Multiple sequence alignment - TraesCS2A01G221000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G221000 chr2A 100.000 2992 0 0 1 2992 209397305 209394314 0.000000e+00 5526
1 TraesCS2A01G221000 chr2B 94.761 2138 76 14 881 2992 250744472 250742345 0.000000e+00 3295
2 TraesCS2A01G221000 chr2B 88.108 370 28 8 101 460 250771266 250770903 2.760000e-115 425
3 TraesCS2A01G221000 chr2B 93.069 101 5 2 1 100 396603190 396603289 2.400000e-31 147
4 TraesCS2A01G221000 chr2D 93.194 2204 84 23 815 2992 194764123 194761960 0.000000e+00 3179
5 TraesCS2A01G221000 chr2D 92.440 291 20 2 460 749 460101120 460101409 5.970000e-112 414
6 TraesCS2A01G221000 chr2D 87.887 355 24 9 115 460 194764515 194764171 1.670000e-107 399
7 TraesCS2A01G221000 chr2D 93.137 102 4 3 1 100 264289377 264289277 2.400000e-31 147
8 TraesCS2A01G221000 chr2D 92.079 101 5 3 1 100 327338800 327338898 4.020000e-29 139
9 TraesCS2A01G221000 chr2D 92.000 100 5 3 1 99 596892046 596892143 1.450000e-28 137
10 TraesCS2A01G221000 chr6A 95.105 286 14 0 460 745 554830682 554830397 4.550000e-123 451
11 TraesCS2A01G221000 chr1B 92.466 292 20 2 456 745 145291409 145291118 1.660000e-112 416
12 TraesCS2A01G221000 chr1B 92.000 100 7 1 1 99 100240379 100240280 4.020000e-29 139
13 TraesCS2A01G221000 chr7D 92.440 291 20 2 460 749 379374700 379374411 5.970000e-112 414
14 TraesCS2A01G221000 chr7D 92.079 101 5 3 1 99 262351669 262351768 4.020000e-29 139
15 TraesCS2A01G221000 chr6D 92.440 291 20 2 460 749 45338952 45338663 5.970000e-112 414
16 TraesCS2A01G221000 chr4D 92.440 291 20 2 460 749 313255218 313254929 5.970000e-112 414
17 TraesCS2A01G221000 chr4D 92.683 287 20 1 460 745 332060266 332059980 2.150000e-111 412
18 TraesCS2A01G221000 chr4D 92.096 291 21 2 460 749 39722145 39722434 2.780000e-110 409
19 TraesCS2A01G221000 chr4D 92.096 291 21 2 460 749 68843477 68843766 2.780000e-110 409
20 TraesCS2A01G221000 chr1D 92.096 291 21 2 460 749 56922266 56921977 2.780000e-110 409
21 TraesCS2A01G221000 chr1D 92.096 291 21 2 460 749 173622344 173622633 2.780000e-110 409
22 TraesCS2A01G221000 chr1D 92.096 291 21 2 460 749 426043161 426042872 2.780000e-110 409
23 TraesCS2A01G221000 chr4B 92.308 104 3 2 1 100 303032932 303032830 3.110000e-30 143
24 TraesCS2A01G221000 chr3D 91.262 103 6 3 1 102 264392073 264391973 1.450000e-28 137
25 TraesCS2A01G221000 chr3B 91.000 100 6 3 1 99 390247099 390247002 6.730000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G221000 chr2A 209394314 209397305 2991 True 5526 5526 100.0000 1 2992 1 chr2A.!!$R1 2991
1 TraesCS2A01G221000 chr2B 250742345 250744472 2127 True 3295 3295 94.7610 881 2992 1 chr2B.!!$R1 2111
2 TraesCS2A01G221000 chr2D 194761960 194764515 2555 True 1789 3179 90.5405 115 2992 2 chr2D.!!$R2 2877

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 475 0.03467 AAGCCCCATTCTGTCAGAGC 60.035 55.0 2.12 2.86 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 2270 0.040958 GTTCTCAGCAAACGTGGCAG 60.041 55.0 14.05 6.85 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.628500 AAACTCAACCTTAACTTGAAGAATACT 57.372 29.630 0.00 0.00 0.00 2.12
55 56 8.812513 AACTACAACTTTTACTTGTTAAGGGT 57.187 30.769 0.00 0.00 33.79 4.34
56 57 8.442632 ACTACAACTTTTACTTGTTAAGGGTC 57.557 34.615 0.00 0.00 33.79 4.46
57 58 8.270030 ACTACAACTTTTACTTGTTAAGGGTCT 58.730 33.333 0.00 0.00 33.79 3.85
58 59 9.768662 CTACAACTTTTACTTGTTAAGGGTCTA 57.231 33.333 0.00 0.00 33.79 2.59
60 61 9.636789 ACAACTTTTACTTGTTAAGGGTCTAAT 57.363 29.630 0.00 0.00 0.00 1.73
62 63 9.856162 AACTTTTACTTGTTAAGGGTCTAATCA 57.144 29.630 0.00 0.00 0.00 2.57
63 64 9.281371 ACTTTTACTTGTTAAGGGTCTAATCAC 57.719 33.333 0.00 0.00 0.00 3.06
64 65 8.625786 TTTTACTTGTTAAGGGTCTAATCACC 57.374 34.615 0.00 0.00 35.42 4.02
81 82 2.615773 CCCCCTCCCTCTAGACCC 59.384 72.222 0.00 0.00 0.00 4.46
82 83 2.615773 CCCCTCCCTCTAGACCCC 59.384 72.222 0.00 0.00 0.00 4.95
83 84 2.021652 CCCCTCCCTCTAGACCCCT 61.022 68.421 0.00 0.00 0.00 4.79
84 85 1.544703 CCCTCCCTCTAGACCCCTC 59.455 68.421 0.00 0.00 0.00 4.30
85 86 1.002242 CCCTCCCTCTAGACCCCTCT 61.002 65.000 0.00 0.00 0.00 3.69
86 87 0.938192 CCTCCCTCTAGACCCCTCTT 59.062 60.000 0.00 0.00 0.00 2.85
87 88 1.133294 CCTCCCTCTAGACCCCTCTTC 60.133 61.905 0.00 0.00 0.00 2.87
88 89 0.935194 TCCCTCTAGACCCCTCTTCC 59.065 60.000 0.00 0.00 0.00 3.46
89 90 0.105401 CCCTCTAGACCCCTCTTCCC 60.105 65.000 0.00 0.00 0.00 3.97
90 91 0.468400 CCTCTAGACCCCTCTTCCCG 60.468 65.000 0.00 0.00 0.00 5.14
91 92 0.551879 CTCTAGACCCCTCTTCCCGA 59.448 60.000 0.00 0.00 0.00 5.14
92 93 1.146152 CTCTAGACCCCTCTTCCCGAT 59.854 57.143 0.00 0.00 0.00 4.18
93 94 1.145325 TCTAGACCCCTCTTCCCGATC 59.855 57.143 0.00 0.00 0.00 3.69
94 95 1.146152 CTAGACCCCTCTTCCCGATCT 59.854 57.143 0.00 0.00 0.00 2.75
95 96 0.340208 AGACCCCTCTTCCCGATCTT 59.660 55.000 0.00 0.00 0.00 2.40
96 97 1.205055 GACCCCTCTTCCCGATCTTT 58.795 55.000 0.00 0.00 0.00 2.52
97 98 1.139256 GACCCCTCTTCCCGATCTTTC 59.861 57.143 0.00 0.00 0.00 2.62
98 99 1.204146 CCCCTCTTCCCGATCTTTCA 58.796 55.000 0.00 0.00 0.00 2.69
99 100 1.139853 CCCCTCTTCCCGATCTTTCAG 59.860 57.143 0.00 0.00 0.00 3.02
100 101 2.111384 CCCTCTTCCCGATCTTTCAGA 58.889 52.381 0.00 0.00 0.00 3.27
101 102 2.501723 CCCTCTTCCCGATCTTTCAGAA 59.498 50.000 0.00 0.00 0.00 3.02
102 103 3.055094 CCCTCTTCCCGATCTTTCAGAAA 60.055 47.826 0.00 0.00 0.00 2.52
103 104 4.565652 CCCTCTTCCCGATCTTTCAGAAAA 60.566 45.833 0.00 0.00 0.00 2.29
104 105 5.003804 CCTCTTCCCGATCTTTCAGAAAAA 58.996 41.667 0.00 0.00 0.00 1.94
105 106 5.106515 CCTCTTCCCGATCTTTCAGAAAAAC 60.107 44.000 0.00 0.00 0.00 2.43
106 107 5.373222 TCTTCCCGATCTTTCAGAAAAACA 58.627 37.500 0.00 0.00 0.00 2.83
107 108 6.003950 TCTTCCCGATCTTTCAGAAAAACAT 58.996 36.000 0.00 0.00 0.00 2.71
108 109 7.165485 TCTTCCCGATCTTTCAGAAAAACATA 58.835 34.615 0.00 0.00 0.00 2.29
109 110 7.663905 TCTTCCCGATCTTTCAGAAAAACATAA 59.336 33.333 0.00 0.00 0.00 1.90
110 111 7.377766 TCCCGATCTTTCAGAAAAACATAAG 57.622 36.000 0.00 0.00 0.00 1.73
111 112 7.165485 TCCCGATCTTTCAGAAAAACATAAGA 58.835 34.615 0.00 0.00 0.00 2.10
112 113 7.829211 TCCCGATCTTTCAGAAAAACATAAGAT 59.171 33.333 0.00 0.00 35.64 2.40
113 114 8.462016 CCCGATCTTTCAGAAAAACATAAGATT 58.538 33.333 0.00 0.00 33.74 2.40
201 202 7.591057 CGAAATCTAGTGCAAATGAAACTCAAA 59.409 33.333 0.00 0.00 0.00 2.69
218 219 7.530426 AACTCAAAGAAAAATGCCTATGACT 57.470 32.000 0.00 0.00 0.00 3.41
219 220 7.530426 ACTCAAAGAAAAATGCCTATGACTT 57.470 32.000 0.00 0.00 0.00 3.01
220 221 8.635765 ACTCAAAGAAAAATGCCTATGACTTA 57.364 30.769 0.00 0.00 0.00 2.24
221 222 8.515414 ACTCAAAGAAAAATGCCTATGACTTAC 58.485 33.333 0.00 0.00 0.00 2.34
222 223 8.402798 TCAAAGAAAAATGCCTATGACTTACA 57.597 30.769 0.00 0.00 0.00 2.41
223 224 8.855110 TCAAAGAAAAATGCCTATGACTTACAA 58.145 29.630 0.00 0.00 0.00 2.41
224 225 9.643693 CAAAGAAAAATGCCTATGACTTACAAT 57.356 29.630 0.00 0.00 0.00 2.71
225 226 9.860898 AAAGAAAAATGCCTATGACTTACAATC 57.139 29.630 0.00 0.00 0.00 2.67
226 227 8.000780 AGAAAAATGCCTATGACTTACAATCC 57.999 34.615 0.00 0.00 0.00 3.01
227 228 7.836183 AGAAAAATGCCTATGACTTACAATCCT 59.164 33.333 0.00 0.00 0.00 3.24
228 229 9.120538 GAAAAATGCCTATGACTTACAATCCTA 57.879 33.333 0.00 0.00 0.00 2.94
229 230 9.474313 AAAAATGCCTATGACTTACAATCCTAA 57.526 29.630 0.00 0.00 0.00 2.69
233 234 7.272978 TGCCTATGACTTACAATCCTAAGAAC 58.727 38.462 0.00 0.00 0.00 3.01
236 237 7.928706 CCTATGACTTACAATCCTAAGAACCAG 59.071 40.741 0.00 0.00 0.00 4.00
244 245 6.410540 ACAATCCTAAGAACCAGACAATCTC 58.589 40.000 0.00 0.00 0.00 2.75
245 246 6.013379 ACAATCCTAAGAACCAGACAATCTCA 60.013 38.462 0.00 0.00 0.00 3.27
247 248 6.627087 TCCTAAGAACCAGACAATCTCAAT 57.373 37.500 0.00 0.00 0.00 2.57
250 251 6.989169 CCTAAGAACCAGACAATCTCAATAGG 59.011 42.308 0.00 0.00 0.00 2.57
299 303 6.419413 TCCAAAATTTCGTTGAAAATCCTTCG 59.581 34.615 0.00 0.00 35.11 3.79
313 318 3.664551 TCCTTCGAATAGAGTCCCTCA 57.335 47.619 0.00 0.00 32.06 3.86
334 339 2.068831 ATTCTGGGGTACAAAGGGGA 57.931 50.000 0.00 0.00 0.00 4.81
360 372 6.599445 AGGTTAGCTGCTCAAAAGATGATAT 58.401 36.000 4.91 0.00 37.44 1.63
362 374 6.484643 GGTTAGCTGCTCAAAAGATGATATCA 59.515 38.462 4.91 8.10 37.44 2.15
364 376 5.064558 AGCTGCTCAAAAGATGATATCAGG 58.935 41.667 11.78 0.00 37.44 3.86
381 393 4.379339 TCAGGTGCCTTACAAACAAAAC 57.621 40.909 0.00 0.00 0.00 2.43
385 397 3.110358 GTGCCTTACAAACAAAACGACC 58.890 45.455 0.00 0.00 0.00 4.79
395 407 3.679824 ACAAAACGACCCAAAAACCAA 57.320 38.095 0.00 0.00 0.00 3.67
397 409 3.997681 ACAAAACGACCCAAAAACCAAAG 59.002 39.130 0.00 0.00 0.00 2.77
418 430 6.959639 AAGATGTTCACACCAGTACAAATT 57.040 33.333 0.00 0.00 0.00 1.82
426 438 7.809546 TCACACCAGTACAAATTTCACATTA 57.190 32.000 0.00 0.00 0.00 1.90
448 460 7.492352 TTAACTCTCACAAACTTCTAAAGCC 57.508 36.000 0.00 0.00 0.00 4.35
459 471 3.330701 ACTTCTAAAGCCCCATTCTGTCA 59.669 43.478 0.00 0.00 0.00 3.58
460 472 3.634397 TCTAAAGCCCCATTCTGTCAG 57.366 47.619 0.00 0.00 0.00 3.51
461 473 3.181329 TCTAAAGCCCCATTCTGTCAGA 58.819 45.455 0.00 0.00 0.00 3.27
462 474 2.503895 AAAGCCCCATTCTGTCAGAG 57.496 50.000 2.12 0.00 0.00 3.35
463 475 0.034670 AAGCCCCATTCTGTCAGAGC 60.035 55.000 2.12 2.86 0.00 4.09
464 476 1.203441 AGCCCCATTCTGTCAGAGCA 61.203 55.000 12.13 0.00 0.00 4.26
465 477 0.106819 GCCCCATTCTGTCAGAGCAT 60.107 55.000 2.12 0.00 0.00 3.79
466 478 1.676746 CCCCATTCTGTCAGAGCATG 58.323 55.000 2.12 5.21 0.00 4.06
467 479 1.676746 CCCATTCTGTCAGAGCATGG 58.323 55.000 20.36 20.36 34.08 3.66
468 480 1.064906 CCCATTCTGTCAGAGCATGGT 60.065 52.381 23.37 0.00 32.98 3.55
469 481 2.619849 CCCATTCTGTCAGAGCATGGTT 60.620 50.000 23.37 0.00 32.98 3.67
470 482 3.370846 CCCATTCTGTCAGAGCATGGTTA 60.371 47.826 23.37 1.86 32.98 2.85
471 483 4.264253 CCATTCTGTCAGAGCATGGTTAA 58.736 43.478 19.51 0.00 31.17 2.01
472 484 4.885907 CCATTCTGTCAGAGCATGGTTAAT 59.114 41.667 19.51 0.05 31.17 1.40
473 485 6.057533 CCATTCTGTCAGAGCATGGTTAATA 58.942 40.000 19.51 0.00 31.17 0.98
474 486 6.204301 CCATTCTGTCAGAGCATGGTTAATAG 59.796 42.308 19.51 0.00 31.17 1.73
475 487 5.939764 TCTGTCAGAGCATGGTTAATAGT 57.060 39.130 0.00 0.00 0.00 2.12
476 488 7.418337 TTCTGTCAGAGCATGGTTAATAGTA 57.582 36.000 2.12 0.00 0.00 1.82
477 489 7.603180 TCTGTCAGAGCATGGTTAATAGTAT 57.397 36.000 0.00 0.00 0.00 2.12
478 490 8.706322 TCTGTCAGAGCATGGTTAATAGTATA 57.294 34.615 0.00 0.00 0.00 1.47
479 491 8.797438 TCTGTCAGAGCATGGTTAATAGTATAG 58.203 37.037 0.00 0.00 0.00 1.31
480 492 7.378966 TGTCAGAGCATGGTTAATAGTATAGC 58.621 38.462 0.00 0.00 0.00 2.97
481 493 6.814146 GTCAGAGCATGGTTAATAGTATAGCC 59.186 42.308 0.00 0.00 0.00 3.93
482 494 6.496911 TCAGAGCATGGTTAATAGTATAGCCA 59.503 38.462 0.00 3.65 39.96 4.75
483 495 6.815641 CAGAGCATGGTTAATAGTATAGCCAG 59.184 42.308 0.00 2.11 39.18 4.85
484 496 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
485 497 5.249393 AGCATGGTTAATAGTATAGCCAGCT 59.751 40.000 0.00 0.00 39.18 4.24
486 498 5.352569 GCATGGTTAATAGTATAGCCAGCTG 59.647 44.000 6.78 6.78 39.18 4.24
487 499 4.894784 TGGTTAATAGTATAGCCAGCTGC 58.105 43.478 8.66 3.91 41.71 5.25
511 523 3.797039 GCTATAAGCCAGTGTCATGTCA 58.203 45.455 0.00 0.00 34.48 3.58
512 524 4.384056 GCTATAAGCCAGTGTCATGTCAT 58.616 43.478 0.00 0.00 34.48 3.06
513 525 5.541845 GCTATAAGCCAGTGTCATGTCATA 58.458 41.667 0.00 0.00 34.48 2.15
514 526 6.169094 GCTATAAGCCAGTGTCATGTCATAT 58.831 40.000 0.00 0.00 34.48 1.78
515 527 7.323420 GCTATAAGCCAGTGTCATGTCATATA 58.677 38.462 0.00 0.00 34.48 0.86
516 528 7.984050 GCTATAAGCCAGTGTCATGTCATATAT 59.016 37.037 0.00 0.00 34.48 0.86
519 531 6.924913 AGCCAGTGTCATGTCATATATAGT 57.075 37.500 0.00 0.00 0.00 2.12
520 532 6.929625 AGCCAGTGTCATGTCATATATAGTC 58.070 40.000 0.00 0.00 0.00 2.59
521 533 6.071108 AGCCAGTGTCATGTCATATATAGTCC 60.071 42.308 0.00 0.00 0.00 3.85
522 534 6.295292 GCCAGTGTCATGTCATATATAGTCCA 60.295 42.308 0.00 0.00 0.00 4.02
523 535 7.580302 GCCAGTGTCATGTCATATATAGTCCAT 60.580 40.741 0.00 0.00 0.00 3.41
524 536 8.316946 CCAGTGTCATGTCATATATAGTCCATT 58.683 37.037 0.00 0.00 0.00 3.16
525 537 9.716531 CAGTGTCATGTCATATATAGTCCATTT 57.283 33.333 0.00 0.00 0.00 2.32
540 552 8.848474 ATAGTCCATTTATAGCCAACATGTAC 57.152 34.615 0.00 0.00 0.00 2.90
541 553 6.658849 AGTCCATTTATAGCCAACATGTACA 58.341 36.000 0.00 0.00 0.00 2.90
542 554 7.116075 AGTCCATTTATAGCCAACATGTACAA 58.884 34.615 0.00 0.00 0.00 2.41
543 555 7.779798 AGTCCATTTATAGCCAACATGTACAAT 59.220 33.333 0.00 0.00 0.00 2.71
544 556 9.062524 GTCCATTTATAGCCAACATGTACAATA 57.937 33.333 0.00 0.00 0.00 1.90
545 557 9.283768 TCCATTTATAGCCAACATGTACAATAG 57.716 33.333 0.00 0.00 0.00 1.73
546 558 9.066892 CCATTTATAGCCAACATGTACAATAGT 57.933 33.333 0.00 0.00 0.00 2.12
592 604 6.531503 TTTTGTTATGTGACCCACTTTTCA 57.468 33.333 0.00 0.00 35.11 2.69
593 605 6.723298 TTTGTTATGTGACCCACTTTTCAT 57.277 33.333 0.00 0.00 35.11 2.57
594 606 6.723298 TTGTTATGTGACCCACTTTTCATT 57.277 33.333 0.00 0.00 35.11 2.57
595 607 6.325919 TGTTATGTGACCCACTTTTCATTC 57.674 37.500 0.00 0.00 35.11 2.67
596 608 6.068010 TGTTATGTGACCCACTTTTCATTCT 58.932 36.000 0.00 0.00 35.11 2.40
597 609 6.206634 TGTTATGTGACCCACTTTTCATTCTC 59.793 38.462 0.00 0.00 35.11 2.87
598 610 4.163441 TGTGACCCACTTTTCATTCTCA 57.837 40.909 0.00 0.00 35.11 3.27
599 611 4.728772 TGTGACCCACTTTTCATTCTCAT 58.271 39.130 0.00 0.00 35.11 2.90
600 612 5.875224 TGTGACCCACTTTTCATTCTCATA 58.125 37.500 0.00 0.00 35.11 2.15
601 613 6.303054 TGTGACCCACTTTTCATTCTCATAA 58.697 36.000 0.00 0.00 35.11 1.90
602 614 6.775142 TGTGACCCACTTTTCATTCTCATAAA 59.225 34.615 0.00 0.00 35.11 1.40
603 615 7.040478 TGTGACCCACTTTTCATTCTCATAAAG 60.040 37.037 0.00 0.00 35.11 1.85
604 616 7.004086 TGACCCACTTTTCATTCTCATAAAGT 58.996 34.615 0.00 0.00 40.42 2.66
608 620 6.917533 CACTTTTCATTCTCATAAAGTGCCT 58.082 36.000 12.00 0.00 45.76 4.75
609 621 8.044060 CACTTTTCATTCTCATAAAGTGCCTA 57.956 34.615 12.00 0.00 45.76 3.93
610 622 8.180267 CACTTTTCATTCTCATAAAGTGCCTAG 58.820 37.037 12.00 0.00 45.76 3.02
611 623 7.337942 ACTTTTCATTCTCATAAAGTGCCTAGG 59.662 37.037 3.67 3.67 38.86 3.02
612 624 6.560003 TTCATTCTCATAAAGTGCCTAGGA 57.440 37.500 14.75 0.00 0.00 2.94
613 625 6.166984 TCATTCTCATAAAGTGCCTAGGAG 57.833 41.667 14.75 0.00 0.00 3.69
614 626 4.408182 TTCTCATAAAGTGCCTAGGAGC 57.592 45.455 14.75 3.68 29.37 4.70
615 627 2.362397 TCTCATAAAGTGCCTAGGAGCG 59.638 50.000 14.75 0.00 34.65 5.03
616 628 1.202533 TCATAAAGTGCCTAGGAGCGC 60.203 52.381 14.75 0.00 43.70 5.92
631 643 4.504916 CGCGTGCTAGAGCTGGCT 62.505 66.667 7.36 0.00 42.66 4.75
632 644 2.584694 GCGTGCTAGAGCTGGCTC 60.585 66.667 14.02 14.02 42.66 4.70
640 652 4.996976 GAGCTGGCTCTTCACGAA 57.003 55.556 14.51 0.00 39.80 3.85
641 653 2.748268 GAGCTGGCTCTTCACGAAG 58.252 57.895 14.51 0.08 39.80 3.79
642 654 0.244994 GAGCTGGCTCTTCACGAAGA 59.755 55.000 14.51 9.08 44.47 2.87
648 660 2.261671 TCTTCACGAAGAGCCCGC 59.738 61.111 5.38 0.00 42.06 6.13
649 661 2.262915 CTTCACGAAGAGCCCGCT 59.737 61.111 0.20 0.00 40.79 5.52
650 662 1.374758 CTTCACGAAGAGCCCGCTT 60.375 57.895 0.20 0.00 40.79 4.68
651 663 0.108804 CTTCACGAAGAGCCCGCTTA 60.109 55.000 0.20 0.00 40.79 3.09
652 664 0.389426 TTCACGAAGAGCCCGCTTAC 60.389 55.000 0.00 0.00 0.00 2.34
653 665 1.810030 CACGAAGAGCCCGCTTACC 60.810 63.158 0.00 0.00 0.00 2.85
654 666 1.982938 ACGAAGAGCCCGCTTACCT 60.983 57.895 0.00 0.00 0.00 3.08
655 667 1.218316 CGAAGAGCCCGCTTACCTT 59.782 57.895 0.00 0.00 0.00 3.50
656 668 0.391263 CGAAGAGCCCGCTTACCTTT 60.391 55.000 0.00 0.00 0.00 3.11
657 669 1.822506 GAAGAGCCCGCTTACCTTTT 58.177 50.000 0.00 0.00 0.00 2.27
658 670 1.738350 GAAGAGCCCGCTTACCTTTTC 59.262 52.381 0.00 0.00 0.00 2.29
659 671 0.984995 AGAGCCCGCTTACCTTTTCT 59.015 50.000 0.00 0.00 0.00 2.52
660 672 1.066071 AGAGCCCGCTTACCTTTTCTC 60.066 52.381 0.00 0.00 0.00 2.87
661 673 0.984995 AGCCCGCTTACCTTTTCTCT 59.015 50.000 0.00 0.00 0.00 3.10
662 674 1.066071 AGCCCGCTTACCTTTTCTCTC 60.066 52.381 0.00 0.00 0.00 3.20
663 675 2.012554 GCCCGCTTACCTTTTCTCTCC 61.013 57.143 0.00 0.00 0.00 3.71
664 676 1.555533 CCCGCTTACCTTTTCTCTCCT 59.444 52.381 0.00 0.00 0.00 3.69
665 677 2.418884 CCCGCTTACCTTTTCTCTCCTC 60.419 54.545 0.00 0.00 0.00 3.71
666 678 2.498078 CCGCTTACCTTTTCTCTCCTCT 59.502 50.000 0.00 0.00 0.00 3.69
667 679 3.055747 CCGCTTACCTTTTCTCTCCTCTT 60.056 47.826 0.00 0.00 0.00 2.85
668 680 4.177783 CGCTTACCTTTTCTCTCCTCTTC 58.822 47.826 0.00 0.00 0.00 2.87
669 681 4.081917 CGCTTACCTTTTCTCTCCTCTTCT 60.082 45.833 0.00 0.00 0.00 2.85
670 682 5.416083 GCTTACCTTTTCTCTCCTCTTCTC 58.584 45.833 0.00 0.00 0.00 2.87
671 683 5.186992 GCTTACCTTTTCTCTCCTCTTCTCT 59.813 44.000 0.00 0.00 0.00 3.10
672 684 6.295632 GCTTACCTTTTCTCTCCTCTTCTCTT 60.296 42.308 0.00 0.00 0.00 2.85
673 685 7.619512 TTACCTTTTCTCTCCTCTTCTCTTT 57.380 36.000 0.00 0.00 0.00 2.52
674 686 6.109156 ACCTTTTCTCTCCTCTTCTCTTTC 57.891 41.667 0.00 0.00 0.00 2.62
675 687 5.012664 ACCTTTTCTCTCCTCTTCTCTTTCC 59.987 44.000 0.00 0.00 0.00 3.13
676 688 5.248248 CCTTTTCTCTCCTCTTCTCTTTCCT 59.752 44.000 0.00 0.00 0.00 3.36
677 689 5.993748 TTTCTCTCCTCTTCTCTTTCCTC 57.006 43.478 0.00 0.00 0.00 3.71
678 690 3.976015 TCTCTCCTCTTCTCTTTCCTCC 58.024 50.000 0.00 0.00 0.00 4.30
679 691 3.335183 TCTCTCCTCTTCTCTTTCCTCCA 59.665 47.826 0.00 0.00 0.00 3.86
680 692 4.093011 CTCTCCTCTTCTCTTTCCTCCAA 58.907 47.826 0.00 0.00 0.00 3.53
681 693 3.835395 TCTCCTCTTCTCTTTCCTCCAAC 59.165 47.826 0.00 0.00 0.00 3.77
682 694 3.837731 CTCCTCTTCTCTTTCCTCCAACT 59.162 47.826 0.00 0.00 0.00 3.16
683 695 5.011982 TCCTCTTCTCTTTCCTCCAACTA 57.988 43.478 0.00 0.00 0.00 2.24
684 696 5.403512 TCCTCTTCTCTTTCCTCCAACTAA 58.596 41.667 0.00 0.00 0.00 2.24
685 697 5.482175 TCCTCTTCTCTTTCCTCCAACTAAG 59.518 44.000 0.00 0.00 0.00 2.18
686 698 5.153950 TCTTCTCTTTCCTCCAACTAAGC 57.846 43.478 0.00 0.00 0.00 3.09
687 699 4.593206 TCTTCTCTTTCCTCCAACTAAGCA 59.407 41.667 0.00 0.00 0.00 3.91
688 700 4.273148 TCTCTTTCCTCCAACTAAGCAC 57.727 45.455 0.00 0.00 0.00 4.40
689 701 3.646162 TCTCTTTCCTCCAACTAAGCACA 59.354 43.478 0.00 0.00 0.00 4.57
690 702 4.102524 TCTCTTTCCTCCAACTAAGCACAA 59.897 41.667 0.00 0.00 0.00 3.33
691 703 4.787551 TCTTTCCTCCAACTAAGCACAAA 58.212 39.130 0.00 0.00 0.00 2.83
692 704 5.385198 TCTTTCCTCCAACTAAGCACAAAT 58.615 37.500 0.00 0.00 0.00 2.32
693 705 6.539173 TCTTTCCTCCAACTAAGCACAAATA 58.461 36.000 0.00 0.00 0.00 1.40
694 706 7.175104 TCTTTCCTCCAACTAAGCACAAATAT 58.825 34.615 0.00 0.00 0.00 1.28
695 707 8.325787 TCTTTCCTCCAACTAAGCACAAATATA 58.674 33.333 0.00 0.00 0.00 0.86
696 708 7.859325 TTCCTCCAACTAAGCACAAATATAC 57.141 36.000 0.00 0.00 0.00 1.47
697 709 7.195374 TCCTCCAACTAAGCACAAATATACT 57.805 36.000 0.00 0.00 0.00 2.12
698 710 8.313944 TCCTCCAACTAAGCACAAATATACTA 57.686 34.615 0.00 0.00 0.00 1.82
699 711 8.421784 TCCTCCAACTAAGCACAAATATACTAG 58.578 37.037 0.00 0.00 0.00 2.57
700 712 8.204836 CCTCCAACTAAGCACAAATATACTAGT 58.795 37.037 0.00 0.00 0.00 2.57
701 713 9.601217 CTCCAACTAAGCACAAATATACTAGTT 57.399 33.333 0.00 0.00 0.00 2.24
702 714 9.953565 TCCAACTAAGCACAAATATACTAGTTT 57.046 29.630 0.00 0.00 0.00 2.66
720 732 8.658499 ACTAGTTTATTTCTTATAACCCGCTG 57.342 34.615 0.00 0.00 0.00 5.18
721 733 8.480501 ACTAGTTTATTTCTTATAACCCGCTGA 58.519 33.333 0.00 0.00 0.00 4.26
722 734 9.490379 CTAGTTTATTTCTTATAACCCGCTGAT 57.510 33.333 0.00 0.00 0.00 2.90
723 735 8.747538 AGTTTATTTCTTATAACCCGCTGATT 57.252 30.769 0.00 0.00 0.00 2.57
724 736 8.837389 AGTTTATTTCTTATAACCCGCTGATTC 58.163 33.333 0.00 0.00 0.00 2.52
725 737 8.617809 GTTTATTTCTTATAACCCGCTGATTCA 58.382 33.333 0.00 0.00 0.00 2.57
726 738 8.740123 TTATTTCTTATAACCCGCTGATTCAA 57.260 30.769 0.00 0.00 0.00 2.69
727 739 6.431198 TTTCTTATAACCCGCTGATTCAAC 57.569 37.500 0.00 0.00 0.00 3.18
728 740 5.353394 TCTTATAACCCGCTGATTCAACT 57.647 39.130 0.00 0.00 0.00 3.16
729 741 5.741011 TCTTATAACCCGCTGATTCAACTT 58.259 37.500 0.00 0.00 0.00 2.66
730 742 6.177610 TCTTATAACCCGCTGATTCAACTTT 58.822 36.000 0.00 0.00 0.00 2.66
731 743 7.332557 TCTTATAACCCGCTGATTCAACTTTA 58.667 34.615 0.00 0.00 0.00 1.85
732 744 7.990886 TCTTATAACCCGCTGATTCAACTTTAT 59.009 33.333 0.00 0.00 0.00 1.40
733 745 8.514330 TTATAACCCGCTGATTCAACTTTATT 57.486 30.769 0.00 0.00 0.00 1.40
734 746 4.701956 ACCCGCTGATTCAACTTTATTG 57.298 40.909 0.00 0.00 0.00 1.90
735 747 4.079253 ACCCGCTGATTCAACTTTATTGT 58.921 39.130 0.00 0.00 0.00 2.71
736 748 5.250200 ACCCGCTGATTCAACTTTATTGTA 58.750 37.500 0.00 0.00 0.00 2.41
737 749 5.123344 ACCCGCTGATTCAACTTTATTGTAC 59.877 40.000 0.00 0.00 0.00 2.90
738 750 5.354234 CCCGCTGATTCAACTTTATTGTACT 59.646 40.000 0.00 0.00 0.00 2.73
739 751 6.128007 CCCGCTGATTCAACTTTATTGTACTT 60.128 38.462 0.00 0.00 0.00 2.24
740 752 6.742718 CCGCTGATTCAACTTTATTGTACTTG 59.257 38.462 0.00 0.00 0.00 3.16
741 753 6.249260 CGCTGATTCAACTTTATTGTACTTGC 59.751 38.462 0.00 0.00 0.00 4.01
742 754 7.308435 GCTGATTCAACTTTATTGTACTTGCT 58.692 34.615 0.00 0.00 0.00 3.91
743 755 7.483059 GCTGATTCAACTTTATTGTACTTGCTC 59.517 37.037 0.00 0.00 0.00 4.26
744 756 8.621532 TGATTCAACTTTATTGTACTTGCTCT 57.378 30.769 0.00 0.00 0.00 4.09
745 757 8.721478 TGATTCAACTTTATTGTACTTGCTCTC 58.279 33.333 0.00 0.00 0.00 3.20
753 765 9.160496 CTTTATTGTACTTGCTCTCAATCTCTT 57.840 33.333 0.00 0.00 33.48 2.85
766 778 3.138304 CAATCTCTTCCGTGTTGTCCAA 58.862 45.455 0.00 0.00 0.00 3.53
768 780 0.859232 CTCTTCCGTGTTGTCCAACG 59.141 55.000 5.75 0.00 43.94 4.10
780 792 4.202233 TGTTGTCCAACGGTACAAGACATA 60.202 41.667 5.75 0.00 43.94 2.29
785 797 2.273370 ACGGTACAAGACATAGCACG 57.727 50.000 0.00 0.00 0.00 5.34
793 805 0.833287 AGACATAGCACGGCTCCAAT 59.167 50.000 1.46 0.00 40.44 3.16
794 806 2.039418 AGACATAGCACGGCTCCAATA 58.961 47.619 1.46 0.00 40.44 1.90
795 807 2.634940 AGACATAGCACGGCTCCAATAT 59.365 45.455 1.46 0.00 40.44 1.28
796 808 3.832490 AGACATAGCACGGCTCCAATATA 59.168 43.478 1.46 0.00 40.44 0.86
797 809 4.467795 AGACATAGCACGGCTCCAATATAT 59.532 41.667 1.46 0.00 40.44 0.86
798 810 4.759782 ACATAGCACGGCTCCAATATATC 58.240 43.478 1.46 0.00 40.44 1.63
799 811 4.467795 ACATAGCACGGCTCCAATATATCT 59.532 41.667 1.46 0.00 40.44 1.98
800 812 5.656859 ACATAGCACGGCTCCAATATATCTA 59.343 40.000 1.46 0.00 40.44 1.98
801 813 4.727507 AGCACGGCTCCAATATATCTAG 57.272 45.455 0.00 0.00 30.62 2.43
802 814 4.090090 AGCACGGCTCCAATATATCTAGT 58.910 43.478 0.00 0.00 30.62 2.57
803 815 4.081972 AGCACGGCTCCAATATATCTAGTG 60.082 45.833 0.00 0.00 30.62 2.74
804 816 4.177026 CACGGCTCCAATATATCTAGTGC 58.823 47.826 0.00 0.00 0.00 4.40
805 817 3.832490 ACGGCTCCAATATATCTAGTGCA 59.168 43.478 0.00 0.00 0.00 4.57
806 818 4.177026 CGGCTCCAATATATCTAGTGCAC 58.823 47.826 9.40 9.40 0.00 4.57
807 819 4.081972 CGGCTCCAATATATCTAGTGCACT 60.082 45.833 25.12 25.12 0.00 4.40
808 820 5.567623 CGGCTCCAATATATCTAGTGCACTT 60.568 44.000 27.06 10.01 0.00 3.16
809 821 6.234177 GGCTCCAATATATCTAGTGCACTTT 58.766 40.000 27.06 12.94 0.00 2.66
810 822 6.370166 GGCTCCAATATATCTAGTGCACTTTC 59.630 42.308 27.06 0.00 0.00 2.62
811 823 6.090088 GCTCCAATATATCTAGTGCACTTTCG 59.910 42.308 27.06 13.97 0.00 3.46
812 824 6.455647 TCCAATATATCTAGTGCACTTTCGG 58.544 40.000 27.06 14.12 0.00 4.30
813 825 6.266786 TCCAATATATCTAGTGCACTTTCGGA 59.733 38.462 27.06 17.59 0.00 4.55
847 859 6.386927 AGTGTCCAATATATCTCCAAACAGGA 59.613 38.462 0.00 0.00 46.75 3.86
913 925 2.285083 TCACACACAGCCAAAGTACAC 58.715 47.619 0.00 0.00 0.00 2.90
926 938 4.339429 CAAAGTACACACCAAACAGTTCG 58.661 43.478 0.00 0.00 0.00 3.95
953 965 5.065613 TGCTTATCCTTTCCCTTGCATAT 57.934 39.130 0.00 0.00 0.00 1.78
963 975 3.250617 TCCCTTGCATATATCTCTGCCA 58.749 45.455 0.00 0.00 37.59 4.92
1007 1019 3.793144 CTCGCGCTCCAACAAGCC 61.793 66.667 5.56 0.00 39.17 4.35
1057 1069 3.376935 ATCCAGCTCGCGACCAAGG 62.377 63.158 3.71 5.59 0.00 3.61
1198 1210 3.071206 GGGAGAGCGGCAGAGTGA 61.071 66.667 1.45 0.00 0.00 3.41
1227 1239 1.301479 GTTCGGGAACAAGGACGCT 60.301 57.895 6.68 0.00 40.84 5.07
1297 1309 1.135731 GACGTCGAGCAGGTGAGAG 59.864 63.158 0.00 0.00 0.00 3.20
1310 1322 1.984570 TGAGAGCCCGTTCCCTGAG 60.985 63.158 0.00 0.00 0.00 3.35
1316 1328 3.710722 CCGTTCCCTGAGCTGCCT 61.711 66.667 0.00 0.00 0.00 4.75
1331 1343 1.948145 CTGCCTCTGAATCTCCATTGC 59.052 52.381 0.00 0.00 0.00 3.56
1332 1344 1.562942 TGCCTCTGAATCTCCATTGCT 59.437 47.619 0.00 0.00 0.00 3.91
1333 1345 1.948145 GCCTCTGAATCTCCATTGCTG 59.052 52.381 0.00 0.00 0.00 4.41
1334 1346 1.948145 CCTCTGAATCTCCATTGCTGC 59.052 52.381 0.00 0.00 0.00 5.25
1545 1557 1.403780 GCCAAGTACGACGTCAAGGAT 60.404 52.381 17.16 0.00 0.00 3.24
1673 1685 3.344515 GTTTGGGGTGTGTAGATTCTCC 58.655 50.000 0.00 0.00 0.00 3.71
1763 1775 0.663153 AACGACTGACCTTGCTTTGC 59.337 50.000 0.00 0.00 0.00 3.68
1840 1852 1.148310 CGTTGCGTCATCCTTGAACT 58.852 50.000 0.00 0.00 32.48 3.01
1848 1860 2.485814 GTCATCCTTGAACTGAGGCAAC 59.514 50.000 0.00 0.00 34.17 4.17
1898 1913 1.818642 ACCTTGCTTCAGCTTGCTAG 58.181 50.000 0.00 7.31 42.66 3.42
2065 2080 5.136828 TCATGTATATTTGACCCGGCATTT 58.863 37.500 0.00 0.00 0.00 2.32
2066 2081 6.299922 TCATGTATATTTGACCCGGCATTTA 58.700 36.000 0.00 0.00 0.00 1.40
2067 2082 6.429692 TCATGTATATTTGACCCGGCATTTAG 59.570 38.462 0.00 0.00 0.00 1.85
2068 2083 5.686753 TGTATATTTGACCCGGCATTTAGT 58.313 37.500 0.00 0.00 0.00 2.24
2069 2084 5.529430 TGTATATTTGACCCGGCATTTAGTG 59.471 40.000 0.00 0.00 0.00 2.74
2070 2085 1.540267 TTTGACCCGGCATTTAGTGG 58.460 50.000 0.00 0.00 0.00 4.00
2242 2277 3.120199 CCAGACAGTATTTTTCTGCCACG 60.120 47.826 0.00 0.00 36.26 4.94
2280 2315 7.305763 CGAAGAAATCACAAAAACTAAAACCCG 60.306 37.037 0.00 0.00 0.00 5.28
2416 2453 8.582437 TGCTCTATGTACTACAGTTTTACAACT 58.418 33.333 0.00 0.00 44.72 3.16
2448 2506 2.185350 CTACCTCCGCCTGCACAG 59.815 66.667 0.00 0.00 0.00 3.66
2959 3019 2.096496 CAGAATCCACGAATGCCTTGAC 59.904 50.000 0.00 0.00 0.00 3.18
2970 3030 4.528674 CCTTGACGAGGCCATGAG 57.471 61.111 5.01 0.00 39.09 2.90
2974 3034 0.674581 TTGACGAGGCCATGAGCAAG 60.675 55.000 5.01 0.00 46.50 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.628500 AGTATTCTTCAAGTTAAGGTTGAGTTT 57.372 29.630 1.52 0.00 35.39 2.66
29 30 9.246670 ACCCTTAACAAGTAAAAGTTGTAGTTT 57.753 29.630 0.80 0.00 40.60 2.66
30 31 8.812513 ACCCTTAACAAGTAAAAGTTGTAGTT 57.187 30.769 0.80 0.00 40.60 2.24
31 32 8.270030 AGACCCTTAACAAGTAAAAGTTGTAGT 58.730 33.333 0.80 0.00 40.60 2.73
32 33 8.672823 AGACCCTTAACAAGTAAAAGTTGTAG 57.327 34.615 0.80 0.00 40.60 2.74
34 35 9.636789 ATTAGACCCTTAACAAGTAAAAGTTGT 57.363 29.630 0.00 0.00 43.10 3.32
36 37 9.856162 TGATTAGACCCTTAACAAGTAAAAGTT 57.144 29.630 0.00 0.00 0.00 2.66
37 38 9.281371 GTGATTAGACCCTTAACAAGTAAAAGT 57.719 33.333 0.00 0.00 0.00 2.66
38 39 8.727910 GGTGATTAGACCCTTAACAAGTAAAAG 58.272 37.037 0.00 0.00 0.00 2.27
39 40 8.625786 GGTGATTAGACCCTTAACAAGTAAAA 57.374 34.615 0.00 0.00 0.00 1.52
64 65 2.615773 GGGTCTAGAGGGAGGGGG 59.384 72.222 0.00 0.00 0.00 5.40
65 66 2.021652 AGGGGTCTAGAGGGAGGGG 61.022 68.421 0.00 0.00 0.00 4.79
66 67 1.002242 AGAGGGGTCTAGAGGGAGGG 61.002 65.000 0.00 0.00 0.00 4.30
67 68 0.938192 AAGAGGGGTCTAGAGGGAGG 59.062 60.000 0.00 0.00 0.00 4.30
68 69 1.133294 GGAAGAGGGGTCTAGAGGGAG 60.133 61.905 0.00 0.00 0.00 4.30
69 70 0.935194 GGAAGAGGGGTCTAGAGGGA 59.065 60.000 0.00 0.00 0.00 4.20
70 71 0.105401 GGGAAGAGGGGTCTAGAGGG 60.105 65.000 0.00 0.00 0.00 4.30
71 72 0.468400 CGGGAAGAGGGGTCTAGAGG 60.468 65.000 0.00 0.00 0.00 3.69
72 73 0.551879 TCGGGAAGAGGGGTCTAGAG 59.448 60.000 0.00 0.00 0.00 2.43
73 74 1.145325 GATCGGGAAGAGGGGTCTAGA 59.855 57.143 0.00 0.00 0.00 2.43
74 75 1.146152 AGATCGGGAAGAGGGGTCTAG 59.854 57.143 0.00 0.00 0.00 2.43
75 76 1.232909 AGATCGGGAAGAGGGGTCTA 58.767 55.000 0.00 0.00 0.00 2.59
76 77 0.340208 AAGATCGGGAAGAGGGGTCT 59.660 55.000 0.00 0.00 0.00 3.85
77 78 1.139256 GAAAGATCGGGAAGAGGGGTC 59.861 57.143 0.00 0.00 0.00 4.46
78 79 1.205055 GAAAGATCGGGAAGAGGGGT 58.795 55.000 0.00 0.00 0.00 4.95
79 80 1.139853 CTGAAAGATCGGGAAGAGGGG 59.860 57.143 0.00 0.00 34.07 4.79
80 81 2.111384 TCTGAAAGATCGGGAAGAGGG 58.889 52.381 0.00 0.00 38.67 4.30
81 82 3.895232 TTCTGAAAGATCGGGAAGAGG 57.105 47.619 0.00 0.00 46.36 3.69
82 83 5.470098 TGTTTTTCTGAAAGATCGGGAAGAG 59.530 40.000 2.75 0.00 46.36 2.85
83 84 5.373222 TGTTTTTCTGAAAGATCGGGAAGA 58.627 37.500 2.75 0.00 46.36 2.87
84 85 5.689383 TGTTTTTCTGAAAGATCGGGAAG 57.311 39.130 2.75 0.00 46.36 3.46
85 86 7.663905 TCTTATGTTTTTCTGAAAGATCGGGAA 59.336 33.333 2.75 0.00 46.36 3.97
86 87 7.165485 TCTTATGTTTTTCTGAAAGATCGGGA 58.835 34.615 2.75 0.00 46.36 5.14
87 88 7.377766 TCTTATGTTTTTCTGAAAGATCGGG 57.622 36.000 2.75 0.00 46.36 5.14
88 89 9.846248 AAATCTTATGTTTTTCTGAAAGATCGG 57.154 29.630 2.75 0.00 46.36 4.18
100 101 9.981114 ACATCTTCGGAAAAATCTTATGTTTTT 57.019 25.926 0.00 0.00 40.40 1.94
101 102 9.981114 AACATCTTCGGAAAAATCTTATGTTTT 57.019 25.926 0.00 0.00 32.68 2.43
102 103 9.981114 AAACATCTTCGGAAAAATCTTATGTTT 57.019 25.926 0.00 0.00 39.13 2.83
103 104 9.981114 AAAACATCTTCGGAAAAATCTTATGTT 57.019 25.926 0.00 0.00 36.79 2.71
104 105 9.981114 AAAAACATCTTCGGAAAAATCTTATGT 57.019 25.926 0.00 0.00 0.00 2.29
201 202 7.836183 AGGATTGTAAGTCATAGGCATTTTTCT 59.164 33.333 0.00 0.00 0.00 2.52
218 219 7.918076 AGATTGTCTGGTTCTTAGGATTGTAA 58.082 34.615 0.00 0.00 0.00 2.41
219 220 7.180229 TGAGATTGTCTGGTTCTTAGGATTGTA 59.820 37.037 0.00 0.00 0.00 2.41
220 221 6.013379 TGAGATTGTCTGGTTCTTAGGATTGT 60.013 38.462 0.00 0.00 0.00 2.71
221 222 6.409704 TGAGATTGTCTGGTTCTTAGGATTG 58.590 40.000 0.00 0.00 0.00 2.67
222 223 6.627087 TGAGATTGTCTGGTTCTTAGGATT 57.373 37.500 0.00 0.00 0.00 3.01
223 224 6.627087 TTGAGATTGTCTGGTTCTTAGGAT 57.373 37.500 0.00 0.00 0.00 3.24
224 225 6.627087 ATTGAGATTGTCTGGTTCTTAGGA 57.373 37.500 0.00 0.00 0.00 2.94
225 226 6.989169 CCTATTGAGATTGTCTGGTTCTTAGG 59.011 42.308 0.00 0.00 0.00 2.69
226 227 7.786030 TCCTATTGAGATTGTCTGGTTCTTAG 58.214 38.462 0.00 0.00 0.00 2.18
227 228 7.733773 TCCTATTGAGATTGTCTGGTTCTTA 57.266 36.000 0.00 0.00 0.00 2.10
228 229 6.627087 TCCTATTGAGATTGTCTGGTTCTT 57.373 37.500 0.00 0.00 0.00 2.52
229 230 6.627087 TTCCTATTGAGATTGTCTGGTTCT 57.373 37.500 0.00 0.00 0.00 3.01
267 271 7.707774 TTTCAACGAAATTTTGGAGAATTCC 57.292 32.000 10.22 0.00 44.31 3.01
285 289 6.037281 GGGACTCTATTCGAAGGATTTTCAAC 59.963 42.308 3.35 0.00 0.00 3.18
286 290 6.070194 AGGGACTCTATTCGAAGGATTTTCAA 60.070 38.462 3.35 0.00 0.00 2.69
313 318 2.725227 TCCCCTTTGTACCCCAGAATTT 59.275 45.455 0.00 0.00 0.00 1.82
334 339 5.994250 TCATCTTTTGAGCAGCTAACCTAT 58.006 37.500 0.00 0.00 0.00 2.57
360 372 3.181495 CGTTTTGTTTGTAAGGCACCTGA 60.181 43.478 0.00 0.00 0.00 3.86
362 374 3.018149 TCGTTTTGTTTGTAAGGCACCT 58.982 40.909 0.00 0.00 0.00 4.00
364 376 3.110358 GGTCGTTTTGTTTGTAAGGCAC 58.890 45.455 0.00 0.00 0.00 5.01
381 393 3.726291 ACATCTTTGGTTTTTGGGTCG 57.274 42.857 0.00 0.00 0.00 4.79
385 397 4.570369 GGTGTGAACATCTTTGGTTTTTGG 59.430 41.667 0.00 0.00 0.00 3.28
395 407 6.959639 AATTTGTACTGGTGTGAACATCTT 57.040 33.333 0.00 0.00 0.00 2.40
397 409 6.636850 GTGAAATTTGTACTGGTGTGAACATC 59.363 38.462 0.00 0.00 0.00 3.06
418 430 9.607988 TTAGAAGTTTGTGAGAGTTAATGTGAA 57.392 29.630 0.00 0.00 0.00 3.18
426 438 4.822350 GGGCTTTAGAAGTTTGTGAGAGTT 59.178 41.667 0.00 0.00 0.00 3.01
459 471 6.575254 GCTGGCTATACTATTAACCATGCTCT 60.575 42.308 0.00 0.00 0.00 4.09
460 472 5.582665 GCTGGCTATACTATTAACCATGCTC 59.417 44.000 0.00 0.00 0.00 4.26
461 473 5.249393 AGCTGGCTATACTATTAACCATGCT 59.751 40.000 0.00 0.00 31.38 3.79
462 474 5.352569 CAGCTGGCTATACTATTAACCATGC 59.647 44.000 5.57 0.00 0.00 4.06
463 475 5.352569 GCAGCTGGCTATACTATTAACCATG 59.647 44.000 17.12 0.00 40.25 3.66
464 476 5.491982 GCAGCTGGCTATACTATTAACCAT 58.508 41.667 17.12 0.00 40.25 3.55
465 477 4.894784 GCAGCTGGCTATACTATTAACCA 58.105 43.478 17.12 0.00 40.25 3.67
490 502 3.797039 TGACATGACACTGGCTTATAGC 58.203 45.455 0.00 0.00 41.46 2.97
493 505 9.040259 ACTATATATGACATGACACTGGCTTAT 57.960 33.333 0.00 0.00 31.49 1.73
494 506 8.422577 ACTATATATGACATGACACTGGCTTA 57.577 34.615 0.00 0.00 0.00 3.09
495 507 7.308450 ACTATATATGACATGACACTGGCTT 57.692 36.000 0.00 0.00 0.00 4.35
496 508 6.071108 GGACTATATATGACATGACACTGGCT 60.071 42.308 0.00 0.00 0.00 4.75
497 509 6.102663 GGACTATATATGACATGACACTGGC 58.897 44.000 0.00 0.00 0.00 4.85
498 510 7.232118 TGGACTATATATGACATGACACTGG 57.768 40.000 0.00 0.00 0.00 4.00
499 511 9.716531 AAATGGACTATATATGACATGACACTG 57.283 33.333 0.00 0.00 0.00 3.66
514 526 9.938280 GTACATGTTGGCTATAAATGGACTATA 57.062 33.333 2.30 0.00 30.78 1.31
515 527 8.436778 TGTACATGTTGGCTATAAATGGACTAT 58.563 33.333 2.30 0.00 33.93 2.12
516 528 7.797062 TGTACATGTTGGCTATAAATGGACTA 58.203 34.615 2.30 0.00 33.93 2.59
517 529 6.658849 TGTACATGTTGGCTATAAATGGACT 58.341 36.000 2.30 0.00 33.93 3.85
518 530 6.935741 TGTACATGTTGGCTATAAATGGAC 57.064 37.500 2.30 0.00 33.49 4.02
519 531 9.283768 CTATTGTACATGTTGGCTATAAATGGA 57.716 33.333 2.30 0.00 0.00 3.41
520 532 9.066892 ACTATTGTACATGTTGGCTATAAATGG 57.933 33.333 2.30 0.00 0.00 3.16
526 538 8.870116 TCATCTACTATTGTACATGTTGGCTAT 58.130 33.333 2.30 0.64 30.44 2.97
527 539 8.245195 TCATCTACTATTGTACATGTTGGCTA 57.755 34.615 2.30 0.00 30.44 3.93
528 540 7.124573 TCATCTACTATTGTACATGTTGGCT 57.875 36.000 2.30 0.00 30.44 4.75
529 541 7.786178 TTCATCTACTATTGTACATGTTGGC 57.214 36.000 2.30 0.00 30.44 4.52
568 580 6.936279 TGAAAAGTGGGTCACATAACAAAAA 58.064 32.000 0.78 0.00 36.74 1.94
569 581 6.531503 TGAAAAGTGGGTCACATAACAAAA 57.468 33.333 0.78 0.00 36.74 2.44
570 582 6.723298 ATGAAAAGTGGGTCACATAACAAA 57.277 33.333 0.78 0.00 36.74 2.83
571 583 6.549364 AGAATGAAAAGTGGGTCACATAACAA 59.451 34.615 0.78 0.00 36.74 2.83
572 584 6.068010 AGAATGAAAAGTGGGTCACATAACA 58.932 36.000 0.78 0.00 36.74 2.41
573 585 6.206634 TGAGAATGAAAAGTGGGTCACATAAC 59.793 38.462 0.78 0.00 36.74 1.89
574 586 6.303054 TGAGAATGAAAAGTGGGTCACATAA 58.697 36.000 0.78 0.00 36.74 1.90
575 587 5.875224 TGAGAATGAAAAGTGGGTCACATA 58.125 37.500 0.78 0.00 36.74 2.29
576 588 4.728772 TGAGAATGAAAAGTGGGTCACAT 58.271 39.130 0.78 0.00 36.74 3.21
577 589 4.163441 TGAGAATGAAAAGTGGGTCACA 57.837 40.909 0.78 0.00 36.74 3.58
578 590 6.817765 TTATGAGAATGAAAAGTGGGTCAC 57.182 37.500 0.00 0.00 34.10 3.67
579 591 7.004086 ACTTTATGAGAATGAAAAGTGGGTCA 58.996 34.615 0.00 0.00 39.89 4.02
580 592 7.454260 ACTTTATGAGAATGAAAAGTGGGTC 57.546 36.000 0.00 0.00 39.89 4.46
585 597 7.337942 CCTAGGCACTTTATGAGAATGAAAAGT 59.662 37.037 0.00 0.00 41.56 2.66
586 598 7.554118 TCCTAGGCACTTTATGAGAATGAAAAG 59.446 37.037 2.96 0.00 41.75 2.27
587 599 7.402054 TCCTAGGCACTTTATGAGAATGAAAA 58.598 34.615 2.96 0.00 41.75 2.29
588 600 6.957631 TCCTAGGCACTTTATGAGAATGAAA 58.042 36.000 2.96 0.00 41.75 2.69
589 601 6.560003 TCCTAGGCACTTTATGAGAATGAA 57.440 37.500 2.96 0.00 41.75 2.57
590 602 5.453903 GCTCCTAGGCACTTTATGAGAATGA 60.454 44.000 2.96 0.00 41.75 2.57
591 603 4.754114 GCTCCTAGGCACTTTATGAGAATG 59.246 45.833 2.96 0.00 41.75 2.67
592 604 4.502259 CGCTCCTAGGCACTTTATGAGAAT 60.502 45.833 2.96 0.00 41.75 2.40
593 605 3.181475 CGCTCCTAGGCACTTTATGAGAA 60.181 47.826 2.96 0.00 41.75 2.87
594 606 2.362397 CGCTCCTAGGCACTTTATGAGA 59.638 50.000 2.96 0.00 41.75 3.27
595 607 2.748605 CGCTCCTAGGCACTTTATGAG 58.251 52.381 2.96 0.00 41.75 2.90
596 608 1.202533 GCGCTCCTAGGCACTTTATGA 60.203 52.381 2.96 0.00 41.75 2.15
597 609 1.221414 GCGCTCCTAGGCACTTTATG 58.779 55.000 2.96 0.00 41.75 1.90
598 610 0.249489 CGCGCTCCTAGGCACTTTAT 60.249 55.000 5.56 0.00 41.75 1.40
599 611 1.141019 CGCGCTCCTAGGCACTTTA 59.859 57.895 5.56 0.00 41.75 1.85
600 612 2.125512 CGCGCTCCTAGGCACTTT 60.126 61.111 5.56 0.00 41.75 2.66
601 613 3.382832 ACGCGCTCCTAGGCACTT 61.383 61.111 5.73 0.00 41.75 3.16
602 614 4.135153 CACGCGCTCCTAGGCACT 62.135 66.667 5.73 0.00 46.37 4.40
614 626 4.504916 AGCCAGCTCTAGCACGCG 62.505 66.667 3.53 3.53 45.16 6.01
615 627 2.584694 GAGCCAGCTCTAGCACGC 60.585 66.667 12.42 5.05 45.16 5.34
623 635 0.244994 TCTTCGTGAAGAGCCAGCTC 59.755 55.000 11.78 11.78 42.06 4.09
624 636 2.355946 TCTTCGTGAAGAGCCAGCT 58.644 52.632 8.19 0.00 42.06 4.24
625 637 4.996976 TCTTCGTGAAGAGCCAGC 57.003 55.556 8.19 0.00 42.06 4.85
631 643 1.816863 AAGCGGGCTCTTCGTGAAGA 61.817 55.000 11.54 11.54 44.47 2.87
632 644 0.108804 TAAGCGGGCTCTTCGTGAAG 60.109 55.000 3.17 3.17 39.71 3.02
633 645 0.389426 GTAAGCGGGCTCTTCGTGAA 60.389 55.000 0.00 0.00 0.00 3.18
634 646 1.214589 GTAAGCGGGCTCTTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
635 647 1.810030 GGTAAGCGGGCTCTTCGTG 60.810 63.158 0.00 0.00 0.00 4.35
636 648 1.542187 AAGGTAAGCGGGCTCTTCGT 61.542 55.000 0.00 0.00 0.00 3.85
637 649 0.391263 AAAGGTAAGCGGGCTCTTCG 60.391 55.000 0.00 0.00 0.00 3.79
638 650 1.738350 GAAAAGGTAAGCGGGCTCTTC 59.262 52.381 0.00 0.00 0.00 2.87
639 651 1.351350 AGAAAAGGTAAGCGGGCTCTT 59.649 47.619 0.00 0.00 0.00 2.85
640 652 0.984995 AGAAAAGGTAAGCGGGCTCT 59.015 50.000 0.00 0.00 0.00 4.09
641 653 1.066071 AGAGAAAAGGTAAGCGGGCTC 60.066 52.381 0.00 0.00 0.00 4.70
642 654 0.984995 AGAGAAAAGGTAAGCGGGCT 59.015 50.000 0.00 0.00 0.00 5.19
643 655 1.370609 GAGAGAAAAGGTAAGCGGGC 58.629 55.000 0.00 0.00 0.00 6.13
644 656 1.555533 AGGAGAGAAAAGGTAAGCGGG 59.444 52.381 0.00 0.00 0.00 6.13
645 657 2.498078 AGAGGAGAGAAAAGGTAAGCGG 59.502 50.000 0.00 0.00 0.00 5.52
646 658 3.878160 AGAGGAGAGAAAAGGTAAGCG 57.122 47.619 0.00 0.00 0.00 4.68
647 659 5.186992 AGAGAAGAGGAGAGAAAAGGTAAGC 59.813 44.000 0.00 0.00 0.00 3.09
648 660 6.850752 AGAGAAGAGGAGAGAAAAGGTAAG 57.149 41.667 0.00 0.00 0.00 2.34
649 661 7.256368 GGAAAGAGAAGAGGAGAGAAAAGGTAA 60.256 40.741 0.00 0.00 0.00 2.85
650 662 6.211785 GGAAAGAGAAGAGGAGAGAAAAGGTA 59.788 42.308 0.00 0.00 0.00 3.08
651 663 5.012664 GGAAAGAGAAGAGGAGAGAAAAGGT 59.987 44.000 0.00 0.00 0.00 3.50
652 664 5.248248 AGGAAAGAGAAGAGGAGAGAAAAGG 59.752 44.000 0.00 0.00 0.00 3.11
653 665 6.358974 AGGAAAGAGAAGAGGAGAGAAAAG 57.641 41.667 0.00 0.00 0.00 2.27
654 666 5.247337 GGAGGAAAGAGAAGAGGAGAGAAAA 59.753 44.000 0.00 0.00 0.00 2.29
655 667 4.775253 GGAGGAAAGAGAAGAGGAGAGAAA 59.225 45.833 0.00 0.00 0.00 2.52
656 668 4.202727 TGGAGGAAAGAGAAGAGGAGAGAA 60.203 45.833 0.00 0.00 0.00 2.87
657 669 3.335183 TGGAGGAAAGAGAAGAGGAGAGA 59.665 47.826 0.00 0.00 0.00 3.10
658 670 3.707316 TGGAGGAAAGAGAAGAGGAGAG 58.293 50.000 0.00 0.00 0.00 3.20
659 671 3.835395 GTTGGAGGAAAGAGAAGAGGAGA 59.165 47.826 0.00 0.00 0.00 3.71
660 672 3.837731 AGTTGGAGGAAAGAGAAGAGGAG 59.162 47.826 0.00 0.00 0.00 3.69
661 673 3.863086 AGTTGGAGGAAAGAGAAGAGGA 58.137 45.455 0.00 0.00 0.00 3.71
662 674 5.729510 CTTAGTTGGAGGAAAGAGAAGAGG 58.270 45.833 0.00 0.00 0.00 3.69
663 675 5.175127 GCTTAGTTGGAGGAAAGAGAAGAG 58.825 45.833 0.00 0.00 0.00 2.85
664 676 4.593206 TGCTTAGTTGGAGGAAAGAGAAGA 59.407 41.667 0.00 0.00 0.00 2.87
665 677 4.693095 GTGCTTAGTTGGAGGAAAGAGAAG 59.307 45.833 0.00 0.00 0.00 2.85
666 678 4.102524 TGTGCTTAGTTGGAGGAAAGAGAA 59.897 41.667 0.00 0.00 0.00 2.87
667 679 3.646162 TGTGCTTAGTTGGAGGAAAGAGA 59.354 43.478 0.00 0.00 0.00 3.10
668 680 4.008074 TGTGCTTAGTTGGAGGAAAGAG 57.992 45.455 0.00 0.00 0.00 2.85
669 681 4.431416 TTGTGCTTAGTTGGAGGAAAGA 57.569 40.909 0.00 0.00 0.00 2.52
670 682 5.712152 ATTTGTGCTTAGTTGGAGGAAAG 57.288 39.130 0.00 0.00 0.00 2.62
671 683 8.107095 AGTATATTTGTGCTTAGTTGGAGGAAA 58.893 33.333 0.00 0.00 0.00 3.13
672 684 7.630082 AGTATATTTGTGCTTAGTTGGAGGAA 58.370 34.615 0.00 0.00 0.00 3.36
673 685 7.195374 AGTATATTTGTGCTTAGTTGGAGGA 57.805 36.000 0.00 0.00 0.00 3.71
674 686 8.204836 ACTAGTATATTTGTGCTTAGTTGGAGG 58.795 37.037 0.00 0.00 0.00 4.30
675 687 9.601217 AACTAGTATATTTGTGCTTAGTTGGAG 57.399 33.333 0.00 0.00 0.00 3.86
676 688 9.953565 AAACTAGTATATTTGTGCTTAGTTGGA 57.046 29.630 0.00 0.00 0.00 3.53
694 706 9.754382 CAGCGGGTTATAAGAAATAAACTAGTA 57.246 33.333 0.00 0.00 0.00 1.82
695 707 8.480501 TCAGCGGGTTATAAGAAATAAACTAGT 58.519 33.333 0.00 0.00 0.00 2.57
696 708 8.882415 TCAGCGGGTTATAAGAAATAAACTAG 57.118 34.615 0.00 0.00 0.00 2.57
697 709 9.841295 AATCAGCGGGTTATAAGAAATAAACTA 57.159 29.630 0.00 0.00 0.00 2.24
698 710 8.747538 AATCAGCGGGTTATAAGAAATAAACT 57.252 30.769 0.00 0.00 0.00 2.66
699 711 8.617809 TGAATCAGCGGGTTATAAGAAATAAAC 58.382 33.333 0.00 0.00 0.00 2.01
700 712 8.740123 TGAATCAGCGGGTTATAAGAAATAAA 57.260 30.769 0.00 0.00 0.00 1.40
701 713 8.617809 GTTGAATCAGCGGGTTATAAGAAATAA 58.382 33.333 0.00 0.00 0.00 1.40
702 714 7.990886 AGTTGAATCAGCGGGTTATAAGAAATA 59.009 33.333 0.00 0.00 0.00 1.40
703 715 6.828785 AGTTGAATCAGCGGGTTATAAGAAAT 59.171 34.615 0.00 0.00 0.00 2.17
704 716 6.177610 AGTTGAATCAGCGGGTTATAAGAAA 58.822 36.000 0.00 0.00 0.00 2.52
705 717 5.741011 AGTTGAATCAGCGGGTTATAAGAA 58.259 37.500 0.00 0.00 0.00 2.52
706 718 5.353394 AGTTGAATCAGCGGGTTATAAGA 57.647 39.130 0.00 0.00 0.00 2.10
707 719 6.436843 AAAGTTGAATCAGCGGGTTATAAG 57.563 37.500 0.00 0.00 0.00 1.73
708 720 8.402472 CAATAAAGTTGAATCAGCGGGTTATAA 58.598 33.333 0.00 0.00 0.00 0.98
709 721 7.554835 ACAATAAAGTTGAATCAGCGGGTTATA 59.445 33.333 0.00 0.00 0.00 0.98
710 722 6.377146 ACAATAAAGTTGAATCAGCGGGTTAT 59.623 34.615 0.00 0.00 0.00 1.89
711 723 5.708230 ACAATAAAGTTGAATCAGCGGGTTA 59.292 36.000 0.00 0.00 0.00 2.85
712 724 4.522789 ACAATAAAGTTGAATCAGCGGGTT 59.477 37.500 0.00 0.00 0.00 4.11
713 725 4.079253 ACAATAAAGTTGAATCAGCGGGT 58.921 39.130 0.00 0.00 0.00 5.28
714 726 4.701956 ACAATAAAGTTGAATCAGCGGG 57.298 40.909 0.00 0.00 0.00 6.13
715 727 6.422776 AGTACAATAAAGTTGAATCAGCGG 57.577 37.500 0.00 0.00 0.00 5.52
716 728 6.249260 GCAAGTACAATAAAGTTGAATCAGCG 59.751 38.462 0.00 0.00 30.30 5.18
717 729 7.308435 AGCAAGTACAATAAAGTTGAATCAGC 58.692 34.615 0.00 0.00 30.30 4.26
718 730 8.725148 AGAGCAAGTACAATAAAGTTGAATCAG 58.275 33.333 0.00 0.00 30.30 2.90
719 731 8.621532 AGAGCAAGTACAATAAAGTTGAATCA 57.378 30.769 0.00 0.00 30.30 2.57
720 732 8.721478 TGAGAGCAAGTACAATAAAGTTGAATC 58.279 33.333 0.00 0.00 30.30 2.52
721 733 8.621532 TGAGAGCAAGTACAATAAAGTTGAAT 57.378 30.769 0.00 0.00 30.30 2.57
722 734 8.445275 TTGAGAGCAAGTACAATAAAGTTGAA 57.555 30.769 0.00 0.00 30.30 2.69
723 735 8.621532 ATTGAGAGCAAGTACAATAAAGTTGA 57.378 30.769 0.00 0.00 37.45 3.18
724 736 8.725148 AGATTGAGAGCAAGTACAATAAAGTTG 58.275 33.333 0.00 0.00 37.45 3.16
725 737 8.854614 AGATTGAGAGCAAGTACAATAAAGTT 57.145 30.769 0.00 0.00 37.45 2.66
726 738 8.317679 AGAGATTGAGAGCAAGTACAATAAAGT 58.682 33.333 0.00 0.00 37.45 2.66
727 739 8.715191 AGAGATTGAGAGCAAGTACAATAAAG 57.285 34.615 0.00 0.00 37.45 1.85
728 740 9.155975 GAAGAGATTGAGAGCAAGTACAATAAA 57.844 33.333 0.00 0.00 37.45 1.40
729 741 7.766278 GGAAGAGATTGAGAGCAAGTACAATAA 59.234 37.037 0.00 0.00 37.45 1.40
730 742 7.268586 GGAAGAGATTGAGAGCAAGTACAATA 58.731 38.462 0.00 0.00 37.45 1.90
731 743 6.112058 GGAAGAGATTGAGAGCAAGTACAAT 58.888 40.000 0.00 0.00 37.45 2.71
732 744 5.482908 GGAAGAGATTGAGAGCAAGTACAA 58.517 41.667 0.00 0.00 37.45 2.41
733 745 4.380973 CGGAAGAGATTGAGAGCAAGTACA 60.381 45.833 0.00 0.00 37.45 2.90
734 746 4.109050 CGGAAGAGATTGAGAGCAAGTAC 58.891 47.826 0.00 0.00 37.45 2.73
735 747 3.764434 ACGGAAGAGATTGAGAGCAAGTA 59.236 43.478 0.00 0.00 37.45 2.24
736 748 2.564947 ACGGAAGAGATTGAGAGCAAGT 59.435 45.455 0.00 0.00 37.45 3.16
737 749 2.928757 CACGGAAGAGATTGAGAGCAAG 59.071 50.000 0.00 0.00 37.45 4.01
738 750 2.300152 ACACGGAAGAGATTGAGAGCAA 59.700 45.455 0.00 0.00 38.60 3.91
739 751 1.895798 ACACGGAAGAGATTGAGAGCA 59.104 47.619 0.00 0.00 0.00 4.26
740 752 2.663826 ACACGGAAGAGATTGAGAGC 57.336 50.000 0.00 0.00 0.00 4.09
741 753 3.919216 ACAACACGGAAGAGATTGAGAG 58.081 45.455 0.00 0.00 0.00 3.20
742 754 3.306088 GGACAACACGGAAGAGATTGAGA 60.306 47.826 0.00 0.00 0.00 3.27
743 755 2.996621 GGACAACACGGAAGAGATTGAG 59.003 50.000 0.00 0.00 0.00 3.02
744 756 2.367241 TGGACAACACGGAAGAGATTGA 59.633 45.455 0.00 0.00 0.00 2.57
745 757 2.766313 TGGACAACACGGAAGAGATTG 58.234 47.619 0.00 0.00 0.00 2.67
753 765 0.249405 GTACCGTTGGACAACACGGA 60.249 55.000 19.13 2.01 42.50 4.69
766 778 1.135199 CCGTGCTATGTCTTGTACCGT 60.135 52.381 0.00 0.00 0.00 4.83
768 780 1.134788 AGCCGTGCTATGTCTTGTACC 60.135 52.381 0.00 0.00 36.99 3.34
780 792 4.081972 CACTAGATATATTGGAGCCGTGCT 60.082 45.833 0.00 0.00 43.88 4.40
785 797 5.413309 AGTGCACTAGATATATTGGAGCC 57.587 43.478 20.16 0.00 0.00 4.70
793 805 9.244292 AGATATTCCGAAAGTGCACTAGATATA 57.756 33.333 22.01 13.08 0.00 0.86
794 806 8.128322 AGATATTCCGAAAGTGCACTAGATAT 57.872 34.615 22.01 15.66 0.00 1.63
795 807 7.448777 AGAGATATTCCGAAAGTGCACTAGATA 59.551 37.037 22.01 11.95 0.00 1.98
796 808 6.266558 AGAGATATTCCGAAAGTGCACTAGAT 59.733 38.462 22.01 9.75 0.00 1.98
797 809 5.594725 AGAGATATTCCGAAAGTGCACTAGA 59.405 40.000 22.01 11.99 0.00 2.43
798 810 5.837437 AGAGATATTCCGAAAGTGCACTAG 58.163 41.667 22.01 14.36 0.00 2.57
799 811 5.854010 AGAGATATTCCGAAAGTGCACTA 57.146 39.130 22.01 2.96 0.00 2.74
800 812 4.744795 AGAGATATTCCGAAAGTGCACT 57.255 40.909 15.25 15.25 0.00 4.40
801 813 5.460419 CACTAGAGATATTCCGAAAGTGCAC 59.540 44.000 9.40 9.40 0.00 4.57
802 814 5.127194 ACACTAGAGATATTCCGAAAGTGCA 59.873 40.000 0.00 0.00 0.00 4.57
803 815 5.593010 ACACTAGAGATATTCCGAAAGTGC 58.407 41.667 0.00 0.00 0.00 4.40
804 816 6.183360 TGGACACTAGAGATATTCCGAAAGTG 60.183 42.308 0.00 5.65 0.00 3.16
805 817 5.892119 TGGACACTAGAGATATTCCGAAAGT 59.108 40.000 0.00 0.00 0.00 2.66
806 818 6.392625 TGGACACTAGAGATATTCCGAAAG 57.607 41.667 0.00 0.00 0.00 2.62
807 819 6.785337 TTGGACACTAGAGATATTCCGAAA 57.215 37.500 0.00 0.00 0.00 3.46
808 820 6.978674 ATTGGACACTAGAGATATTCCGAA 57.021 37.500 0.00 0.00 0.00 4.30
809 821 9.922477 ATATATTGGACACTAGAGATATTCCGA 57.078 33.333 0.00 0.00 0.00 4.55
847 859 2.880443 TCTGAATCTTTTGCCTGCCTT 58.120 42.857 0.00 0.00 0.00 4.35
926 938 1.064389 AGGGAAAGGATAAGCAGCACC 60.064 52.381 0.00 0.00 0.00 5.01
953 965 2.968574 GAGGTGGAGAATGGCAGAGATA 59.031 50.000 0.00 0.00 0.00 1.98
963 975 1.045911 GGGAGCGAGAGGTGGAGAAT 61.046 60.000 0.00 0.00 45.11 2.40
1099 1111 3.403558 GGTCCTCAGCACTCCCCC 61.404 72.222 0.00 0.00 0.00 5.40
1194 1206 2.224305 CCCGAACTTGAAGAACCTCACT 60.224 50.000 0.00 0.00 0.00 3.41
1198 1210 2.171870 TGTTCCCGAACTTGAAGAACCT 59.828 45.455 0.00 0.00 41.67 3.50
1310 1322 1.948145 CAATGGAGATTCAGAGGCAGC 59.052 52.381 0.00 0.00 0.00 5.25
1314 1326 1.948145 GCAGCAATGGAGATTCAGAGG 59.052 52.381 0.00 0.00 0.00 3.69
1316 1328 1.562942 AGGCAGCAATGGAGATTCAGA 59.437 47.619 0.00 0.00 0.00 3.27
1763 1775 1.069823 CCATGGAGATCAGGTCCTTCG 59.930 57.143 5.56 0.00 34.86 3.79
1877 1892 0.957362 AGCAAGCTGAAGCAAGGTTC 59.043 50.000 4.90 5.12 45.16 3.62
1878 1893 2.157738 CTAGCAAGCTGAAGCAAGGTT 58.842 47.619 4.53 0.00 45.16 3.50
1879 1894 1.072965 ACTAGCAAGCTGAAGCAAGGT 59.927 47.619 4.53 4.69 45.16 3.50
1898 1913 4.495184 GCCGGTTACATAGTTGCATAACAC 60.495 45.833 1.90 0.00 39.30 3.32
2056 2071 1.021968 GTAAGCCACTAAATGCCGGG 58.978 55.000 2.18 0.00 0.00 5.73
2067 2082 1.076332 CGCAGGTTAGTGTAAGCCAC 58.924 55.000 0.00 0.00 44.89 5.01
2068 2083 0.672401 GCGCAGGTTAGTGTAAGCCA 60.672 55.000 0.30 0.00 36.87 4.75
2069 2084 1.366854 GGCGCAGGTTAGTGTAAGCC 61.367 60.000 10.83 0.00 36.87 4.35
2070 2085 1.693083 CGGCGCAGGTTAGTGTAAGC 61.693 60.000 10.83 0.00 36.47 3.09
2071 2086 1.082117 CCGGCGCAGGTTAGTGTAAG 61.082 60.000 19.30 0.00 0.00 2.34
2072 2087 1.079681 CCGGCGCAGGTTAGTGTAA 60.080 57.895 19.30 0.00 0.00 2.41
2073 2088 2.216750 GACCGGCGCAGGTTAGTGTA 62.217 60.000 32.66 0.00 46.09 2.90
2074 2089 3.584868 GACCGGCGCAGGTTAGTGT 62.585 63.158 32.66 9.46 46.09 3.55
2075 2090 2.813908 GACCGGCGCAGGTTAGTG 60.814 66.667 32.66 5.64 46.09 2.74
2076 2091 2.874664 TTGACCGGCGCAGGTTAGT 61.875 57.895 32.66 10.71 46.09 2.24
2077 2092 2.047655 TTGACCGGCGCAGGTTAG 60.048 61.111 32.66 6.84 46.09 2.34
2078 2093 2.357760 GTTGACCGGCGCAGGTTA 60.358 61.111 32.66 26.29 46.09 2.85
2079 2094 4.555709 TGTTGACCGGCGCAGGTT 62.556 61.111 32.66 16.92 46.09 3.50
2081 2096 4.988598 ACTGTTGACCGGCGCAGG 62.989 66.667 25.72 25.72 33.62 4.85
2082 2097 2.954753 GAACTGTTGACCGGCGCAG 61.955 63.158 10.83 4.65 35.31 5.18
2083 2098 2.933878 AAGAACTGTTGACCGGCGCA 62.934 55.000 10.83 0.00 0.00 6.09
2084 2099 2.171489 GAAGAACTGTTGACCGGCGC 62.171 60.000 0.00 0.00 0.00 6.53
2085 2100 1.566018 GGAAGAACTGTTGACCGGCG 61.566 60.000 0.00 0.00 0.00 6.46
2235 2270 0.040958 GTTCTCAGCAAACGTGGCAG 60.041 55.000 14.05 6.85 0.00 4.85
2242 2277 4.906437 GTGATTTCTTCGTTCTCAGCAAAC 59.094 41.667 0.00 0.00 0.00 2.93
2280 2315 4.621034 CCTGCGGTGTTATTGTTGAATTTC 59.379 41.667 0.00 0.00 0.00 2.17
2306 2341 6.826231 TGGTAGTGTTTCTGTTGAGATTCAAA 59.174 34.615 0.00 0.00 38.22 2.69
2416 2453 1.906574 AGGTAGGTGAAATCTTCCGCA 59.093 47.619 0.00 0.00 0.00 5.69
2419 2456 2.742204 GCGGAGGTAGGTGAAATCTTCC 60.742 54.545 0.00 0.00 0.00 3.46
2420 2457 2.552031 GCGGAGGTAGGTGAAATCTTC 58.448 52.381 0.00 0.00 0.00 2.87
2421 2458 1.209747 GGCGGAGGTAGGTGAAATCTT 59.790 52.381 0.00 0.00 0.00 2.40
2422 2459 0.831307 GGCGGAGGTAGGTGAAATCT 59.169 55.000 0.00 0.00 0.00 2.40
2424 2461 0.541863 CAGGCGGAGGTAGGTGAAAT 59.458 55.000 0.00 0.00 0.00 2.17
2425 2462 1.980052 CAGGCGGAGGTAGGTGAAA 59.020 57.895 0.00 0.00 0.00 2.69
2552 2611 9.730420 GTGATATTCACAACCCATACAAAATAC 57.270 33.333 2.85 0.00 46.22 1.89
2959 3019 1.817099 GGTCTTGCTCATGGCCTCG 60.817 63.158 3.32 0.00 40.92 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.