00 41.15 3.41
222 223 0.824759 GCAGACTACCCCGATGTCTT 59.175 55.000 0.00 0.00 38.80 3.01
223 224 1.471676 GCAGACTACCCCGATGTCTTG 60.472 57.143 0.00 0.00 38.80 3.02
224 225 2.100197 CAGACTACCCCGATGTCTTGA 58.900 52.381 0.00 0.00 38.80 3.02
225 226 2.496070 CAGACTACCCCGATGTCTTGAA 59.504 50.000 0.00 0.00 38.80 2.69
226 227 3.056107 CAGACTACCCCGATGTCTTGAAA 60.056 47.826 0.00 0.00 38.80 2.69
227 228 3.195825 AGACTACCCCGATGTCTTGAAAG 59.804 47.826 0.00 0.00 37.76 2.62
228 229 2.236395 ACTACCCCGATGTCTTGAAAGG 59.764 50.000 0.00 0.00 0.00 3.11
229 230 1.064825 ACCCCGATGTCTTGAAAGGT 58.935 50.000 0.00 0.00 0.00 3.50
230 231 1.423921 ACCCCGATGTCTTGAAAGGTT 59.576 47.619 0.00 0.00 0.00 3.50
231 232 2.084546 CCCCGATGTCTTGAAAGGTTC 58.915 52.381 0.00 0.00 0.00 3.62
232 233 2.290323 CCCCGATGTCTTGAAAGGTTCT 60.290 50.000 0.00 0.00 0.00 3.01
233 234 2.744202 CCCGATGTCTTGAAAGGTTCTG 59.256 50.000 0.00 0.00 0.00 3.02
234 235 2.744202 CCGATGTCTTGAAAGGTTCTGG 59.256 50.000 0.00 0.00 0.00 3.86
235 236 2.744202 CGATGTCTTGAAAGGTTCTGGG 59.256 50.000 0.00 0.00 0.00 4.45
236 237 3.756117 GATGTCTTGAAAGGTTCTGGGT 58.244 45.455 0.00 0.00 0.00 4.51
237 238 3.208747 TGTCTTGAAAGGTTCTGGGTC 57.791 47.619 0.00 0.00 0.00 4.46
238 239 2.777692 TGTCTTGAAAGGTTCTGGGTCT 59.222 45.455 0.00 0.00 0.00 3.85
239 240 3.142174 GTCTTGAAAGGTTCTGGGTCTG 58.858 50.000 0.00 0.00 0.00 3.51
240 241 2.106511 TCTTGAAAGGTTCTGGGTCTGG 59.893 50.000 0.00 0.00 0.00 3.86
241 242 0.771127 TGAAAGGTTCTGGGTCTGGG 59.229 55.000 0.00 0.00 0.00 4.45
242 243 0.771755 GAAAGGTTCTGGGTCTGGGT 59.228 55.000 0.00 0.00 0.00 4.51
243 244 1.145119 GAAAGGTTCTGGGTCTGGGTT 59.855 52.381 0.00 0.00 0.00 4.11
244 245 0.771755 AAGGTTCTGGGTCTGGGTTC 59.228 55.000 0.00 0.00 0.00 3.62
245 246 1.003718 GGTTCTGGGTCTGGGTTCG 60.004 63.158 0.00 0.00 0.00 3.95
246 247 1.671379 GTTCTGGGTCTGGGTTCGC 60.671 63.158 0.00 0.00 0.00 4.70
247 248 2.890766 TTCTGGGTCTGGGTTCGCC 61.891 63.158 0.00 0.00 0.00 5.54
248 249 3.322466 CTGGGTCTGGGTTCGCCT 61.322 66.667 0.00 0.00 37.45 5.52
249 250 1.987855 CTGGGTCTGGGTTCGCCTA 60.988 63.158 0.00 0.00 37.45 3.93
250 251 2.240162 CTGGGTCTGGGTTCGCCTAC 62.240 65.000 0.00 0.00 37.45 3.18
251 252 2.582978 GGTCTGGGTTCGCCTACC 59.417 66.667 0.00 0.00 37.45 3.18
257 258 2.125793 GGTTCGCCTACCCGTGAC 60.126 66.667 0.00 0.00 31.71 3.67
258 259 2.125793 GTTCGCCTACCCGTGACC 60.126 66.667 0.00 0.00 0.00 4.02
259 260 3.384532 TTCGCCTACCCGTGACCC 61.385 66.667 0.00 0.00 0.00 4.46
260 261 4.682334 TCGCCTACCCGTGACCCA 62.682 66.667 0.00 0.00 0.00 4.51
261 262 3.467226 CGCCTACCCGTGACCCAT 61.467 66.667 0.00 0.00 0.00 4.00
262 263 2.995547 GCCTACCCGTGACCCATT 59.004 61.111 0.00 0.00 0.00 3.16
263 264 1.678598 CGCCTACCCGTGACCCATTA 61.679 60.000 0.00 0.00 0.00 1.90
264 265 0.179065 GCCTACCCGTGACCCATTAC 60.179 60.000 0.00 0.00 0.00 1.89
265 266 1.492764 CCTACCCGTGACCCATTACT 58.507 55.000 0.00 0.00 0.00 2.24
266 267 1.411612 CCTACCCGTGACCCATTACTC 59.588 57.143 0.00 0.00 0.00 2.59
267 268 1.411612 CTACCCGTGACCCATTACTCC 59.588 57.143 0.00 0.00 0.00 3.85
268 269 1.143183 CCCGTGACCCATTACTCCG 59.857 63.158 0.00 0.00 0.00 4.63
269 270 1.324740 CCCGTGACCCATTACTCCGA 61.325 60.000 0.00 0.00 0.00 4.55
270 271 0.179119 CCGTGACCCATTACTCCGAC 60.179 60.000 0.00 0.00 0.00 4.79
274 275 1.972075 TGACCCATTACTCCGACAACA 59.028 47.619 0.00 0.00 0.00 3.33
292 293 4.172505 CAACAATCTCTTCTCTCACGAGG 58.827 47.826 0.00 0.00 37.86 4.63
404 405 4.134563 ACAACAAGGTGTACTAAAGCAGG 58.865 43.478 0.00 0.00 0.00 4.85
415 416 7.361799 GGTGTACTAAAGCAGGGACAATTTAAG 60.362 40.741 0.00 0.00 0.00 1.85
472 473 9.191995 AGTTTTTATCATTTTCTTTTTCGCGAT 57.808 25.926 10.88 0.00 0.00 4.58
488 489 4.109766 TCGCGATTAGTACAACCAATCAG 58.890 43.478 3.71 0.00 0.00 2.90
579 596 1.147376 TGTGACCGGAACAAGTGGG 59.853 57.895 9.46 0.00 0.00 4.61
587 604 1.566404 GGAACAAGTGGGCGTTTTTG 58.434 50.000 0.00 0.00 0.00 2.44
644 661 5.964958 ATTAAATCACTGGTCCTTGTGTG 57.035 39.130 12.90 6.90 35.82 3.82
684 701 7.630082 AGTGGTAGAATATTGCAAGAAACCTA 58.370 34.615 4.94 1.10 0.00 3.08
823 1157 0.795085 CGTGAAGCCTCTTCAGCAAG 59.205 55.000 9.29 0.00 0.00 4.01
824 1158 1.606480 CGTGAAGCCTCTTCAGCAAGA 60.606 52.381 9.29 0.00 37.11 3.02
825 1159 2.498167 GTGAAGCCTCTTCAGCAAGAA 58.502 47.619 9.29 0.00 38.23 2.52
826 1160 2.880890 GTGAAGCCTCTTCAGCAAGAAA 59.119 45.455 9.29 0.00 38.23 2.52
828 1162 4.022503 GTGAAGCCTCTTCAGCAAGAAAAT 60.023 41.667 9.29 0.00 38.23 1.82
829 1163 4.586001 TGAAGCCTCTTCAGCAAGAAAATT 59.414 37.500 5.25 0.00 38.23 1.82
830 1164 4.780275 AGCCTCTTCAGCAAGAAAATTC 57.220 40.909 0.00 0.00 38.23 2.17
832 1166 3.671702 GCCTCTTCAGCAAGAAAATTCGG 60.672 47.826 0.00 0.00 38.23 4.30
841 1192 7.825681 TCAGCAAGAAAATTCGGAATGAAATA 58.174 30.769 3.59 0.00 40.71 1.40
843 1194 8.589629 CAGCAAGAAAATTCGGAATGAAATAAG 58.410 33.333 3.59 0.00 40.71 1.73
872 1223 2.076863 GAGTTGAAGGACGATTGGGTG 58.923 52.381 0.00 0.00 0.00 4.61
904 1255 2.715737 AAACAGAGACGACTCAGCTC 57.284 50.000 16.96 0.00 44.79 4.09
926 1277 2.789893 GAGTCAATCGGTCGACATTAGC 59.210 50.000 18.91 5.83 34.48 3.09
995 1350 3.272439 ACAACTTCGTCGATCGTAACA 57.728 42.857 15.94 0.00 40.80 2.41
1016 1371 2.239907 AGGAAATGAACCCTAGAGCACC 59.760 50.000 0.00 0.00 0.00 5.01
1095 1452 3.716195 CTGACCACCATGGCCGGA 61.716 66.667 24.23 5.14 42.67 5.14
1572 1959 0.115152 AAGGCAAGAAGGGAAAGGGG 59.885 55.000 0.00 0.00 0.00 4.79
1578 1965 1.453928 GAAGGGAAAGGGGCATCGG 60.454 63.158 0.00 0.00 0.00 4.18
2274 2812 0.321298 CCACCAACTACAAGGACCGG 60.321 60.000 0.00 0.00 0.00 5.28
2382 2920 2.695666 CAGGAACTATCACCTCGTGGAT 59.304 50.000 11.17 0.00 36.02 3.41
2765 4270 5.618056 TTGTTCTGATTCAGATGCTTCAC 57.382 39.130 16.82 11.22 40.39 3.18
2777 4282 5.931146 TCAGATGCTTCACTTCTTCTTCTTC 59.069 40.000 2.07 0.00 30.62 2.87
2779 4284 6.427547 CAGATGCTTCACTTCTTCTTCTTCTT 59.572 38.462 2.07 0.00 30.62 2.52
2802 4307 7.815549 TCTTGTACTCGCTGATTTGTTATGTTA 59.184 33.333 0.00 0.00 0.00 2.41
2816 4321 8.586570 TTTGTTATGTTAAAATGGCAAGTCAG 57.413 30.769 0.00 0.00 0.00 3.51
2819 4324 7.013750 TGTTATGTTAAAATGGCAAGTCAGTCA 59.986 33.333 0.00 0.00 0.00 3.41
2874 5769 4.151070 CACAAAGCACTTATACGCACTTG 58.849 43.478 0.00 0.00 32.51 3.16
2986 6093 3.197549 ACAACCATGCAAACTGAAAACCT 59.802 39.130 0.00 0.00 0.00 3.50
2995 6102 1.459450 ACTGAAAACCTTGCACACGT 58.541 45.000 0.00 0.00 0.00 4.49
2998 6105 1.400142 TGAAAACCTTGCACACGTCAG 59.600 47.619 0.00 0.00 0.00 3.51
2999 6106 1.400494 GAAAACCTTGCACACGTCAGT 59.600 47.619 0.00 0.00 0.00 3.41
3005 6112 1.258982 CTTGCACACGTCAGTCAAGTC 59.741 52.381 0.00 0.00 31.99 3.01
3018 6125 2.128035 GTCAAGTCACCAAGAGTCGTG 58.872 52.381 0.00 0.00 0.00 4.35
3022 6129 4.116961 CAAGTCACCAAGAGTCGTGTTTA 58.883 43.478 5.33 0.00 0.00 2.01
3044 6151 2.949714 GTCAACAACATCTGTGGACG 57.050 50.000 0.00 0.00 46.64 4.79
3053 6160 2.028112 ACATCTGTGGACGCACTTATGT 60.028 45.455 0.00 0.00 0.00 2.29
3062 6169 1.447140 GCACTTATGTGACGCGGGA 60.447 57.895 12.47 0.00 46.55 5.14
3112 6219 4.023193 GGTACCGGCAAAATCTCATATTGG 60.023 45.833 0.00 0.00 0.00 3.16
3139 6246 0.248825 CTGTCGATCTTCCGCCTCTG 60.249 60.000 0.00 0.00 0.00 3.35
3155 6262 2.329379 CTCTGTCGCAAGTGTACTTCC 58.671 52.381 0.00 0.00 33.11 3.46
3158 6265 3.131396 CTGTCGCAAGTGTACTTCCTTT 58.869 45.455 0.00 0.00 33.11 3.11
3171 6278 9.073475 AGTGTACTTCCTTTTTAAATATGTGCA 57.927 29.630 0.00 0.00 0.00 4.57
3178 6285 8.248904 TCCTTTTTAAATATGTGCATAGCCAT 57.751 30.769 0.00 0.00 0.00 4.40
3190 6297 0.862554 ATAGCCATCTGCCCCCAAAT 59.137 50.000 0.00 0.00 42.71 2.32
3195 6302 2.827921 GCCATCTGCCCCCAAATAATAG 59.172 50.000 0.00 0.00 0.00 1.73
3214 6321 2.200170 GACCACGAGCCAACATTGCC 62.200 60.000 0.00 0.00 0.00 4.52
3221 6332 0.544833 AGCCAACATTGCCCATTGGA 60.545 50.000 3.62 0.00 44.84 3.53
3268 6380 3.120546 CGGACAACATCACTGACATTGTC 60.121 47.826 19.99 19.99 45.40 3.18
3284 6396 3.157949 TCGCCACACACCACCTCA 61.158 61.111 0.00 0.00 0.00 3.86
3295 6407 1.669115 CCACCTCAGCAACTCCACG 60.669 63.158 0.00 0.00 0.00 4.94
3309 6421 2.461110 CCACGCCGTTATGCAGGAC 61.461 63.158 0.00 0.00 0.00 3.85
3313 6425 1.522569 GCCGTTATGCAGGACCTCT 59.477 57.895 0.00 0.00 0.00 3.69
3321 6433 3.211288 CAGGACCTCTGCTACCCG 58.789 66.667 0.00 0.00 36.60 5.28
3330 6442 0.827925 TCTGCTACCCGCCTCTATGG 60.828 60.000 0.00 0.00 38.05 2.74
3344 6456 5.104259 CCTCTATGGCCCTATTTGGATAC 57.896 47.826 0.00 0.00 38.35 2.24
3345 6457 4.785376 CCTCTATGGCCCTATTTGGATACT 59.215 45.833 0.00 0.00 38.35 2.12
3346 6458 5.104735 CCTCTATGGCCCTATTTGGATACTC 60.105 48.000 0.00 0.00 38.35 2.59
3347 6459 5.665701 TCTATGGCCCTATTTGGATACTCT 58.334 41.667 0.00 0.00 38.35 3.24
3348 6460 6.811574 TCTATGGCCCTATTTGGATACTCTA 58.188 40.000 0.00 0.00 38.35 2.43
3349 6461 7.253421 TCTATGGCCCTATTTGGATACTCTAA 58.747 38.462 0.00 0.00 38.35 2.10
3350 6462 5.562298 TGGCCCTATTTGGATACTCTAAC 57.438 43.478 0.00 0.00 38.35 2.34
3351 6463 5.224441 TGGCCCTATTTGGATACTCTAACT 58.776 41.667 0.00 0.00 38.35 2.24
3352 6464 5.307196 TGGCCCTATTTGGATACTCTAACTC 59.693 44.000 0.00 0.00 38.35 3.01
3353 6465 5.307196 GGCCCTATTTGGATACTCTAACTCA 59.693 44.000 0.00 0.00 38.35 3.41
3354 6466 6.459923 GCCCTATTTGGATACTCTAACTCAG 58.540 44.000 0.00 0.00 38.35 3.35
3355 6467 6.042208 GCCCTATTTGGATACTCTAACTCAGT 59.958 42.308 0.00 0.00 38.35 3.41
3356 6468 7.419172 GCCCTATTTGGATACTCTAACTCAGTT 60.419 40.741 0.00 0.00 38.35 3.16
3357 6469 9.144298 CCCTATTTGGATACTCTAACTCAGTTA 57.856 37.037 0.00 0.00 38.35 2.24
3404 6516 9.585369 ACCTTAAACTAACTCTAGACTAACACT 57.415 33.333 0.00 0.00 0.00 3.55
3409 6521 8.930846 AACTAACTCTAGACTAACACTAACCA 57.069 34.615 0.00 0.00 0.00 3.67
3410 6522 8.930846 ACTAACTCTAGACTAACACTAACCAA 57.069 34.615 0.00 0.00 0.00 3.67
3411 6523 9.359653 ACTAACTCTAGACTAACACTAACCAAA 57.640 33.333 0.00 0.00 0.00 3.28
3412 6524 9.843334 CTAACTCTAGACTAACACTAACCAAAG 57.157 37.037 0.00 0.00 0.00 2.77
3413 6525 8.474710 AACTCTAGACTAACACTAACCAAAGA 57.525 34.615 0.00 0.00 0.00 2.52
3414 6526 8.113173 ACTCTAGACTAACACTAACCAAAGAG 57.887 38.462 0.00 0.00 0.00 2.85
3415 6527 6.921914 TCTAGACTAACACTAACCAAAGAGC 58.078 40.000 0.00 0.00 0.00 4.09
3416 6528 5.810080 AGACTAACACTAACCAAAGAGCT 57.190 39.130 0.00 0.00 0.00 4.09
3417 6529 5.542779 AGACTAACACTAACCAAAGAGCTG 58.457 41.667 0.00 0.00 0.00 4.24
3418 6530 5.070580 AGACTAACACTAACCAAAGAGCTGT 59.929 40.000 0.00 0.00 0.00 4.40
3419 6531 5.681639 ACTAACACTAACCAAAGAGCTGTT 58.318 37.500 0.00 0.00 0.00 3.16
3420 6532 6.120220 ACTAACACTAACCAAAGAGCTGTTT 58.880 36.000 2.40 2.40 0.00 2.83
3421 6533 4.900635 ACACTAACCAAAGAGCTGTTTG 57.099 40.909 25.33 25.33 37.20 2.93
3429 6541 4.691860 CAAAGAGCTGTTTGGATGGTAG 57.308 45.455 24.75 0.55 34.34 3.18
3430 6542 3.356529 AAGAGCTGTTTGGATGGTAGG 57.643 47.619 0.00 0.00 0.00 3.18
3431 6543 1.561542 AGAGCTGTTTGGATGGTAGGG 59.438 52.381 0.00 0.00 0.00 3.53
3432 6544 1.282157 GAGCTGTTTGGATGGTAGGGT 59.718 52.381 0.00 0.00 0.00 4.34
3433 6545 1.710809 AGCTGTTTGGATGGTAGGGTT 59.289 47.619 0.00 0.00 0.00 4.11
3434 6546 2.916934 AGCTGTTTGGATGGTAGGGTTA 59.083 45.455 0.00 0.00 0.00 2.85
3435 6547 3.054361 AGCTGTTTGGATGGTAGGGTTAG 60.054 47.826 0.00 0.00 0.00 2.34
3436 6548 3.054655 GCTGTTTGGATGGTAGGGTTAGA 60.055 47.826 0.00 0.00 0.00 2.10
3437 6549 4.385310 GCTGTTTGGATGGTAGGGTTAGAT 60.385 45.833 0.00 0.00 0.00 1.98
3438 6550 5.755849 CTGTTTGGATGGTAGGGTTAGATT 58.244 41.667 0.00 0.00 0.00 2.40
3439 6551 5.505780 TGTTTGGATGGTAGGGTTAGATTG 58.494 41.667 0.00 0.00 0.00 2.67
3440 6552 5.251932 TGTTTGGATGGTAGGGTTAGATTGA 59.748 40.000 0.00 0.00 0.00 2.57
3441 6553 5.367945 TTGGATGGTAGGGTTAGATTGAC 57.632 43.478 0.00 0.00 0.00 3.18
3442 6554 4.367166 TGGATGGTAGGGTTAGATTGACA 58.633 43.478 0.00 0.00 0.00 3.58
3443 6555 4.785914 TGGATGGTAGGGTTAGATTGACAA 59.214 41.667 0.00 0.00 0.00 3.18
3444 6556 5.431731 TGGATGGTAGGGTTAGATTGACAAT 59.568 40.000 0.00 0.00 0.00 2.71
3445 6557 6.617784 TGGATGGTAGGGTTAGATTGACAATA 59.382 38.462 0.00 0.00 0.00 1.90
3446 6558 7.128109 TGGATGGTAGGGTTAGATTGACAATAA 59.872 37.037 0.00 0.00 0.00 1.40
3447 6559 7.996644 GGATGGTAGGGTTAGATTGACAATAAA 59.003 37.037 0.00 0.00 0.00 1.40
3448 6560 9.574516 GATGGTAGGGTTAGATTGACAATAAAT 57.425 33.333 0.00 0.00 0.00 1.40
3479 6591 9.748708 TTTTTCTCAATCATTTGACTACTTTGG 57.251 29.630 0.00 0.00 36.94 3.28
3480 6592 8.690203 TTTCTCAATCATTTGACTACTTTGGA 57.310 30.769 0.00 0.00 36.94 3.53
3481 6593 7.672983 TCTCAATCATTTGACTACTTTGGAC 57.327 36.000 0.00 0.00 36.94 4.02
3482 6594 6.655003 TCTCAATCATTTGACTACTTTGGACC 59.345 38.462 0.00 0.00 36.94 4.46
3483 6595 6.303054 TCAATCATTTGACTACTTTGGACCA 58.697 36.000 0.00 0.00 36.94 4.02
3484 6596 6.947733 TCAATCATTTGACTACTTTGGACCAT 59.052 34.615 0.00 0.00 36.94 3.55
3485 6597 6.764308 ATCATTTGACTACTTTGGACCATG 57.236 37.500 0.00 0.00 0.00 3.66
3486 6598 5.630121 TCATTTGACTACTTTGGACCATGT 58.370 37.500 0.00 0.03 0.00 3.21
3487 6599 6.068010 TCATTTGACTACTTTGGACCATGTT 58.932 36.000 0.00 0.00 0.00 2.71
3488 6600 6.549364 TCATTTGACTACTTTGGACCATGTTT 59.451 34.615 0.00 0.00 0.00 2.83
3489 6601 7.721842 TCATTTGACTACTTTGGACCATGTTTA 59.278 33.333 0.00 0.00 0.00 2.01
3490 6602 7.883391 TTTGACTACTTTGGACCATGTTTAA 57.117 32.000 0.00 0.00 0.00 1.52
3491 6603 7.883391 TTGACTACTTTGGACCATGTTTAAA 57.117 32.000 0.00 0.00 0.00 1.52
3492 6604 8.472007 TTGACTACTTTGGACCATGTTTAAAT 57.528 30.769 0.00 0.00 0.00 1.40
3493 6605 7.881142 TGACTACTTTGGACCATGTTTAAATG 58.119 34.615 0.00 0.00 0.00 2.32
3494 6606 7.721842 TGACTACTTTGGACCATGTTTAAATGA 59.278 33.333 0.00 0.00 0.00 2.57
3495 6607 8.110860 ACTACTTTGGACCATGTTTAAATGAG 57.889 34.615 0.00 0.00 0.00 2.90
3496 6608 7.942341 ACTACTTTGGACCATGTTTAAATGAGA 59.058 33.333 0.00 0.00 0.00 3.27
3497 6609 7.219484 ACTTTGGACCATGTTTAAATGAGAG 57.781 36.000 0.00 0.00 0.00 3.20
3498 6610 6.209391 ACTTTGGACCATGTTTAAATGAGAGG 59.791 38.462 0.00 0.00 0.00 3.69
3499 6611 4.599041 TGGACCATGTTTAAATGAGAGGG 58.401 43.478 0.00 0.00 0.00 4.30
3500 6612 4.290985 TGGACCATGTTTAAATGAGAGGGA 59.709 41.667 0.00 0.00 0.00 4.20
3501 6613 5.044179 TGGACCATGTTTAAATGAGAGGGAT 60.044 40.000 0.00 0.00 0.00 3.85
3502 6614 6.159575 TGGACCATGTTTAAATGAGAGGGATA 59.840 38.462 0.00 0.00 0.00 2.59
3503 6615 7.060421 GGACCATGTTTAAATGAGAGGGATAA 58.940 38.462 0.00 0.00 0.00 1.75
3504 6616 7.013369 GGACCATGTTTAAATGAGAGGGATAAC 59.987 40.741 0.00 0.00 0.00 1.89
3505 6617 7.643123 ACCATGTTTAAATGAGAGGGATAACT 58.357 34.615 0.00 0.00 0.00 2.24
3506 6618 8.116026 ACCATGTTTAAATGAGAGGGATAACTT 58.884 33.333 0.00 0.00 0.00 2.66
3507 6619 8.971073 CCATGTTTAAATGAGAGGGATAACTTT 58.029 33.333 0.00 0.00 0.00 2.66
3540 6652 5.997384 TTTTCTAGTGGACCTAGGAGAAC 57.003 43.478 17.98 9.94 43.00 3.01
3541 6653 4.949966 TTCTAGTGGACCTAGGAGAACT 57.050 45.455 17.98 16.56 43.00 3.01
3542 6654 6.398655 TTTCTAGTGGACCTAGGAGAACTA 57.601 41.667 17.98 16.79 43.00 2.24
3543 6655 6.398655 TTCTAGTGGACCTAGGAGAACTAA 57.601 41.667 17.98 4.93 43.00 2.24
3544 6656 5.753716 TCTAGTGGACCTAGGAGAACTAAC 58.246 45.833 17.98 3.76 43.00 2.34
3545 6657 3.710724 AGTGGACCTAGGAGAACTAACC 58.289 50.000 17.98 6.01 0.00 2.85
3546 6658 2.765135 GTGGACCTAGGAGAACTAACCC 59.235 54.545 17.98 2.83 0.00 4.11
3547 6659 2.384375 TGGACCTAGGAGAACTAACCCA 59.616 50.000 17.98 5.32 0.00 4.51
3548 6660 3.181404 TGGACCTAGGAGAACTAACCCAA 60.181 47.826 17.98 0.00 0.00 4.12
3549 6661 3.842436 GGACCTAGGAGAACTAACCCAAA 59.158 47.826 17.98 0.00 0.00 3.28
3550 6662 4.323333 GGACCTAGGAGAACTAACCCAAAC 60.323 50.000 17.98 0.00 0.00 2.93
3551 6663 4.237018 ACCTAGGAGAACTAACCCAAACA 58.763 43.478 17.98 0.00 0.00 2.83
3552 6664 4.661709 ACCTAGGAGAACTAACCCAAACAA 59.338 41.667 17.98 0.00 0.00 2.83
3553 6665 5.221864 ACCTAGGAGAACTAACCCAAACAAG 60.222 44.000 17.98 0.00 0.00 3.16
3554 6666 3.487372 AGGAGAACTAACCCAAACAAGC 58.513 45.455 0.00 0.00 0.00 4.01
3555 6667 3.138468 AGGAGAACTAACCCAAACAAGCT 59.862 43.478 0.00 0.00 0.00 3.74
3556 6668 3.889538 GGAGAACTAACCCAAACAAGCTT 59.110 43.478 0.00 0.00 0.00 3.74
3557 6669 4.023107 GGAGAACTAACCCAAACAAGCTTC 60.023 45.833 0.00 0.00 0.00 3.86
3558 6670 4.793201 AGAACTAACCCAAACAAGCTTCT 58.207 39.130 0.00 0.00 0.00 2.85
3559 6671 4.822350 AGAACTAACCCAAACAAGCTTCTC 59.178 41.667 0.00 0.00 0.00 2.87
3560 6672 4.439253 ACTAACCCAAACAAGCTTCTCT 57.561 40.909 0.00 0.00 0.00 3.10
3561 6673 5.562298 ACTAACCCAAACAAGCTTCTCTA 57.438 39.130 0.00 0.00 0.00 2.43
3562 6674 5.552178 ACTAACCCAAACAAGCTTCTCTAG 58.448 41.667 0.00 0.00 0.00 2.43
3563 6675 4.439253 AACCCAAACAAGCTTCTCTAGT 57.561 40.909 0.00 0.00 0.00 2.57
3564 6676 3.744660 ACCCAAACAAGCTTCTCTAGTG 58.255 45.455 0.00 0.00 0.00 2.74
3565 6677 3.136626 ACCCAAACAAGCTTCTCTAGTGT 59.863 43.478 0.00 0.00 0.00 3.55
3566 6678 3.499918 CCCAAACAAGCTTCTCTAGTGTG 59.500 47.826 0.00 0.00 0.00 3.82
3567 6679 3.499918 CCAAACAAGCTTCTCTAGTGTGG 59.500 47.826 8.30 8.30 0.00 4.17
3568 6680 3.409026 AACAAGCTTCTCTAGTGTGGG 57.591 47.619 0.00 0.00 0.00 4.61
3569 6681 1.002544 ACAAGCTTCTCTAGTGTGGGC 59.997 52.381 0.00 0.00 0.00 5.36
3570 6682 1.277557 CAAGCTTCTCTAGTGTGGGCT 59.722 52.381 0.00 0.00 0.00 5.19
3571 6683 2.497675 CAAGCTTCTCTAGTGTGGGCTA 59.502 50.000 0.00 0.00 0.00 3.93
3572 6684 2.383855 AGCTTCTCTAGTGTGGGCTAG 58.616 52.381 0.00 0.00 39.70 3.42
3573 6685 2.104170 GCTTCTCTAGTGTGGGCTAGT 58.896 52.381 0.00 0.00 39.44 2.57
3574 6686 2.498078 GCTTCTCTAGTGTGGGCTAGTT 59.502 50.000 0.00 0.00 39.44 2.24
3575 6687 3.055747 GCTTCTCTAGTGTGGGCTAGTTT 60.056 47.826 0.00 0.00 39.44 2.66
3576 6688 4.563786 GCTTCTCTAGTGTGGGCTAGTTTT 60.564 45.833 0.00 0.00 39.44 2.43
3577 6689 5.552178 CTTCTCTAGTGTGGGCTAGTTTTT 58.448 41.667 0.00 0.00 39.44 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.306141 AGAGAAGCCGACCATGGGA 60.306 57.895 18.09 0.00 0.00 4.37
61 62 1.153289 CCAGAGAAGCCGACCATGG 60.153 63.158 11.19 11.19 0.00 3.66
80 81 1.867919 CGACTCCTGACTGGCGACTT 61.868 60.000 0.00 0.00 35.26 3.01
81 82 2.336478 CGACTCCTGACTGGCGACT 61.336 63.158 0.00 0.00 35.26 4.18
82 83 2.179517 CGACTCCTGACTGGCGAC 59.820 66.667 0.00 0.00 35.26 5.19
83 84 3.062466 CCGACTCCTGACTGGCGA 61.062 66.667 0.00 0.00 35.26 5.54
84 85 4.803426 GCCGACTCCTGACTGGCG 62.803 72.222 0.00 0.00 35.77 5.69
85 86 3.363844 GAGCCGACTCCTGACTGGC 62.364 68.421 0.00 0.00 46.07 4.85
86 87 1.326213 ATGAGCCGACTCCTGACTGG 61.326 60.000 0.00 0.00 42.74 4.00
87 88 0.102120 GATGAGCCGACTCCTGACTG 59.898 60.000 0.00 0.00 42.74 3.51
88 89 1.040339 GGATGAGCCGACTCCTGACT 61.040 60.000 0.00 0.00 42.74 3.41
89 90 1.040339 AGGATGAGCCGACTCCTGAC 61.040 60.000 0.00 0.00 42.74 3.51
90 91 1.307986 AGGATGAGCCGACTCCTGA 59.692 57.895 0.00 0.00 42.74 3.86
91 92 3.947173 AGGATGAGCCGACTCCTG 58.053 61.111 0.00 0.00 42.74 3.86
92 93 1.307986 TCAGGATGAGCCGACTCCT 59.692 57.895 0.00 0.00 42.56 3.69
93 94 3.941081 TCAGGATGAGCCGACTCC 58.059 61.111 0.00 0.00 42.56 3.85
100 101 3.045837 CGAGAACGACTTCAGGATGAGC 61.046 54.545 0.00 0.00 44.66 4.26
101 102 2.478709 CCGAGAACGACTTCAGGATGAG 60.479 54.545 0.00 0.00 44.66 2.90
102 103 1.472878 CCGAGAACGACTTCAGGATGA 59.527 52.381 0.00 0.00 43.00 2.92
103 104 1.469940 CCCGAGAACGACTTCAGGATG 60.470 57.143 0.00 0.00 42.66 3.51
104 105 0.818296 CCCGAGAACGACTTCAGGAT 59.182 55.000 0.00 0.00 42.66 3.24
105 106 1.248785 CCCCGAGAACGACTTCAGGA 61.249 60.000 0.00 0.00 42.66 3.86
106 107 1.215647 CCCCGAGAACGACTTCAGG 59.784 63.158 0.00 0.00 42.66 3.86
107 108 1.446272 GCCCCGAGAACGACTTCAG 60.446 63.158 0.00 0.00 42.66 3.02
108 109 1.874345 GAGCCCCGAGAACGACTTCA 61.874 60.000 0.00 0.00 42.66 3.02
109 110 1.153804 GAGCCCCGAGAACGACTTC 60.154 63.158 0.00 0.00 42.66 3.01
110 111 2.971452 GAGCCCCGAGAACGACTT 59.029 61.111 0.00 0.00 42.66 3.01
111 112 3.441290 CGAGCCCCGAGAACGACT 61.441 66.667 0.00 0.00 42.66 4.18
112 113 4.493747 CCGAGCCCCGAGAACGAC 62.494 72.222 0.00 0.00 42.66 4.34
133 134 3.197790 CAGCCGACTGCCCATTCG 61.198 66.667 1.60 1.60 42.71 3.34
150 151 4.863925 GAGAGTCGGCTGCGAGGC 62.864 72.222 0.00 0.00 37.44 4.70
151 152 3.408501 CTGAGAGTCGGCTGCGAGG 62.409 68.421 0.00 0.00 0.00 4.63
152 153 1.927608 TTCTGAGAGTCGGCTGCGAG 61.928 60.000 0.00 0.00 0.00 5.03
153 154 1.927608 CTTCTGAGAGTCGGCTGCGA 61.928 60.000 0.00 0.00 0.00 5.10
154 155 1.515952 CTTCTGAGAGTCGGCTGCG 60.516 63.158 0.00 0.00 0.00 5.18
155 156 1.153667 CCTTCTGAGAGTCGGCTGC 60.154 63.158 0.00 0.00 0.00 5.25
156 157 1.153667 GCCTTCTGAGAGTCGGCTG 60.154 63.158 0.00 0.00 37.76 4.85
157 158 2.705821 CGCCTTCTGAGAGTCGGCT 61.706 63.158 14.56 0.00 38.58 5.52
158 159 2.202676 CGCCTTCTGAGAGTCGGC 60.203 66.667 8.79 8.79 37.40 5.54
159 160 2.492090 CCGCCTTCTGAGAGTCGG 59.508 66.667 5.10 5.10 0.00 4.79
160 161 2.202676 GCCGCCTTCTGAGAGTCG 60.203 66.667 0.00 0.00 0.00 4.18
161 162 1.140804 GAGCCGCCTTCTGAGAGTC 59.859 63.158 0.00 0.00 0.00 3.36
162 163 0.902516 AAGAGCCGCCTTCTGAGAGT 60.903 55.000 0.00 0.00 0.00 3.24
163 164 0.179113 GAAGAGCCGCCTTCTGAGAG 60.179 60.000 12.00 0.00 39.44 3.20
164 165 1.893786 GAAGAGCCGCCTTCTGAGA 59.106 57.895 12.00 0.00 39.44 3.27
165 166 1.518133 CGAAGAGCCGCCTTCTGAG 60.518 63.158 15.35 2.32 40.17 3.35
166 167 2.214181 GACGAAGAGCCGCCTTCTGA 62.214 60.000 15.35 0.00 40.17 3.27
167 168 1.807573 GACGAAGAGCCGCCTTCTG 60.808 63.158 15.35 12.22 40.17 3.02
168 169 2.574399 GACGAAGAGCCGCCTTCT 59.426 61.111 15.35 0.00 40.17 2.85
169 170 2.509561 GGACGAAGAGCCGCCTTC 60.510 66.667 10.10 10.10 39.23 3.46
170 171 2.997897 AGGACGAAGAGCCGCCTT 60.998 61.111 0.00 0.00 34.23 4.35
171 172 3.764466 CAGGACGAAGAGCCGCCT 61.764 66.667 0.00 0.00 36.83 5.52
172 173 4.821589 CCAGGACGAAGAGCCGCC 62.822 72.222 0.00 0.00 0.00 6.13
173 174 4.821589 CCCAGGACGAAGAGCCGC 62.822 72.222 0.00 0.00 0.00 6.53
174 175 4.148825 CCCCAGGACGAAGAGCCG 62.149 72.222 0.00 0.00 0.00 5.52
175 176 3.003763 ACCCCAGGACGAAGAGCC 61.004 66.667 0.00 0.00 0.00 4.70
176 177 1.545706 AAGACCCCAGGACGAAGAGC 61.546 60.000 0.00 0.00 0.00 4.09
177 178 0.247736 CAAGACCCCAGGACGAAGAG 59.752 60.000 0.00 0.00 0.00 2.85
178 179 0.178944 TCAAGACCCCAGGACGAAGA 60.179 55.000 0.00 0.00 0.00 2.87
179 180 0.247736 CTCAAGACCCCAGGACGAAG 59.752 60.000 0.00 0.00 0.00 3.79
180 181 1.192146 CCTCAAGACCCCAGGACGAA 61.192 60.000 0.00 0.00 0.00 3.85
181 182 1.609501 CCTCAAGACCCCAGGACGA 60.610 63.158 0.00 0.00 0.00 4.20
182 183 2.660064 CCCTCAAGACCCCAGGACG 61.660 68.421 0.00 0.00 0.00 4.79
183 184 2.301738 CCCCTCAAGACCCCAGGAC 61.302 68.421 0.00 0.00 0.00 3.85
184 185 2.124996 CCCCTCAAGACCCCAGGA 59.875 66.667 0.00 0.00 0.00 3.86
185 186 2.204151 ACCCCTCAAGACCCCAGG 60.204 66.667 0.00 0.00 0.00 4.45
186 187 3.081554 CACCCCTCAAGACCCCAG 58.918 66.667 0.00 0.00 0.00 4.45
187 188 3.256960 GCACCCCTCAAGACCCCA 61.257 66.667 0.00 0.00 0.00 4.96
188 189 3.256960 TGCACCCCTCAAGACCCC 61.257 66.667 0.00 0.00 0.00 4.95
189 190 2.224159 TCTGCACCCCTCAAGACCC 61.224 63.158 0.00 0.00 0.00 4.46
190 191 1.003233 GTCTGCACCCCTCAAGACC 60.003 63.158 0.00 0.00 0.00 3.85
191 192 1.066787 GTAGTCTGCACCCCTCAAGAC 60.067 57.143 0.00 0.00 0.00 3.01
192 193 1.267121 GTAGTCTGCACCCCTCAAGA 58.733 55.000 0.00 0.00 0.00 3.02
193 194 0.250513 GGTAGTCTGCACCCCTCAAG 59.749 60.000 0.00 0.00 0.00 3.02
194 195 2.372852 GGTAGTCTGCACCCCTCAA 58.627 57.895 0.00 0.00 0.00 3.02
195 196 4.130255 GGTAGTCTGCACCCCTCA 57.870 61.111 0.00 0.00 0.00 3.86
200 201 1.144057 CATCGGGGTAGTCTGCACC 59.856 63.158 0.00 0.00 35.15 5.01
201 202 0.179108 GACATCGGGGTAGTCTGCAC 60.179 60.000 0.00 0.00 0.00 4.57
202 203 0.324368 AGACATCGGGGTAGTCTGCA 60.324 55.000 0.00 0.00 40.83 4.41
203 204 0.824759 AAGACATCGGGGTAGTCTGC 59.175 55.000 0.00 0.00 41.45 4.26
204 205 2.100197 TCAAGACATCGGGGTAGTCTG 58.900 52.381 0.00 0.00 41.45 3.51
205 206 2.526888 TCAAGACATCGGGGTAGTCT 57.473 50.000 0.00 0.00 43.98 3.24
206 207 3.522553 CTTTCAAGACATCGGGGTAGTC 58.477 50.000 0.00 0.00 0.00 2.59
207 208 2.236395 CCTTTCAAGACATCGGGGTAGT 59.764 50.000 0.00 0.00 0.00 2.73
208 209 2.236395 ACCTTTCAAGACATCGGGGTAG 59.764 50.000 0.00 0.00 0.00 3.18
209 210 2.262637 ACCTTTCAAGACATCGGGGTA 58.737 47.619 0.00 0.00 0.00 3.69
210 211 1.064825 ACCTTTCAAGACATCGGGGT 58.935 50.000 0.00 0.00 0.00 4.95
211 212 2.084546 GAACCTTTCAAGACATCGGGG 58.915 52.381 0.00 0.00 0.00 5.73
212 213 2.744202 CAGAACCTTTCAAGACATCGGG 59.256 50.000 0.00 0.00 0.00 5.14
213 214 2.744202 CCAGAACCTTTCAAGACATCGG 59.256 50.000 0.00 0.00 0.00 4.18
214 215 2.744202 CCCAGAACCTTTCAAGACATCG 59.256 50.000 0.00 0.00 0.00 3.84
215 216 3.753797 GACCCAGAACCTTTCAAGACATC 59.246 47.826 0.00 0.00 0.00 3.06
216 217 3.395941 AGACCCAGAACCTTTCAAGACAT 59.604 43.478 0.00 0.00 0.00 3.06
217 218 2.777692 AGACCCAGAACCTTTCAAGACA 59.222 45.455 0.00 0.00 0.00 3.41
218 219 3.142174 CAGACCCAGAACCTTTCAAGAC 58.858 50.000 0.00 0.00 0.00 3.01
219 220 2.106511 CCAGACCCAGAACCTTTCAAGA 59.893 50.000 0.00 0.00 0.00 3.02
220 221 2.508526 CCAGACCCAGAACCTTTCAAG 58.491 52.381 0.00 0.00 0.00 3.02
221 222 1.144913 CCCAGACCCAGAACCTTTCAA 59.855 52.381 0.00 0.00 0.00 2.69
222 223 0.771127 CCCAGACCCAGAACCTTTCA 59.229 55.000 0.00 0.00 0.00 2.69
223 224 0.771755 ACCCAGACCCAGAACCTTTC 59.228 55.000 0.00 0.00 0.00 2.62
224 225 1.145119 GAACCCAGACCCAGAACCTTT 59.855 52.381 0.00 0.00 0.00 3.11
225 226 0.771755 GAACCCAGACCCAGAACCTT 59.228 55.000 0.00 0.00 0.00 3.50
226 227 1.481056 CGAACCCAGACCCAGAACCT 61.481 60.000 0.00 0.00 0.00 3.50
227 228 1.003718 CGAACCCAGACCCAGAACC 60.004 63.158 0.00 0.00 0.00 3.62
228 229 1.671379 GCGAACCCAGACCCAGAAC 60.671 63.158 0.00 0.00 0.00 3.01
229 230 2.747686 GCGAACCCAGACCCAGAA 59.252 61.111 0.00 0.00 0.00 3.02
230 231 2.449967 TAGGCGAACCCAGACCCAGA 62.450 60.000 0.00 0.00 36.11 3.86
231 232 1.987855 TAGGCGAACCCAGACCCAG 60.988 63.158 0.00 0.00 36.11 4.45
232 233 2.120940 TAGGCGAACCCAGACCCA 59.879 61.111 0.00 0.00 36.11 4.51
233 234 2.582978 GTAGGCGAACCCAGACCC 59.417 66.667 0.00 0.00 36.11 4.46
234 235 2.582978 GGTAGGCGAACCCAGACC 59.417 66.667 0.98 0.00 35.46 3.85
240 241 2.125793 GTCACGGGTAGGCGAACC 60.126 66.667 3.70 3.70 38.94 3.62
241 242 2.125793 GGTCACGGGTAGGCGAAC 60.126 66.667 0.00 0.00 0.00 3.95
242 243 3.384532 GGGTCACGGGTAGGCGAA 61.385 66.667 0.00 0.00 0.00 4.70
243 244 3.968837 ATGGGTCACGGGTAGGCGA 62.969 63.158 0.00 0.00 0.00 5.54
244 245 1.678598 TAATGGGTCACGGGTAGGCG 61.679 60.000 0.00 0.00 0.00 5.52
245 246 0.179065 GTAATGGGTCACGGGTAGGC 60.179 60.000 0.00 0.00 0.00 3.93
246 247 1.411612 GAGTAATGGGTCACGGGTAGG 59.588 57.143 0.00 0.00 0.00 3.18
247 248 1.411612 GGAGTAATGGGTCACGGGTAG 59.588 57.143 0.00 0.00 0.00 3.18
248 249 1.488390 GGAGTAATGGGTCACGGGTA 58.512 55.000 0.00 0.00 0.00 3.69
249 250 1.610554 CGGAGTAATGGGTCACGGGT 61.611 60.000 0.00 0.00 0.00 5.28
250 251 1.143183 CGGAGTAATGGGTCACGGG 59.857 63.158 0.00 0.00 0.00 5.28
251 252 0.179119 GTCGGAGTAATGGGTCACGG 60.179 60.000 0.00 0.00 0.00 4.94
252 253 0.528924 TGTCGGAGTAATGGGTCACG 59.471 55.000 0.00 0.00 0.00 4.35
253 254 2.289195 TGTTGTCGGAGTAATGGGTCAC 60.289 50.000 0.00 0.00 0.00 3.67
254 255 1.972075 TGTTGTCGGAGTAATGGGTCA 59.028 47.619 0.00 0.00 0.00 4.02
255 256 2.754946 TGTTGTCGGAGTAATGGGTC 57.245 50.000 0.00 0.00 0.00 4.46
256 257 3.263425 AGATTGTTGTCGGAGTAATGGGT 59.737 43.478 0.00 0.00 0.00 4.51
257 258 3.871594 GAGATTGTTGTCGGAGTAATGGG 59.128 47.826 0.00 0.00 0.00 4.00
258 259 4.759782 AGAGATTGTTGTCGGAGTAATGG 58.240 43.478 0.00 0.00 0.00 3.16
259 260 6.102663 AGAAGAGATTGTTGTCGGAGTAATG 58.897 40.000 0.00 0.00 0.00 1.90
260 261 6.153680 AGAGAAGAGATTGTTGTCGGAGTAAT 59.846 38.462 0.00 0.00 0.00 1.89
261 262 5.477291 AGAGAAGAGATTGTTGTCGGAGTAA 59.523 40.000 0.00 0.00 0.00 2.24
262 263 5.010933 AGAGAAGAGATTGTTGTCGGAGTA 58.989 41.667 0.00 0.00 0.00 2.59
263 264 3.829601 AGAGAAGAGATTGTTGTCGGAGT 59.170 43.478 0.00 0.00 0.00 3.85
264 265 4.082517 TGAGAGAAGAGATTGTTGTCGGAG 60.083 45.833 0.00 0.00 0.00 4.63
265 266 3.826729 TGAGAGAAGAGATTGTTGTCGGA 59.173 43.478 0.00 0.00 0.00 4.55
266 267 3.923461 GTGAGAGAAGAGATTGTTGTCGG 59.077 47.826 0.00 0.00 0.00 4.79
267 268 3.605916 CGTGAGAGAAGAGATTGTTGTCG 59.394 47.826 0.00 0.00 0.00 4.35
268 269 4.799678 TCGTGAGAGAAGAGATTGTTGTC 58.200 43.478 0.00 0.00 34.84 3.18
269 270 4.855715 TCGTGAGAGAAGAGATTGTTGT 57.144 40.909 0.00 0.00 34.84 3.32
335 336 1.400494 CAATAGCTAGGCGGCGTTTTT 59.600 47.619 9.37 0.00 37.29 1.94
375 376 8.512138 GCTTTAGTACACCTTGTTGTATTTGAT 58.488 33.333 0.00 0.00 34.50 2.57
378 379 7.040686 CCTGCTTTAGTACACCTTGTTGTATTT 60.041 37.037 0.00 0.00 34.50 1.40
404 405 6.040616 TCTCTCCGATCTACCTTAAATTGTCC 59.959 42.308 0.00 0.00 0.00 4.02
415 416 6.594937 ACGATTTATACTCTCTCCGATCTACC 59.405 42.308 0.00 0.00 0.00 3.18
472 473 4.832248 CTGGAGCTGATTGGTTGTACTAA 58.168 43.478 0.00 0.00 0.00 2.24
579 596 1.441725 CGTCGTGTTAAGCAAAAACGC 59.558 47.619 9.08 4.90 34.38 4.84
587 604 5.069485 TGTAAAAAGTCGTCGTGTTAAGC 57.931 39.130 0.00 0.00 0.00 3.09
644 661 1.893808 CACTCCAGTGTGCCACCAC 60.894 63.158 0.00 0.00 40.96 4.16
823 1157 6.337356 TGCCCTTATTTCATTCCGAATTTTC 58.663 36.000 0.00 0.00 32.32 2.29
824 1158 6.293004 TGCCCTTATTTCATTCCGAATTTT 57.707 33.333 0.00 0.00 32.32 1.82
825 1159 5.930837 TGCCCTTATTTCATTCCGAATTT 57.069 34.783 0.00 0.00 32.32 1.82
826 1160 5.186797 TGTTGCCCTTATTTCATTCCGAATT 59.813 36.000 0.00 0.00 32.32 2.17
828 1162 4.082463 GTGTTGCCCTTATTTCATTCCGAA 60.082 41.667 0.00 0.00 0.00 4.30
829 1163 3.442273 GTGTTGCCCTTATTTCATTCCGA 59.558 43.478 0.00 0.00 0.00 4.55
830 1164 3.730662 CGTGTTGCCCTTATTTCATTCCG 60.731 47.826 0.00 0.00 0.00 4.30
832 1166 4.156008 ACTCGTGTTGCCCTTATTTCATTC 59.844 41.667 0.00 0.00 0.00 2.67
872 1223 4.151867 CGTCTCTGTTTAGGGCTGTTTAAC 59.848 45.833 0.00 0.00 0.00 2.01
943 1298 1.569493 CGCAGTTTCGTGGAAGGTG 59.431 57.895 0.00 0.00 0.00 4.00
995 1350 2.239907 GGTGCTCTAGGGTTCATTTCCT 59.760 50.000 0.00 0.00 37.18 3.36
1016 1371 2.551032 TCCACGCCTCGTATATGTACTG 59.449 50.000 0.00 0.00 38.32 2.74
1635 2022 4.849329 GGCACGTACCGCTCGAGG 62.849 72.222 15.58 1.09 37.30 4.63
2632 4137 6.903883 TCATCTACTCCTCAAATAAAACGC 57.096 37.500 0.00 0.00 0.00 4.84
2765 4270 5.344665 CAGCGAGTACAAGAAGAAGAAGAAG 59.655 44.000 0.00 0.00 0.00 2.85
2777 4282 6.408858 ACATAACAAATCAGCGAGTACAAG 57.591 37.500 0.00 0.00 0.00 3.16
2779 4284 7.892778 TTAACATAACAAATCAGCGAGTACA 57.107 32.000 0.00 0.00 0.00 2.90
2802 4307 2.665165 TGGTGACTGACTTGCCATTTT 58.335 42.857 0.00 0.00 0.00 1.82
2816 4321 1.202698 ACTGGTGAAGCTCTTGGTGAC 60.203 52.381 0.00 0.00 0.00 3.67
2819 4324 1.131638 TGACTGGTGAAGCTCTTGGT 58.868 50.000 0.00 0.00 0.00 3.67
2869 5764 4.806640 AGGGCCAATTATTGTTCAAGTG 57.193 40.909 6.18 0.00 0.00 3.16
2874 5769 4.450082 AACGAAGGGCCAATTATTGTTC 57.550 40.909 6.18 0.00 0.00 3.18
2975 6082 1.816224 ACGTGTGCAAGGTTTTCAGTT 59.184 42.857 0.00 0.00 0.00 3.16
2986 6093 1.286501 GACTTGACTGACGTGTGCAA 58.713 50.000 0.00 0.00 0.00 4.08
2995 6102 2.034685 CGACTCTTGGTGACTTGACTGA 59.965 50.000 0.00 0.00 0.00 3.41
2998 6105 2.128035 CACGACTCTTGGTGACTTGAC 58.872 52.381 0.00 0.00 36.25 3.18
2999 6106 1.754803 ACACGACTCTTGGTGACTTGA 59.245 47.619 0.00 0.00 37.58 3.02
3005 6112 3.978687 ACTCTAAACACGACTCTTGGTG 58.021 45.455 0.00 0.00 39.98 4.17
3018 6125 5.758296 TCCACAGATGTTGTTGACTCTAAAC 59.242 40.000 0.00 0.00 38.16 2.01
3022 6129 3.733337 GTCCACAGATGTTGTTGACTCT 58.267 45.455 4.76 0.00 44.76 3.24
3044 6151 0.810031 ATCCCGCGTCACATAAGTGC 60.810 55.000 4.92 0.00 45.49 4.40
3053 6160 0.816421 TGATCTACGATCCCGCGTCA 60.816 55.000 4.92 0.00 44.39 4.35
3096 6203 6.096001 AGTGAGTTCCCAATATGAGATTTTGC 59.904 38.462 0.00 0.00 0.00 3.68
3112 6219 2.732597 CGGAAGATCGACAGTGAGTTCC 60.733 54.545 0.00 0.00 34.10 3.62
3139 6246 4.547406 AAAAAGGAAGTACACTTGCGAC 57.453 40.909 7.81 0.00 46.96 5.19
3155 6262 9.188588 CAGATGGCTATGCACATATTTAAAAAG 57.811 33.333 0.00 0.00 0.00 2.27
3158 6265 6.294675 GGCAGATGGCTATGCACATATTTAAA 60.295 38.462 10.44 0.00 44.37 1.52
3171 6278 0.862554 ATTTGGGGGCAGATGGCTAT 59.137 50.000 6.34 0.00 44.01 2.97
3178 6285 3.117663 GTGGTCTATTATTTGGGGGCAGA 60.118 47.826 0.00 0.00 0.00 4.26
3190 6297 4.188462 CAATGTTGGCTCGTGGTCTATTA 58.812 43.478 0.00 0.00 0.00 0.98
3195 6302 1.210155 GCAATGTTGGCTCGTGGTC 59.790 57.895 0.00 0.00 0.00 4.02
3214 6321 2.752354 TGGCGACAAACTATTCCAATGG 59.248 45.455 0.00 0.00 37.44 3.16
3221 6332 3.522553 GAGCTAGTGGCGACAAACTATT 58.477 45.455 0.00 0.00 46.06 1.73
3268 6380 2.666190 CTGAGGTGGTGTGTGGCG 60.666 66.667 0.00 0.00 0.00 5.69
3284 6396 1.019278 CATAACGGCGTGGAGTTGCT 61.019 55.000 15.70 0.00 0.00 3.91
3295 6407 0.811616 CAGAGGTCCTGCATAACGGC 60.812 60.000 0.00 0.00 35.89 5.68
3330 6442 6.042208 ACTGAGTTAGAGTATCCAAATAGGGC 59.958 42.308 0.00 0.00 38.24 5.19
3331 6443 7.604657 ACTGAGTTAGAGTATCCAAATAGGG 57.395 40.000 0.00 0.00 38.24 3.53
3378 6490 9.585369 AGTGTTAGTCTAGAGTTAGTTTAAGGT 57.415 33.333 5.16 0.00 0.00 3.50
3383 6495 9.359653 TGGTTAGTGTTAGTCTAGAGTTAGTTT 57.640 33.333 5.16 0.00 0.00 2.66
3384 6496 8.930846 TGGTTAGTGTTAGTCTAGAGTTAGTT 57.069 34.615 5.16 0.00 0.00 2.24
3385 6497 8.930846 TTGGTTAGTGTTAGTCTAGAGTTAGT 57.069 34.615 5.16 0.00 0.00 2.24
3386 6498 9.843334 CTTTGGTTAGTGTTAGTCTAGAGTTAG 57.157 37.037 5.16 0.00 0.00 2.34
3387 6499 9.578576 TCTTTGGTTAGTGTTAGTCTAGAGTTA 57.421 33.333 5.16 0.00 0.00 2.24
3388 6500 8.474710 TCTTTGGTTAGTGTTAGTCTAGAGTT 57.525 34.615 5.16 0.00 0.00 3.01
3389 6501 7.309316 GCTCTTTGGTTAGTGTTAGTCTAGAGT 60.309 40.741 5.21 5.21 0.00 3.24
3390 6502 7.030768 GCTCTTTGGTTAGTGTTAGTCTAGAG 58.969 42.308 0.00 0.00 0.00 2.43
3391 6503 6.720288 AGCTCTTTGGTTAGTGTTAGTCTAGA 59.280 38.462 0.00 0.00 0.00 2.43
3392 6504 6.809196 CAGCTCTTTGGTTAGTGTTAGTCTAG 59.191 42.308 0.00 0.00 0.00 2.43
3393 6505 6.267014 ACAGCTCTTTGGTTAGTGTTAGTCTA 59.733 38.462 0.00 0.00 0.00 2.59
3394 6506 5.070580 ACAGCTCTTTGGTTAGTGTTAGTCT 59.929 40.000 0.00 0.00 0.00 3.24
3395 6507 5.298347 ACAGCTCTTTGGTTAGTGTTAGTC 58.702 41.667 0.00 0.00 0.00 2.59
3396 6508 5.291905 ACAGCTCTTTGGTTAGTGTTAGT 57.708 39.130 0.00 0.00 0.00 2.24
3397 6509 6.430451 CAAACAGCTCTTTGGTTAGTGTTAG 58.570 40.000 6.56 0.00 0.00 2.34
3398 6510 5.298276 CCAAACAGCTCTTTGGTTAGTGTTA 59.702 40.000 21.68 0.00 43.67 2.41
3399 6511 4.097892 CCAAACAGCTCTTTGGTTAGTGTT 59.902 41.667 21.68 0.00 43.67 3.32
3400 6512 3.632145 CCAAACAGCTCTTTGGTTAGTGT 59.368 43.478 21.68 0.00 43.67 3.55
3401 6513 4.228912 CCAAACAGCTCTTTGGTTAGTG 57.771 45.455 21.68 2.74 43.67 2.74
3408 6520 3.441572 CCTACCATCCAAACAGCTCTTTG 59.558 47.826 7.43 7.43 0.00 2.77
3409 6521 3.562176 CCCTACCATCCAAACAGCTCTTT 60.562 47.826 0.00 0.00 0.00 2.52
3410 6522 2.025887 CCCTACCATCCAAACAGCTCTT 60.026 50.000 0.00 0.00 0.00 2.85
3411 6523 1.561542 CCCTACCATCCAAACAGCTCT 59.438 52.381 0.00 0.00 0.00 4.09
3412 6524 1.282157 ACCCTACCATCCAAACAGCTC 59.718 52.381 0.00 0.00 0.00 4.09
3413 6525 1.372501 ACCCTACCATCCAAACAGCT 58.627 50.000 0.00 0.00 0.00 4.24
3414 6526 2.215942 AACCCTACCATCCAAACAGC 57.784 50.000 0.00 0.00 0.00 4.40
3415 6527 4.837093 TCTAACCCTACCATCCAAACAG 57.163 45.455 0.00 0.00 0.00 3.16
3416 6528 5.251932 TCAATCTAACCCTACCATCCAAACA 59.748 40.000 0.00 0.00 0.00 2.83
3417 6529 5.589050 GTCAATCTAACCCTACCATCCAAAC 59.411 44.000 0.00 0.00 0.00 2.93
3418 6530 5.251932 TGTCAATCTAACCCTACCATCCAAA 59.748 40.000 0.00 0.00 0.00 3.28
3419 6531 4.785914 TGTCAATCTAACCCTACCATCCAA 59.214 41.667 0.00 0.00 0.00 3.53
3420 6532 4.367166 TGTCAATCTAACCCTACCATCCA 58.633 43.478 0.00 0.00 0.00 3.41
3421 6533 5.367945 TTGTCAATCTAACCCTACCATCC 57.632 43.478 0.00 0.00 0.00 3.51
3422 6534 8.974060 TTTATTGTCAATCTAACCCTACCATC 57.026 34.615 0.07 0.00 0.00 3.51
3453 6565 9.748708 CCAAAGTAGTCAAATGATTGAGAAAAA 57.251 29.630 0.00 0.00 45.88 1.94
3454 6566 9.130661 TCCAAAGTAGTCAAATGATTGAGAAAA 57.869 29.630 0.00 0.00 45.88 2.29
3455 6567 8.567948 GTCCAAAGTAGTCAAATGATTGAGAAA 58.432 33.333 0.00 0.00 45.88 2.52
3456 6568 7.174946 GGTCCAAAGTAGTCAAATGATTGAGAA 59.825 37.037 0.00 0.00 45.88 2.87
3457 6569 6.655003 GGTCCAAAGTAGTCAAATGATTGAGA 59.345 38.462 0.00 0.00 45.88 3.27
3458 6570 6.430925 TGGTCCAAAGTAGTCAAATGATTGAG 59.569 38.462 0.00 0.00 45.88 3.02
3459 6571 6.303054 TGGTCCAAAGTAGTCAAATGATTGA 58.697 36.000 0.00 0.00 43.18 2.57
3460 6572 6.573664 TGGTCCAAAGTAGTCAAATGATTG 57.426 37.500 0.00 0.00 37.92 2.67
3461 6573 6.721208 ACATGGTCCAAAGTAGTCAAATGATT 59.279 34.615 0.00 0.00 0.00 2.57
3462 6574 6.248433 ACATGGTCCAAAGTAGTCAAATGAT 58.752 36.000 0.00 0.00 0.00 2.45
3463 6575 5.630121 ACATGGTCCAAAGTAGTCAAATGA 58.370 37.500 0.00 0.00 0.00 2.57
3464 6576 5.964958 ACATGGTCCAAAGTAGTCAAATG 57.035 39.130 0.00 0.00 0.00 2.32
3465 6577 6.976934 AAACATGGTCCAAAGTAGTCAAAT 57.023 33.333 0.00 0.00 0.00 2.32
3466 6578 7.883391 TTAAACATGGTCCAAAGTAGTCAAA 57.117 32.000 0.00 0.00 0.00 2.69
3467 6579 7.883391 TTTAAACATGGTCCAAAGTAGTCAA 57.117 32.000 0.00 0.00 0.00 3.18
3468 6580 7.721842 TCATTTAAACATGGTCCAAAGTAGTCA 59.278 33.333 0.00 0.00 0.00 3.41
3469 6581 8.106247 TCATTTAAACATGGTCCAAAGTAGTC 57.894 34.615 0.00 0.00 0.00 2.59
3470 6582 7.942341 TCTCATTTAAACATGGTCCAAAGTAGT 59.058 33.333 0.00 0.00 0.00 2.73
3471 6583 8.335532 TCTCATTTAAACATGGTCCAAAGTAG 57.664 34.615 0.00 0.00 0.00 2.57
3472 6584 7.393234 CCTCTCATTTAAACATGGTCCAAAGTA 59.607 37.037 0.00 0.00 0.00 2.24
3473 6585 6.209391 CCTCTCATTTAAACATGGTCCAAAGT 59.791 38.462 0.00 0.00 0.00 2.66
3474 6586 6.350445 CCCTCTCATTTAAACATGGTCCAAAG 60.350 42.308 0.00 0.00 0.00 2.77
3475 6587 5.480073 CCCTCTCATTTAAACATGGTCCAAA 59.520 40.000 0.00 0.00 0.00 3.28
3476 6588 5.016173 CCCTCTCATTTAAACATGGTCCAA 58.984 41.667 0.00 0.00 0.00 3.53
3477 6589 4.290985 TCCCTCTCATTTAAACATGGTCCA 59.709 41.667 0.00 0.00 0.00 4.02
3478 6590 4.855340 TCCCTCTCATTTAAACATGGTCC 58.145 43.478 0.00 0.00 0.00 4.46
3479 6591 7.775561 AGTTATCCCTCTCATTTAAACATGGTC 59.224 37.037 0.00 0.00 0.00 4.02
3480 6592 7.643123 AGTTATCCCTCTCATTTAAACATGGT 58.357 34.615 0.00 0.00 0.00 3.55
3481 6593 8.525290 AAGTTATCCCTCTCATTTAAACATGG 57.475 34.615 0.00 0.00 0.00 3.66
3523 6635 4.325658 GGGTTAGTTCTCCTAGGTCCACTA 60.326 50.000 9.08 10.14 0.00 2.74
3524 6636 3.566111 GGGTTAGTTCTCCTAGGTCCACT 60.566 52.174 9.08 11.10 0.00 4.00
3525 6637 2.765135 GGGTTAGTTCTCCTAGGTCCAC 59.235 54.545 9.08 3.85 0.00 4.02
3526 6638 2.384375 TGGGTTAGTTCTCCTAGGTCCA 59.616 50.000 9.08 1.78 0.00 4.02
3527 6639 3.111741 TGGGTTAGTTCTCCTAGGTCC 57.888 52.381 9.08 0.00 0.00 4.46
3528 6640 4.285260 TGTTTGGGTTAGTTCTCCTAGGTC 59.715 45.833 9.08 0.00 0.00 3.85
3529 6641 4.237018 TGTTTGGGTTAGTTCTCCTAGGT 58.763 43.478 9.08 0.00 0.00 3.08
3530 6642 4.903045 TGTTTGGGTTAGTTCTCCTAGG 57.097 45.455 0.82 0.82 0.00 3.02
3531 6643 4.695928 GCTTGTTTGGGTTAGTTCTCCTAG 59.304 45.833 0.00 0.00 0.00 3.02
3532 6644 4.349930 AGCTTGTTTGGGTTAGTTCTCCTA 59.650 41.667 0.00 0.00 0.00 2.94
3533 6645 3.138468 AGCTTGTTTGGGTTAGTTCTCCT 59.862 43.478 0.00 0.00 0.00 3.69
3534 6646 3.487372 AGCTTGTTTGGGTTAGTTCTCC 58.513 45.455 0.00 0.00 0.00 3.71
3535 6647 4.822350 AGAAGCTTGTTTGGGTTAGTTCTC 59.178 41.667 2.10 0.00 0.00 2.87
3536 6648 4.793201 AGAAGCTTGTTTGGGTTAGTTCT 58.207 39.130 2.10 0.00 0.00 3.01
3537 6649 4.822350 AGAGAAGCTTGTTTGGGTTAGTTC 59.178 41.667 2.10 0.00 0.00 3.01
3538 6650 4.793201 AGAGAAGCTTGTTTGGGTTAGTT 58.207 39.130 2.10 0.00 0.00 2.24
3539 6651 4.439253 AGAGAAGCTTGTTTGGGTTAGT 57.561 40.909 2.10 0.00 0.00 2.24
3540 6652 5.409826 CACTAGAGAAGCTTGTTTGGGTTAG 59.590 44.000 2.10 0.00 29.93 2.34
3541 6653 5.163237 ACACTAGAGAAGCTTGTTTGGGTTA 60.163 40.000 2.10 0.00 29.93 2.85
3542 6654 4.137543 CACTAGAGAAGCTTGTTTGGGTT 58.862 43.478 2.10 0.00 29.93 4.11
3543 6655 3.136626 ACACTAGAGAAGCTTGTTTGGGT 59.863 43.478 2.10 0.00 29.93 4.51
3544 6656 3.499918 CACACTAGAGAAGCTTGTTTGGG 59.500 47.826 2.10 0.00 29.96 4.12
3545 6657 3.499918 CCACACTAGAGAAGCTTGTTTGG 59.500 47.826 2.10 4.06 41.44 3.28
3546 6658 3.499918 CCCACACTAGAGAAGCTTGTTTG 59.500 47.826 2.10 0.00 32.28 2.93
3547 6659 3.744660 CCCACACTAGAGAAGCTTGTTT 58.255 45.455 2.10 0.00 29.93 2.83
3548 6660 2.551071 GCCCACACTAGAGAAGCTTGTT 60.551 50.000 2.10 0.00 29.93 2.83
3549 6661 1.002544 GCCCACACTAGAGAAGCTTGT 59.997 52.381 2.10 0.00 32.68 3.16
3550 6662 1.277557 AGCCCACACTAGAGAAGCTTG 59.722 52.381 2.10 0.00 0.00 4.01
3551 6663 1.650528 AGCCCACACTAGAGAAGCTT 58.349 50.000 0.00 0.00 0.00 3.74
3552 6664 2.291930 ACTAGCCCACACTAGAGAAGCT 60.292 50.000 0.00 2.82 41.92 3.74
3553 6665 2.104170 ACTAGCCCACACTAGAGAAGC 58.896 52.381 0.00 0.00 41.92 3.86
3554 6666 4.810191 AAACTAGCCCACACTAGAGAAG 57.190 45.455 0.00 0.00 41.92 2.85
3555 6667 5.562298 AAAAACTAGCCCACACTAGAGAA 57.438 39.130 0.00 0.00 41.92 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.